AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0800430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800430 MtrunA17_Chr5g0406001 96.205 527 20 0 1 527 1 527 0.0 1032
Msa0800430 MtrunA17_Chr8g0371371 64.800 500 163 9 31 525 31 522 0.0 644
Msa0800430 MtrunA17_Chr8g0371351 47.255 510 242 13 33 527 20 517 1.51e-154 451
Msa0800430 MtrunA17_Chr3g0124421 38.497 439 253 12 37 466 25 455 1.30e-94 297
Msa0800430 MtrunA17_Chr5g0425141 37.219 489 273 16 38 513 24 491 2.43e-89 283
Msa0800430 MtrunA17_Chr6g0484731 28.198 383 219 17 112 461 191 550 3.19e-31 127
Msa0800430 MtrunA17_Chr4g0027681 28.827 392 225 18 112 474 77 443 1.40e-30 124
Msa0800430 MtrunA17_Chr1g0179751 26.570 414 259 15 75 461 74 469 1.66e-30 124
Msa0800430 MtrunA17_Chr7g0221681 26.764 411 247 17 112 486 72 464 4.40e-30 123
Msa0800430 MtrunA17_Chr7g0265331 26.971 482 287 21 72 522 45 492 1.01e-28 119
Msa0800430 MtrunA17_Chr5g0419291 27.115 461 277 18 19 461 9 428 4.13e-28 116
Msa0800430 MtrunA17_Chr2g0320621 27.540 443 264 21 72 486 43 456 2.41e-26 112
Msa0800430 MtrunA17_Chr1g0189381 27.604 384 221 19 112 461 69 429 3.42e-26 111
Msa0800430 MtrunA17_Chr3g0095891 27.792 385 218 15 113 461 98 458 5.80e-26 110
Msa0800430 MtrunA17_Chr3g0130931 27.373 453 262 17 34 461 38 448 6.73e-26 110
Msa0800430 MtrunA17_Chr5g0435871 26.316 475 284 19 10 461 3 434 6.67e-25 107
Msa0800430 MtrunA17_Chr3g0130741 28.804 368 217 17 117 461 89 434 1.88e-24 106
Msa0800430 MtrunA17_Chr7g0249451 26.247 381 229 14 112 461 71 430 1.63e-23 103
Msa0800430 MtrunA17_Chr8g0384731 27.532 385 228 17 114 473 73 431 2.17e-23 102
Msa0800430 MtrunA17_Chr5g0442921 26.382 398 226 14 106 463 185 555 3.84e-23 103
Msa0800430 MtrunA17_Chr2g0307991 26.735 389 235 18 96 461 43 404 3.29e-21 95.9
Msa0800430 MtrunA17_Chr8g0352671 25.478 471 284 20 15 461 9 436 3.34e-21 96.3
Msa0800430 MtrunA17_Chr5g0415951 28.142 366 214 16 119 461 95 434 4.49e-21 95.9
Msa0800430 MtrunA17_Chr5g0395911 26.431 367 231 15 113 461 68 413 4.76e-21 95.5
Msa0800430 MtrunA17_Chr8g0386441 27.154 383 224 16 99 461 82 429 5.74e-21 95.5
Msa0800430 MtrunA17_Chr4g0010951 24.505 404 232 14 112 461 61 445 1.12e-20 94.7
Msa0800430 MtrunA17_Chr2g0310801 26.776 366 228 16 113 461 91 433 2.99e-20 93.2
Msa0800430 MtrunA17_Chr8g0352661 26.458 480 278 26 12 461 2 436 1.82e-18 87.8
Msa0800430 MtrunA17_Chr4g0053721 24.890 454 263 21 108 525 77 488 2.05e-18 88.6
Msa0800430 MtrunA17_Chr7g0275731 26.596 376 216 17 113 461 142 484 3.43e-18 87.4
Msa0800430 MtrunA17_Chr2g0308001 24.515 412 252 18 106 493 52 428 4.51e-18 86.7
Msa0800430 MtrunA17_Chr5g0401601 24.344 419 231 19 119 486 95 478 7.96e-18 87.0
Msa0800430 MtrunA17_Chr3g0078321 26.440 382 220 19 122 473 69 419 1.32e-17 85.1
Msa0800430 MtrunA17_Chr1g0210201 26.400 375 211 17 113 461 132 467 1.53e-17 85.5
Msa0800430 MtrunA17_Chr6g0487471 25.648 386 220 18 113 465 87 438 1.96e-17 84.7
Msa0800430 MtrunA17_Chr6g0484901 26.703 367 219 14 113 461 157 491 3.11e-17 84.3
Msa0800430 MtrunA17_Chr1g0164401 28.877 374 203 17 113 461 93 428 3.50e-17 84.0
Msa0800430 MtrunA17_Chr2g0310821 25.967 362 227 14 113 461 109 442 3.65e-17 84.0
Msa0800430 MtrunA17_Chr1g0159791 26.330 376 233 15 109 461 55 409 4.90e-17 83.6
Msa0800430 MtrunA17_Chr8g0353261 26.882 372 214 17 113 461 97 433 6.82e-17 83.2
Msa0800430 MtrunA17_Chr3g0099901 25.067 371 228 13 113 461 143 485 2.25e-15 78.6
Msa0800430 MtrunA17_Chr8g0390761 23.596 356 226 13 114 451 118 445 3.29e-15 78.2
Msa0800430 MtrunA17_Chr2g0312941 25.515 388 232 18 112 461 87 455 1.22e-14 76.3
Msa0800430 MtrunA17_Chr2g0333991 23.890 473 285 21 19 460 6 434 1.35e-14 75.9
Msa0800430 MtrunA17_Chr1g0165201 25.401 374 221 15 113 461 129 469 2.01e-14 75.5
Msa0800430 MtrunA17_Chr4g0023351 28.814 236 141 11 111 336 57 275 2.09e-14 73.9
Msa0800430 MtrunA17_Chr2g0311451 23.573 403 233 16 91 461 76 435 7.09e-14 73.9
Msa0800430 MtrunA17_Chr2g0291201 25.333 375 228 17 113 461 103 451 8.11e-14 73.6
Msa0800430 MtrunA17_Chr7g0267171 24.500 400 220 18 116 461 94 465 1.09e-13 73.2
Msa0800430 MtrunA17_Chr3g0099891 26.203 374 214 18 113 461 118 454 6.24e-13 70.9
Msa0800430 MtrunA17_Chr7g0239001 24.804 383 215 18 115 458 62 410 1.38e-12 69.7
Msa0800430 MtrunA17_Chr6g0486981 24.274 482 288 25 10 461 2 436 1.85e-11 66.2
Msa0800430 MtrunA17_Chr8g0352691 26.296 270 163 12 210 461 8 259 7.87e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800430 AT2G17760.1 53.535 495 219 8 32 522 26 513 1.86e-176 507
Msa0800430 AT4G35880.1 50.881 454 211 9 17 465 9 455 1.14e-153 449
Msa0800430 AT4G35880.2 49.180 427 205 8 17 438 9 428 2.76e-136 402
Msa0800430 AT3G51330.1 48.649 444 212 12 31 465 21 457 2.33e-131 392
Msa0800430 AT3G51330.3 48.636 440 210 12 31 461 21 453 8.74e-130 386
Msa0800430 AT3G51350.1 47.191 445 216 14 31 465 21 456 1.01e-128 386
Msa0800430 AT3G51340.2 46.053 456 229 12 16 465 7 451 1.64e-128 385
Msa0800430 AT3G51360.9 44.397 464 237 12 24 481 17 465 1.38e-123 372
Msa0800430 AT3G51360.1 44.397 464 237 12 24 481 7 455 1.39e-123 371
Msa0800430 AT3G51340.1 44.421 466 234 14 16 465 7 463 9.31e-121 365
Msa0800430 AT3G51330.2 46.411 418 208 12 31 439 21 431 2.34e-112 341
Msa0800430 AT3G51360.6 43.499 423 218 12 24 440 17 424 7.09e-107 327
Msa0800430 AT3G51360.10 43.499 423 218 12 24 440 7 414 8.82e-107 326
Msa0800430 AT3G51340.3 44.307 404 209 11 16 414 7 399 2.50e-104 319
Msa0800430 AT3G51360.7 45.479 376 191 9 112 481 4 371 1.44e-102 314
Msa0800430 AT3G51340.4 45.745 376 191 10 16 386 7 374 3.17e-102 313
Msa0800430 AT3G51360.4 43.734 391 203 10 24 412 7 382 7.89e-102 312
Msa0800430 AT3G51360.5 43.734 391 203 10 24 412 17 392 8.78e-102 313
Msa0800430 AT3G51360.2 45.210 334 169 8 24 356 17 337 7.84e-91 282
Msa0800430 AT5G10080.1 36.364 484 270 15 22 487 8 471 2.75e-89 284
Msa0800430 AT3G51360.3 42.433 337 181 8 150 481 1 329 1.31e-79 253
Msa0800430 AT3G51360.8 42.433 337 181 8 150 481 1 329 1.31e-79 253
Msa0800430 AT3G02740.2 27.896 423 219 15 112 485 9 394 3.17e-34 134
Msa0800430 AT3G02740.1 27.896 423 219 15 112 485 84 469 3.32e-34 135
Msa0800430 AT5G22850.1 27.253 455 278 19 72 500 46 473 6.38e-31 126
Msa0800430 AT5G36260.1 26.444 450 265 19 36 461 26 433 6.79e-31 125
Msa0800430 AT1G05840.1 29.301 372 229 15 112 461 79 438 1.79e-30 124
Msa0800430 AT4G33490.2 29.381 388 220 20 109 469 57 417 1.93e-29 120
Msa0800430 AT2G36670.2 27.184 412 265 16 72 461 59 457 1.64e-28 119
Msa0800430 AT1G65240.1 27.493 371 231 14 112 461 73 426 2.92e-28 118
Msa0800430 AT2G36670.4 27.128 376 243 13 106 461 27 391 3.06e-28 117
Msa0800430 AT2G36670.3 27.128 376 243 13 106 461 27 391 3.06e-28 117
Msa0800430 AT2G36670.1 26.747 415 268 16 72 461 59 462 3.61e-28 118
Msa0800430 AT1G49050.2 28.535 396 214 21 109 461 26 395 5.12e-27 113
Msa0800430 AT1G49050.1 28.133 391 216 21 112 461 202 568 7.63e-26 112
Msa0800430 AT1G44130.1 29.315 365 220 16 117 461 53 399 2.08e-25 108
Msa0800430 AT1G08210.1 26.471 442 266 19 112 526 83 492 3.85e-25 108
Msa0800430 AT1G08210.4 26.471 442 266 19 112 526 117 526 4.20e-25 109
Msa0800430 AT1G08210.3 26.471 442 266 19 112 526 131 540 4.98e-25 108
Msa0800430 AT3G54400.1 25.806 372 218 15 113 461 88 424 3.96e-24 105
Msa0800430 AT4G33490.1 27.473 364 218 17 115 456 59 398 5.71e-24 104
Msa0800430 AT3G50050.1 26.598 391 225 20 119 481 99 455 5.77e-23 103
Msa0800430 AT2G42980.1 27.132 387 226 15 113 463 160 526 4.62e-22 100
Msa0800430 AT1G08210.2 25.160 469 265 20 112 526 83 519 9.77e-22 99.0
Msa0800430 AT3G61820.1 28.272 382 208 18 113 461 135 483 1.55e-21 98.2
Msa0800430 AT5G43100.2 25.957 470 265 25 69 504 37 457 6.68e-21 96.3
Msa0800430 AT5G43100.1 25.793 473 262 26 69 504 37 457 1.16e-20 96.3
Msa0800430 AT1G64830.1 29.443 377 204 19 113 461 86 428 1.23e-20 94.7
Msa0800430 AT2G03200.1 28.760 379 207 18 116 461 110 458 3.21e-20 94.0
Msa0800430 AT3G25700.1 23.232 396 227 17 113 461 84 449 7.45e-20 92.8
Msa0800430 AT4G30040.1 26.776 366 221 16 114 456 86 427 2.50e-19 90.9
Msa0800430 AT5G33340.1 27.177 379 212 17 113 461 90 434 2.68e-19 90.9
Msa0800430 AT1G49050.3 28.520 277 164 12 112 370 202 462 3.14e-19 90.9
Msa0800430 AT3G52500.1 23.881 402 225 12 115 461 92 467 1.13e-18 89.4
Msa0800430 AT1G77480.1 24.403 377 240 16 109 461 64 419 1.21e-18 89.0
Msa0800430 AT1G77480.2 24.267 375 243 16 109 461 64 419 1.26e-18 89.0
Msa0800430 AT3G59080.1 26.302 384 231 14 113 463 170 534 1.29e-18 89.4
Msa0800430 AT1G01300.1 26.260 377 216 16 113 461 142 484 1.47e-18 89.0
Msa0800430 AT5G10770.1 26.146 371 223 17 113 461 132 473 3.26e-18 87.8
Msa0800430 AT5G10760.1 27.945 365 215 14 113 461 132 464 4.82e-18 87.4
Msa0800430 AT2G23945.1 27.742 310 180 15 112 402 95 379 2.49e-17 85.1
Msa0800430 AT5G07030.1 25.745 369 213 17 119 461 121 454 3.71e-17 84.3
Msa0800430 AT3G18490.1 26.330 376 213 18 113 461 162 500 2.96e-16 82.0
Msa0800430 AT3G20015.1 24.390 451 257 18 62 461 53 470 4.73e-16 81.3
Msa0800430 AT1G25510.1 26.273 373 214 17 113 461 148 483 8.32e-16 80.5
Msa0800430 AT4G30030.1 25.269 372 223 15 114 461 79 419 1.61e-15 79.3
Msa0800430 AT1G31450.1 23.558 416 250 17 78 461 62 441 5.97e-15 77.4
Msa0800430 AT1G09750.1 26.700 397 233 18 94 461 81 448 2.23e-14 75.9
Msa0800430 AT2G28040.2 23.562 365 228 15 111 461 54 381 7.69e-13 70.9
Msa0800430 AT3G42550.1 21.189 387 224 14 108 475 73 397 8.24e-13 70.9
Msa0800430 AT2G28040.1 23.562 365 228 15 111 461 63 390 1.22e-12 70.1
Msa0800430 AT5G45120.1 26.225 347 186 13 110 411 82 403 6.01e-12 68.6
Msa0800430 AT1G79720.1 26.873 387 206 19 113 461 135 482 9.77e-12 67.8
Msa0800430 AT5G02190.1 21.354 384 235 13 122 461 82 442 3.21e-11 65.9

Find 122 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGATCTCTATTATATT+TGG 0.103631 5_3:-13787390 Msa0800430:three_prime_UTR
AATTTCCTCCCACAATAATT+TGG 0.127702 5_3:+13788869 None:intergenic
GAAGGGGTAGATTGTATTTC+AGG 0.187188 5_3:+13787696 None:intergenic
TGATCCGGTGAAGGGTATTT+TGG 0.196341 5_3:-13791552 Msa0800430:CDS
CTGAAACATATAAAGAATTA+TGG 0.204200 5_3:+13791666 None:intergenic
TTTCATCGTCAAGTTAATAT+TGG 0.219888 5_3:+13788273 None:intergenic
GATCATCATTATCTGTAATT+AGG 0.222151 5_3:+13789591 None:intergenic
GCTAACCCACTAATTACTTT+TGG 0.224798 5_3:-13789557 Msa0800430:CDS
TATCTTGTTGCATTAGATAC+TGG 0.267458 5_3:-13790100 Msa0800430:CDS
GATAGATATTCAACTTGATA+TGG 0.275532 5_3:+13789659 None:intergenic
ATCTGGTACGTGGTGTTATC+TGG 0.281632 5_3:+13791401 None:intergenic
AAAATTTCGGAAAATATATA+TGG 0.291561 5_3:+13791774 None:intergenic
TACTTCAACTACTGGTTTCT+TGG 0.296582 5_3:-13789630 Msa0800430:CDS
TATACCACATAATTTGTCTT+TGG 0.297226 5_3:-13787416 Msa0800430:three_prime_UTR
ACCCTGCCACTTGTTATTAT+CGG 0.308776 5_3:+13788223 None:intergenic
TTCATCGTCAAGTTAATATT+GGG 0.322472 5_3:+13788274 None:intergenic
CTCACATAAGCTGCTATTGC+AGG 0.328660 5_3:+13789721 None:intergenic
ATACTGGGAGTGACTTGTTC+TGG 0.342280 5_3:-13790084 Msa0800430:CDS
TATAGTCTTAGGGTTCAAAT+TGG 0.344034 5_3:+13787319 None:intergenic
GCAGCTCCAAATGGTCTGTT+TGG 0.347954 5_3:-13789287 Msa0800430:CDS
GTTTGGGAAGAATCACATTT+GGG 0.350381 5_3:-13789175 Msa0800430:CDS
CCTTGTTTGGCTAAGATACT+TGG 0.362835 5_3:+13789239 None:intergenic
TATTGGGAACTTCAATTGTC+TGG 0.365704 5_3:+13788290 None:intergenic
TTCTTAAATGAGTGACTAGA+TGG 0.366521 5_3:+13787654 None:intergenic
ATTTCCTCCCACAATAATTT+GGG 0.367517 5_3:+13788870 None:intergenic
AGAACCTGCATTAGCATTTA+CGG 0.372839 5_3:-13787631 Msa0800430:CDS
ACGTACCAGATTAGTTTGTT+TGG 0.379494 5_3:-13791389 Msa0800430:CDS
TTGAGTACTGCTATGACTTA+AGG 0.381947 5_3:-13788601 Msa0800430:intron
TGAAACATATAAAGAATTAT+GGG 0.382201 5_3:+13791667 None:intergenic
TGTTAACAATGTTCTTTGTT+TGG 0.388665 5_3:-13788101 Msa0800430:CDS
AGCAACAATGTGAATATCAT+TGG 0.391322 5_3:-13788067 Msa0800430:CDS
GGTTTGGGAAGAATCACATT+TGG 0.393676 5_3:-13789176 Msa0800430:CDS
ATTTGAAGTTAGCCCTTGTT+TGG 0.395771 5_3:+13789226 None:intergenic
GGGGCGTGCGATCGGTTAAC+AGG 0.398760 5_3:+13787747 None:intergenic
AGTTGTGGGCAAGTTCAAAC+AGG 0.401886 5_3:-13789326 Msa0800430:CDS
GGGAGGAAATTCCGCTGATC+TGG 0.403580 5_3:-13788857 Msa0800430:CDS
CCTAGTCCAAACAGACCATT+TGG 0.407470 5_3:+13789281 None:intergenic
ACTATCCAAACAAACTAATC+TGG 0.410497 5_3:+13791384 None:intergenic
TGCCATGGTTCTAGTTCATT+CGG 0.417426 5_3:-13791599 Msa0800430:CDS
CTCTATACCATGGACACATT+TGG 0.418622 5_3:+13790045 None:intergenic
TTCAATGCAATATTCGATAC+TGG 0.419948 5_3:-13788832 Msa0800430:CDS
CTGGATGGGGCAGCTCCAAA+TGG 0.437755 5_3:-13789296 Msa0800430:CDS
TGACTAGATGGAAGTCTTTG+AGG 0.440995 5_3:+13787666 None:intergenic
AACTACTGGTTTCTTGGTAG+AGG 0.441070 5_3:-13789624 Msa0800430:CDS
ACACAGTGCTCTTCTTCATC+TGG 0.446019 5_3:-13789692 Msa0800430:CDS
GTGAGAGATTATAGTATTGA+CGG 0.449278 5_3:+13787341 None:intergenic
TATTCACGACTTCCCTTGTC+AGG 0.449376 5_3:+13791515 None:intergenic
CCCTGCCACTTGTTATTATC+GGG 0.450581 5_3:+13788224 None:intergenic
CCAAATGGTCTGTTTGGACT+AGG 0.469915 5_3:-13789281 Msa0800430:CDS
TGGATCTCATAATTTATTTG+TGG 0.470981 5_3:-13787370 Msa0800430:three_prime_UTR
CCCAGCTGTGTCTCCTGCTA+TGG 0.476244 5_3:-13787727 Msa0800430:CDS
CGGGGTCGGCGTCTTGCTGA+CGG 0.476845 5_3:-13791458 Msa0800430:CDS
TGAGTAATTTGCTTATAAGC+CGG 0.481151 5_3:+13788784 None:intergenic
TCAGGATTCACCGCCATAGC+AGG 0.482898 5_3:+13787714 None:intergenic
CATGCAGAAAACTTCATGAC+TGG 0.483710 5_3:-13787948 Msa0800430:intron
ATCACCAAAACACATTGAAA+AGG 0.486742 5_3:+13789202 None:intergenic
AGTTACCCAAAAGTAATTAG+TGG 0.486929 5_3:+13789551 None:intergenic
TCAGAAAATACTTCAACTAC+TGG 0.487753 5_3:-13789638 Msa0800430:CDS
CTCATCATATTCATTCATCA+TGG 0.493531 5_3:-13791714 Msa0800430:exon
AGTCTTTGAGGACCATTTGA+AGG 0.496392 5_3:+13787678 None:intergenic
ATACAATCTACCCCTTCAAA+TGG 0.498025 5_3:-13787690 Msa0800430:CDS
AATATTAACTTGACGATGAA+AGG 0.500812 5_3:-13788271 Msa0800430:CDS
ATCTTGTTGCATTAGATACT+GGG 0.501285 5_3:-13790099 Msa0800430:CDS
GCCATAGCAGGAGACACAGC+TGG 0.503097 5_3:+13787726 None:intergenic
GAGTAATTTGCTTATAAGCC+GGG 0.503673 5_3:+13788785 None:intergenic
CATGGTATAGAGCTATCAAC+AGG 0.505796 5_3:-13790034 Msa0800430:CDS
CACTGTCACCCAAATTATTG+TGG 0.506380 5_3:-13788878 Msa0800430:CDS
ACCCGATAATAACAAGTGGC+AGG 0.513201 5_3:-13788225 Msa0800430:CDS
CCATAGCAGGAGACACAGCT+GGG 0.513250 5_3:+13787727 None:intergenic
CCAAGTATCTTAGCCAAACA+AGG 0.519276 5_3:-13789239 Msa0800430:CDS
TGGGGATAATAATAGTAGCT+TGG 0.520297 5_3:-13789156 Msa0800430:CDS
AAGTCATAGCAGTACTCAAA+GGG 0.522967 5_3:+13788605 None:intergenic
ACACAGCTGGGGCGTGCGAT+CGG 0.529343 5_3:+13787739 None:intergenic
GTTTAATTTCACAATCACAT+AGG 0.529895 5_3:-13791622 Msa0800430:CDS
GTCTTTGAGGACCATTTGAA+GGG 0.534896 5_3:+13787679 None:intergenic
GTTACCCAAAAGTAATTAGT+GGG 0.541649 5_3:+13789552 None:intergenic
TAAAGAATTATGGGTTTCGT+AGG 0.543723 5_3:+13791676 None:intergenic
GCGAGAACATGACTCTAGGT+TGG 0.557604 5_3:-13787905 Msa0800430:CDS
ACTGTCACCCAAATTATTGT+GGG 0.559749 5_3:-13788877 Msa0800430:CDS
GATCGCGAGAACATGACTCT+AGG 0.567796 5_3:-13787909 Msa0800430:CDS
TATTGAGAACGTTCCTGACA+AGG 0.569108 5_3:-13791528 Msa0800430:CDS
TCGTGAATACTATGTTGCTA+TGG 0.570427 5_3:-13791501 Msa0800430:CDS
GCTGTTTAAGTATGTAAATG+AGG 0.570981 5_3:+13788807 None:intergenic
GCCACCGTAAATGCTAATGC+AGG 0.574848 5_3:+13787627 None:intergenic
TCACAATCACATAGGTGCCA+TGG 0.575054 5_3:-13791614 Msa0800430:CDS
TGCGACGGCCTAATATTGAA+TGG 0.577927 5_3:+13789119 None:intergenic
CACATTTGGTACAATTGCAA+GGG 0.578522 5_3:+13790059 None:intergenic
ACACATTTGGTACAATTGCA+AGG 0.579567 5_3:+13790058 None:intergenic
ATACCCAAAATACCCTTCAC+CGG 0.579612 5_3:+13791548 None:intergenic
GCAACAAGATACGATGAAGC+TGG 0.584329 5_3:+13790112 None:intergenic
CAGTGCTCTTCTTCATCTGG+TGG 0.585118 5_3:-13789689 Msa0800430:CDS
GAATCCAAAGACAAATTATG+TGG 0.585265 5_3:+13787412 None:intergenic
TAAGTCATAGCAGTACTCAA+AGG 0.585485 5_3:+13788604 None:intergenic
AAAACTTCATGACTGGCTAC+CGG 0.586042 5_3:-13787941 Msa0800430:CDS
AGCTGTGTCTCCTGCTATGG+CGG 0.589379 5_3:-13787724 Msa0800430:CDS
GAACATGACTCTAGGTTGGA+AGG 0.591059 5_3:-13787901 Msa0800430:CDS
ACAATAACCACTTACTGCGA+CGG 0.595509 5_3:+13789104 None:intergenic
TGGTGTTCCAACAGAAACAT+TGG 0.596649 5_3:+13790132 None:intergenic
CCGGATCAGAAAACCGATGG+TGG 0.596699 5_3:+13791567 None:intergenic
GCGTGTGAAGTAAATGTCAA+TGG 0.600629 5_3:+13791836 None:intergenic
TATAGAGCTATCAACAGGAC+AGG 0.606470 5_3:-13790029 Msa0800430:intron
CCCGATAATAACAAGTGGCA+GGG 0.610110 5_3:-13788224 Msa0800430:intron
AATAATAGTAGCTTGGACCA+AGG 0.612712 5_3:-13789149 Msa0800430:CDS
AACCGAATGAACTAGAACCA+TGG 0.618540 5_3:+13791597 None:intergenic
ATTAACTTGACGATGAAAGG+TGG 0.618692 5_3:-13788268 Msa0800430:CDS
AATTGTACCAAATGTGTCCA+TGG 0.625959 5_3:-13790052 Msa0800430:CDS
TCACCGGATCAGAAAACCGA+TGG 0.631331 5_3:+13791564 None:intergenic
GTCACCCAAATTATTGTGGG+AGG 0.641019 5_3:-13788874 Msa0800430:CDS
ATTGAGAACGTTCCTGACAA+GGG 0.643964 5_3:-13791527 Msa0800430:CDS
TGCATTGAACTCCAGATCAG+CGG 0.650143 5_3:+13788846 None:intergenic
ATTTACATACTTAAACAGCC+CGG 0.653555 5_3:-13788803 Msa0800430:CDS
TTTGGGAAGAATCACATTTG+GGG 0.655444 5_3:-13789174 Msa0800430:CDS
GGTCGGCGTCTTGCTGACGG+TGG 0.660969 5_3:-13791455 Msa0800430:CDS
CTGTTGATAGCTCTATACCA+TGG 0.663638 5_3:+13790035 None:intergenic
GTTGTGGGCAAGTTCAAACA+GGG 0.666836 5_3:-13789325 Msa0800430:CDS
ATGGACCCGATAATAACAAG+TGG 0.685658 5_3:-13788229 Msa0800430:CDS
CATAGCAGGAGACACAGCTG+GGG 0.686306 5_3:+13787728 None:intergenic
ACCTGCATTAGCATTTACGG+TGG 0.694138 5_3:-13787628 Msa0800430:CDS
TCTTTGAGGACCATTTGAAG+GGG 0.697645 5_3:+13787680 None:intergenic
CAAGTATCTTAGCCAAACAA+GGG 0.698265 5_3:-13789238 Msa0800430:CDS
TTGTGGGCAAGTTCAAACAG+GGG 0.708328 5_3:-13789324 Msa0800430:CDS
AAACAAACTAATCTGGTACG+TGG 0.721432 5_3:+13791391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAATAATGTAATTAA+AGG + chr5_3:13788068-13788087 None:intergenic 10.0%
!! AAAATGAAAAGAATAATTAA+GGG + chr5_3:13788854-13788873 None:intergenic 10.0%
!! AAAAATGAAAAGAATAATTA+AGG + chr5_3:13788855-13788874 None:intergenic 10.0%
!!! TAATTATTCTTTTCATTTTT+TGG - chr5_3:13788855-13788874 Msa0800430:CDS 10.0%
!!! AATTATTCTTTTCATTTTTT+GGG - chr5_3:13788856-13788875 Msa0800430:CDS 10.0%
!! AAAATATTGTATAGTTAAAT+TGG + chr5_3:13789792-13789811 None:intergenic 10.0%
!!! TTAACTATACAATATTTTTT+TGG - chr5_3:13789794-13789813 Msa0800430:intron 10.0%
!!! ATAATTTTTAAATATGTAAC+TGG - chr5_3:13790456-13790475 Msa0800430:intron 10.0%
!! AAAATTTCGGAAAATATATA+TGG + chr5_3:13787424-13787443 None:intergenic 15.0%
!! TGAAACATATAAAGAATTAT+GGG + chr5_3:13787531-13787550 None:intergenic 15.0%
!! TATAACAAAAAATTAAGTAG+TGG + chr5_3:13787851-13787870 None:intergenic 15.0%
!!! TTTTAATTTCATCTTTTTTC+TGG - chr5_3:13787871-13787890 Msa0800430:intron 15.0%
!!! TTTTTAGAAAGAAAAAGATT+GGG - chr5_3:13787990-13788009 Msa0800430:intron 15.0%
!!! TTTCCATTTTAGATAATTTT+TGG - chr5_3:13788085-13788104 Msa0800430:CDS 15.0%
!! ATTCCAAAAATTATCTAAAA+TGG + chr5_3:13788091-13788110 None:intergenic 15.0%
!!! TTTGGAATTGAATATTTAAA+AGG - chr5_3:13788103-13788122 Msa0800430:CDS 15.0%
!! AACATTAATCTCTTAAATTT+AGG + chr5_3:13788382-13788401 None:intergenic 15.0%
!! ATCTAAAAAAAAATCTGATA+TGG - chr5_3:13788663-13788682 Msa0800430:intron 15.0%
!!! GTTACAAAACATTTTTTTTT+TGG + chr5_3:13789728-13789747 None:intergenic 15.0%
!! ATTCAAAAATTAAACTACAA+AGG - chr5_3:13790540-13790559 Msa0800430:intron 15.0%
!!! TATATATTTTGAAGTACAAA+GGG + chr5_3:13791343-13791362 None:intergenic 15.0%
!! AATTATGTTATGTTATTATC+AGG - chr5_3:13791400-13791419 Msa0800430:CDS 15.0%
!!! TATTACTATACATTTTTTTC+TGG - chr5_3:13791694-13791713 Msa0800430:CDS 15.0%
!! CTGAAACATATAAAGAATTA+TGG + chr5_3:13787532-13787551 None:intergenic 20.0%
!!! CTTTTTAGAAAGAAAAAGAT+TGG - chr5_3:13787989-13788008 Msa0800430:intron 20.0%
!!! ACTTTTTCTTTGTAAATCTA+AGG + chr5_3:13788245-13788264 None:intergenic 20.0%
!! GAGAGAAATTTATCATAAAA+TGG - chr5_3:13788325-13788344 Msa0800430:intron 20.0%
!!! TTCACATTTAGATTCTTTTT+TGG + chr5_3:13788694-13788713 None:intergenic 20.0%
!!! TTCATTTTTTTTTTAATGGG+AGG - chr5_3:13788812-13788831 Msa0800430:CDS 20.0%
!! ATGAATCTAAAAATACTTGA+TGG - chr5_3:13788928-13788947 Msa0800430:intron 20.0%
!! TGAATCTAAAAATACTTGAT+GGG - chr5_3:13788929-13788948 Msa0800430:intron 20.0%
!!! TGGTTTTGATACTTTTTTTT+TGG + chr5_3:13789316-13789335 None:intergenic 20.0%
!! TACAAGATTAAACTATAGTA+TGG + chr5_3:13789336-13789355 None:intergenic 20.0%
!!! AAAGTGTCATTAAATTCAAA+TGG + chr5_3:13789384-13789403 None:intergenic 20.0%
!! TTAATTAATAAGAACTCAAG+TGG + chr5_3:13790496-13790515 None:intergenic 20.0%
!!! CTATATATTTTGAAGTACAA+AGG + chr5_3:13791344-13791363 None:intergenic 20.0%
!! AATAACTAATGGAGAATTAA+AGG + chr5_3:13791370-13791389 None:intergenic 20.0%
!! TTCTCATTAACAATAACTAA+TGG + chr5_3:13791381-13791400 None:intergenic 20.0%
!! CTTAAGATCTCTATTATATT+TGG - chr5_3:13791805-13791824 Msa0800430:five_prime_UTR 20.0%
! CGTGTGATATGAAAAAATTT+CGG + chr5_3:13787437-13787456 None:intergenic 25.0%
!! GTTTAATTTCACAATCACAT+AGG - chr5_3:13787573-13787592 Msa0800430:three_prime_UTR 25.0%
! ATAAAGTTCATAGAATCACA+CGG - chr5_3:13787959-13787978 Msa0800430:intron 25.0%
! GTAATTAAAGGCTAAAGATT+TGG + chr5_3:13788056-13788075 None:intergenic 25.0%
! TATACTACACTAAATTGTAC+AGG - chr5_3:13788189-13788208 Msa0800430:intron 25.0%
!!! CATTTAGATTCTTTTTTGGA+AGG + chr5_3:13788690-13788709 None:intergenic 25.0%
! ATCAAGAATGCATAACAAAA+AGG + chr5_3:13788960-13788979 None:intergenic 25.0%
! GATAGATATTCAACTTGATA+TGG + chr5_3:13789539-13789558 None:intergenic 25.0%
! GATCATCATTATCTGTAATT+AGG + chr5_3:13789607-13789626 None:intergenic 25.0%
!!! TTTTTTGGACTTGCTTTTTT+TGG - chr5_3:13789809-13789828 Msa0800430:intron 25.0%
!! AATTCCTTTTCAATGTGTTT+TGG - chr5_3:13789989-13790008 Msa0800430:intron 25.0%
! GAAAAACACCATTCAATATT+AGG - chr5_3:13790068-13790087 Msa0800430:CDS 25.0%
! CTTTAAACTATCTTTCTGAA+AGG - chr5_3:13790224-13790243 Msa0800430:intron 25.0%
! TTGTTAAGTTAGTTACAAGT+TGG - chr5_3:13790723-13790742 Msa0800430:intron 25.0%
! TTCATCGTCAAGTTAATATT+GGG + chr5_3:13790924-13790943 None:intergenic 25.0%
! TTTCATCGTCAAGTTAATAT+TGG + chr5_3:13790925-13790944 None:intergenic 25.0%
!! AATATTAACTTGACGATGAA+AGG - chr5_3:13790924-13790943 Msa0800430:intron 25.0%
!! GAGCATGAAATATAACTTTT+TGG - chr5_3:13790997-13791016 Msa0800430:intron 25.0%
! AACCTTATAAATGATTCTTG+TGG - chr5_3:13791057-13791076 Msa0800430:intron 25.0%
! TACCACAAGAATCATTTATA+AGG + chr5_3:13791062-13791081 None:intergenic 25.0%
! TGTTAACAATGTTCTTTGTT+TGG - chr5_3:13791094-13791113 Msa0800430:intron 25.0%
!!! CTAAAAAATTTGCTAAAAGC+AGG + chr5_3:13791600-13791619 None:intergenic 25.0%
!! TATACCACATAATTTGTCTT+TGG - chr5_3:13791779-13791798 Msa0800430:five_prime_UTR 25.0%
! TGGATCTCATAATTTATTTG+TGG - chr5_3:13791825-13791844 Msa0800430:five_prime_UTR 25.0%
CTCATCATATTCATTCATCA+TGG - chr5_3:13787481-13787500 Msa0800430:three_prime_UTR 30.0%
TAAAGAATTATGGGTTTCGT+AGG + chr5_3:13787522-13787541 None:intergenic 30.0%
ACTATCCAAACAAACTAATC+TGG + chr5_3:13787814-13787833 None:intergenic 30.0%
TAAAGTTCATAGAATCACAC+GGG - chr5_3:13787960-13787979 Msa0800430:intron 30.0%
AATTGCTATGTTTGAACACT+TGG - chr5_3:13788536-13788555 Msa0800430:intron 30.0%
TTGAAAATCACACACACAAA+TGG + chr5_3:13788578-13788597 None:intergenic 30.0%
!!! TCTTTTCATTTTTTGGGTCA+TGG - chr5_3:13788862-13788881 Msa0800430:CDS 30.0%
! TTTGTTATGCATTCTTGATG+TGG - chr5_3:13788961-13788980 Msa0800430:intron 30.0%
!!! CATTGCTTATTTTTTCCTCT+TGG - chr5_3:13789017-13789036 Msa0800430:intron 30.0%
AAACTGAAATACAAACCAAG+AGG + chr5_3:13789035-13789054 None:intergenic 30.0%
TATCTTGTTGCATTAGATAC+TGG - chr5_3:13789095-13789114 Msa0800430:intron 30.0%
ATCTTGTTGCATTAGATACT+GGG - chr5_3:13789096-13789115 Msa0800430:intron 30.0%
!!! TTTTTTTTGGCACACAACAA+AGG + chr5_3:13789303-13789322 None:intergenic 30.0%
TCAGAAAATACTTCAACTAC+TGG - chr5_3:13789557-13789576 Msa0800430:CDS 30.0%
!! CTAACCCACTAATTACTTTT+GGG - chr5_3:13789639-13789658 Msa0800430:CDS 30.0%
GTTACCCAAAAGTAATTAGT+GGG + chr5_3:13789646-13789665 None:intergenic 30.0%
AGTTACCCAAAAGTAATTAG+TGG + chr5_3:13789647-13789666 None:intergenic 30.0%
ATCACCAAAACACATTGAAA+AGG + chr5_3:13789996-13790015 None:intergenic 30.0%
! TATTGAATGGTGTTTTTCCT+TGG + chr5_3:13790066-13790085 None:intergenic 30.0%
!!! CATTTATGTTTTTAGCAGCT+TGG - chr5_3:13790135-13790154 Msa0800430:CDS 30.0%
!! TAGACCTTTGAGGTTAATTT+GGG + chr5_3:13790203-13790222 None:intergenic 30.0%
!! ATAGACCTTTGAGGTTAATT+TGG + chr5_3:13790204-13790223 None:intergenic 30.0%
AGTTTAAAGATAGACCTTTG+AGG + chr5_3:13790213-13790232 None:intergenic 30.0%
ATTTCCTCCCACAATAATTT+GGG + chr5_3:13790328-13790347 None:intergenic 30.0%
AATTTCCTCCCACAATAATT+TGG + chr5_3:13790329-13790348 None:intergenic 30.0%
TTCAATGCAATATTCGATAC+TGG - chr5_3:13790363-13790382 Msa0800430:intron 30.0%
GCTGTTTAAGTATGTAAATG+AGG + chr5_3:13790391-13790410 None:intergenic 30.0%
ATTTACATACTTAAACAGCC+CGG - chr5_3:13790392-13790411 Msa0800430:intron 30.0%
!! TGAGTAATTTGCTTATAAGC+CGG + chr5_3:13790414-13790433 None:intergenic 30.0%
TAATAAGAACTCAAGTGGAA+TGG + chr5_3:13790491-13790510 None:intergenic 30.0%
GAATCAAACTGCAAAAACAA+TGG + chr5_3:13790524-13790543 None:intergenic 30.0%
!! TGGAGACAATTATTTTGTCA+TGG - chr5_3:13790947-13790966 Msa0800430:intron 30.0%
AGCAACAATGTGAATATCAT+TGG - chr5_3:13791128-13791147 Msa0800430:intron 30.0%
TTCTTAAATGAGTGACTAGA+TGG + chr5_3:13791544-13791563 None:intergenic 30.0%
GAATCCAAAGACAAATTATG+TGG + chr5_3:13791786-13791805 None:intergenic 30.0%
! GTGAGAGATTATAGTATTGA+CGG + chr5_3:13791857-13791876 None:intergenic 30.0%
TCGTGAATACTATGTTGCTA+TGG - chr5_3:13787694-13787713 Msa0800430:CDS 35.0%
AAACAAACTAATCTGGTACG+TGG + chr5_3:13787807-13787826 None:intergenic 35.0%
!! ACGTACCAGATTAGTTTGTT+TGG - chr5_3:13787806-13787825 Msa0800430:intron 35.0%
CAACCACATATGTTTGTGTT+TGG - chr5_3:13787929-13787948 Msa0800430:CDS 35.0%
GTACCAAACACAAACATATG+TGG + chr5_3:13787935-13787954 None:intergenic 35.0%
AAAATCACACACACAAATGG+AGG + chr5_3:13788575-13788594 None:intergenic 35.0%
!! CATTTTGCCAATGTTTCTGT+TGG - chr5_3:13789056-13789075 Msa0800430:intron 35.0%
CACATTTGGTACAATTGCAA+GGG + chr5_3:13789139-13789158 None:intergenic 35.0%
ACACATTTGGTACAATTGCA+AGG + chr5_3:13789140-13789159 None:intergenic 35.0%
AATTGTACCAAATGTGTCCA+TGG - chr5_3:13789143-13789162 Msa0800430:CDS 35.0%
CAAAACTATACTGCAGAGAT+TGG - chr5_3:13789230-13789249 Msa0800430:CDS 35.0%
ACATCTTAATACCCCTACTT+AGG + chr5_3:13789272-13789291 None:intergenic 35.0%
!! AAGTAGGGGTATTAAGATGT+CGG - chr5_3:13789272-13789291 Msa0800430:CDS 35.0%
!! TACTTCAACTACTGGTTTCT+TGG - chr5_3:13789565-13789584 Msa0800430:CDS 35.0%
! GCTAACCCACTAATTACTTT+TGG - chr5_3:13789638-13789657 Msa0800430:CDS 35.0%
TTCCTCGCTAAGTTTAGTAA+TGG - chr5_3:13789693-13789712 Msa0800430:CDS 35.0%
TTCCATTACTAAACTTAGCG+AGG + chr5_3:13789698-13789717 None:intergenic 35.0%
ATTGAATGTGTTGCAGTTGT+GGG - chr5_3:13789855-13789874 Msa0800430:intron 35.0%
CAAGTATCTTAGCCAAACAA+GGG - chr5_3:13789957-13789976 Msa0800430:intron 35.0%
! ATTTGAAGTTAGCCCTTGTT+TGG + chr5_3:13789972-13789991 None:intergenic 35.0%
!!! TCAATGTGTTTTGGTGATGA+TGG - chr5_3:13789998-13790017 Msa0800430:intron 35.0%
!!! TGTTTTGGTGATGATGGTTT+GGG - chr5_3:13790004-13790023 Msa0800430:intron 35.0%
GTTTGGGAAGAATCACATTT+GGG - chr5_3:13790020-13790039 Msa0800430:intron 35.0%
TTTGGGAAGAATCACATTTG+GGG - chr5_3:13790021-13790040 Msa0800430:intron 35.0%
TGGGGATAATAATAGTAGCT+TGG - chr5_3:13790039-13790058 Msa0800430:CDS 35.0%
AATAATAGTAGCTTGGACCA+AGG - chr5_3:13790046-13790065 Msa0800430:CDS 35.0%
TAGCAGCTTGGATAATGTTA+AGG - chr5_3:13790147-13790166 Msa0800430:intron 35.0%
ACTGTCACCCAAATTATTGT+GGG - chr5_3:13790318-13790337 Msa0800430:intron 35.0%
!! GAGTAATTTGCTTATAAGCC+GGG + chr5_3:13790413-13790432 None:intergenic 35.0%
AAGTCATAGCAGTACTCAAA+GGG + chr5_3:13790593-13790612 None:intergenic 35.0%
TAAGTCATAGCAGTACTCAA+AGG + chr5_3:13790594-13790613 None:intergenic 35.0%
! TTGAGTACTGCTATGACTTA+AGG - chr5_3:13790594-13790613 Msa0800430:intron 35.0%
TATATCCAACAATCAGTGCT+TGG + chr5_3:13790675-13790694 None:intergenic 35.0%
! CACTGATTGTTGGATATAGT+TGG - chr5_3:13790677-13790696 Msa0800430:intron 35.0%
TATTGGGAACTTCAATTGTC+TGG + chr5_3:13790908-13790927 None:intergenic 35.0%
! ATTAACTTGACGATGAAAGG+TGG - chr5_3:13790927-13790946 Msa0800430:intron 35.0%
ATTCTTGTGGTATTCATTCC+AGG - chr5_3:13791070-13791089 Msa0800430:intron 35.0%
TTCTTGTGGTATTCATTCCA+GGG - chr5_3:13791071-13791090 Msa0800430:intron 35.0%
AAAGAACATTGTTAACACCC+TGG + chr5_3:13791091-13791110 None:intergenic 35.0%
ATACAATCTACCCCTTCAAA+TGG - chr5_3:13791505-13791524 Msa0800430:CDS 35.0%
AGAACCTGCATTAGCATTTA+CGG - chr5_3:13791564-13791583 Msa0800430:CDS 35.0%
GCGTGTGAAGTAAATGTCAA+TGG + chr5_3:13787362-13787381 None:intergenic 40.0%
!! TGCCATGGTTCTAGTTCATT+CGG - chr5_3:13787596-13787615 Msa0800430:CDS 40.0%
AACCGAATGAACTAGAACCA+TGG + chr5_3:13787601-13787620 None:intergenic 40.0%
!! TCGGTTTTGATATCCACCAT+CGG - chr5_3:13787615-13787634 Msa0800430:CDS 40.0%
ATACCCAAAATACCCTTCAC+CGG + chr5_3:13787650-13787669 None:intergenic 40.0%
TATTGAGAACGTTCCTGACA+AGG - chr5_3:13787667-13787686 Msa0800430:CDS 40.0%
ATTGAGAACGTTCCTGACAA+GGG - chr5_3:13787668-13787687 Msa0800430:CDS 40.0%
GCTGATTGAGCTAAGACTTA+TGG + chr5_3:13788505-13788524 None:intergenic 40.0%
TGGTGTTCCAACAGAAACAT+TGG + chr5_3:13789066-13789085 None:intergenic 40.0%
CTCTATACCATGGACACATT+TGG + chr5_3:13789153-13789172 None:intergenic 40.0%
!! CTGTTGATAGCTCTATACCA+TGG + chr5_3:13789163-13789182 None:intergenic 40.0%
CATGGTATAGAGCTATCAAC+AGG - chr5_3:13789161-13789180 Msa0800430:CDS 40.0%
TATAGAGCTATCAACAGGAC+AGG - chr5_3:13789166-13789185 Msa0800430:CDS 40.0%
!! AACTACTGGTTTCTTGGTAG+AGG - chr5_3:13789571-13789590 Msa0800430:CDS 40.0%
CATTGAATGTGTTGCAGTTG+TGG - chr5_3:13789854-13789873 Msa0800430:intron 40.0%
! CCTTGTTTGGCTAAGATACT+TGG + chr5_3:13789959-13789978 None:intergenic 40.0%
CCAAGTATCTTAGCCAAACA+AGG - chr5_3:13789956-13789975 Msa0800430:intron 40.0%
!!! GTGTTTTGGTGATGATGGTT+TGG - chr5_3:13790003-13790022 Msa0800430:intron 40.0%
GGTTTGGGAAGAATCACATT+TGG - chr5_3:13790019-13790038 Msa0800430:intron 40.0%
ACAATAACCACTTACTGCGA+CGG + chr5_3:13790094-13790113 None:intergenic 40.0%
CACTGTCACCCAAATTATTG+TGG - chr5_3:13790317-13790336 Msa0800430:intron 40.0%
!! AATCACCAAGCACTGATTGT+TGG - chr5_3:13790667-13790686 Msa0800430:intron 40.0%
CAGCTGATACACTTTACAGT+TGG + chr5_3:13790847-13790866 None:intergenic 40.0%
ATGGACCCGATAATAACAAG+TGG - chr5_3:13790966-13790985 Msa0800430:intron 40.0%
!! ACCCTGCCACTTGTTATTAT+CGG + chr5_3:13790975-13790994 None:intergenic 40.0%
CATGCAGAAAACTTCATGAC+TGG - chr5_3:13791247-13791266 Msa0800430:intron 40.0%
! AAAACTTCATGACTGGCTAC+CGG - chr5_3:13791254-13791273 Msa0800430:intron 40.0%
TCTCGCGATCAAAAACTATC+CGG + chr5_3:13791276-13791295 None:intergenic 40.0%
GAAGGGGTAGATTGTATTTC+AGG + chr5_3:13791502-13791521 None:intergenic 40.0%
! TCTTTGAGGACCATTTGAAG+GGG + chr5_3:13791518-13791537 None:intergenic 40.0%
! GTCTTTGAGGACCATTTGAA+GGG + chr5_3:13791519-13791538 None:intergenic 40.0%
! AGTCTTTGAGGACCATTTGA+AGG + chr5_3:13791520-13791539 None:intergenic 40.0%
TGACTAGATGGAAGTCTTTG+AGG + chr5_3:13791532-13791551 None:intergenic 40.0%
TCACAATCACATAGGTGCCA+TGG - chr5_3:13787581-13787600 Msa0800430:exon 45.0%
!!! TGATCCGGTGAAGGGTATTT+TGG - chr5_3:13787643-13787662 Msa0800430:CDS 45.0%
!!! GATCCGGTGAAGGGTATTTT+GGG - chr5_3:13787644-13787663 Msa0800430:CDS 45.0%
TATTCACGACTTCCCTTGTC+AGG + chr5_3:13787683-13787702 None:intergenic 45.0%
!! ATCTGGTACGTGGTGTTATC+TGG + chr5_3:13787797-13787816 None:intergenic 45.0%
CACACACAAATGGAGGAGTT+GGG + chr5_3:13788568-13788587 None:intergenic 45.0%
ACACACACAAATGGAGGAGT+TGG + chr5_3:13788569-13788588 None:intergenic 45.0%
GCAACAAGATACGATGAAGC+TGG + chr5_3:13789086-13789105 None:intergenic 45.0%
!! ATACTGGGAGTGACTTGTTC+TGG - chr5_3:13789111-13789130 Msa0800430:intron 45.0%
GCAAGCTTGTGACCTAAGTA+GGG - chr5_3:13789257-13789276 Msa0800430:CDS 45.0%
CAAGCTTGTGACCTAAGTAG+GGG - chr5_3:13789258-13789277 Msa0800430:CDS 45.0%
!! AGGGGTATTAAGATGTCGGA+AGG - chr5_3:13789276-13789295 Msa0800430:CDS 45.0%
! GCAGGCAACATTTTTGCTAG+TGG + chr5_3:13789459-13789478 None:intergenic 45.0%
CTCACATAAGCTGCTATTGC+AGG + chr5_3:13789477-13789496 None:intergenic 45.0%
ACACAGTGCTCTTCTTCATC+TGG - chr5_3:13789503-13789522 Msa0800430:intron 45.0%
AGTTGTGGGCAAGTTCAAAC+AGG - chr5_3:13789869-13789888 Msa0800430:intron 45.0%
GTTGTGGGCAAGTTCAAACA+GGG - chr5_3:13789870-13789889 Msa0800430:intron 45.0%
TTGTGGGCAAGTTCAAACAG+GGG - chr5_3:13789871-13789890 Msa0800430:intron 45.0%
! AGTTCAAACAGGGGCTTTTC+TGG - chr5_3:13789880-13789899 Msa0800430:intron 45.0%
! AAACAGGGGCTTTTCTGGAT+GGG - chr5_3:13789885-13789904 Msa0800430:intron 45.0%
CCTAGTCCAAACAGACCATT+TGG + chr5_3:13789917-13789936 None:intergenic 45.0%
CCAAATGGTCTGTTTGGACT+AGG - chr5_3:13789914-13789933 Msa0800430:intron 45.0%
TGCGACGGCCTAATATTGAA+TGG + chr5_3:13790079-13790098 None:intergenic 45.0%
!! CCTTTGAGGTTAATTTGGGC+AGG + chr5_3:13790199-13790218 None:intergenic 45.0%
CCTGCCCAAATTAACCTCAA+AGG - chr5_3:13790196-13790215 Msa0800430:intron 45.0%
GTCACCCAAATTATTGTGGG+AGG - chr5_3:13790321-13790340 Msa0800430:intron 45.0%
TGCATTGAACTCCAGATCAG+CGG + chr5_3:13790352-13790371 None:intergenic 45.0%
ACCCGATAATAACAAGTGGC+AGG - chr5_3:13790970-13790989 Msa0800430:intron 45.0%
!! CCCTGCCACTTGTTATTATC+GGG + chr5_3:13790974-13790993 None:intergenic 45.0%
CCCGATAATAACAAGTGGCA+GGG - chr5_3:13790971-13790990 Msa0800430:intron 45.0%
! GAACATGACTCTAGGTTGGA+AGG - chr5_3:13791294-13791313 Msa0800430:intron 45.0%
ACCTGCATTAGCATTTACGG+TGG - chr5_3:13791567-13791586 Msa0800430:CDS 45.0%
!!! AATTTTAAACTAATAAAAAA+GGG + chr5_3:13788762-13788781 None:intergenic 5.0%
!!! AAATTTTAAACTAATAAAAA+AGG + chr5_3:13788763-13788782 None:intergenic 5.0%
!!! AAAATTCATTTTTTTTTTAA+TGG - chr5_3:13788808-13788827 Msa0800430:CDS 5.0%
!!! AAATTCATTTTTTTTTTAAT+GGG - chr5_3:13788809-13788828 Msa0800430:CDS 5.0%
!!! CCACCATCGGTTTTCTGATC+CGG - chr5_3:13787628-13787647 Msa0800430:CDS 50.0%
TCACCGGATCAGAAAACCGA+TGG + chr5_3:13787634-13787653 None:intergenic 50.0%
! TCGGTTTTCTGATCCGGTGA+AGG - chr5_3:13787634-13787653 Msa0800430:CDS 50.0%
! CGGTTTTCTGATCCGGTGAA+GGG - chr5_3:13787635-13787654 Msa0800430:CDS 50.0%
CCGAAAAACACGGTCTCTGT+GGG + chr5_3:13787720-13787739 None:intergenic 50.0%
! CCCACAGAGACCGTGTTTTT+CGG - chr5_3:13787717-13787736 Msa0800430:CDS 50.0%
! CCACAGAGACCGTGTTTTTC+GGG - chr5_3:13787718-13787737 Msa0800430:CDS 50.0%
! CACAGAGACCGTGTTTTTCG+GGG - chr5_3:13787719-13787738 Msa0800430:CDS 50.0%
CGCAAGCTTGTGACCTAAGT+AGG - chr5_3:13789256-13789275 Msa0800430:CDS 50.0%
CAGTGCTCTTCTTCATCTGG+TGG - chr5_3:13789506-13789525 Msa0800430:intron 50.0%
! CAAACAGGGGCTTTTCTGGA+TGG - chr5_3:13789884-13789903 Msa0800430:intron 50.0%
! AACAGGGGCTTTTCTGGATG+GGG - chr5_3:13789886-13789905 Msa0800430:intron 50.0%
GCAGCTCCAAATGGTCTGTT+TGG - chr5_3:13789908-13789927 Msa0800430:intron 50.0%
TATTAGGCCGTCGCAGTAAG+TGG - chr5_3:13790084-13790103 Msa0800430:CDS 50.0%
GATCGCGAGAACATGACTCT+AGG - chr5_3:13791286-13791305 Msa0800430:intron 50.0%
GCGAGAACATGACTCTAGGT+TGG - chr5_3:13791290-13791309 Msa0800430:intron 50.0%
GCCACCGTAAATGCTAATGC+AGG + chr5_3:13791571-13791590 None:intergenic 50.0%
CCGGATCAGAAAACCGATGG+TGG + chr5_3:13787631-13787650 None:intergenic 55.0%
CCCGAAAAACACGGTCTCTG+TGG + chr5_3:13787721-13787740 None:intergenic 55.0%
!!! GAGACCGTGTTTTTCGGGGT+CGG - chr5_3:13787723-13787742 Msa0800430:CDS 55.0%
GGGAGGAAATTCCGCTGATC+TGG - chr5_3:13790338-13790357 Msa0800430:intron 55.0%
CATAGCAGGAGACACAGCTG+GGG + chr5_3:13791470-13791489 None:intergenic 55.0%
CCATAGCAGGAGACACAGCT+GGG + chr5_3:13791471-13791490 None:intergenic 55.0%
AGCTGTGTCTCCTGCTATGG+CGG - chr5_3:13791471-13791490 Msa0800430:CDS 55.0%
TCAGGATTCACCGCCATAGC+AGG + chr5_3:13791484-13791503 None:intergenic 55.0%
GACGCCGACCCCGAAAAACA+CGG + chr5_3:13787730-13787749 None:intergenic 60.0%
CTGGATGGGGCAGCTCCAAA+TGG - chr5_3:13789899-13789918 Msa0800430:intron 60.0%
CCCAGCTGTGTCTCCTGCTA+TGG - chr5_3:13791468-13791487 Msa0800430:CDS 60.0%
GCCATAGCAGGAGACACAGC+TGG + chr5_3:13791472-13791491 None:intergenic 60.0%
GGGGCGTGCGATCGGTTAAC+AGG + chr5_3:13791451-13791470 None:intergenic 65.0%
ACACAGCTGGGGCGTGCGAT+CGG + chr5_3:13791459-13791478 None:intergenic 65.0%
CGGGGTCGGCGTCTTGCTGA+CGG - chr5_3:13787737-13787756 Msa0800430:CDS 70.0%
GGTCGGCGTCTTGCTGACGG+TGG - chr5_3:13787740-13787759 Msa0800430:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 13787327 13791890 13787327 ID=Msa0800430;Name=Msa0800430
chr5_3 mRNA 13787327 13791890 13787327 ID=Msa0800430-mRNA-1;Parent=Msa0800430;Name=Msa0800430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=173|1|1|1|1|1|10|266|527
chr5_3 exon 13787327 13787795 13787327 ID=Msa0800430-mRNA-1:exon:5801;Parent=Msa0800430-mRNA-1
chr5_3 exon 13787892 13787963 13787892 ID=Msa0800430-mRNA-1:exon:5800;Parent=Msa0800430-mRNA-1
chr5_3 exon 13788065 13788125 13788065 ID=Msa0800430-mRNA-1:exon:5799;Parent=Msa0800430-mRNA-1
chr5_3 exon 13788225 13788318 13788225 ID=Msa0800430-mRNA-1:exon:5798;Parent=Msa0800430-mRNA-1
chr5_3 exon 13788602 13788681 13788602 ID=Msa0800430-mRNA-1:exon:5797;Parent=Msa0800430-mRNA-1
chr5_3 exon 13788780 13788915 13788780 ID=Msa0800430-mRNA-1:exon:5796;Parent=Msa0800430-mRNA-1
chr5_3 exon 13789119 13789346 13789119 ID=Msa0800430-mRNA-1:exon:5795;Parent=Msa0800430-mRNA-1
chr5_3 exon 13789557 13789798 13789557 ID=Msa0800430-mRNA-1:exon:5794;Parent=Msa0800430-mRNA-1
chr5_3 exon 13790030 13790165 13790030 ID=Msa0800430-mRNA-1:exon:5793;Parent=Msa0800430-mRNA-1
chr5_3 exon 13791386 13791890 13791386 ID=Msa0800430-mRNA-1:exon:5792;Parent=Msa0800430-mRNA-1
chr5_3 five_prime_UTR 13791718 13791890 13791718 ID=Msa0800430-mRNA-1:five_prime_utr;Parent=Msa0800430-mRNA-1
chr5_3 CDS 13791386 13791717 13791386 ID=Msa0800430-mRNA-1:cds;Parent=Msa0800430-mRNA-1
chr5_3 CDS 13790030 13790165 13790030 ID=Msa0800430-mRNA-1:cds;Parent=Msa0800430-mRNA-1
chr5_3 CDS 13789557 13789798 13789557 ID=Msa0800430-mRNA-1:cds;Parent=Msa0800430-mRNA-1
chr5_3 CDS 13789119 13789346 13789119 ID=Msa0800430-mRNA-1:cds;Parent=Msa0800430-mRNA-1
chr5_3 CDS 13788780 13788915 13788780 ID=Msa0800430-mRNA-1:cds;Parent=Msa0800430-mRNA-1
chr5_3 CDS 13788602 13788681 13788602 ID=Msa0800430-mRNA-1:cds;Parent=Msa0800430-mRNA-1
chr5_3 CDS 13788225 13788318 13788225 ID=Msa0800430-mRNA-1:cds;Parent=Msa0800430-mRNA-1
chr5_3 CDS 13788065 13788125 13788065 ID=Msa0800430-mRNA-1:cds;Parent=Msa0800430-mRNA-1
chr5_3 CDS 13787892 13787963 13787892 ID=Msa0800430-mRNA-1:cds;Parent=Msa0800430-mRNA-1
chr5_3 CDS 13787593 13787795 13787593 ID=Msa0800430-mRNA-1:cds;Parent=Msa0800430-mRNA-1
chr5_3 three_prime_UTR 13787327 13787592 13787327 ID=Msa0800430-mRNA-1:three_prime_utr;Parent=Msa0800430-mRNA-1
Gene Sequence

>Msa0800430

ATGGCTTTTCTTTCTATCTCCTACGAAACCCATAATTCTTTATATGTTTCAGTGTTATTAACGTTAATACTATGTTTAATTTCACAATCACATAGGTGCCATGGTTCTAGTTCATTCGGTTTTGATATCCACCATCGGTTTTCTGATCCGGTGAAGGGTATTTTGGGTATTGAGAACGTTCCTGACAAGGGAAGTCGTGAATACTATGTTGCTATGGCCCACAGAGACCGTGTTTTTCGGGGTCGGCGTCTTGCTGACGGTGGTGATGTTGATCAGAAGCTTCTTACGTTTTCTCCAGATAACACCACGTACCAGATTAGTTTGTTTGGATATTTGCATTTTGCCAATGTTTCTGTTGGAACACCAGCTTCATCGTATCTTGTTGCATTAGATACTGGGAGTGACTTGTTCTGGCTCCCTTGCAATTGTACCAAATGTGTCCATGGTATAGAGCTATCAACAGGACAGAAAATTGCTTTTAATATCTATGATAACAAAGAATCATCCACTAGCAAAAATGTTGCCTGCAATAGCAGCTTATGTGAGCAGAAGACACAGTGCTCTTCTTCATCTGGTGGCACTTGTCCATATCAAGTTGAATATCTATCAGAAAATACTTCAACTACTGGTTTCTTGGTAGAGGATGTGTTGCACCTAATTACAGATAATGATGATCAAACTCAACATGCTAACCCACTAATTACTTTTGGTTGTGGGCAAGTTCAAACAGGGGCTTTTCTGGATGGGGCAGCTCCAAATGGTCTGTTTGGACTAGGAATGAGTGATGTATCTGTTCCAAGTATCTTAGCCAAACAAGGGCTAACTTCAAATTCCTTTTCAATGTGTTTTGGTGATGATGGTTTGGGAAGAATCACATTTGGGGATAATAATAGTAGCTTGGACCAAGGAAAAACACCATTCAATATTAGGCCGTCGCATTCAACTTACAACATCACTGTCACCCAAATTATTGTGGGAGGAAATTCCGCTGATCTGGAGTTCAATGCAATATTCGATACTGGTACCTCATTTACATACTTAAACAGCCCGGCTTATAAGCAAATTACTCAAAGTTTTGATTCAAAAATTAAACTACAAAGGCATTCATTTTCTGATTCTGATGATCTTCCCTTTGAGTACTGCTATGACTTAAGAACAAACCAGACAATTGAAGTTCCCAATATTAACTTGACGATGAAAGGTGGAGACAATTATTTTGTCATGGACCCGATAATAACAAGTGGCAGGGGTGTTAACAATGTTCTTTGTTTGGCTGTTTTGAAAAGCAACAATGTGAATATCATTGGACAAAACTTCATGACTGGCTACCGGATAGTTTTTGATCGCGAGAACATGACTCTAGGTTGGAAGGAATCTAACTGTTATGATGATGAACTCTCGAGTTTACCTGTTAACCGATCGCACGCCCCAGCTGTGTCTCCTGCTATGGCGGTGAATCCTGAAATACAATCTACCCCTTCAAATGGTCCTCAAAGACTTCCATCTAGTCACTCATTTAAGAAAGAACCTGCATTAGCATTTACGGTGGCAATTATCCTGCTTTTAGCAAATTTTTTAGTATAG
Protein sequence

>Msa0800430

MAFLSISYETHNSLYVSVLLTLILCLISQSHRCHGSSSFGFDIHHRFSDPVKGILGIENVPDKGSREYYVAMAHRDRVFRGRRLADGGDVDQKLLTFSPDNTTYQISLFGYLHFANVSVGTPASSYLVALDTGSDLFWLPCNCTKCVHGIELSTGQKIAFNIYDNKESSTSKNVACNSSLCEQKTQCSSSSGGTCPYQVEYLSENTSTTGFLVEDVLHLITDNDDQTQHANPLITFGCGQVQTGAFLDGAAPNGLFGLGMSDVSVPSILAKQGLTSNSFSMCFGDDGLGRITFGDNNSSLDQGKTPFNIRPSHSTYNITVTQIIVGGNSADLEFNAIFDTGTSFTYLNSPAYKQITQSFDSKIKLQRHSFSDSDDLPFEYCYDLRTNQTIEVPNINLTMKGGDNYFVMDPIITSGRGVNNVLCLAVLKSNNVNIIGQNFMTGYRIVFDRENMTLGWKESNCYDDELSSLPVNRSHAPAVSPAMAVNPEIQSTPSNGPQRLPSSHSFKKEPALAFTVAIILLLANFLV*