AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0770740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0770740 MtrunA17_Chr5g0423921 97.170 212 6 0 1 212 1 212 5.54e-153 422
Msa0770740 MtrunA17_Chr3g0114751 74.299 214 47 4 5 212 6 217 2.63e-110 315
Msa0770740 MtrunA17_Chr2g0277981 67.327 202 64 2 13 212 5 206 2.94e-97 281
Msa0770740 MtrunA17_Chr8g0380801 66.667 204 63 3 14 212 8 211 5.48e-88 258
Msa0770740 MtrunA17_Chr4g0042721 44.041 193 102 2 26 212 24 216 6.02e-60 187
Msa0770740 MtrunA17_Chr6g0453521 41.209 182 100 3 38 212 31 212 4.32e-51 164
Msa0770740 MtrunA17_Chr8g0380821 71.171 111 31 1 103 212 2 112 6.47e-51 160
Msa0770740 MtrunA17_Chr5g0417891 34.272 213 130 5 8 212 9 219 5.48e-42 141
Msa0770740 MtrunA17_Chr7g0217911 39.583 144 87 0 69 212 5 148 3.32e-40 134
Msa0770740 MtrunA17_Chr5g0417901 31.308 214 145 2 1 212 1 214 1.07e-38 132
Msa0770740 MtrunA17_Chr5g0417931 34.123 211 129 5 12 212 13 223 2.40e-32 116
Msa0770740 MtrunA17_Chr1g0204631 27.000 200 133 6 16 208 13 206 1.02e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0770740 AT1G09580.1 61.538 208 77 2 8 212 10 217 6.66e-94 273
Msa0770740 AT1G21900.1 63.768 207 68 4 11 212 12 216 3.55e-91 266
Msa0770740 AT1G57620.1 60.488 205 75 3 11 212 11 212 2.16e-89 262
Msa0770740 AT3G10780.1 52.174 207 92 2 13 212 11 217 1.77e-66 204
Msa0770740 AT1G26690.1 39.437 213 118 2 11 212 2 214 1.79e-55 176
Msa0770740 AT1G14010.1 38.208 212 120 3 7 212 6 212 1.97e-53 171
Msa0770740 AT1G69460.1 38.756 209 118 3 10 212 10 214 1.39e-51 166
Msa0770740 AT2G03290.1 37.949 195 114 1 25 212 19 213 2.65e-48 157
Msa0770740 AT3G29070.1 37.629 194 115 2 25 212 32 225 1.44e-46 153
Msa0770740 AT2G03040.1 35.135 148 89 1 25 165 19 166 8.01e-30 108
Msa0770740 AT3G22845.1 25.234 214 147 5 1 208 1 207 2.64e-12 63.9

Find 64 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAATGCTTACTAACTTT+TGG 0.279932 5_2:-42186985 Msa0770740:three_prime_UTR
TGTGTAGCAGGAAGTTTCTT+TGG 0.290728 5_2:+42186668 None:intergenic
GAAATTATGTGGCATGCTTT+TGG 0.304500 5_2:-42188227 Msa0770740:CDS
GGGGCAACAGAACAGGGTTT+TGG 0.317088 5_2:+42191758 None:intergenic
TCGATGTGAGTGGCTCTTCT+TGG 0.318352 5_2:+42187020 None:intergenic
GTCAGCCTTGATTGGAAAAC+TGG 0.328485 5_2:-42188171 Msa0770740:CDS
GAAACTTCCTGCTACACATT+TGG 0.333338 5_2:-42186663 Msa0770740:three_prime_UTR
TTGCAGGTAACATCTCCTTT+TGG 0.356646 5_2:-42188315 Msa0770740:intron
CTGACACTTACACTACCTTC+TGG 0.357413 5_2:+42188189 None:intergenic
CGATTATCTAATTTATTTGA+AGG 0.366207 5_2:-42187942 Msa0770740:CDS
AAGAGCCACTCACATCGATT+AGG 0.379215 5_2:-42187015 Msa0770740:three_prime_UTR
TAGTTTCTGGATTGCAACTT+TGG 0.395311 5_2:-42187189 Msa0770740:CDS
TGGAATTTCAGCAAAGGATT+GGG 0.395382 5_2:-42188151 Msa0770740:CDS
CTGGAATTTCAGCAAAGGAT+TGG 0.405549 5_2:-42188152 Msa0770740:CDS
TGGTTGACCATTCCAAGTTC+AGG 0.407339 5_2:-42191538 Msa0770740:CDS
AGGGTGTTGAACTTGAAATC+AGG 0.420862 5_2:-42187994 Msa0770740:CDS
ACACATTTAGTTCCTGAACT+TGG 0.421337 5_2:+42191526 None:intergenic
GTGTAGCAGGAAGTTTCTTT+GGG 0.421942 5_2:+42186669 None:intergenic
ATTTGGAATGCTTTGATAGC+AGG 0.427948 5_2:-42186646 Msa0770740:three_prime_UTR
AGAGCCACTCACATCGATTA+GGG 0.442421 5_2:-42187014 Msa0770740:three_prime_UTR
AATGAGAGCACCAAAATGAT+AGG 0.448690 5_2:+42186739 None:intergenic
AATAATAAAACATACCTTTG+CGG 0.453832 5_2:+42191426 None:intergenic
TGGTGAACGTTGTTTCCAAA+AGG 0.464734 5_2:+42188300 None:intergenic
CAGGAAGCTCGAAGGAATAG+TGG 0.469265 5_2:-42187975 Msa0770740:CDS
TTGATAAATTAAGTTTGTGT+TGG 0.470583 5_2:+42191797 None:intergenic
AAGTTAGTAAGCATTCTGTT+AGG 0.476120 5_2:+42186989 None:intergenic
GTGTAAGTGTCAGCCTTGAT+TGG 0.480040 5_2:-42188179 Msa0770740:CDS
TACTATGTTGTAACTGATGA+AGG 0.487186 5_2:-42191463 Msa0770740:CDS
TATAGAGCAGCTATGACAAC+TGG 0.487758 5_2:-42186849 Msa0770740:three_prime_UTR
AAGCATTCCAAATGTGTAGC+AGG 0.488770 5_2:+42186656 None:intergenic
GAGAATCTAGTTGAGGCAAA+AGG 0.493384 5_2:-42187074 Msa0770740:three_prime_UTR
GAGGATCCACGTTGCAGTGA+GGG 0.499621 5_2:-42186622 Msa0770740:three_prime_UTR
TGGTTTAGTATCATGTCCCT+TGG 0.503070 5_2:-42187223 Msa0770740:CDS
TTTAGAAGTTTAGGGAGTAT+GGG 0.503261 5_2:+42186592 None:intergenic
AATTTGAACATCATTGATGC+AGG 0.508676 5_2:+42186694 None:intergenic
TGACACTTACACTACCTTCT+GGG 0.510439 5_2:+42188190 None:intergenic
AAACAAATGCTCGAGTCGCT+TGG 0.510777 5_2:-42187243 Msa0770740:CDS
TTTAGTTCCTGAACTTGGAA+TGG 0.516063 5_2:+42191531 None:intergenic
TGCCACATAATTTCCACTCT+CGG 0.522318 5_2:+42188236 None:intergenic
AGTTGAGGCAAAAGGAAACT+TGG 0.530434 5_2:-42187066 Msa0770740:three_prime_UTR
AAACTAAAACGCAGAGACCA+AGG 0.543213 5_2:+42187206 None:intergenic
GAAAACTGGAATTTCAGCAA+AGG 0.546642 5_2:-42188157 Msa0770740:CDS
GCATTTACAACTACCGAGAG+TGG 0.562957 5_2:-42188249 Msa0770740:CDS
TTTGGAATGCTTTGATAGCA+GGG 0.574268 5_2:-42186645 Msa0770740:three_prime_UTR
TCAAATAAATTAGATAATCG+TGG 0.574741 5_2:+42187945 None:intergenic
CAAACTATGAAGTTAAGAGA+TGG 0.574973 5_2:-42191631 Msa0770740:exon
GAATGCTTTGATAGCAGGGG+AGG 0.577306 5_2:-42186641 Msa0770740:three_prime_UTR
ATAAATTAGATAATCGTGGA+TGG 0.583572 5_2:+42187949 None:intergenic
TACCGAGAGTGGAAATTATG+TGG 0.589093 5_2:-42188238 Msa0770740:CDS
AACTAAAACGCAGAGACCAA+GGG 0.592971 5_2:+42187207 None:intergenic
ATACCTTTGCGGAGATAGTG+TGG 0.599146 5_2:+42191437 None:intergenic
AAAATCTTATAGTATTCAAG+TGG 0.605113 5_2:+42186801 None:intergenic
CTTGAAATCAGGAAGCTCGA+AGG 0.630601 5_2:-42187983 Msa0770740:CDS
TTGGAATGCTTTGATAGCAG+GGG 0.633139 5_2:-42186644 Msa0770740:three_prime_UTR
CATAATGAAAATGTTACACA+AGG 0.640271 5_2:-42188279 Msa0770740:CDS
TGCAAAGAAAGAAAAGATTG+AGG 0.640940 5_2:-42188121 Msa0770740:intron
GCTACAGGGAAGCAACGATG+AGG 0.655281 5_2:-42187279 Msa0770740:intron
TCTCCACACTATCTCCGCAA+AGG 0.656789 5_2:-42191440 Msa0770740:intron
CTACAGGGAAGCAACGATGA+GGG 0.656889 5_2:-42187278 Msa0770740:intron
GGAGGATCCACGTTGCAGTG+AGG 0.668284 5_2:-42186623 Msa0770740:three_prime_UTR
ATGGAAGGAAAACACCCAGA+AGG 0.668528 5_2:-42188204 Msa0770740:CDS
GGCGCCCTAATCGATGTGAG+TGG 0.671982 5_2:+42187010 None:intergenic
TGCACACCCTCACTGCAACG+TGG 0.699686 5_2:+42186616 None:intergenic
AAAAGAGTGAAATTCAAGAG+GGG 0.711512 5_2:+42186909 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTTATTGTTTTTATG+GGG + chr5_2:42186614-42186633 None:intergenic 10.0%
!!! GTAATATTTATTGTTTTTAT+GGG + chr5_2:42186615-42186634 None:intergenic 10.0%
!!! TTAGAATATATATTTTCAAT+AGG - chr5_2:42187465-42187484 Msa0770740:intron 10.0%
!!! TTTAAAATCACATATATAAT+TGG - chr5_2:42189899-42189918 Msa0770740:intron 10.0%
!!! ACAATTAAATTGATAATTTA+AGG - chr5_2:42189972-42189991 Msa0770740:intron 10.0%
!!! CAATTAAATTGATAATTTAA+GGG - chr5_2:42189973-42189992 Msa0770740:intron 10.0%
!!! TATTTAATTTATATTTTTGC+AGG - chr5_2:42190018-42190037 Msa0770740:intron 10.0%
!!! AATATTTATTGTTTTTATGG+GGG + chr5_2:42186613-42186632 None:intergenic 15.0%
!!! GGTAATATTTATTGTTTTTA+TGG + chr5_2:42186616-42186635 None:intergenic 15.0%
!! AATTATTGTTAGAATTAGAT+CGG - chr5_2:42187188-42187207 Msa0770740:CDS 15.0%
!! TTATCACTTAATTACTTAAA+GGG + chr5_2:42187375-42187394 None:intergenic 15.0%
!! TTTAAGTAATTAAGTGATAA+GGG - chr5_2:42187375-42187394 Msa0770740:intron 15.0%
!! TTCAAAATGCAAAATATATA+GGG - chr5_2:42187551-42187570 Msa0770740:intron 15.0%
!! GATTAATTATTGTTAAATGA+CGG - chr5_2:42187692-42187711 Msa0770740:intron 15.0%
!! TTGAAACTTAAATAACTTAA+GGG + chr5_2:42187808-42187827 None:intergenic 15.0%
!!! TTTGAAACTTAAATAACTTA+AGG + chr5_2:42187809-42187828 None:intergenic 15.0%
!!! AAGTTATTTAAGTTTCAAAT+TGG - chr5_2:42187810-42187829 Msa0770740:intron 15.0%
!!! AATTTGATTTTGAAGAAAAA+TGG - chr5_2:42188496-42188515 Msa0770740:intron 15.0%
!!! TTTTTTTTCATACTTAATTC+TGG - chr5_2:42188591-42188610 Msa0770740:intron 15.0%
!!! TTTAAGTTTTATGTTTGTAT+CGG + chr5_2:42188820-42188839 None:intergenic 15.0%
!!! AACTTTTGATTGTTTTTTTA+AGG + chr5_2:42188862-42188881 None:intergenic 15.0%
!! ATAGTAAATTGTTATGTTAT+TGG - chr5_2:42188915-42188934 Msa0770740:intron 15.0%
!!! TTTTGTTTGTTGAAATTATA+TGG - chr5_2:42189055-42189074 Msa0770740:intron 15.0%
!!! TTTGTTTGTTGAAATTATAT+GGG - chr5_2:42189056-42189075 Msa0770740:intron 15.0%
!!! ATGTACATTCTTTAATTTAA+AGG - chr5_2:42189263-42189282 Msa0770740:intron 15.0%
!! ATATAAGCAAAACATTAATA+TGG + chr5_2:42190315-42190334 None:intergenic 15.0%
!!! CTCTGAAAATATTTTAAATT+TGG - chr5_2:42191793-42191812 Msa0770740:five_prime_UTR 15.0%
!! TTGATAAATTAAGTTTGTGT+TGG + chr5_2:42186555-42186574 None:intergenic 20.0%
!! AATAATAAAACATACCTTTG+CGG + chr5_2:42186926-42186945 None:intergenic 20.0%
!!! TAAATATTTACTCTTTTGTC+CGG + chr5_2:42187123-42187142 None:intergenic 20.0%
!! AACGTTATATACTAAGAAAA+GGG + chr5_2:42187263-42187282 None:intergenic 20.0%
!! ATAAAAAAGTTTACCAACAA+TGG - chr5_2:42187322-42187341 Msa0770740:intron 20.0%
!! CTTATCACTTAATTACTTAA+AGG + chr5_2:42187376-42187395 None:intergenic 20.0%
!! CTTTAAGTAATTAAGTGATA+AGG - chr5_2:42187374-42187393 Msa0770740:intron 20.0%
!! TTAAGTAATTAAGTGATAAG+GGG - chr5_2:42187376-42187395 Msa0770740:intron 20.0%
!! TTCAATAGGTGAATTAAAAT+TGG - chr5_2:42187479-42187498 Msa0770740:intron 20.0%
!! GTTCAAAATGCAAAATATAT+AGG - chr5_2:42187550-42187569 Msa0770740:intron 20.0%
!!! TTTTTATGTTACCATGTTAT+AGG + chr5_2:42187731-42187750 None:intergenic 20.0%
!! AACATGGTAACATAAAAAAA+AGG - chr5_2:42187733-42187752 Msa0770740:intron 20.0%
!! GATGTCTGTAATAATAATAA+TGG + chr5_2:42188026-42188045 None:intergenic 20.0%
!!! ACATTTTTGTTGATTAGATT+TGG + chr5_2:42188054-42188073 None:intergenic 20.0%
!!! CAGAATCATTTATTTTGATT+CGG - chr5_2:42188256-42188275 Msa0770740:CDS 20.0%
!! TTTAGATAGGATTTGAAAAT+GGG - chr5_2:42188325-42188344 Msa0770740:intron 20.0%
!!! TACTTTAAAATAGTGTTGTT+TGG - chr5_2:42188381-42188400 Msa0770740:intron 20.0%
!! AAAAATGCTTTCATGTAAAA+TGG + chr5_2:42188438-42188457 None:intergenic 20.0%
!! GATACAAACATAAAACTTAA+AGG - chr5_2:42188819-42188838 Msa0770740:intron 20.0%
!! ATTGTTATGTTATTGGAATT+TGG - chr5_2:42188922-42188941 Msa0770740:intron 20.0%
!!! TGCTAGTTTTTAATTTTCAA+TGG - chr5_2:42188971-42188990 Msa0770740:intron 20.0%
!!! TAAAATTGTGGTTCTAAATT+CGG + chr5_2:42189134-42189153 None:intergenic 20.0%
!!! ACATAAAGCATTTAAAATTG+TGG + chr5_2:42189146-42189165 None:intergenic 20.0%
!! TAAATGCTTTATGTTAATCT+TGG - chr5_2:42189152-42189171 Msa0770740:intron 20.0%
!! TTAAAGAATGTACATAAACT+TGG + chr5_2:42189258-42189277 None:intergenic 20.0%
!! AAATCACATATATAATTGGT+AGG - chr5_2:42189903-42189922 Msa0770740:intron 20.0%
!!! TGTAAAAAGTATTACATAGT+CGG + chr5_2:42189939-42189958 None:intergenic 20.0%
!! TCAAATAAATTAGATAATCG+TGG + chr5_2:42190407-42190426 None:intergenic 20.0%
!! CGATTATCTAATTTATTTGA+AGG - chr5_2:42190407-42190426 Msa0770740:intron 20.0%
!!! TTTTAAAGTTTGATTAGATC+AGG - chr5_2:42190453-42190472 Msa0770740:intron 20.0%
!!! TTTAAAGTTTGATTAGATCA+GGG - chr5_2:42190454-42190473 Msa0770740:intron 20.0%
!! GAGAATTTAATTAATACATG+CGG + chr5_2:42190771-42190790 None:intergenic 20.0%
!! AAAATCTTATAGTATTCAAG+TGG + chr5_2:42191551-42191570 None:intergenic 20.0%
!!! TTAAAATATTTTCAGAGTCT+AGG + chr5_2:42191790-42191809 None:intergenic 20.0%
!! TTCTAAAAACTGAAGCTATA+TGG - chr5_2:42186791-42186810 Msa0770740:three_prime_UTR 25.0%
! TCTAAACTAAGCAATGATTA+GGG + chr5_2:42186962-42186981 None:intergenic 25.0%
! ATCTAAACTAAGCAATGATT+AGG + chr5_2:42186963-42186982 None:intergenic 25.0%
!! AAATATTTACTCTTTTGTCC+GGG + chr5_2:42187122-42187141 None:intergenic 25.0%
! ACTTTGTATAGATCTTCAAT+AGG + chr5_2:42187234-42187253 None:intergenic 25.0%
! TTGAAGATCTATACAAAGTT+AGG - chr5_2:42187235-42187254 Msa0770740:CDS 25.0%
! TGAAGATCTATACAAAGTTA+GGG - chr5_2:42187236-42187255 Msa0770740:CDS 25.0%
! CAACGTTATATACTAAGAAA+AGG + chr5_2:42187264-42187283 None:intergenic 25.0%
! GTATATAACGTTGTTAAAAC+AGG - chr5_2:42187271-42187290 Msa0770740:CDS 25.0%
! TAGGTGAATTAAAATTGGTT+TGG - chr5_2:42187484-42187503 Msa0770740:intron 25.0%
!! AGGTGAATTAAAATTGGTTT+GGG - chr5_2:42187485-42187504 Msa0770740:intron 25.0%
! AAACAAAACAAAAAACGTGA+GGG - chr5_2:42187528-42187547 Msa0770740:intron 25.0%
! TAATTATTGTTAAATGACGG+TGG - chr5_2:42187695-42187714 Msa0770740:intron 25.0%
! AGTACAAACGTAAAACTTAA+AGG + chr5_2:42187777-42187796 None:intergenic 25.0%
! TCTGTTAAAAACTGATTATG+TGG - chr5_2:42187880-42187899 Msa0770740:intron 25.0%
!! GTTTTCATTCTTCTTCTTTA+AGG + chr5_2:42187948-42187967 None:intergenic 25.0%
!! ATAATAATGGTAATGCTAAC+CGG + chr5_2:42188013-42188032 None:intergenic 25.0%
!!! TTGATTTGAGTTGAGTTTTT+GGG + chr5_2:42188090-42188109 None:intergenic 25.0%
!!! TTTGATTTGAGTTGAGTTTT+TGG + chr5_2:42188091-42188110 None:intergenic 25.0%
!! AAAGTTAACATTTTACCATC+TGG + chr5_2:42188124-42188143 None:intergenic 25.0%
! CGAATCAAAATAAATGATTC+TGG + chr5_2:42188258-42188277 None:intergenic 25.0%
! CTTTAGATAGGATTTGAAAA+TGG - chr5_2:42188324-42188343 Msa0770740:intron 25.0%
!! TTTAAAGTAGTGAACCATTT+AGG + chr5_2:42188370-42188389 None:intergenic 25.0%
!!! ATGAAAGCATTTTTCTGAAT+TGG - chr5_2:42188444-42188463 Msa0770740:intron 25.0%
!!! TTTTTAACTGTGACAGAAAA+GGG - chr5_2:42188734-42188753 Msa0770740:intron 25.0%
!! TTTCAAACATTGATTGAAGT+TGG - chr5_2:42188880-42188899 Msa0770740:intron 25.0%
!! TTTCTATTTTGTGAGTTTGA+CGG - chr5_2:42189292-42189311 Msa0770740:intron 25.0%
!!! TTTTGGTTCAGAAAAATCTA+TGG + chr5_2:42189333-42189352 None:intergenic 25.0%
!! GATAGAGAAAATAAGCATTT+TGG + chr5_2:42189350-42189369 None:intergenic 25.0%
!!! AATGCTTATTTTCTCTATCT+AGG - chr5_2:42189351-42189370 Msa0770740:intron 25.0%
!!! ATGCTTATTTTCTCTATCTA+GGG - chr5_2:42189352-42189371 Msa0770740:intron 25.0%
!!! TACAATATTTTTTCCCAAAC+AGG - chr5_2:42189463-42189482 Msa0770740:intron 25.0%
!!! TCACTTATAACTTTTGAGTT+TGG - chr5_2:42189613-42189632 Msa0770740:intron 25.0%
! CTTAAATTATACTTGATGTC+TGG + chr5_2:42189808-42189827 None:intergenic 25.0%
!! CTTGTGTAACATTTTCATTA+TGG + chr5_2:42190072-42190091 None:intergenic 25.0%
! CATAATGAAAATGTTACACA+AGG - chr5_2:42190070-42190089 Msa0770740:intron 25.0%
!! TTTCTTTTGTGATGTATGAA+TGG - chr5_2:42190281-42190300 Msa0770740:intron 25.0%
!!! CTTATATGATTTGTTTGCTT+TGG - chr5_2:42190328-42190347 Msa0770740:intron 25.0%
! ATAAATTAGATAATCGTGGA+TGG + chr5_2:42190403-42190422 None:intergenic 25.0%
! GGTGTATCATTAATTTCATA+CGG - chr5_2:42190475-42190494 Msa0770740:intron 25.0%
! GAACTTAAAAAATGCATTAG+AGG + chr5_2:42190554-42190573 None:intergenic 25.0%
!!! TTTTTAAGTTCTCCCAAATT+AGG - chr5_2:42190563-42190582 Msa0770740:intron 25.0%
!!! TTTTAAGTTCTCCCAAATTA+GGG - chr5_2:42190564-42190583 Msa0770740:intron 25.0%
! ATACAAAATTCCCCTAATTT+GGG + chr5_2:42190578-42190597 None:intergenic 25.0%
! AATACAAAATTCCCCTAATT+TGG + chr5_2:42190579-42190598 None:intergenic 25.0%
! TATGTTTGGAAATTTAAGAG+GGG + chr5_2:42190639-42190658 None:intergenic 25.0%
! GTATGTTTGGAAATTTAAGA+GGG + chr5_2:42190640-42190659 None:intergenic 25.0%
! CAAACTGAAATCAAACTTAA+GGG + chr5_2:42190662-42190681 None:intergenic 25.0%
!!! AATCATTTTTTGTTTCCTAG+AGG + chr5_2:42190976-42190995 None:intergenic 25.0%
!! TTACTAACTTTTGGCAATAT+AGG - chr5_2:42191373-42191392 Msa0770740:intron 25.0%
! GGCAATATAGGAAAAAAATA+TGG - chr5_2:42191385-42191404 Msa0770740:intron 25.0%
! GGAAAAAAATATGGTTTGAA+TGG - chr5_2:42191394-42191413 Msa0770740:intron 25.0%
! AAAAAGAGTGAAATTCAAGA+GGG + chr5_2:42191444-42191463 None:intergenic 25.0%
!! CTTTTCTATTCCTATCATTT+TGG - chr5_2:42191600-42191619 Msa0770740:CDS 25.0%
CAAACTATGAAGTTAAGAGA+TGG - chr5_2:42186718-42186737 Msa0770740:three_prime_UTR 30.0%
TACTATGTTGTAACTGATGA+AGG - chr5_2:42186886-42186905 Msa0770740:three_prime_UTR 30.0%
! TTCTTTTGCATTCTTGTGAT+CGG - chr5_2:42187012-42187031 Msa0770740:three_prime_UTR 30.0%
ACTAGTGTGATCTATATAGA+AGG - chr5_2:42187151-42187170 Msa0770740:CDS 30.0%
CTAGTGTGATCTATATAGAA+GGG - chr5_2:42187152-42187171 Msa0770740:CDS 30.0%
CAAACAAAACAAAAAACGTG+AGG - chr5_2:42187527-42187546 Msa0770740:intron 30.0%
CGTATGAAAAAAATTCGACT+AGG - chr5_2:42187626-42187645 Msa0770740:intron 30.0%
ATGAAAAAAATTCGACTAGG+AGG - chr5_2:42187629-42187648 Msa0770740:intron 30.0%
TGAAAAAAATTCGACTAGGA+GGG - chr5_2:42187630-42187649 Msa0770740:intron 30.0%
ACTTTGACAGTAAAGGATAA+TGG + chr5_2:42187861-42187880 None:intergenic 30.0%
TTAACAGACTTTGACAGTAA+AGG + chr5_2:42187868-42187887 None:intergenic 30.0%
TAAGGATGAAAGTGATGATT+TGG + chr5_2:42187930-42187949 None:intergenic 30.0%
! TGCCATAATAACCCTTTTAA+GGG + chr5_2:42187990-42188009 None:intergenic 30.0%
AAGCTCAATCATTGATCAAA+AGG - chr5_2:42188151-42188170 Msa0770740:CDS 30.0%
AGCTCAATCATTGATCAAAA+GGG - chr5_2:42188152-42188171 Msa0770740:CDS 30.0%
TCTCAATTGTGTTACCATAA+TGG - chr5_2:42188226-42188245 Msa0770740:CDS 30.0%
! AGTAGTGATAGTGAATTTGA+AGG - chr5_2:42188283-42188302 Msa0770740:CDS 30.0%
!! ATGATAGTGAAGCTTTAGAT+AGG - chr5_2:42188312-42188331 Msa0770740:CDS 30.0%
TTAGAACATTGAGAACTTGT+TGG + chr5_2:42188409-42188428 None:intergenic 30.0%
! GCTTTCATGTAAAATGGATT+TGG + chr5_2:42188432-42188451 None:intergenic 30.0%
GAAGAAAAATGGCTATAGAA+TGG - chr5_2:42188507-42188526 Msa0770740:intron 30.0%
! AAATGGCTATAGAATGGTTT+TGG - chr5_2:42188513-42188532 Msa0770740:intron 30.0%
TAAGGATGAAGATGATGATT+TGG - chr5_2:42188675-42188694 Msa0770740:intron 30.0%
ACAGTTAAAAACTGCTTATG+TGG + chr5_2:42188725-42188744 None:intergenic 30.0%
!! GTTTTTAACTGTGACAGAAA+AGG - chr5_2:42188733-42188752 Msa0770740:intron 30.0%
! GTTTTATGTTTGTATCGGAT+CGG + chr5_2:42188815-42188834 None:intergenic 30.0%
ACTATATCAGATGAGATAGT+AGG + chr5_2:42188997-42189016 None:intergenic 30.0%
!!! TTACTGGTTTTCAGTTTTCA+TGG - chr5_2:42189200-42189219 Msa0770740:intron 30.0%
!! AAAACAGACATTTTGATCGA+GGG - chr5_2:42189231-42189250 Msa0770740:intron 30.0%
TTCAGAAAAATCTATGGATC+TGG + chr5_2:42189327-42189346 None:intergenic 30.0%
!! TGCTTATTTTCTCTATCTAG+GGG - chr5_2:42189353-42189372 Msa0770740:intron 30.0%
TTGGTATTCAGAAGCTTATT+AGG - chr5_2:42189400-42189419 Msa0770740:intron 30.0%
TGGTATTCAGAAGCTTATTA+GGG - chr5_2:42189401-42189420 Msa0770740:intron 30.0%
AGCTCATTGAAAACAACTTA+TGG - chr5_2:42189425-42189444 Msa0770740:intron 30.0%
GCTCATTGAAAACAACTTAT+GGG - chr5_2:42189426-42189445 Msa0770740:intron 30.0%
TGGTTTCATAAGGAGTTATT+TGG + chr5_2:42189517-42189536 None:intergenic 30.0%
!! CTATTTGGATTGGTTTCATA+AGG + chr5_2:42189527-42189546 None:intergenic 30.0%
! AAATTCCAGTTTTCCAATCA+AGG + chr5_2:42190186-42190205 None:intergenic 30.0%
TGCAAAGAAAGAAAAGATTG+AGG - chr5_2:42190228-42190247 Msa0770740:intron 30.0%
! ATTTGTTTGCTTTGGTTCAA+GGG - chr5_2:42190336-42190355 Msa0770740:intron 30.0%
! AATGCATTAGAGGAGAATTT+TGG + chr5_2:42190544-42190563 None:intergenic 30.0%
! TTTAAGTTCTCCCAAATTAG+GGG - chr5_2:42190565-42190584 Msa0770740:intron 30.0%
GGTATGTTTGGAAATTTAAG+AGG + chr5_2:42190641-42190660 None:intergenic 30.0%
! ATCAAACTTAAGGGTATGTT+TGG + chr5_2:42190653-42190672 None:intergenic 30.0%
CCAAACTGAAATCAAACTTA+AGG + chr5_2:42190663-42190682 None:intergenic 30.0%
! CCTTAAGTTTGATTTCAGTT+TGG - chr5_2:42190660-42190679 Msa0770740:intron 30.0%
ACTTGACCATTACTGAAATT+CGG + chr5_2:42190835-42190854 None:intergenic 30.0%
TACTTCACTAAATCGATAGT+TGG - chr5_2:42190872-42190891 Msa0770740:intron 30.0%
!! AGTTTTTGAGAATCTAGTTG+AGG - chr5_2:42191268-42191287 Msa0770740:intron 30.0%
AAGTTAGTAAGCATTCTGTT+AGG + chr5_2:42191363-42191382 None:intergenic 30.0%
! ACAGAATGCTTACTAACTTT+TGG - chr5_2:42191364-42191383 Msa0770740:intron 30.0%
AAAAGAGTGAAATTCAAGAG+GGG + chr5_2:42191443-42191462 None:intergenic 30.0%
CAAAAAGAGTGAAATTCAAG+AGG + chr5_2:42191445-42191464 None:intergenic 30.0%
! CTCTTGAATTTCACTCTTTT+TGG - chr5_2:42191443-42191462 Msa0770740:CDS 30.0%
AATTTGAACATCATTGATGC+AGG + chr5_2:42191658-42191677 None:intergenic 30.0%
! TTTAGAAGTTTAGGGAGTAT+GGG + chr5_2:42191760-42191779 None:intergenic 30.0%
!! TTTTAGAAGTTTAGGGAGTA+TGG + chr5_2:42191761-42191780 None:intergenic 30.0%
!! GTGCAACTTTTAGAAGTTTA+GGG + chr5_2:42191768-42191787 None:intergenic 30.0%
!!! GTAGTTTTGTCTCTTGCTTT+TGG + chr5_2:42186643-42186662 None:intergenic 35.0%
! TTTAGTTCCTGAACTTGGAA+TGG + chr5_2:42186821-42186840 None:intergenic 35.0%
! ACACATTTAGTTCCTGAACT+TGG + chr5_2:42186826-42186845 None:intergenic 35.0%
! TCTTTTGCATTCTTGTGATC+GGG - chr5_2:42187013-42187032 Msa0770740:three_prime_UTR 35.0%
AATATTTAAGCTAGCCCAGT+TGG - chr5_2:42187068-42187087 Msa0770740:three_prime_UTR 35.0%
GGATGTCATTAGTTAAGTGT+TGG - chr5_2:42187292-42187311 Msa0770740:intron 35.0%
TACTTGGATCAATCCATTGT+TGG + chr5_2:42187338-42187357 None:intergenic 35.0%
!! AATGGATTGATCCAAGTAGT+TGG - chr5_2:42187340-42187359 Msa0770740:intron 35.0%
!!! GAATTTTTTTCATACGCCAG+TGG + chr5_2:42187622-42187641 None:intergenic 35.0%
ATCCATATTGTATATCCCAC+AGG - chr5_2:42187657-42187676 Msa0770740:intron 35.0%
ATCCTGTGGGATATACAATA+TGG + chr5_2:42187662-42187681 None:intergenic 35.0%
GAAACTTAGTGCCTATAACA+TGG - chr5_2:42187717-42187736 Msa0770740:intron 35.0%
ACGTAAAACTTAAAGGATCC+CGG + chr5_2:42187770-42187789 None:intergenic 35.0%
CTGATTATGTGGTTGTTTAG+TGG - chr5_2:42187891-42187910 Msa0770740:intron 35.0%
!! AATAACCCTTTTAAGGGCAT+TGG + chr5_2:42187984-42188003 None:intergenic 35.0%
TGCCCTTAAAAGGGTTATTA+TGG - chr5_2:42187985-42188004 Msa0770740:CDS 35.0%
! GTGCCATAATAACCCTTTTA+AGG + chr5_2:42187991-42188010 None:intergenic 35.0%
TAAAAGGGTTATTATGGCAC+CGG - chr5_2:42187991-42188010 Msa0770740:CDS 35.0%
TCAAATCTTCAACATCCAGA+TGG - chr5_2:42188106-42188125 Msa0770740:intron 35.0%
ATGGGTCAGTATAAAGAGTT+CGG - chr5_2:42188343-42188362 Msa0770740:intron 35.0%
ATAAAGAGTTCGGTCCTAAA+TGG - chr5_2:42188353-42188372 Msa0770740:intron 35.0%
AGAAACTTCTGCAATGAGTA+TGG - chr5_2:42188563-42188582 Msa0770740:intron 35.0%
ATGAAGATGAGATGAAGATC+TGG - chr5_2:42188649-42188668 Msa0770740:intron 35.0%
TGAAGATGAGATGAAGATCT+GGG - chr5_2:42188650-42188669 Msa0770740:intron 35.0%
ACATAAAACTTAAAGGACCC+AGG - chr5_2:42188826-42188845 Msa0770740:intron 35.0%
CGGAAATAGGACTAAATAGA+CGG + chr5_2:42189114-42189133 None:intergenic 35.0%
!! GTGGTTCTAAATTCGGAAAT+AGG + chr5_2:42189127-42189146 None:intergenic 35.0%
! TCAATACGTAGGTCTTTTAC+TGG - chr5_2:42189184-42189203 Msa0770740:intron 35.0%
!! CAAAACAGACATTTTGATCG+AGG - chr5_2:42189230-42189249 Msa0770740:intron 35.0%
! ATGAAGAGTGGATAAGCTTT+TGG - chr5_2:42189381-42189400 Msa0770740:intron 35.0%
GGTATTCAGAAGCTTATTAG+GGG - chr5_2:42189402-42189421 Msa0770740:intron 35.0%
AAGTGCTTATGAACCTGTTT+GGG + chr5_2:42189479-42189498 None:intergenic 35.0%
TAAGTGCTTATGAACCTGTT+TGG + chr5_2:42189480-42189499 None:intergenic 35.0%
TGTGAGAACACTCATACAAT+AGG + chr5_2:42189752-42189771 None:intergenic 35.0%
! GAAATTATGTGGCATGCTTT+TGG - chr5_2:42190122-42190141 Msa0770740:intron 35.0%
GAAAACTGGAATTTCAGCAA+AGG - chr5_2:42190192-42190211 Msa0770740:intron 35.0%
TGGAATTTCAGCAAAGGATT+GGG - chr5_2:42190198-42190217 Msa0770740:intron 35.0%
! GATTTGTTTGCTTTGGTTCA+AGG - chr5_2:42190335-42190354 Msa0770740:intron 35.0%
TTCCATCCGAATTTCAGTAA+TGG - chr5_2:42190826-42190845 Msa0770740:intron 35.0%
TCGTGTAATGAAGATACTCA+AGG + chr5_2:42190935-42190954 None:intergenic 35.0%
! TTTCCTAGAGGAAGTATAAC+AGG + chr5_2:42190964-42190983 None:intergenic 35.0%
! TTTTTCCTTGACATTGCTAC+AGG - chr5_2:42191055-42191074 Msa0770740:intron 35.0%
! TTTTCCTTGACATTGCTACA+GGG - chr5_2:42191056-42191075 Msa0770740:intron 35.0%
! TAGTTTCTGGATTGCAACTT+TGG - chr5_2:42191160-42191179 Msa0770740:intron 35.0%
!! AATGAGAGCACCAAAATGAT+AGG + chr5_2:42191613-42191632 None:intergenic 35.0%
! ATTTGGAATGCTTTGATAGC+AGG - chr5_2:42191703-42191722 Msa0770740:five_prime_UTR 35.0%
! TTTGGAATGCTTTGATAGCA+GGG - chr5_2:42191704-42191723 Msa0770740:five_prime_UTR 35.0%
!! GGTGCAACTTTTAGAAGTTT+AGG + chr5_2:42191769-42191788 None:intergenic 35.0%
!!! GAACAGGGTTTTGGTTTCTT+GGG + chr5_2:42186585-42186604 None:intergenic 40.0%
!!! AGAACAGGGTTTTGGTTTCT+TGG + chr5_2:42186586-42186605 None:intergenic 40.0%
!! TTGTCTCTTGCTTTTGGTTG+AGG + chr5_2:42186637-42186656 None:intergenic 40.0%
ATCCAACTCCTTAACCAACT+GGG + chr5_2:42187085-42187104 None:intergenic 40.0%
GTTAAGGAGTTGGATGTACT+GGG - chr5_2:42187090-42187109 Msa0770740:three_prime_UTR 40.0%
CGGTGATGAATTGTAGAAGA+AGG - chr5_2:42187208-42187227 Msa0770740:CDS 40.0%
GGTCAAACTATCCAACTACT+TGG + chr5_2:42187354-42187373 None:intergenic 40.0%
AAGTGATAAGGGGTTCAATC+CGG - chr5_2:42187386-42187405 Msa0770740:intron 40.0%
TAATTTGAACCCGTGACGAA+GGG + chr5_2:42187426-42187445 None:intergenic 40.0%
ATAATTTGAACCCGTGACGA+AGG + chr5_2:42187427-42187446 None:intergenic 40.0%
!! AAAATTGGTTTGGGCCTCTT+TGG - chr5_2:42187494-42187513 Msa0770740:intron 40.0%
!! AAATTGGTTTGGGCCTCTTT+GGG - chr5_2:42187495-42187514 Msa0770740:intron 40.0%
! AGCCACATACATGATAGTGA+GGG + chr5_2:42187596-42187615 None:intergenic 40.0%
AAAAAAGGCCAAATACCTCC+CGG - chr5_2:42187748-42187767 Msa0770740:intron 40.0%
CGTAAAACTTAAAGGATCCC+GGG + chr5_2:42187769-42187788 None:intergenic 40.0%
GCAAACATTGTGCGACTTAA+AGG + chr5_2:42187837-42187856 None:intergenic 40.0%
!! GATTCTGGCTCTTTCCATTA+TGG + chr5_2:42188243-42188262 None:intergenic 40.0%
AACTTCTGCAATGAGTATGG+TGG - chr5_2:42188566-42188585 Msa0770740:intron 40.0%
! GAGATGAAGATCTGGGATTA+AGG - chr5_2:42188657-42188676 Msa0770740:intron 40.0%
TAAAACTTAAAGGACCCAGG+AGG - chr5_2:42188829-42188848 Msa0770740:intron 40.0%
! TTTAAGGCCAAATACCTCCT+GGG + chr5_2:42188846-42188865 None:intergenic 40.0%
!!! TTTTAAGGCCAAATACCTCC+TGG + chr5_2:42188847-42188866 None:intergenic 40.0%
AGAGAGATATGAGTTCGTTC+AGG + chr5_2:42189020-42189039 None:intergenic 40.0%
GGTGCAACAATTCAATACGT+AGG - chr5_2:42189173-42189192 Msa0770740:intron 40.0%
! CTTCTATGGGCTATTTGGAT+TGG + chr5_2:42189537-42189556 None:intergenic 40.0%
TCCAAATAGCCCATAGAAGA+TGG - chr5_2:42189538-42189557 Msa0770740:intron 40.0%
! ACCATCTTCTATGGGCTATT+TGG + chr5_2:42189542-42189561 None:intergenic 40.0%
AATAGCCCATAGAAGATGGT+AGG - chr5_2:42189542-42189561 Msa0770740:intron 40.0%
TGTCTGTTGATGCACAACTT+CGG - chr5_2:42189649-42189668 Msa0770740:intron 40.0%
! CATTTTCTCGAGTGTTTTCG+CGG - chr5_2:42189721-42189740 Msa0770740:intron 40.0%
! ATTTTCTCGAGTGTTTTCGC+GGG - chr5_2:42189722-42189741 Msa0770740:intron 40.0%
! TGGTGAACGTTGTTTCCAAA+AGG + chr5_2:42190052-42190071 None:intergenic 40.0%
TACCGAGAGTGGAAATTATG+TGG - chr5_2:42190111-42190130 Msa0770740:intron 40.0%
TGCCACATAATTTCCACTCT+CGG + chr5_2:42190116-42190135 None:intergenic 40.0%
! TTATGTGGCATGCTTTTGGA+TGG - chr5_2:42190126-42190145 Msa0770740:intron 40.0%
TGACACTTACACTACCTTCT+GGG + chr5_2:42190162-42190181 None:intergenic 40.0%
CTGGAATTTCAGCAAAGGAT+TGG - chr5_2:42190197-42190216 Msa0770740:intron 40.0%
!! AGGGTGTTGAACTTGAAATC+AGG - chr5_2:42190355-42190374 Msa0770740:intron 40.0%
TTTAAGAGGGGAAGAATCGA+GGG + chr5_2:42190627-42190646 None:intergenic 40.0%
ATTTAAGAGGGGAAGAATCG+AGG + chr5_2:42190628-42190647 None:intergenic 40.0%
GTATTTGACCATGTGATGCT+CGG - chr5_2:42190689-42190708 Msa0770740:intron 40.0%
GACCATTACTGAAATTCGGA+TGG + chr5_2:42190831-42190850 None:intergenic 40.0%
AGACCTGTTATACTTCCTCT+AGG - chr5_2:42190958-42190977 Msa0770740:intron 40.0%
TGGTTTAGTATCATGTCCCT+TGG - chr5_2:42191126-42191145 Msa0770740:intron 40.0%
AACTAAAACGCAGAGACCAA+GGG + chr5_2:42191145-42191164 None:intergenic 40.0%
AAACTAAAACGCAGAGACCA+AGG + chr5_2:42191146-42191165 None:intergenic 40.0%
GAGAATCTAGTTGAGGCAAA+AGG - chr5_2:42191275-42191294 Msa0770740:intron 40.0%
AGTTGAGGCAAAAGGAAACT+TGG - chr5_2:42191283-42191302 Msa0770740:intron 40.0%
TATAGAGCAGCTATGACAAC+TGG - chr5_2:42191500-42191519 Msa0770740:CDS 40.0%
GTGTAGCAGGAAGTTTCTTT+GGG + chr5_2:42191683-42191702 None:intergenic 40.0%
TGTGTAGCAGGAAGTTTCTT+TGG + chr5_2:42191684-42191703 None:intergenic 40.0%
GAAACTTCCTGCTACACATT+TGG - chr5_2:42191686-42191705 Msa0770740:five_prime_UTR 40.0%
AAGCATTCCAAATGTGTAGC+AGG + chr5_2:42191696-42191715 None:intergenic 40.0%
! TTGGAATGCTTTGATAGCAG+GGG - chr5_2:42191705-42191724 Msa0770740:five_prime_UTR 40.0%
!!! GTTTTGGTTTCTTGGGAGGT+AGG + chr5_2:42186578-42186597 None:intergenic 45.0%
TTTATGGGGGCAACAGAACA+GGG + chr5_2:42186600-42186619 None:intergenic 45.0%
! TTTTATGGGGGCAACAGAAC+AGG + chr5_2:42186601-42186620 None:intergenic 45.0%
TGGTTGACCATTCCAAGTTC+AGG - chr5_2:42186811-42186830 Msa0770740:three_prime_UTR 45.0%
ATACCTTTGCGGAGATAGTG+TGG + chr5_2:42186915-42186934 None:intergenic 45.0%
TGCATTCTTGTGATCGGGTT+TGG - chr5_2:42187018-42187037 Msa0770740:three_prime_UTR 45.0%
TAAGCTAGCCCAGTTGGTTA+AGG - chr5_2:42187074-42187093 Msa0770740:three_prime_UTR 45.0%
CATCCAACTCCTTAACCAAC+TGG + chr5_2:42187086-42187105 None:intergenic 45.0%
GGTTAAGGAGTTGGATGTAC+TGG - chr5_2:42187089-42187108 Msa0770740:three_prime_UTR 45.0%
! CCACATACATGATAGTGAGG+GGG + chr5_2:42187594-42187613 None:intergenic 45.0%
! GCCACATACATGATAGTGAG+GGG + chr5_2:42187595-42187614 None:intergenic 45.0%
! GAGCCACATACATGATAGTG+AGG + chr5_2:42187597-42187616 None:intergenic 45.0%
ATCTTCATCGTGCATCCTGT+GGG + chr5_2:42187675-42187694 None:intergenic 45.0%
AATCTTCATCGTGCATCCTG+TGG + chr5_2:42187676-42187695 None:intergenic 45.0%
AAAAAGGCCAAATACCTCCC+GGG - chr5_2:42187749-42187768 Msa0770740:intron 45.0%
AAAACTTAAAGGATCCCGGG+AGG + chr5_2:42187766-42187785 None:intergenic 45.0%
! GTGGTTGTTTAGTGGTGATG+TGG - chr5_2:42187899-42187918 Msa0770740:intron 45.0%
!! AAGGGCATTGGCGTGTTTAA+TGG + chr5_2:42187972-42187991 None:intergenic 45.0%
AACACGCCAATGCCCTTAAA+AGG - chr5_2:42187975-42187994 Msa0770740:CDS 45.0%
ACACGCCAATGCCCTTAAAA+GGG - chr5_2:42187976-42187995 Msa0770740:CDS 45.0%
CTGCTTATGTGGCTGTTTAG+TGG + chr5_2:42188714-42188733 None:intergenic 45.0%
!! TAAAGGACCCAGGAGGTATT+TGG - chr5_2:42188836-42188855 Msa0770740:intron 45.0%
ACGGACGTTCACAATTTGAG+GGG + chr5_2:42189095-42189114 None:intergenic 45.0%
GACGGACGTTCACAATTTGA+GGG + chr5_2:42189096-42189115 None:intergenic 45.0%
AGACGGACGTTCACAATTTG+AGG + chr5_2:42189097-42189116 None:intergenic 45.0%
CCACACCTACCATCTTCTAT+GGG + chr5_2:42189550-42189569 None:intergenic 45.0%
TCCACACCTACCATCTTCTA+TGG + chr5_2:42189551-42189570 None:intergenic 45.0%
GTCTGTTGATGCACAACTTC+GGG - chr5_2:42189650-42189669 Msa0770740:intron 45.0%
GCATTTACAACTACCGAGAG+TGG - chr5_2:42190100-42190119 Msa0770740:intron 45.0%
ATGGAAGGAAAACACCCAGA+AGG - chr5_2:42190145-42190164 Msa0770740:intron 45.0%
CTGACACTTACACTACCTTC+TGG + chr5_2:42190163-42190182 None:intergenic 45.0%
GTGTAAGTGTCAGCCTTGAT+TGG - chr5_2:42190170-42190189 Msa0770740:intron 45.0%
GTCAGCCTTGATTGGAAAAC+TGG - chr5_2:42190178-42190197 Msa0770740:intron 45.0%
CTTGAAATCAGGAAGCTCGA+AGG - chr5_2:42190366-42190385 Msa0770740:intron 45.0%
AAACAAATGCTCGAGTCGCT+TGG - chr5_2:42191106-42191125 Msa0770740:intron 45.0%
!!! GGTCTCTGCGTTTTAGTTTC+TGG - chr5_2:42191147-42191166 Msa0770740:intron 45.0%
! AAGAGCCACTCACATCGATT+AGG - chr5_2:42191334-42191353 Msa0770740:intron 45.0%
! AGAGCCACTCACATCGATTA+GGG - chr5_2:42191335-42191354 Msa0770740:intron 45.0%
!! ATATTAATATTAATCAAATT+CGG - chr5_2:42189859-42189878 Msa0770740:intron 5.0%
!!! CAGGGTTTTGGTTTCTTGGG+AGG + chr5_2:42186582-42186601 None:intergenic 50.0%
TCTCCACACTATCTCCGCAA+AGG - chr5_2:42186909-42186928 Msa0770740:three_prime_UTR 50.0%
AGCCCAGTTGGTTAAGGAGT+TGG - chr5_2:42187080-42187099 Msa0770740:three_prime_UTR 50.0%
GGATGTACTGGGTTCAAACC+CGG - chr5_2:42187101-42187120 Msa0770740:three_prime_UTR 50.0%
TTCAATCCGGTAGCGTTGTC+AGG - chr5_2:42187399-42187418 Msa0770740:intron 50.0%
TTTGCACCACTAGCCCAAAG+AGG + chr5_2:42187511-42187530 None:intergenic 50.0%
CCCCCTCACTATCATGTATG+TGG - chr5_2:42187591-42187610 Msa0770740:intron 50.0%
!! AAAGGATCCCGGGAGGTATT+TGG + chr5_2:42187759-42187778 None:intergenic 50.0%
CTAGGGGAGCTTATGAAGAG+TGG - chr5_2:42189369-42189388 Msa0770740:intron 50.0%
CCCATAGAAGATGGTAGGTG+TGG - chr5_2:42189547-42189566 Msa0770740:intron 50.0%
GTTGATGCACAACTTCGGGA+TGG - chr5_2:42189654-42189673 Msa0770740:intron 50.0%
! GTGGCATGCTTTTGGATGGA+AGG - chr5_2:42190130-42190149 Msa0770740:intron 50.0%
CAGGAAGCTCGAAGGAATAG+TGG - chr5_2:42190374-42190393 Msa0770740:intron 50.0%
! GGGAAGAATCGAGGGTTTTG+AGG + chr5_2:42190619-42190638 None:intergenic 50.0%
ATCTCGAACCGAGCATCACA+TGG + chr5_2:42190700-42190719 None:intergenic 50.0%
! TGTGATGCTCGGTTCGAGAT+TGG - chr5_2:42190700-42190719 Msa0770740:intron 50.0%
GCTTCCCTGTAGCAATGTCA+AGG + chr5_2:42191063-42191082 None:intergenic 50.0%
CTACAGGGAAGCAACGATGA+GGG - chr5_2:42191071-42191090 Msa0770740:intron 50.0%
TCGATGTGAGTGGCTCTTCT+TGG + chr5_2:42191332-42191351 None:intergenic 50.0%
! GAATGCTTTGATAGCAGGGG+AGG - chr5_2:42191708-42191727 Msa0770740:five_prime_UTR 50.0%
! GGGGCAACAGAACAGGGTTT+TGG + chr5_2:42186594-42186613 None:intergenic 55.0%
AAGGGTCCTGACAACGCTAC+CGG + chr5_2:42187408-42187427 None:intergenic 55.0%
GTTGTCAGGACCCTTCGTCA+CGG - chr5_2:42187413-42187432 Msa0770740:intron 55.0%
TTGTCAGGACCCTTCGTCAC+GGG - chr5_2:42187414-42187433 Msa0770740:intron 55.0%
! TTTGGGCCTCTTTGGGCTAG+TGG - chr5_2:42187502-42187521 Msa0770740:intron 55.0%
CATGTATGTGGCTCAGCCAC+TGG - chr5_2:42187603-42187622 Msa0770740:intron 55.0%
GCTACAGGGAAGCAACGATG+AGG - chr5_2:42191070-42191089 Msa0770740:intron 55.0%
GAGGATCCACGTTGCAGTGA+GGG - chr5_2:42191727-42191746 Msa0770740:five_prime_UTR 55.0%
GGCGCCCTAATCGATGTGAG+TGG + chr5_2:42191342-42191361 None:intergenic 60.0%
GGAGGATCCACGTTGCAGTG+AGG - chr5_2:42191726-42191745 Msa0770740:five_prime_UTR 60.0%
TGCACACCCTCACTGCAACG+TGG + chr5_2:42191736-42191755 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 42186546 42191825 42186546 ID=Msa0770740;Name=Msa0770740
chr5_2 mRNA 42186546 42191825 42186546 ID=Msa0770740-mRNA-1;Parent=Msa0770740;Name=Msa0770740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=178|1|1|1|1|1|4|604|212
chr5_2 exon 42186546 42187294 42186546 ID=Msa0770740-mRNA-1:exon:13175;Parent=Msa0770740-mRNA-1
chr5_2 exon 42187938 42188014 42187938 ID=Msa0770740-mRNA-1:exon:13174;Parent=Msa0770740-mRNA-1
chr5_2 exon 42188122 42188331 42188122 ID=Msa0770740-mRNA-1:exon:13173;Parent=Msa0770740-mRNA-1
chr5_2 exon 42191441 42191825 42191441 ID=Msa0770740-mRNA-1:exon:13172;Parent=Msa0770740-mRNA-1
chr5_2 five_prime_UTR 42191648 42191825 42191648 ID=Msa0770740-mRNA-1:five_prime_utr;Parent=Msa0770740-mRNA-1
chr5_2 CDS 42191441 42191647 42191441 ID=Msa0770740-mRNA-1:cds;Parent=Msa0770740-mRNA-1
chr5_2 CDS 42188122 42188331 42188122 ID=Msa0770740-mRNA-1:cds;Parent=Msa0770740-mRNA-1
chr5_2 CDS 42187938 42188014 42187938 ID=Msa0770740-mRNA-1:cds;Parent=Msa0770740-mRNA-1
chr5_2 CDS 42187150 42187294 42187150 ID=Msa0770740-mRNA-1:cds;Parent=Msa0770740-mRNA-1
chr5_2 three_prime_UTR 42186546 42187149 42186546 ID=Msa0770740-mRNA-1:three_prime_utr;Parent=Msa0770740-mRNA-1
Gene Sequence

>Msa0770740

ATGAAGTTAAGAGATGGAAGTGAAATCACTATGCTGCTAGTATTGTTATTGTGCTTAACAACTCTCTTTCTAAAAACTGAAGCTATATGGTTGACCATTCCAAGTTCAGGAACTAAATGTGTGTCTGAAGATATTCAAACACATGTCGTTGTTTTAGCAGATTACTATGTTGTAACTGATGAAGGTCTCCACACTATCTCCGCAAAGGTAACATCTCCTTTTGGAAACAACGTTCACCATAATGAAAATGTTACACAAGGACAGTTTGCATTTACAACTACCGAGAGTGGAAATTATGTGGCATGCTTTTGGATGGAAGGAAAACACCCAGAAGGTAGTGTAAGTGTCAGCCTTGATTGGAAAACTGGAATTTCAGCAAAGGATTGGGATTCTGTTGCAAAGAAAGAAAAGATTGAGGGTGTTGAACTTGAAATCAGGAAGCTCGAAGGAATAGTGGATGCCATCCACGATTATCTAATTTATTTGAAGGAAAAGGAAGCAACGATGAGGGAAGTGAGTGAGAAAACAAATGCTCGAGTCGCTTGGTTTAGTATCATGTCCCTTGGTCTCTGCGTTTTAGTTTCTGGATTGCAACTTTGGTATCTACAGCGCTACTTTCGAAAGAAGAAGCTCATATAG
Protein sequence

>Msa0770740

MKLRDGSEITMLLVLLLCLTTLFLKTEAIWLTIPSSGTKCVSEDIQTHVVVLADYYVVTDEGLHTISAKVTSPFGNNVHHNENVTQGQFAFTTTESGNYVACFWMEGKHPEGSVSVSLDWKTGISAKDWDSVAKKEKIEGVELEIRKLEGIVDAIHDYLIYLKEKEATMREVSEKTNARVAWFSIMSLGLCVLVSGLQLWYLQRYFRKKKLI*