AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162780 MtrunA17_Chr7g0258941 97.742 310 7 0 1 310 1 310 0.0 637
Msa1162780 MtrunA17_Chr1g0175721 80.000 310 61 1 1 310 1 309 0.0 528
Msa1162780 MtrunA17_Chr3g0126851 72.662 278 71 1 37 309 33 310 2.14e-155 437
Msa1162780 MtrunA17_Chr1g0147041 74.906 267 67 0 43 309 52 318 4.87e-155 437
Msa1162780 MtrunA17_Chr8g0346801 72.263 274 75 1 36 309 22 294 1.02e-153 432
Msa1162780 MtrunA17_Chr3g0083571 73.333 270 68 1 40 309 38 303 9.21e-153 430
Msa1162780 MtrunA17_Chr7g0275701 73.432 271 69 1 39 309 44 311 5.50e-151 426
Msa1162780 MtrunA17_Chr8g0352701 68.929 280 79 2 38 309 24 303 2.46e-148 419
Msa1162780 MtrunA17_Chr5g0433631 25.912 274 189 6 33 306 7 266 5.00e-22 94.7
Msa1162780 MtrunA17_Chr4g0051351 28.972 214 139 5 58 270 96 297 2.75e-21 92.4
Msa1162780 MtrunA17_Chr7g0223111 26.316 209 144 4 59 267 37 235 1.22e-18 85.1
Msa1162780 MtrunA17_Chr5g0428191 24.903 257 170 6 58 310 10 247 7.08e-18 82.4
Msa1162780 MtrunA17_Chr5g0424971 30.303 132 86 4 59 189 18 144 6.73e-17 79.7
Msa1162780 MtrunA17_Chr5g0433541 28.972 214 132 6 59 267 11 209 1.99e-16 77.4
Msa1162780 MtrunA17_Chr5g0433551 28.972 214 132 6 59 267 11 209 1.99e-16 77.4
Msa1162780 MtrunA17_Chr5g0433411 25.424 236 162 6 72 307 47 268 4.60e-16 77.8
Msa1162780 MtrunA17_Chr5g0433531 27.419 248 161 5 55 302 7 235 7.23e-16 77.0
Msa1162780 MtrunA17_Chr2g0298951 32.743 113 71 2 75 184 9 119 1.51e-14 72.8
Msa1162780 MtrunA17_Chr5g0433661 27.273 209 142 5 59 267 45 243 1.40e-13 70.5
Msa1162780 MtrunA17_Chr7g0259431 29.139 151 101 3 75 225 9 153 4.80e-13 68.6
Msa1162780 MtrunA17_Chr5g0433521 27.815 151 103 3 75 225 23 167 1.26e-12 67.4
Msa1162780 MtrunA17_Chr1g0169381 31.624 117 77 2 58 174 10 123 2.36e-12 63.9
Msa1162780 MtrunA17_Chr5g0433731 24.691 243 148 9 67 302 2 216 8.28e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162780 AT3G58040.1 78.065 310 66 2 1 310 1 308 0.0 510
Msa1162780 AT3G58040.3 78.065 310 66 2 1 310 1 308 0.0 510
Msa1162780 AT2G41980.1 76.129 310 69 1 1 310 1 305 2.36e-180 500
Msa1162780 AT3G61790.1 76.357 258 61 0 52 309 53 310 3.74e-155 437
Msa1162780 AT4G27880.1 72.348 264 73 0 46 309 48 311 5.17e-151 426
Msa1162780 AT5G53360.1 75.369 203 50 0 107 309 15 217 8.14e-119 341
Msa1162780 AT5G53360.3 75.369 203 50 0 107 309 15 217 8.14e-119 341
Msa1162780 AT3G58040.2 74.146 205 51 2 1 205 1 203 9.94e-109 315
Msa1162780 AT3G13672.1 50.495 202 94 2 111 309 13 211 1.20e-70 218
Msa1162780 AT3G13672.2 44.978 229 93 3 111 309 13 238 6.00e-65 204
Msa1162780 AT5G53360.2 74.286 105 27 0 205 309 60 164 2.34e-56 181
Msa1162780 AT5G37870.1 38.281 128 76 2 58 185 41 165 2.28e-23 97.4
Msa1162780 AT5G37930.1 37.692 130 78 2 58 187 109 235 8.34e-21 91.7
Msa1162780 AT5G37890.1 26.721 247 166 6 58 302 47 280 8.44e-20 87.8
Msa1162780 AT5G62800.1 26.953 256 157 8 58 302 39 275 1.15e-17 82.8
Msa1162780 AT5G37910.1 25.692 253 177 6 58 309 34 276 2.43e-17 80.9
Msa1162780 AT1G66620.1 30.968 155 102 2 23 174 2 154 2.88e-17 81.3
Msa1162780 AT5G62800.2 27.103 214 132 5 58 261 39 238 5.87e-17 80.5
Msa1162780 AT1G66630.1 36.885 122 73 2 58 177 45 164 1.73e-15 75.9
Msa1162780 AT1G66660.2 35.714 112 70 1 58 169 102 211 4.28e-15 75.5
Msa1162780 AT1G66650.1 32.593 135 86 3 58 189 82 214 5.93e-15 74.7
Msa1162780 AT1G66610.2 32.773 119 76 2 7 121 102 220 3.31e-13 68.6

Find 99 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCCTTCTTACGGTTTA+TGG 0.117780 7_4:+53571476 Msa1162780:CDS
TTATTGTATGAAGGATATTT+TGG 0.246908 7_4:+53571974 Msa1162780:three_prime_UTR
AAACTCAAAGCTAAAGAAAT+TGG 0.250381 7_4:+53569642 Msa1162780:five_prime_UTR
GTGTTTGTTGGTATCGATTA+TGG 0.251697 7_4:-53568228 None:intergenic
TGAGAATCACCGGTCGTATA+TGG 0.277771 7_4:+53571691 Msa1162780:CDS
TTCAATTCCACACATCTTAG+AGG 0.288192 7_4:+53571873 Msa1162780:three_prime_UTR
GGAGAAAGTGGCGGAATCTT+TGG 0.289986 7_4:+53570339 Msa1162780:CDS
AAGTGTTGGCCAGAGACTTT+TGG 0.299363 7_4:+53569397 Msa1162780:five_prime_UTR
GACAGGTGGGACAGAGATTA+TGG 0.312010 7_4:-53570282 None:intergenic
CATATGGGCGCAAACTTATA+TGG 0.315205 7_4:+53571547 Msa1162780:CDS
AGCTTAGAAGTCGGTGCATA+TGG 0.322324 7_4:+53571531 Msa1162780:CDS
ATGGCCTTCTTACGGTTTAT+GGG 0.324454 7_4:+53571477 Msa1162780:CDS
TTTCTTGACTCGCTGGATCT+TGG 0.328460 7_4:+53569339 Msa1162780:five_prime_UTR
CCCACCTGTCACCATGATCT+TGG 0.343411 7_4:+53570295 Msa1162780:CDS
GCATTTCTGTTTGCACTTTG+AGG 0.351473 7_4:+53571425 Msa1162780:CDS
TGTTTAAGCTTTGCATAGTA+AGG 0.352415 7_4:-53570406 None:intergenic
ACCATGATCTTGGGAATATA+AGG 0.354435 7_4:+53570305 Msa1162780:CDS
CACTTTGAGGCTTTCCAGCT+TGG 0.356658 7_4:+53571438 Msa1162780:CDS
TCCACTAGTGTTGGATTGAA+TGG 0.361198 7_4:+53569806 Msa1162780:CDS
GAATATAAGGTGTTTGGCTC+TGG 0.367722 7_4:+53570318 Msa1162780:CDS
TTGACTTCAGATTATGAAAC+AGG 0.369439 7_4:+53569740 Msa1162780:CDS
TGTAAGTGTACAGTTAATCT+TGG 0.383421 7_4:-53569780 None:intergenic
TCAAATTATTTATTGTATGA+AGG 0.396071 7_4:+53571965 Msa1162780:three_prime_UTR
GAACATAACGTATGGCCATT+TGG 0.409073 7_4:-53570241 None:intergenic
TATCCTAGGGAAACTCTATA+AGG 0.411434 7_4:+53569448 Msa1162780:five_prime_UTR
TCTTGGGAATATAAGGTGTT+TGG 0.412899 7_4:+53570312 Msa1162780:CDS
CCACCTGTCACCATGATCTT+GGG 0.439936 7_4:+53570296 Msa1162780:CDS
CATTGTATAGAGCTTATTAC+GGG 0.448456 7_4:+53571777 Msa1162780:three_prime_UTR
TCATTGTATAGAGCTTATTA+CGG 0.450666 7_4:+53571776 Msa1162780:three_prime_UTR
CCTTTAGATCGGATCAGAAA+TGG 0.457706 7_4:+53569673 Msa1162780:exon
CCATACAATTGTCCCTATGC+TGG 0.460910 7_4:+53570451 Msa1162780:CDS
TACTCGTGCTAGATTATCCT+AGG 0.462366 7_4:+53569434 Msa1162780:five_prime_UTR
CCATTTCTGATCCGATCTAA+AGG 0.471216 7_4:-53569673 None:intergenic
AAGCAGTGCACCTGGTGAAT+TGG 0.478324 7_4:-53569905 None:intergenic
CCTTGCAGATATCAGAGTCT+AGG 0.480797 7_4:+53570367 Msa1162780:CDS
CCAGCATAGGGACAATTGTA+TGG 0.489704 7_4:-53570451 None:intergenic
GGATCTGAGTGCTCCGTGAT+GGG 0.492368 7_4:+53570472 Msa1162780:CDS
ATCTTCTTTCCATATACGAC+CGG 0.495873 7_4:-53571700 None:intergenic
CATTCACGCCCAAAAGTCTC+TGG 0.496141 7_4:-53569406 None:intergenic
CTTAAACATGAGCAAAATTG+TGG 0.498784 7_4:+53570421 Msa1162780:CDS
CTTACAAAATCCACTAGTGT+TGG 0.503995 7_4:+53569797 Msa1162780:CDS
TGGATCTGAGTGCTCCGTGA+TGG 0.504556 7_4:+53570471 Msa1162780:CDS
TCAGAAATGGCTCCGGGAGG+AGG 0.504929 7_4:+53569686 Msa1162780:exon
TTATATGGCAAGGAATTCCT+AGG 0.506193 7_4:+53571562 Msa1162780:CDS
TACAATTTGAACATAACGTA+TGG 0.506717 7_4:-53570249 None:intergenic
AAAGTTAGAGATAGTCAAGA+TGG 0.510900 7_4:+53571606 Msa1162780:CDS
TGACTGTCGCGTATGCTCCT+AGG 0.511842 7_4:-53571579 None:intergenic
ATCTCTTGTTGATCATCTCA+AGG 0.513200 7_4:+53570504 Msa1162780:CDS
ATCGGATCAGAAATGGCTCC+GGG 0.513632 7_4:+53569680 Msa1162780:exon
CAGTGCACCTGGTGAATTGG+AGG 0.518998 7_4:-53569902 None:intergenic
ACCTTATATTCCCAAGATCA+TGG 0.520727 7_4:-53570306 None:intergenic
GATCGGATCAGAAATGGCTC+CGG 0.522089 7_4:+53569679 Msa1162780:exon
AAACAACAACGTTGTTGTGT+TGG 0.523776 7_4:+53568187 Msa1162780:five_prime_UTR
GTTTAAGCTTTGCATAGTAA+GGG 0.527406 7_4:-53570405 None:intergenic
AAACTGGAGCTGTACCAAGC+TGG 0.527478 7_4:-53571452 None:intergenic
TCCATTCAATCCAACACTAG+TGG 0.529508 7_4:-53569807 None:intergenic
TGGAAAGAAATCCTTTAGAT+CGG 0.531076 7_4:+53569662 Msa1162780:five_prime_UTR
TGTGTGTTTCAGTGTCCAAA+TGG 0.537348 7_4:+53570226 Msa1162780:intron
TTGAGATGATCAACAAGAGA+TGG 0.537565 7_4:-53570502 None:intergenic
ATTTCTTACATGTTAAGTGT+TGG 0.537594 7_4:+53569383 Msa1162780:five_prime_UTR
TCCACACATCTTAGAGGCGA+GGG 0.543154 7_4:+53571879 Msa1162780:three_prime_UTR
GTGTTTGGCTCTGGAGAAAG+TGG 0.543736 7_4:+53570327 Msa1162780:CDS
TTTGACATATCGATGATTGA+AGG 0.543895 7_4:-53570560 None:intergenic
AATGGTGTGCATGACTTACT+CGG 0.545764 7_4:+53569851 Msa1162780:CDS
CTTGCAGATATCAGAGTCTA+GGG 0.551230 7_4:+53570368 Msa1162780:CDS
CACGGAACTAGTTCAAAGAA+TGG 0.551902 7_4:+53569833 Msa1162780:CDS
ATTCCCAAGATCATGGTGAC+AGG 0.559471 7_4:-53570299 None:intergenic
CCCAAGATCATGGTGACAGG+TGG 0.563063 7_4:-53570296 None:intergenic
ATCGCCCATAAACCGTAAGA+AGG 0.570793 7_4:-53571481 None:intergenic
CACAAGGTTGACATGCATGA+TGG 0.576711 7_4:+53570532 Msa1162780:CDS
TTCAGTTACAGCTTAGAAGT+CGG 0.578117 7_4:+53571522 Msa1162780:CDS
TCTTTGAAAATACCTCCTCC+CGG 0.578930 7_4:-53569698 None:intergenic
TAAAAGTGAAAGAAAGCTGA+AGG 0.579210 7_4:-53571917 None:intergenic
AAAACGAAGTCACAATTCAA+AGG 0.583618 7_4:+53572019 Msa1162780:three_prime_UTR
GAGTTGAAATTGAGAATCAC+CGG 0.584234 7_4:+53571681 Msa1162780:CDS
TTCCACACATCTTAGAGGCG+AGG 0.584877 7_4:+53571878 Msa1162780:three_prime_UTR
TGGTTGGATTGATGGTTCCA+AGG 0.587540 7_4:+53568658 Msa1162780:five_prime_UTR
TTTCATAATCTGAAGTCAAG+AGG 0.592761 7_4:-53569736 None:intergenic
ATACCTTATAGAGTTTCCCT+AGG 0.597802 7_4:-53569451 None:intergenic
GCTTAGAAGTCGGTGCATAT+GGG 0.598441 7_4:+53571532 Msa1162780:CDS
GAGCACTCAGATCCAGCATA+GGG 0.606589 7_4:-53570463 None:intergenic
GATGTATCCTCCAATTCACC+AGG 0.614890 7_4:+53569895 Msa1162780:CDS
GGGCGCAAACTTATATGGCA+AGG 0.619069 7_4:+53571552 Msa1162780:CDS
GGAGCACTCAGATCCAGCAT+AGG 0.620419 7_4:-53570464 None:intergenic
CCAAGATCATGGTGACAGGT+GGG 0.628103 7_4:-53570295 None:intergenic
AGATGGAATGTCGCCCATCA+CGG 0.630084 7_4:-53570485 None:intergenic
TAATAATGTATTAAGCGTGA+AGG 0.632431 7_4:+53571741 Msa1162780:three_prime_UTR
ACCCTCGCCTCTAAGATGTG+TGG 0.638155 7_4:-53571880 None:intergenic
AAGATGGACTAATAATTCAG+AGG 0.639261 7_4:+53571622 Msa1162780:CDS
TTCAGATTATGAAACAGGCA+AGG 0.651216 7_4:+53569745 Msa1162780:CDS
GTTGGATTGAATGGAAAGCA+CGG 0.653878 7_4:+53569815 Msa1162780:CDS
ATGGTGTGCATGACTTACTC+GGG 0.659438 7_4:+53569852 Msa1162780:CDS
CCTAGACTCTGATATCTGCA+AGG 0.660946 7_4:-53570367 None:intergenic
TCATCTCAAGGATGAACACA+AGG 0.664179 7_4:+53570516 Msa1162780:CDS
ACTCGTGCTAGATTATCCTA+GGG 0.666126 7_4:+53569435 Msa1162780:five_prime_UTR
TTTGGCTCTGGAGAAAGTGG+CGG 0.674324 7_4:+53570330 Msa1162780:CDS
ATGAAGTTGAAAATGCCACA+TGG 0.708825 7_4:+53570593 Msa1162780:CDS
ACTTACAGTGAGCATCCATG+TGG 0.726222 7_4:-53570608 None:intergenic
GGATCAGAAATGGCTCCGGG+AGG 0.729551 7_4:+53569683 Msa1162780:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGAAACAAATAAAAATT+CGG - chr7_4:53568731-53568750 None:intergenic 10.0%
!!! TTTATTTGTTTCTATAATTT+TGG + chr7_4:53568735-53568754 Msa1162780:intron 10.0%
!! ATAAAAACATAATGCAAAAA+TGG - chr7_4:53568310-53568329 None:intergenic 15.0%
!! GCAAAATTAAATTATATTTG+TGG + chr7_4:53569152-53569171 Msa1162780:intron 15.0%
!!! ATGTAAGAAATAACTATTTT+TGG - chr7_4:53569374-53569393 None:intergenic 15.0%
!!! ATTAAAAAGTATTGTAATCT+TGG - chr7_4:53570797-53570816 None:intergenic 15.0%
!! TACTTCAAATATTTATTAGT+TGG - chr7_4:53571322-53571341 None:intergenic 15.0%
!! TCAAATTATTTATTGTATGA+AGG + chr7_4:53571965-53571984 Msa1162780:three_prime_UTR 15.0%
!!! ATTTGATATTTTGTTTGACA+TGG + chr7_4:53568413-53568432 Msa1162780:intron 20.0%
!!! TTTTTGTTTTTTCCTTTGAT+TGG + chr7_4:53568453-53568472 Msa1162780:intron 20.0%
!! TCAAATTGTGATTCTATTTA+TGG + chr7_4:53568537-53568556 Msa1162780:intron 20.0%
!!! ATAATTTTGGTTCTGTTTTA+TGG + chr7_4:53568748-53568767 Msa1162780:intron 20.0%
!! ATTTAAATGTAGAAGAGATA+TGG + chr7_4:53568774-53568793 Msa1162780:intron 20.0%
!!! GATAAAAACCTTTAGTTTAT+AGG + chr7_4:53570126-53570145 Msa1162780:intron 20.0%
!!! GAAATATTGGTAACTATTAT+TGG - chr7_4:53570192-53570211 None:intergenic 20.0%
!!! ATTTAATTTTACGTTCACAA+TGG + chr7_4:53570746-53570765 Msa1162780:intron 20.0%
!!! TAATAAAAACTTGCTTCTAT+TGG + chr7_4:53570813-53570832 Msa1162780:intron 20.0%
!!! TTATTGTATGAAGGATATTT+TGG + chr7_4:53571974-53571993 Msa1162780:three_prime_UTR 20.0%
!! AAAAAAAAGTGTGTGTTTGT+TGG - chr7_4:53568243-53568262 None:intergenic 25.0%
!!! AAACACACACTTTTTTTTTC+TGG + chr7_4:53568245-53568264 Msa1162780:five_prime_UTR 25.0%
! TAATGCAAAAATGGAACATT+TGG - chr7_4:53568301-53568320 None:intergenic 25.0%
!!! GTTTTGTTCAAGTTTTTGTT+TGG + chr7_4:53568638-53568657 Msa1162780:intron 25.0%
! ATTTCTTACATGTTAAGTGT+TGG + chr7_4:53569383-53569402 Msa1162780:five_prime_UTR 25.0%
!!! TAGCTTTGAGTTTATTTTTG+TGG - chr7_4:53569635-53569654 None:intergenic 25.0%
! AAACTCAAAGCTAAAGAAAT+TGG + chr7_4:53569642-53569661 Msa1162780:five_prime_UTR 25.0%
! TTTATCTGTTTATTATCGCT+TGG - chr7_4:53570112-53570131 None:intergenic 25.0%
! GTGAAATACCTATAAACTAA+AGG - chr7_4:53570137-53570156 None:intergenic 25.0%
! TGCATACAAAACAGAAATAT+TGG - chr7_4:53570205-53570224 None:intergenic 25.0%
! TACAATTTGAACATAACGTA+TGG - chr7_4:53570252-53570271 None:intergenic 25.0%
! TCTATTGAACAAAACAAGTA+TGG - chr7_4:53570772-53570791 None:intergenic 25.0%
!!! ATACTTGTTTTGTTCAATAG+AGG + chr7_4:53570771-53570790 Msa1162780:intron 25.0%
! TCTATATTCAATACTTAGTG+AGG - chr7_4:53570946-53570965 None:intergenic 25.0%
! ATAAAACCATGCAACTAAAT+TGG - chr7_4:53571036-53571055 None:intergenic 25.0%
! TAGACTAGAAGTTAAAAATG+AGG - chr7_4:53571158-53571177 None:intergenic 25.0%
! TTACAAATGTAACAAATCAG+AGG + chr7_4:53571182-53571201 Msa1162780:intron 25.0%
! TACAAATGTAACAAATCAGA+GGG + chr7_4:53571183-53571202 Msa1162780:intron 25.0%
!! AAAGAATTTGAAATGCAAGA+GGG - chr7_4:53571376-53571395 None:intergenic 25.0%
! TAATAATGTATTAAGCGTGA+AGG + chr7_4:53571741-53571760 Msa1162780:three_prime_UTR 25.0%
! TCATTGTATAGAGCTTATTA+CGG + chr7_4:53571776-53571795 Msa1162780:three_prime_UTR 25.0%
!!! TTTATTGTTTTTGACACGCA+TGG + chr7_4:53568348-53568367 Msa1162780:intron 30.0%
GCATGGATATAAATAAGACT+TGG + chr7_4:53568365-53568384 Msa1162780:intron 30.0%
TAAGACTTGGAATTCTCAAT+TGG + chr7_4:53568378-53568397 Msa1162780:intron 30.0%
AAGACTTGGAATTCTCAATT+GGG + chr7_4:53568379-53568398 Msa1162780:intron 30.0%
!!! GTTTTTTCCTTTGATTGGTA+TGG + chr7_4:53568458-53568477 Msa1162780:intron 30.0%
!!! GGTATGGTTTTGGATTTTTT+TGG + chr7_4:53568474-53568493 Msa1162780:intron 30.0%
!!! TTCACTTGCTGACTTTTTAT+TGG + chr7_4:53568510-53568529 Msa1162780:intron 30.0%
!! TGTTCAAGTTTTTGTTTGGT+TGG + chr7_4:53568642-53568661 Msa1162780:intron 30.0%
!! TTTTTGTTTGGTTGGATTGA+TGG + chr7_4:53568650-53568669 Msa1162780:five_prime_UTR 30.0%
ATACTTCTATTGCAACACTA+TGG - chr7_4:53568888-53568907 None:intergenic 30.0%
! AGTGTTGCAATAGAAGTATA+AGG + chr7_4:53568889-53568908 Msa1162780:intron 30.0%
CATTCCAACTTCTATACTAT+TGG - chr7_4:53569028-53569047 None:intergenic 30.0%
ACAACTGTTAAGTAGCAAAA+TGG - chr7_4:53569606-53569625 None:intergenic 30.0%
TGGAAAGAAATCCTTTAGAT+CGG + chr7_4:53569662-53569681 Msa1162780:five_prime_UTR 30.0%
! TTTCATAATCTGAAGTCAAG+AGG - chr7_4:53569739-53569758 None:intergenic 30.0%
TTGACTTCAGATTATGAAAC+AGG + chr7_4:53569740-53569759 Msa1162780:CDS 30.0%
TGTAAGTGTACAGTTAATCT+TGG - chr7_4:53569783-53569802 None:intergenic 30.0%
GTTTAAGCTTTGCATAGTAA+GGG - chr7_4:53570408-53570427 None:intergenic 30.0%
TGTTTAAGCTTTGCATAGTA+AGG - chr7_4:53570409-53570428 None:intergenic 30.0%
CTTAAACATGAGCAAAATTG+TGG + chr7_4:53570421-53570440 Msa1162780:CDS 30.0%
TTTGACATATCGATGATTGA+AGG - chr7_4:53570563-53570582 None:intergenic 30.0%
TGCAGTTGCAGATAATAAAA+AGG - chr7_4:53570878-53570897 None:intergenic 30.0%
! ATTTCCTTAGTCTAAAGCTA+TGG + chr7_4:53571092-53571111 Msa1162780:intron 30.0%
!! TATACCATAGCTTTAGACTA+AGG - chr7_4:53571099-53571118 None:intergenic 30.0%
! AGTCTAAAGCTATGGTATAT+AGG + chr7_4:53571100-53571119 Msa1162780:intron 30.0%
!! ATACATAAGTCGCTATTTCT+AGG + chr7_4:53571276-53571295 Msa1162780:intron 30.0%
!! TACATAAGTCGCTATTTCTA+GGG + chr7_4:53571277-53571296 Msa1162780:intron 30.0%
! AAGAATTTGAAATGCAAGAG+GGG - chr7_4:53571375-53571394 None:intergenic 30.0%
! CAAAGAATTTGAAATGCAAG+AGG - chr7_4:53571377-53571396 None:intergenic 30.0%
CTCTTGCATTTCAAATTCTT+TGG + chr7_4:53571375-53571394 Msa1162780:intron 30.0%
!! TTTCAAATTCTTTGGCTTTC+AGG + chr7_4:53571383-53571402 Msa1162780:intron 30.0%
!!! TTTCAGGTTTTCAATTGCTA+TGG + chr7_4:53571399-53571418 Msa1162780:intron 30.0%
AAAGTTAGAGATAGTCAAGA+TGG + chr7_4:53571606-53571625 Msa1162780:CDS 30.0%
!! AAGATGGACTAATAATTCAG+AGG + chr7_4:53571622-53571641 Msa1162780:CDS 30.0%
!!! GAATCAAGCCCTTTATTTTT+CGG + chr7_4:53571644-53571663 Msa1162780:CDS 30.0%
!!! AATCAAGCCCTTTATTTTTC+GGG + chr7_4:53571645-53571664 Msa1162780:CDS 30.0%
CATTGTATAGAGCTTATTAC+GGG + chr7_4:53571777-53571796 Msa1162780:three_prime_UTR 30.0%
TAAAAGTGAAAGAAAGCTGA+AGG - chr7_4:53571920-53571939 None:intergenic 30.0%
!! GACTTCGTTTTTACATATAC+TGG - chr7_4:53572010-53572029 None:intergenic 30.0%
AAACAACAACGTTGTTGTGT+TGG + chr7_4:53568187-53568206 Msa1162780:five_prime_UTR 35.0%
!! GTGTTTGTTGGTATCGATTA+TGG - chr7_4:53568231-53568250 None:intergenic 35.0%
GACATGGTGTTTATATGTTG+TGG + chr7_4:53568429-53568448 Msa1162780:intron 35.0%
! TCCTTTGATTGGTATGGTTT+TGG + chr7_4:53568464-53568483 Msa1162780:intron 35.0%
TCCAAAACCATACCAATCAA+AGG - chr7_4:53568468-53568487 None:intergenic 35.0%
! ATTCTATTTATGGCTTGCCT+TGG + chr7_4:53568547-53568566 Msa1162780:intron 35.0%
TCATGACAAACAAGTATCCA+AGG - chr7_4:53568567-53568586 None:intergenic 35.0%
! CTATCTACACTTTTGATGCT+TGG + chr7_4:53568697-53568716 Msa1162780:intron 35.0%
TCTGTGTCTTGTGAAATTGA+AGG + chr7_4:53568818-53568837 Msa1162780:intron 35.0%
! AAGTATAAGGCACTAAGATC+TGG + chr7_4:53568902-53568921 Msa1162780:intron 35.0%
! AGTATAAGGCACTAAGATCT+GGG + chr7_4:53568903-53568922 Msa1162780:intron 35.0%
! TTGCAAAGTACTTCAACTTG+AGG - chr7_4:53568989-53569008 None:intergenic 35.0%
CTTGCCAATAGTATAGAAGT+TGG + chr7_4:53569021-53569040 Msa1162780:intron 35.0%
AGTTGGAATGCTGTATTGTT+TGG + chr7_4:53569038-53569057 Msa1162780:intron 35.0%
TACATATCTCAGAAGACAAG+TGG - chr7_4:53569079-53569098 None:intergenic 35.0%
GAGATATGTAGTGATTAGTG+AGG + chr7_4:53569089-53569108 Msa1162780:intron 35.0%
TGATGTTGTTGTCATGTTTC+AGG + chr7_4:53569306-53569325 Msa1162780:intron 35.0%
TATCCTAGGGAAACTCTATA+AGG + chr7_4:53569448-53569467 Msa1162780:five_prime_UTR 35.0%
ATACCTTATAGAGTTTCCCT+AGG - chr7_4:53569454-53569473 None:intergenic 35.0%
TTCAGATTATGAAACAGGCA+AGG + chr7_4:53569745-53569764 Msa1162780:CDS 35.0%
CTTACAAAATCCACTAGTGT+TGG + chr7_4:53569797-53569816 Msa1162780:CDS 35.0%
TCAAGCGTCTATTCATGTTT+CGG + chr7_4:53569946-53569965 Msa1162780:intron 35.0%
GCAATAGCGCATTTGAAAAA+AGG - chr7_4:53569977-53569996 None:intergenic 35.0%
ACCATGATCTTGGGAATATA+AGG + chr7_4:53570305-53570324 Msa1162780:CDS 35.0%
ACCTTATATTCCCAAGATCA+TGG - chr7_4:53570309-53570328 None:intergenic 35.0%
! TCTTGGGAATATAAGGTGTT+TGG + chr7_4:53570312-53570331 Msa1162780:CDS 35.0%
TTGAGATGATCAACAAGAGA+TGG - chr7_4:53570505-53570524 None:intergenic 35.0%
ATCTCTTGTTGATCATCTCA+AGG + chr7_4:53570504-53570523 Msa1162780:CDS 35.0%
! TGGCATTTTCAACTTCATGT+GGG - chr7_4:53570591-53570610 None:intergenic 35.0%
ATGAAGTTGAAAATGCCACA+TGG + chr7_4:53570593-53570612 Msa1162780:CDS 35.0%
AATGTTAAACAGTACTGCAG+GGG - chr7_4:53570853-53570872 None:intergenic 35.0%
GAATGTTAAACAGTACTGCA+GGG - chr7_4:53570854-53570873 None:intergenic 35.0%
AGAATGTTAAACAGTACTGC+AGG - chr7_4:53570855-53570874 None:intergenic 35.0%
TTATTATCTGCAACTGCAAG+TGG + chr7_4:53570880-53570899 Msa1162780:intron 35.0%
AGATCACATGACATACACTT+AGG + chr7_4:53570963-53570982 Msa1162780:intron 35.0%
ACTCATCCAATTTAGTTGCA+TGG + chr7_4:53571027-53571046 Msa1162780:intron 35.0%
ATGGTATATAGGTTCTGCTT+TGG + chr7_4:53571111-53571130 Msa1162780:intron 35.0%
AAATGTAACAAATCAGAGGG+AGG + chr7_4:53571186-53571205 Msa1162780:intron 35.0%
! CAGTTTTTATGGCCTTCTTA+CGG + chr7_4:53571469-53571488 Msa1162780:CDS 35.0%
TTCAGTTACAGCTTAGAAGT+CGG + chr7_4:53571522-53571541 Msa1162780:CDS 35.0%
TTATATGGCAAGGAATTCCT+AGG + chr7_4:53571562-53571581 Msa1162780:CDS 35.0%
GAGTTGAAATTGAGAATCAC+CGG + chr7_4:53571681-53571700 Msa1162780:CDS 35.0%
ATCTTCTTTCCATATACGAC+CGG - chr7_4:53571703-53571722 None:intergenic 35.0%
! TGTTGTAAGATTTTGCTCTC+TGG + chr7_4:53571801-53571820 Msa1162780:three_prime_UTR 35.0%
TTCAATTCCACACATCTTAG+AGG + chr7_4:53571873-53571892 Msa1162780:three_prime_UTR 35.0%
AAAAAGAGCTCCTGAAGTTG+CGG - chr7_4:53568277-53568296 None:intergenic 40.0%
!! GCTTTGAAAGAACACTACCT+TGG - chr7_4:53568678-53568697 None:intergenic 40.0%
GTAGTGATTAGTGAGGCATA+TGG + chr7_4:53569096-53569115 Msa1162780:intron 40.0%
GATTAGTGAGGCATATGGAT+TGG + chr7_4:53569101-53569120 Msa1162780:intron 40.0%
!! GAGGCATATGGATTGGAATT+TGG + chr7_4:53569108-53569127 Msa1162780:intron 40.0%
!!! AGCGATGTTTTGAGTTTGAG+AGG + chr7_4:53569243-53569262 Msa1162780:intron 40.0%
!!! GCTTTTTTTTCTTGACTCGC+TGG + chr7_4:53569332-53569351 Msa1162780:five_prime_UTR 40.0%
TACTCGTGCTAGATTATCCT+AGG + chr7_4:53569434-53569453 Msa1162780:five_prime_UTR 40.0%
ACTCGTGCTAGATTATCCTA+GGG + chr7_4:53569435-53569454 Msa1162780:five_prime_UTR 40.0%
CCATTTCTGATCCGATCTAA+AGG - chr7_4:53569676-53569695 None:intergenic 40.0%
CCTTTAGATCGGATCAGAAA+TGG + chr7_4:53569673-53569692 Msa1162780:exon 40.0%
! TCTTTGAAAATACCTCCTCC+CGG - chr7_4:53569701-53569720 None:intergenic 40.0%
! TCCACTAGTGTTGGATTGAA+TGG + chr7_4:53569806-53569825 Msa1162780:CDS 40.0%
TCCATTCAATCCAACACTAG+TGG - chr7_4:53569810-53569829 None:intergenic 40.0%
GTTGGATTGAATGGAAAGCA+CGG + chr7_4:53569815-53569834 Msa1162780:CDS 40.0%
CACGGAACTAGTTCAAAGAA+TGG + chr7_4:53569833-53569852 Msa1162780:CDS 40.0%
AATGGTGTGCATGACTTACT+CGG + chr7_4:53569851-53569870 Msa1162780:CDS 40.0%
CAAGCGTCTATTCATGTTTC+GGG + chr7_4:53569947-53569966 Msa1162780:intron 40.0%
TGTGTGTTTCAGTGTCCAAA+TGG + chr7_4:53570226-53570245 Msa1162780:intron 40.0%
GAACATAACGTATGGCCATT+TGG - chr7_4:53570244-53570263 None:intergenic 40.0%
! GAATATAAGGTGTTTGGCTC+TGG + chr7_4:53570318-53570337 Msa1162780:CDS 40.0%
CTTGCAGATATCAGAGTCTA+GGG + chr7_4:53570368-53570387 Msa1162780:CDS 40.0%
TCATCTCAAGGATGAACACA+AGG + chr7_4:53570516-53570535 Msa1162780:CDS 40.0%
! GTGGCATTTTCAACTTCATG+TGG - chr7_4:53570592-53570611 None:intergenic 40.0%
AGACAGTCAGATCAACAAAC+AGG - chr7_4:53570644-53570663 None:intergenic 40.0%
GCAAAGTAGCTACAACTTGA+TGG + chr7_4:53571213-53571232 Msa1162780:intron 40.0%
TTGAAGACGAGAAATCGCAT+TGG + chr7_4:53571237-53571256 Msa1162780:intron 40.0%
GCATTTCTGTTTGCACTTTG+AGG + chr7_4:53571425-53571444 Msa1162780:CDS 40.0%
! TGGTACAGCTCCAGTTTTTA+TGG + chr7_4:53571458-53571477 Msa1162780:CDS 40.0%
CGTAAGAAGGCCATAAAAAC+TGG - chr7_4:53571471-53571490 None:intergenic 40.0%
TATGGCCTTCTTACGGTTTA+TGG + chr7_4:53571476-53571495 Msa1162780:CDS 40.0%
ATGGCCTTCTTACGGTTTAT+GGG + chr7_4:53571477-53571496 Msa1162780:CDS 40.0%
CATATGGGCGCAAACTTATA+TGG + chr7_4:53571547-53571566 Msa1162780:CDS 40.0%
!!! AAGCCCTTTATTTTTCGGGT+GGG + chr7_4:53571649-53571668 Msa1162780:CDS 40.0%
ATCCCCACCCGAAAAATAAA+GGG - chr7_4:53571655-53571674 None:intergenic 40.0%
TATCCCCACCCGAAAAATAA+AGG - chr7_4:53571656-53571675 None:intergenic 40.0%
CTGGTAATTTCCGCAACTTC+AGG + chr7_4:53568264-53568283 Msa1162780:intron 45.0%
! TGGTTGGATTGATGGTTCCA+AGG + chr7_4:53568658-53568677 Msa1162780:five_prime_UTR 45.0%
! TTTCTTGACTCGCTGGATCT+TGG + chr7_4:53569339-53569358 Msa1162780:five_prime_UTR 45.0%
!!! AAGTGTTGGCCAGAGACTTT+TGG + chr7_4:53569397-53569416 Msa1162780:five_prime_UTR 45.0%
!!! AGTGTTGGCCAGAGACTTTT+GGG + chr7_4:53569398-53569417 Msa1162780:five_prime_UTR 45.0%
ATGGTGTGCATGACTTACTC+GGG + chr7_4:53569852-53569871 Msa1162780:CDS 45.0%
GATGTATCCTCCAATTCACC+AGG + chr7_4:53569895-53569914 Msa1162780:CDS 45.0%
ATTCCCAAGATCATGGTGAC+AGG - chr7_4:53570302-53570321 None:intergenic 45.0%
CCTAGACTCTGATATCTGCA+AGG - chr7_4:53570370-53570389 None:intergenic 45.0%
CCTTGCAGATATCAGAGTCT+AGG + chr7_4:53570367-53570386 Msa1162780:CDS 45.0%
CCAGCATAGGGACAATTGTA+TGG - chr7_4:53570454-53570473 None:intergenic 45.0%
CCATACAATTGTCCCTATGC+TGG + chr7_4:53570451-53570470 Msa1162780:CDS 45.0%
CACAAGGTTGACATGCATGA+TGG + chr7_4:53570532-53570551 Msa1162780:CDS 45.0%
ACTTACAGTGAGCATCCATG+TGG - chr7_4:53570611-53570630 None:intergenic 45.0%
GCTCACTGTAAGTGACTCAA+TGG + chr7_4:53570618-53570637 Msa1162780:intron 45.0%
ATCGCCCATAAACCGTAAGA+AGG - chr7_4:53571484-53571503 None:intergenic 45.0%
AGCTTAGAAGTCGGTGCATA+TGG + chr7_4:53571531-53571550 Msa1162780:CDS 45.0%
GCTTAGAAGTCGGTGCATAT+GGG + chr7_4:53571532-53571551 Msa1162780:CDS 45.0%
!!! CAAGCCCTTTATTTTTCGGG+TGG + chr7_4:53571648-53571667 Msa1162780:CDS 45.0%
!!! AGCCCTTTATTTTTCGGGTG+GGG + chr7_4:53571650-53571669 Msa1162780:CDS 45.0%
!!! TTTTTCGGGTGGGGATAAAC+AGG + chr7_4:53571659-53571678 Msa1162780:CDS 45.0%
TGAGAATCACCGGTCGTATA+TGG + chr7_4:53571691-53571710 Msa1162780:CDS 45.0%
CATTCACGCCCAAAAGTCTC+TGG - chr7_4:53569409-53569428 None:intergenic 50.0%
TCAAATGCACACGCAATGCG+AGG - chr7_4:53569508-53569527 None:intergenic 50.0%
GATCGGATCAGAAATGGCTC+CGG + chr7_4:53569679-53569698 Msa1162780:exon 50.0%
ATCGGATCAGAAATGGCTCC+GGG + chr7_4:53569680-53569699 Msa1162780:exon 50.0%
AAGCAGTGCACCTGGTGAAT+TGG - chr7_4:53569908-53569927 None:intergenic 50.0%
GAAATTGCAAGCAGTGCACC+TGG - chr7_4:53569916-53569935 None:intergenic 50.0%
GACAGGTGGGACAGAGATTA+TGG - chr7_4:53570285-53570304 None:intergenic 50.0%
CCAAGATCATGGTGACAGGT+GGG - chr7_4:53570298-53570317 None:intergenic 50.0%
CCACCTGTCACCATGATCTT+GGG + chr7_4:53570296-53570315 Msa1162780:CDS 50.0%
!! GTGTTTGGCTCTGGAGAAAG+TGG + chr7_4:53570327-53570346 Msa1162780:CDS 50.0%
!! TTTGGCTCTGGAGAAAGTGG+CGG + chr7_4:53570330-53570349 Msa1162780:CDS 50.0%
! GGAGAAAGTGGCGGAATCTT+TGG + chr7_4:53570339-53570358 Msa1162780:CDS 50.0%
GAGCACTCAGATCCAGCATA+GGG - chr7_4:53570466-53570485 None:intergenic 50.0%
AGATGGAATGTCGCCCATCA+CGG - chr7_4:53570488-53570507 None:intergenic 50.0%
! AAACAGTACTGCAGGGGCAT+TGG - chr7_4:53570847-53570866 None:intergenic 50.0%
TCTGCAACTGCAAGTGGTGT+TGG + chr7_4:53570886-53570905 Msa1162780:intron 50.0%
!! CACTTTGAGGCTTTCCAGCT+TGG + chr7_4:53571438-53571457 Msa1162780:CDS 50.0%
AAACTGGAGCTGTACCAAGC+TGG - chr7_4:53571455-53571474 None:intergenic 50.0%
GGGCGCAAACTTATATGGCA+AGG + chr7_4:53571552-53571571 Msa1162780:CDS 50.0%
TTCCACACATCTTAGAGGCG+AGG + chr7_4:53571878-53571897 Msa1162780:three_prime_UTR 50.0%
TCCACACATCTTAGAGGCGA+GGG + chr7_4:53571879-53571898 Msa1162780:three_prime_UTR 50.0%
CAGTGCACCTGGTGAATTGG+AGG - chr7_4:53569905-53569924 None:intergenic 55.0%
CCCACCTGTCACCATGATCT+TGG + chr7_4:53570295-53570314 Msa1162780:CDS 55.0%
CCCAAGATCATGGTGACAGG+TGG - chr7_4:53570299-53570318 None:intergenic 55.0%
! GGAGCACTCAGATCCAGCAT+AGG - chr7_4:53570467-53570486 None:intergenic 55.0%
TGGATCTGAGTGCTCCGTGA+TGG + chr7_4:53570471-53570490 Msa1162780:CDS 55.0%
GGATCTGAGTGCTCCGTGAT+GGG + chr7_4:53570472-53570491 Msa1162780:CDS 55.0%
TGACTGTCGCGTATGCTCCT+AGG - chr7_4:53571582-53571601 None:intergenic 55.0%
!! ACCCTCGCCTCTAAGATGTG+TGG - chr7_4:53571883-53571902 None:intergenic 55.0%
GGATCAGAAATGGCTCCGGG+AGG + chr7_4:53569683-53569702 Msa1162780:exon 60.0%
TCAGAAATGGCTCCGGGAGG+AGG + chr7_4:53569686-53569705 Msa1162780:exon 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 53568071 53572038 53568071 ID=Msa1162780;Name=Msa1162780
chr7_4 mRNA 53568071 53572038 53568071 ID=Msa1162780-mRNA-1;Parent=Msa1162780;Name=Msa1162780-mRNA-1;_AED=0.07;_eAED=0.07;_QI=438|1|1|1|0.4|0.33|6|313|310
chr7_4 exon 53568071 53568266 53568071 ID=Msa1162780-mRNA-1:exon:15490;Parent=Msa1162780-mRNA-1
chr7_4 exon 53568650 53568679 53568650 ID=Msa1162780-mRNA-1:exon:15491;Parent=Msa1162780-mRNA-1
chr7_4 exon 53569328 53569469 53569328 ID=Msa1162780-mRNA-1:exon:15492;Parent=Msa1162780-mRNA-1
chr7_4 exon 53569622 53569916 53569622 ID=Msa1162780-mRNA-1:exon:15493;Parent=Msa1162780-mRNA-1
chr7_4 exon 53570238 53570624 53570238 ID=Msa1162780-mRNA-1:exon:15494;Parent=Msa1162780-mRNA-1
chr7_4 exon 53571405 53572038 53571405 ID=Msa1162780-mRNA-1:exon:15495;Parent=Msa1162780-mRNA-1
chr7_4 five_prime_UTR 53568071 53568266 53568071 ID=Msa1162780-mRNA-1:five_prime_utr;Parent=Msa1162780-mRNA-1
chr7_4 five_prime_UTR 53568650 53568679 53568650 ID=Msa1162780-mRNA-1:five_prime_utr;Parent=Msa1162780-mRNA-1
chr7_4 five_prime_UTR 53569328 53569469 53569328 ID=Msa1162780-mRNA-1:five_prime_utr;Parent=Msa1162780-mRNA-1
chr7_4 five_prime_UTR 53569622 53569691 53569622 ID=Msa1162780-mRNA-1:five_prime_utr;Parent=Msa1162780-mRNA-1
chr7_4 CDS 53569692 53569916 53569692 ID=Msa1162780-mRNA-1:cds;Parent=Msa1162780-mRNA-1
chr7_4 CDS 53570238 53570624 53570238 ID=Msa1162780-mRNA-1:cds;Parent=Msa1162780-mRNA-1
chr7_4 CDS 53571405 53571725 53571405 ID=Msa1162780-mRNA-1:cds;Parent=Msa1162780-mRNA-1
chr7_4 three_prime_UTR 53571726 53572038 53571726 ID=Msa1162780-mRNA-1:three_prime_utr;Parent=Msa1162780-mRNA-1
Gene Sequence

>Msa1162780

ATGGCTCCGGGAGGAGGTATTTTCAAAGAAGTTCTCGAGTCTCACCTCTTGACTTCAGATTATGAAACAGGCAAGGCTAAATCTGAAGCCAAGATTAACTGTACACTTACAAAATCCACTAGTGTTGGATTGAATGGAAAGCACGGAACTAGTTCAAAGAATGGTGTGCATGACTTACTCGGGTGCGCTGTCTGCAACAATTTGATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACGTTATGTTCAAATTGTAAGATTGAAGTCCATAATCTCTGTCCCACCTGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTGGAGAAAGTGGCGGAATCTTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGGTGTAATGATATTTTCCCTTACTATGCAAAGCTTAAACATGAGCAAAATTGTGGATTTCGTCCATACAATTGTCCCTATGCTGGATCTGAGTGCTCCGTGATGGGCGACATTCCATCTCTTGTTGATCATCTCAAGGATGAACACAAGGTTGACATGCATGATGGATTCACCTTCAATCATCGATATGTCAAAACAAACCCACATGAAGTTGAAAATGCCACATGGATGCTCACTGTTTTCAATTGCTATGGAAAGCATTTCTGTTTGCACTTTGAGGCTTTCCAGCTTGGTACAGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGTTACAGCTTAGAAGTCGGTGCATATGGGCGCAAACTTATATGGCAAGGAATTCCTAGGAGCATACGCGACAGTCATAGTAAAGTTAGAGATAGTCAAGATGGACTAATAATTCAGAGGAATCAAGCCCTTTATTTTTCGGGTGGGGATAAACAGGAGTTGAAATTGAGAATCACCGGTCGTATATGGAAAGAAGATTGA

Protein sequence

>Msa1162780

MAPGGGIFKEVLESHLLTSDYETGKAKSEAKINCTLTKSTSVGLNGKHGTSSKNGVHDLLGCAVCNNLMYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSVMGDIPSLVDHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGAYGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED*