Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772780 | RHN54067.1 | 95.062 | 324 | 16 | 0 | 2 | 325 | 24 | 347 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772780 | sp|F4JRB0|HHO5_ARATH | 39.295 | 369 | 156 | 12 | 6 | 329 | 12 | 357 | 1.43e-56 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772780 | A0A396HTM4 | 95.062 | 324 | 16 | 0 | 2 | 325 | 24 | 347 | 0.0 | 571 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0772780 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0715370 | Msa0772780 | 0.970802 | 3.569713e-132 | -8.615850e-47 |
| Msa0772780 | Msa0798280 | 0.917303 | 6.256380e-86 | -8.615850e-47 |
| Msa0772780 | Msa0836790 | 0.890040 | 1.410538e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772780 | MtrunA17_Chr5g0402631 | 95.062 | 324 | 16 | 0 | 2 | 325 | 24 | 347 | 0.0 | 571 |
| Msa0772780 | MtrunA17_Chr4g0045361 | 39.268 | 410 | 149 | 13 | 5 | 324 | 8 | 407 | 1.49e-65 | 212 |
| Msa0772780 | MtrunA17_Chr4g0062921 | 35.505 | 307 | 139 | 9 | 9 | 263 | 6 | 305 | 2.58e-40 | 146 |
| Msa0772780 | MtrunA17_Chr5g0422621 | 36.398 | 261 | 102 | 8 | 39 | 253 | 17 | 259 | 5.59e-36 | 133 |
| Msa0772780 | MtrunA17_Chr1g0198601 | 33.333 | 330 | 143 | 14 | 34 | 293 | 2 | 324 | 9.15e-36 | 133 |
| Msa0772780 | MtrunA17_Chr3g0137101 | 39.200 | 125 | 64 | 5 | 191 | 306 | 197 | 318 | 1.68e-14 | 74.3 |
| Msa0772780 | MtrunA17_Chr2g0291021 | 55.714 | 70 | 30 | 1 | 192 | 261 | 49 | 117 | 2.06e-14 | 73.2 |
| Msa0772780 | MtrunA17_Chr7g0254981 | 63.636 | 55 | 20 | 0 | 192 | 246 | 50 | 104 | 2.99e-14 | 72.0 |
| Msa0772780 | MtrunA17_Chr5g0417521 | 60.000 | 55 | 22 | 0 | 192 | 246 | 15 | 69 | 3.92e-14 | 72.4 |
| Msa0772780 | MtrunA17_Chr1g0197171 | 58.621 | 58 | 24 | 0 | 189 | 246 | 41 | 98 | 1.37e-13 | 70.1 |
| Msa0772780 | MtrunA17_Chr4g0042451 | 42.697 | 89 | 50 | 1 | 192 | 279 | 17 | 105 | 2.20e-13 | 70.1 |
| Msa0772780 | MtrunA17_Chr1g0175081 | 50.877 | 57 | 28 | 0 | 190 | 246 | 20 | 76 | 2.62e-13 | 65.5 |
| Msa0772780 | MtrunA17_Chr1g0161431 | 48.649 | 74 | 37 | 1 | 189 | 262 | 197 | 269 | 2.66e-13 | 70.9 |
| Msa0772780 | MtrunA17_Chr1g0149841 | 50.769 | 65 | 31 | 1 | 187 | 251 | 186 | 249 | 2.90e-13 | 70.5 |
| Msa0772780 | MtrunA17_Chr2g0294911 | 50.000 | 72 | 35 | 1 | 189 | 260 | 208 | 278 | 2.94e-13 | 70.5 |
| Msa0772780 | MtrunA17_Chr4g0067981 | 55.738 | 61 | 26 | 1 | 191 | 251 | 214 | 273 | 3.57e-13 | 70.5 |
| Msa0772780 | MtrunA17_Chr5g0400241 | 42.222 | 90 | 46 | 3 | 163 | 251 | 285 | 369 | 3.58e-13 | 70.1 |
| Msa0772780 | MtrunA17_Chr7g0255711 | 51.667 | 60 | 28 | 1 | 191 | 250 | 90 | 148 | 4.47e-13 | 68.9 |
| Msa0772780 | MtrunA17_Chr1g0190301 | 53.731 | 67 | 30 | 1 | 189 | 255 | 172 | 237 | 5.40e-13 | 69.3 |
| Msa0772780 | MtrunA17_Chr2g0290991 | 60.000 | 55 | 22 | 0 | 192 | 246 | 39 | 93 | 6.32e-13 | 68.6 |
| Msa0772780 | MtrunA17_Chr8g0356501 | 60.000 | 55 | 22 | 0 | 192 | 246 | 37 | 91 | 1.07e-12 | 68.2 |
| Msa0772780 | MtrunA17_Chr7g0261911 | 52.239 | 67 | 31 | 1 | 189 | 255 | 259 | 324 | 1.25e-12 | 68.6 |
| Msa0772780 | MtrunA17_Chr2g0310011 | 60.000 | 55 | 22 | 0 | 192 | 246 | 35 | 89 | 1.63e-12 | 67.4 |
| Msa0772780 | MtrunA17_Chr2g0304841 | 50.000 | 62 | 30 | 1 | 189 | 250 | 210 | 270 | 1.89e-12 | 68.2 |
| Msa0772780 | MtrunA17_Chr3g0109981 | 46.988 | 83 | 40 | 1 | 163 | 245 | 249 | 327 | 2.18e-12 | 67.8 |
| Msa0772780 | MtrunA17_Chr2g0321461 | 38.679 | 106 | 50 | 2 | 141 | 246 | 9 | 99 | 3.13e-12 | 67.0 |
| Msa0772780 | MtrunA17_Chr7g0274471 | 59.259 | 54 | 22 | 0 | 192 | 245 | 218 | 271 | 3.41e-12 | 67.0 |
| Msa0772780 | MtrunA17_Chr5g0409731 | 47.222 | 72 | 36 | 1 | 192 | 261 | 25 | 96 | 5.30e-12 | 65.5 |
| Msa0772780 | MtrunA17_Chr4g0031961 | 45.312 | 64 | 34 | 1 | 188 | 251 | 127 | 189 | 5.85e-12 | 65.5 |
| Msa0772780 | MtrunA17_Chr1g0149831 | 47.619 | 63 | 29 | 1 | 189 | 251 | 125 | 183 | 6.65e-12 | 64.3 |
| Msa0772780 | MtrunA17_Chr1g0175091 | 54.386 | 57 | 26 | 0 | 190 | 246 | 256 | 312 | 6.67e-12 | 66.2 |
| Msa0772780 | MtrunA17_Chr6g0479431 | 37.815 | 119 | 57 | 3 | 158 | 270 | 175 | 282 | 6.73e-12 | 65.9 |
| Msa0772780 | MtrunA17_Chr6g0461641 | 52.727 | 55 | 26 | 0 | 192 | 246 | 42 | 96 | 1.11e-11 | 65.5 |
| Msa0772780 | MtrunA17_Chr1g0210911 | 59.184 | 49 | 20 | 0 | 197 | 245 | 27 | 75 | 1.13e-11 | 65.1 |
| Msa0772780 | MtrunA17_Chr5g0410741 | 31.061 | 132 | 78 | 2 | 153 | 284 | 184 | 302 | 2.06e-11 | 64.7 |
| Msa0772780 | MtrunA17_Chr4g0074411 | 50.000 | 60 | 29 | 1 | 191 | 250 | 200 | 258 | 2.38e-11 | 64.7 |
| Msa0772780 | MtrunA17_Chr7g0258551 | 53.571 | 56 | 26 | 0 | 190 | 245 | 210 | 265 | 3.83e-11 | 63.5 |
| Msa0772780 | MtrunA17_Chr4g0054981 | 43.939 | 66 | 36 | 1 | 186 | 251 | 304 | 368 | 4.00e-11 | 63.9 |
| Msa0772780 | MtrunA17_Chr8g0366281 | 50.820 | 61 | 30 | 0 | 185 | 245 | 166 | 226 | 4.54e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772780 | AT4G37180.1 | 40.055 | 362 | 156 | 11 | 6 | 329 | 12 | 350 | 1.92e-60 | 197 |
| Msa0772780 | AT4G37180.2 | 39.295 | 369 | 156 | 12 | 6 | 329 | 12 | 357 | 1.46e-57 | 190 |
| Msa0772780 | AT4G37180.3 | 43.985 | 266 | 103 | 8 | 6 | 242 | 12 | 260 | 1.47e-51 | 172 |
| Msa0772780 | AT2G03500.1 | 38.112 | 286 | 133 | 8 | 9 | 250 | 6 | 291 | 1.73e-42 | 152 |
| Msa0772780 | AT1G68670.1 | 35.461 | 282 | 118 | 7 | 31 | 256 | 6 | 279 | 2.77e-40 | 145 |
| Msa0772780 | AT1G25550.1 | 35.636 | 275 | 116 | 7 | 31 | 256 | 10 | 272 | 4.50e-40 | 144 |
| Msa0772780 | AT1G49560.1 | 56.154 | 130 | 37 | 4 | 180 | 290 | 171 | 299 | 6.79e-35 | 130 |
| Msa0772780 | AT1G25550.2 | 34.483 | 261 | 111 | 6 | 31 | 242 | 10 | 259 | 1.13e-33 | 125 |
| Msa0772780 | AT1G13300.1 | 85.000 | 60 | 9 | 0 | 191 | 250 | 180 | 239 | 3.98e-29 | 115 |
| Msa0772780 | AT1G49560.2 | 70.833 | 72 | 12 | 1 | 180 | 242 | 171 | 242 | 4.18e-26 | 105 |
| Msa0772780 | AT3G25790.1 | 81.818 | 55 | 10 | 0 | 196 | 250 | 200 | 254 | 1.88e-25 | 105 |
| Msa0772780 | AT3G25790.2 | 80.851 | 47 | 9 | 0 | 196 | 242 | 200 | 246 | 2.41e-20 | 89.4 |
| Msa0772780 | AT2G01060.1 | 54.930 | 71 | 31 | 1 | 185 | 255 | 8 | 77 | 2.49e-14 | 72.8 |
| Msa0772780 | AT2G20400.2 | 44.828 | 87 | 47 | 1 | 192 | 278 | 231 | 316 | 2.98e-14 | 73.6 |
| Msa0772780 | AT2G20400.1 | 46.512 | 86 | 43 | 2 | 192 | 277 | 231 | 313 | 1.21e-13 | 71.6 |
| Msa0772780 | AT2G06020.1 | 50.000 | 64 | 32 | 0 | 183 | 246 | 77 | 140 | 1.45e-13 | 70.9 |
| Msa0772780 | AT4G13640.1 | 61.818 | 55 | 21 | 0 | 192 | 246 | 37 | 91 | 1.62e-13 | 70.5 |
| Msa0772780 | AT4G13640.2 | 61.818 | 55 | 21 | 0 | 192 | 246 | 37 | 91 | 1.65e-13 | 70.5 |
| Msa0772780 | AT5G05090.1 | 51.667 | 60 | 28 | 1 | 191 | 250 | 80 | 138 | 2.09e-13 | 69.7 |
| Msa0772780 | AT3G10760.1 | 51.667 | 60 | 28 | 1 | 191 | 250 | 104 | 162 | 3.19e-13 | 70.1 |
| Msa0772780 | AT3G24120.1 | 60.000 | 55 | 22 | 0 | 192 | 246 | 41 | 95 | 3.28e-13 | 69.7 |
| Msa0772780 | AT3G24120.2 | 60.000 | 55 | 22 | 0 | 192 | 246 | 41 | 95 | 3.54e-13 | 69.3 |
| Msa0772780 | AT5G59570.2 | 46.875 | 64 | 33 | 1 | 188 | 251 | 137 | 199 | 3.96e-13 | 69.3 |
| Msa0772780 | AT5G59570.1 | 46.875 | 64 | 33 | 1 | 188 | 251 | 137 | 199 | 3.96e-13 | 69.3 |
| Msa0772780 | AT2G40970.1 | 51.667 | 60 | 28 | 1 | 191 | 250 | 104 | 162 | 6.37e-13 | 68.2 |
| Msa0772780 | AT3G12730.1 | 58.182 | 55 | 23 | 0 | 192 | 246 | 23 | 77 | 8.19e-13 | 67.4 |
| Msa0772780 | AT3G16857.3 | 54.098 | 61 | 27 | 1 | 191 | 251 | 166 | 225 | 9.30e-13 | 69.3 |
| Msa0772780 | AT3G16857.2 | 54.098 | 61 | 27 | 1 | 191 | 251 | 236 | 295 | 1.07e-12 | 69.3 |
| Msa0772780 | AT3G16857.1 | 54.098 | 61 | 27 | 1 | 191 | 251 | 236 | 295 | 1.19e-12 | 69.3 |
| Msa0772780 | AT5G58080.1 | 49.206 | 63 | 31 | 1 | 189 | 251 | 191 | 252 | 1.38e-12 | 68.9 |
| Msa0772780 | AT3G04030.1 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 2.31e-12 | 67.8 |
| Msa0772780 | AT3G04030.3 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 2.49e-12 | 67.8 |
| Msa0772780 | AT5G06800.3 | 54.545 | 55 | 25 | 0 | 192 | 246 | 192 | 246 | 2.73e-12 | 66.6 |
| Msa0772780 | AT1G79430.2 | 60.000 | 55 | 22 | 0 | 192 | 246 | 34 | 88 | 3.39e-12 | 67.0 |
| Msa0772780 | AT1G67710.3 | 50.746 | 67 | 33 | 0 | 185 | 251 | 112 | 178 | 3.53e-12 | 67.4 |
| Msa0772780 | AT1G67710.2 | 50.746 | 67 | 33 | 0 | 185 | 251 | 121 | 187 | 3.57e-12 | 67.4 |
| Msa0772780 | AT1G67710.1 | 50.746 | 67 | 33 | 0 | 185 | 251 | 186 | 252 | 4.06e-12 | 67.4 |
| Msa0772780 | AT5G18240.2 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 4.80e-12 | 67.0 |
| Msa0772780 | AT5G18240.3 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 4.80e-12 | 67.0 |
| Msa0772780 | AT3G13040.3 | 50.000 | 64 | 32 | 0 | 183 | 246 | 232 | 295 | 4.92e-12 | 67.0 |
| Msa0772780 | AT3G13040.1 | 50.000 | 64 | 32 | 0 | 183 | 246 | 232 | 295 | 4.92e-12 | 67.0 |
| Msa0772780 | AT3G13040.2 | 50.000 | 64 | 32 | 0 | 183 | 246 | 232 | 295 | 4.92e-12 | 67.0 |
| Msa0772780 | AT5G18240.5 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 5.47e-12 | 66.6 |
| Msa0772780 | AT5G18240.1 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 5.61e-12 | 66.6 |
| Msa0772780 | AT5G18240.4 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 5.61e-12 | 66.6 |
| Msa0772780 | AT3G46640.2 | 47.541 | 61 | 31 | 1 | 191 | 251 | 143 | 202 | 5.71e-12 | 66.2 |
| Msa0772780 | AT3G46640.1 | 47.541 | 61 | 31 | 1 | 191 | 251 | 143 | 202 | 5.71e-12 | 66.2 |
| Msa0772780 | AT4G17695.1 | 41.237 | 97 | 47 | 2 | 177 | 272 | 148 | 235 | 5.78e-12 | 66.2 |
| Msa0772780 | AT3G04450.3 | 50.820 | 61 | 30 | 0 | 185 | 245 | 231 | 291 | 5.94e-12 | 65.9 |
| Msa0772780 | AT5G45580.1 | 56.364 | 55 | 24 | 0 | 192 | 246 | 7 | 61 | 6.40e-12 | 65.5 |
| Msa0772780 | AT5G45580.2 | 56.364 | 55 | 24 | 0 | 192 | 246 | 23 | 77 | 6.94e-12 | 65.5 |
| Msa0772780 | AT3G46640.3 | 47.541 | 61 | 31 | 1 | 191 | 251 | 143 | 202 | 7.59e-12 | 65.9 |
| Msa0772780 | AT5G06800.1 | 54.545 | 55 | 25 | 0 | 192 | 246 | 192 | 246 | 7.73e-12 | 66.2 |
| Msa0772780 | AT5G06800.2 | 54.545 | 55 | 25 | 0 | 192 | 246 | 192 | 246 | 7.95e-12 | 66.2 |
| Msa0772780 | AT1G32240.2 | 38.776 | 98 | 51 | 1 | 182 | 279 | 203 | 291 | 8.33e-12 | 65.9 |
| Msa0772780 | AT1G32240.1 | 38.776 | 98 | 51 | 1 | 182 | 279 | 203 | 291 | 1.03e-11 | 65.9 |
| Msa0772780 | AT3G04450.1 | 50.820 | 61 | 30 | 0 | 185 | 245 | 231 | 291 | 1.06e-11 | 65.9 |
| Msa0772780 | AT3G04450.4 | 50.820 | 61 | 30 | 0 | 185 | 245 | 191 | 251 | 1.23e-11 | 65.5 |
| Msa0772780 | AT3G04450.2 | 50.820 | 61 | 30 | 0 | 185 | 245 | 191 | 251 | 1.23e-11 | 65.5 |
| Msa0772780 | AT2G01760.2 | 50.000 | 62 | 30 | 1 | 190 | 251 | 226 | 286 | 1.52e-11 | 65.5 |
| Msa0772780 | AT2G01760.3 | 50.000 | 62 | 30 | 1 | 190 | 251 | 133 | 193 | 1.53e-11 | 64.7 |
| Msa0772780 | AT2G01760.1 | 50.000 | 62 | 30 | 1 | 190 | 251 | 198 | 258 | 1.59e-11 | 65.1 |
| Msa0772780 | AT1G69580.1 | 50.909 | 55 | 27 | 0 | 192 | 246 | 34 | 88 | 1.61e-11 | 65.1 |
| Msa0772780 | AT2G25180.1 | 46.377 | 69 | 36 | 1 | 191 | 259 | 194 | 261 | 1.65e-11 | 65.5 |
| Msa0772780 | AT1G69580.2 | 50.909 | 55 | 27 | 0 | 192 | 246 | 34 | 88 | 1.78e-11 | 64.7 |
| Msa0772780 | AT5G29000.4 | 52.632 | 57 | 27 | 0 | 189 | 245 | 228 | 284 | 2.13e-11 | 64.3 |
| Msa0772780 | AT5G16560.1 | 51.562 | 64 | 31 | 0 | 182 | 245 | 209 | 272 | 2.49e-11 | 64.7 |
| Msa0772780 | AT4G31920.1 | 41.892 | 74 | 42 | 1 | 191 | 264 | 182 | 254 | 2.51e-11 | 65.1 |
| Msa0772780 | AT4G28610.1 | 55.556 | 54 | 24 | 0 | 192 | 245 | 225 | 278 | 2.79e-11 | 64.7 |
| Msa0772780 | AT5G29000.1 | 52.632 | 57 | 27 | 0 | 189 | 245 | 185 | 241 | 4.56e-11 | 63.9 |
| Msa0772780 | AT5G29000.3 | 52.632 | 57 | 27 | 0 | 189 | 245 | 185 | 241 | 4.56e-11 | 63.9 |
| Msa0772780 | AT5G29000.2 | 52.632 | 57 | 27 | 0 | 189 | 245 | 228 | 284 | 4.65e-11 | 63.9 |
| Msa0772780 | AT5G42630.2 | 53.333 | 60 | 28 | 0 | 186 | 245 | 99 | 158 | 6.15e-11 | 62.0 |
| Msa0772780 | AT4G04605.1 | 53.571 | 56 | 26 | 0 | 190 | 245 | 12 | 67 | 9.35e-11 | 61.2 |
Find 76 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGGTGGAGGGGTATTTA+TGG | 0.172244 | 5_2:+47134428 | Msa0772780:CDS |
| CAGCCACTCCTAAGCAAATT+AGG | 0.199099 | 5_2:+47135218 | Msa0772780:CDS |
| AAAATTAGTTACCATCATTA+AGG | 0.265474 | 5_2:-47134042 | None:intergenic |
| CCAGCACCTCCTTTGTTTCC+TGG | 0.269810 | 5_2:-47134619 | None:intergenic |
| AAAAGTTGGGTTGATGAAAA+TGG | 0.274484 | 5_2:+47134181 | Msa0772780:CDS |
| ATTCCCAGTTTCGTCAATTC+AGG | 0.284606 | 5_2:+47135449 | Msa0772780:CDS |
| CAGCACTCAGCAAAATTTAG+AGG | 0.286569 | 5_2:-47135712 | None:intergenic |
| AGCAATCAGATTGCAGGAAT+TGG | 0.302511 | 5_2:+47135643 | Msa0772780:CDS |
| CTCCTTGGTGGATCTGTTCA+AGG | 0.312173 | 5_2:+47135579 | Msa0772780:CDS |
| GCCTCCTGAATTGACGAAAC+TGG | 0.313674 | 5_2:-47135453 | None:intergenic |
| AATGGTGGAGGGGTATTTAT+GGG | 0.317942 | 5_2:+47134429 | Msa0772780:CDS |
| AAGAGTGGTGATGGTAGTTC+TGG | 0.342533 | 5_2:+47134531 | Msa0772780:CDS |
| AACCTTTGCAGCAGAGTTCC+AGG | 0.347695 | 5_2:+47134601 | Msa0772780:CDS |
| ACAAGCTAAGAGCTTTAGTT+TGG | 0.377820 | 5_2:+47134482 | Msa0772780:CDS |
| ACTGTGATAATAAGAAGAAT+TGG | 0.383175 | 5_2:+47134219 | Msa0772780:CDS |
| AGCCACTCCTAAGCAAATTA+GGG | 0.392450 | 5_2:+47135219 | Msa0772780:CDS |
| CTCAGAGTCTGTTTCTCCAC+AGG | 0.393005 | 5_2:+47135539 | Msa0772780:CDS |
| TGCAAAGGTTGCGGCGGCTG+AGG | 0.403383 | 5_2:-47134588 | None:intergenic |
| CATCCATACTGTTTCTTCCA+TGG | 0.409764 | 5_2:-47135611 | None:intergenic |
| TTGTGATTATGCAGAAGTAT+AGG | 0.413901 | 5_2:+47135412 | Msa0772780:intron |
| CCTCTTACTCCTCTTCTCCT+TGG | 0.417068 | 5_2:+47135564 | Msa0772780:CDS |
| TCTTTCATATCTGATATTGA+TGG | 0.420948 | 5_2:+47135921 | Msa0772780:three_prime_UTR |
| AAGATGAGCAATCAGATTGC+AGG | 0.425444 | 5_2:+47135637 | Msa0772780:CDS |
| TAAGGAGGAGTATGGAAAGA+GGG | 0.427844 | 5_2:-47134024 | None:intergenic |
| TAATAAGTTAGCCTTGTATA+TGG | 0.434530 | 5_2:+47135476 | Msa0772780:CDS |
| ACCATCATTAAGGAGGAGTA+TGG | 0.434982 | 5_2:-47134032 | None:intergenic |
| AAGCCATGGAAGAAACAGTA+TGG | 0.440126 | 5_2:+47135608 | Msa0772780:CDS |
| CTTACTCCTCTTCTCCTTGG+TGG | 0.445651 | 5_2:+47135567 | Msa0772780:CDS |
| ACAATGAAGGTGATGATGAT+AGG | 0.445952 | 5_2:+47134388 | Msa0772780:CDS |
| TATTGTCACTCACTTGCAAA+TGG | 0.459590 | 5_2:-47135285 | None:intergenic |
| TCCATACTCCTCCTTAATGA+TGG | 0.469852 | 5_2:+47134031 | Msa0772780:CDS |
| CCAAGGAGAAGAGGAGTAAG+AGG | 0.473664 | 5_2:-47135564 | None:intergenic |
| TTCCCTAATTTGCTTAGGAG+TGG | 0.487933 | 5_2:-47135221 | None:intergenic |
| TTAAGGAGGAGTATGGAAAG+AGG | 0.491286 | 5_2:-47134025 | None:intergenic |
| CAGGAATTGGAAAAGTGATC+AGG | 0.500799 | 5_2:+47135656 | Msa0772780:CDS |
| ATTTAATGAAAATCTGTTGA+AGG | 0.503957 | 5_2:+47134452 | Msa0772780:CDS |
| TTCCTGGAACTCTGCTGCAA+AGG | 0.504800 | 5_2:-47134603 | None:intergenic |
| GTTGAAGTGCATCAACAAAT+CGG | 0.508453 | 5_2:-47134659 | None:intergenic |
| TGATGACTTAGTTCATAGCT+TGG | 0.508826 | 5_2:+47133961 | Msa0772780:CDS |
| CCTCCTGAATTGACGAAACT+GGG | 0.520520 | 5_2:-47135452 | None:intergenic |
| ACAGTTACATGCAACTGTAC+TGG | 0.524248 | 5_2:-47135959 | None:intergenic |
| CCAGGAAACAAAGGAGGTGC+TGG | 0.526510 | 5_2:+47134619 | Msa0772780:CDS |
| GTTCAAGGTCTTTCAAGCCA+TGG | 0.531430 | 5_2:+47135594 | Msa0772780:CDS |
| GAACTCTGCTGCAAAGGTTG+CGG | 0.536482 | 5_2:-47134597 | None:intergenic |
| AGGGAAAAGATGCAAGTGGA+TGG | 0.538779 | 5_2:+47135238 | Msa0772780:CDS |
| TCAGAGTCTGTTTCTCCACA+GGG | 0.539092 | 5_2:+47135540 | Msa0772780:CDS |
| GGATGAGTTCAGCTCAGCTA+TGG | 0.541177 | 5_2:+47134240 | Msa0772780:CDS |
| GGAAATTCAAAGAGTGGTGA+TGG | 0.543852 | 5_2:+47134522 | Msa0772780:CDS |
| GTTGTTGAGGAAATGAGAAA+CGG | 0.545414 | 5_2:-47133897 | None:intergenic |
| TAATGAAAATCTGTTGAAGG+AGG | 0.547757 | 5_2:+47134455 | Msa0772780:CDS |
| CTCTGCTGCAAAGGTTGCGG+CGG | 0.547761 | 5_2:-47134594 | None:intergenic |
| TGGTTTGAACAACGTTGTTG+AGG | 0.552246 | 5_2:-47133910 | None:intergenic |
| TGTGAAGAAGATACATCAAA+GGG | 0.552624 | 5_2:+47135510 | Msa0772780:CDS |
| TTCATATCTGATATTGATGG+AGG | 0.558322 | 5_2:+47135924 | Msa0772780:three_prime_UTR |
| CCCAGTTTCGTCAATTCAGG+AGG | 0.558843 | 5_2:+47135452 | Msa0772780:CDS |
| ACAAAGGAGGTGCTGGTCGT+CGG | 0.559002 | 5_2:+47134626 | Msa0772780:CDS |
| CAACAGCTTGGTGGAGCACA+TGG | 0.565013 | 5_2:+47134678 | Msa0772780:CDS |
| GTTGATGCACTTCAACAGCT+TGG | 0.565906 | 5_2:+47134666 | Msa0772780:CDS |
| ACAGAAGAGTAATGGTGGAG+GGG | 0.566775 | 5_2:+47134419 | Msa0772780:CDS |
| ACAGATCCACCAAGGAGAAG+AGG | 0.569987 | 5_2:-47135573 | None:intergenic |
| GTGTTACAGAAGAGTAATGG+TGG | 0.573520 | 5_2:+47134414 | Msa0772780:CDS |
| ATGTGAAGAAGATACATCAA+AGG | 0.582691 | 5_2:+47135509 | Msa0772780:CDS |
| GATGCACTTCAACAGCTTGG+TGG | 0.583631 | 5_2:+47134669 | Msa0772780:CDS |
| ATTAGTTACCATCATTAAGG+AGG | 0.585189 | 5_2:-47134039 | None:intergenic |
| AGCAGAGTTCCAGGAAACAA+AGG | 0.588997 | 5_2:+47134610 | Msa0772780:CDS |
| ATTGTGTTACAGAAGAGTAA+TGG | 0.592672 | 5_2:+47134411 | Msa0772780:CDS |
| TTACAGAAGAGTAATGGTGG+AGG | 0.599891 | 5_2:+47134417 | Msa0772780:CDS |
| TACAGAAGAGTAATGGTGGA+GGG | 0.606656 | 5_2:+47134418 | Msa0772780:CDS |
| AATTAGGGAAAAGATGCAAG+TGG | 0.615575 | 5_2:+47135234 | Msa0772780:CDS |
| TTGATCTTGAGCCATATACA+AGG | 0.616538 | 5_2:-47135487 | None:intergenic |
| AGTCATGGAAATTCAAAGAG+TGG | 0.617489 | 5_2:+47134516 | Msa0772780:CDS |
| TTGGTGTCTGAAGTGAGTCA+TGG | 0.626831 | 5_2:+47134501 | Msa0772780:CDS |
| AAGTTTCTGAGACATGTCGT+TGG | 0.646359 | 5_2:-47133930 | None:intergenic |
| AGAGGAGTAAGAGGACCCTG+TGG | 0.650364 | 5_2:-47135555 | None:intergenic |
| AGAGTTCCAGGAAACAAAGG+AGG | 0.672803 | 5_2:+47134613 | Msa0772780:CDS |
| GACCTTGAACAGATCCACCA+AGG | 0.687479 | 5_2:-47135581 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCTAATTAATTTTTG+TGG | + | chr5_2:47134059-47134078 | Msa0772780:intron | 10.0% |
| !! | AAAATTAACAAAAAAGAAAA+AGG | - | chr5_2:47134108-47134127 | None:intergenic | 10.0% |
| !! | AAAAATCACAATTAAAAAAA+AGG | - | chr5_2:47134319-47134338 | None:intergenic | 10.0% |
| !!! | AATTTTCTAATTAATTTTTG+TGG | + | chr5_2:47134059-47134078 | Msa0772780:intron | 10.0% |
| !! | AAAATTAACAAAAAAGAAAA+AGG | - | chr5_2:47134108-47134127 | None:intergenic | 10.0% |
| !! | AAAAATCACAATTAAAAAAA+AGG | - | chr5_2:47134319-47134338 | None:intergenic | 10.0% |
| !! | AAAAAGAAAAAACATCATCA+TGG | + | chr5_2:47133826-47133845 | Msa0772780:exon | 20.0% |
| !! | AAAATTAGTTACCATCATTA+AGG | - | chr5_2:47134045-47134064 | None:intergenic | 20.0% |
| !! | AATGATGAAAAAGAAAAAGT+TGG | + | chr5_2:47134167-47134186 | Msa0772780:CDS | 20.0% |
| !! | ATGATGAAAAAGAAAAAGTT+GGG | + | chr5_2:47134168-47134187 | Msa0772780:CDS | 20.0% |
| !! | ATTTAATGAAAATCTGTTGA+AGG | + | chr5_2:47134452-47134471 | Msa0772780:CDS | 20.0% |
| !!! | TCTTAGTGTATATTTTGTTT+TGG | + | chr5_2:47134777-47134796 | Msa0772780:intron | 20.0% |
| !!! | TGTATATTTTGTTTTGGATT+TGG | + | chr5_2:47134783-47134802 | Msa0772780:intron | 20.0% |
| !!! | AGTTCTAAGTTATAACAAAT+AGG | - | chr5_2:47135094-47135113 | None:intergenic | 20.0% |
| !! | TATGAAAAACAAAATCACTA+TGG | - | chr5_2:47135843-47135862 | None:intergenic | 20.0% |
| !!! | TGTTTTTCATAATTATGCTA+TGG | + | chr5_2:47135852-47135871 | Msa0772780:three_prime_UTR | 20.0% |
| !! | AAAAAGAAAAAACATCATCA+TGG | + | chr5_2:47133826-47133845 | Msa0772780:exon | 20.0% |
| !! | AAAATTAGTTACCATCATTA+AGG | - | chr5_2:47134045-47134064 | None:intergenic | 20.0% |
| !! | AATGATGAAAAAGAAAAAGT+TGG | + | chr5_2:47134167-47134186 | Msa0772780:CDS | 20.0% |
| !! | ATGATGAAAAAGAAAAAGTT+GGG | + | chr5_2:47134168-47134187 | Msa0772780:CDS | 20.0% |
| !! | ATTTAATGAAAATCTGTTGA+AGG | + | chr5_2:47134452-47134471 | Msa0772780:CDS | 20.0% |
| !!! | TCTTAGTGTATATTTTGTTT+TGG | + | chr5_2:47134777-47134796 | Msa0772780:intron | 20.0% |
| !!! | TGTATATTTTGTTTTGGATT+TGG | + | chr5_2:47134783-47134802 | Msa0772780:intron | 20.0% |
| !!! | AGTTCTAAGTTATAACAAAT+AGG | - | chr5_2:47135094-47135113 | None:intergenic | 20.0% |
| !! | TATGAAAAACAAAATCACTA+TGG | - | chr5_2:47135843-47135862 | None:intergenic | 20.0% |
| !!! | TGTTTTTCATAATTATGCTA+TGG | + | chr5_2:47135852-47135871 | Msa0772780:three_prime_UTR | 20.0% |
| !!! | TTGTGGTATTTCTTGTTTTT+TGG | + | chr5_2:47134076-47134095 | Msa0772780:intron | 25.0% |
| ! | ACTGTGATAATAAGAAGAAT+TGG | + | chr5_2:47134219-47134238 | Msa0772780:CDS | 25.0% |
| !! | ATGGACTAATCAAACAAAAA+CGG | + | chr5_2:47134259-47134278 | Msa0772780:CDS | 25.0% |
| !!! | TTTTTTTGGTAGAACAATGA+AGG | + | chr5_2:47134375-47134394 | Msa0772780:intron | 25.0% |
| !! | CAATTTGGAATTGAAATTGT+GGG | + | chr5_2:47134823-47134842 | Msa0772780:intron | 25.0% |
| ! | AGATTACATGACATGTTATT+AGG | + | chr5_2:47135054-47135073 | Msa0772780:intron | 25.0% |
| ! | GATTACATGACATGTTATTA+GGG | + | chr5_2:47135055-47135074 | Msa0772780:intron | 25.0% |
| !! | ATGTTATTAGGGATTAGTAT+AGG | + | chr5_2:47135066-47135085 | Msa0772780:intron | 25.0% |
| ! | TACAAAAAAGAAAACCAGTT+AGG | - | chr5_2:47135197-47135216 | None:intergenic | 25.0% |
| ! | ACTAATAATCGTATTAACCA+TGG | - | chr5_2:47135334-47135353 | None:intergenic | 25.0% |
| !!! | TAATAAGTTAGCCTTGTATA+TGG | + | chr5_2:47135476-47135495 | Msa0772780:CDS | 25.0% |
| ! | TCTTTCATATCTGATATTGA+TGG | + | chr5_2:47135921-47135940 | Msa0772780:three_prime_UTR | 25.0% |
| !!! | TTGTGGTATTTCTTGTTTTT+TGG | + | chr5_2:47134076-47134095 | Msa0772780:intron | 25.0% |
| ! | ACTGTGATAATAAGAAGAAT+TGG | + | chr5_2:47134219-47134238 | Msa0772780:CDS | 25.0% |
| !! | ATGGACTAATCAAACAAAAA+CGG | + | chr5_2:47134259-47134278 | Msa0772780:CDS | 25.0% |
| !!! | TTTTTTTGGTAGAACAATGA+AGG | + | chr5_2:47134375-47134394 | Msa0772780:intron | 25.0% |
| !! | CAATTTGGAATTGAAATTGT+GGG | + | chr5_2:47134823-47134842 | Msa0772780:intron | 25.0% |
| ! | AGATTACATGACATGTTATT+AGG | + | chr5_2:47135054-47135073 | Msa0772780:intron | 25.0% |
| ! | GATTACATGACATGTTATTA+GGG | + | chr5_2:47135055-47135074 | Msa0772780:intron | 25.0% |
| !! | ATGTTATTAGGGATTAGTAT+AGG | + | chr5_2:47135066-47135085 | Msa0772780:intron | 25.0% |
| ! | TACAAAAAAGAAAACCAGTT+AGG | - | chr5_2:47135197-47135216 | None:intergenic | 25.0% |
| ! | ACTAATAATCGTATTAACCA+TGG | - | chr5_2:47135334-47135353 | None:intergenic | 25.0% |
| !!! | TAATAAGTTAGCCTTGTATA+TGG | + | chr5_2:47135476-47135495 | Msa0772780:CDS | 25.0% |
| ! | TCTTTCATATCTGATATTGA+TGG | + | chr5_2:47135921-47135940 | Msa0772780:three_prime_UTR | 25.0% |
| ATTAGTTACCATCATTAAGG+AGG | - | chr5_2:47134042-47134061 | None:intergenic | 30.0% | |
| !! | AAAAGTTGGGTTGATGAAAA+TGG | + | chr5_2:47134181-47134200 | Msa0772780:CDS | 30.0% |
| ATTGTGTTACAGAAGAGTAA+TGG | + | chr5_2:47134411-47134430 | Msa0772780:CDS | 30.0% | |
| TAATGAAAATCTGTTGAAGG+AGG | + | chr5_2:47134455-47134474 | Msa0772780:CDS | 30.0% | |
| ! | AGTGTTGCTCTGATTTATTA+TGG | + | chr5_2:47134743-47134762 | Msa0772780:intron | 30.0% |
| GCTCTGATTTATTATGGTAT+AGG | + | chr5_2:47134749-47134768 | Msa0772780:intron | 30.0% | |
| ! | ATAGAGTTGATTCTCCAATT+TGG | + | chr5_2:47134808-47134827 | Msa0772780:intron | 30.0% |
| CCACAATTTCAATTCCAAAT+TGG | - | chr5_2:47134825-47134844 | None:intergenic | 30.0% | |
| ! | CCAATTTGGAATTGAAATTG+TGG | + | chr5_2:47134822-47134841 | Msa0772780:intron | 30.0% |
| AATCAATCTTAGTCGTTGTA+TGG | + | chr5_2:47134914-47134933 | Msa0772780:intron | 30.0% | |
| TAGAACTGTTCGATTAAGAT+TGG | + | chr5_2:47135107-47135126 | Msa0772780:intron | 30.0% | |
| ! | AAATTTTGCAATCAGCAAGA+TGG | - | chr5_2:47135139-47135158 | None:intergenic | 30.0% |
| !!! | ATCTTTTCCCTAATTTGCTT+AGG | - | chr5_2:47135229-47135248 | None:intergenic | 30.0% |
| ATAATCGTATTAACCATGGA+TGG | - | chr5_2:47135330-47135349 | None:intergenic | 30.0% | |
| ! | TTGTGATTATGCAGAAGTAT+AGG | + | chr5_2:47135412-47135431 | Msa0772780:intron | 30.0% |
| ATGTGAAGAAGATACATCAA+AGG | + | chr5_2:47135509-47135528 | Msa0772780:CDS | 30.0% | |
| TGTGAAGAAGATACATCAAA+GGG | + | chr5_2:47135510-47135529 | Msa0772780:CDS | 30.0% | |
| !!! | ATGGTTATTTTAGACTGTTG+TGG | + | chr5_2:47135871-47135890 | Msa0772780:three_prime_UTR | 30.0% |
| TTCATATCTGATATTGATGG+AGG | + | chr5_2:47135924-47135943 | Msa0772780:three_prime_UTR | 30.0% | |
| ATTAGTTACCATCATTAAGG+AGG | - | chr5_2:47134042-47134061 | None:intergenic | 30.0% | |
| !! | AAAAGTTGGGTTGATGAAAA+TGG | + | chr5_2:47134181-47134200 | Msa0772780:CDS | 30.0% |
| ATTGTGTTACAGAAGAGTAA+TGG | + | chr5_2:47134411-47134430 | Msa0772780:CDS | 30.0% | |
| TAATGAAAATCTGTTGAAGG+AGG | + | chr5_2:47134455-47134474 | Msa0772780:CDS | 30.0% | |
| ! | AGTGTTGCTCTGATTTATTA+TGG | + | chr5_2:47134743-47134762 | Msa0772780:intron | 30.0% |
| GCTCTGATTTATTATGGTAT+AGG | + | chr5_2:47134749-47134768 | Msa0772780:intron | 30.0% | |
| ! | ATAGAGTTGATTCTCCAATT+TGG | + | chr5_2:47134808-47134827 | Msa0772780:intron | 30.0% |
| CCACAATTTCAATTCCAAAT+TGG | - | chr5_2:47134825-47134844 | None:intergenic | 30.0% | |
| ! | CCAATTTGGAATTGAAATTG+TGG | + | chr5_2:47134822-47134841 | Msa0772780:intron | 30.0% |
| AATCAATCTTAGTCGTTGTA+TGG | + | chr5_2:47134914-47134933 | Msa0772780:intron | 30.0% | |
| TAGAACTGTTCGATTAAGAT+TGG | + | chr5_2:47135107-47135126 | Msa0772780:intron | 30.0% | |
| ! | AAATTTTGCAATCAGCAAGA+TGG | - | chr5_2:47135139-47135158 | None:intergenic | 30.0% |
| !!! | ATCTTTTCCCTAATTTGCTT+AGG | - | chr5_2:47135229-47135248 | None:intergenic | 30.0% |
| ATAATCGTATTAACCATGGA+TGG | - | chr5_2:47135330-47135349 | None:intergenic | 30.0% | |
| ! | TTGTGATTATGCAGAAGTAT+AGG | + | chr5_2:47135412-47135431 | Msa0772780:intron | 30.0% |
| ATGTGAAGAAGATACATCAA+AGG | + | chr5_2:47135509-47135528 | Msa0772780:CDS | 30.0% | |
| TGTGAAGAAGATACATCAAA+GGG | + | chr5_2:47135510-47135529 | Msa0772780:CDS | 30.0% | |
| !!! | ATGGTTATTTTAGACTGTTG+TGG | + | chr5_2:47135871-47135890 | Msa0772780:three_prime_UTR | 30.0% |
| TTCATATCTGATATTGATGG+AGG | + | chr5_2:47135924-47135943 | Msa0772780:three_prime_UTR | 30.0% | |
| ! | AGGAAATGAGAAACGGTTTT+TGG | - | chr5_2:47133893-47133912 | None:intergenic | 35.0% |
| GTTGTTGAGGAAATGAGAAA+CGG | - | chr5_2:47133900-47133919 | None:intergenic | 35.0% | |
| TGATGACTTAGTTCATAGCT+TGG | + | chr5_2:47133961-47133980 | Msa0772780:CDS | 35.0% | |
| ! | ACAATGAAGGTGATGATGAT+AGG | + | chr5_2:47134388-47134407 | Msa0772780:CDS | 35.0% |
| ! | ACAAGCTAAGAGCTTTAGTT+TGG | + | chr5_2:47134482-47134501 | Msa0772780:CDS | 35.0% |
| AGTCATGGAAATTCAAAGAG+TGG | + | chr5_2:47134516-47134535 | Msa0772780:CDS | 35.0% | |
| GTTGAAGTGCATCAACAAAT+CGG | - | chr5_2:47134662-47134681 | None:intergenic | 35.0% | |
| ! | TGAAATTGTGGGTCTTGTAT+TGG | + | chr5_2:47134834-47134853 | Msa0772780:intron | 35.0% |
| ! | GAAATTGTGGGTCTTGTATT+GGG | + | chr5_2:47134835-47134854 | Msa0772780:intron | 35.0% |
| AACTGTTCGATTAAGATTGG+AGG | + | chr5_2:47135110-47135129 | Msa0772780:intron | 35.0% | |
| ! | CAAAATTTTTGACCGTACAC+AGG | + | chr5_2:47135151-47135170 | Msa0772780:intron | 35.0% |
| AATTAGGGAAAAGATGCAAG+TGG | + | chr5_2:47135234-47135253 | Msa0772780:CDS | 35.0% | |
| TATTGTCACTCACTTGCAAA+TGG | - | chr5_2:47135288-47135307 | None:intergenic | 35.0% | |
| TTGATCTTGAGCCATATACA+AGG | - | chr5_2:47135490-47135509 | None:intergenic | 35.0% | |
| ! | AGGAAATGAGAAACGGTTTT+TGG | - | chr5_2:47133893-47133912 | None:intergenic | 35.0% |
| GTTGTTGAGGAAATGAGAAA+CGG | - | chr5_2:47133900-47133919 | None:intergenic | 35.0% | |
| TGATGACTTAGTTCATAGCT+TGG | + | chr5_2:47133961-47133980 | Msa0772780:CDS | 35.0% | |
| ! | ACAATGAAGGTGATGATGAT+AGG | + | chr5_2:47134388-47134407 | Msa0772780:CDS | 35.0% |
| ! | ACAAGCTAAGAGCTTTAGTT+TGG | + | chr5_2:47134482-47134501 | Msa0772780:CDS | 35.0% |
| AGTCATGGAAATTCAAAGAG+TGG | + | chr5_2:47134516-47134535 | Msa0772780:CDS | 35.0% | |
| GTTGAAGTGCATCAACAAAT+CGG | - | chr5_2:47134662-47134681 | None:intergenic | 35.0% | |
| ! | TGAAATTGTGGGTCTTGTAT+TGG | + | chr5_2:47134834-47134853 | Msa0772780:intron | 35.0% |
| ! | GAAATTGTGGGTCTTGTATT+GGG | + | chr5_2:47134835-47134854 | Msa0772780:intron | 35.0% |
| AACTGTTCGATTAAGATTGG+AGG | + | chr5_2:47135110-47135129 | Msa0772780:intron | 35.0% | |
| ! | CAAAATTTTTGACCGTACAC+AGG | + | chr5_2:47135151-47135170 | Msa0772780:intron | 35.0% |
| AATTAGGGAAAAGATGCAAG+TGG | + | chr5_2:47135234-47135253 | Msa0772780:CDS | 35.0% | |
| TATTGTCACTCACTTGCAAA+TGG | - | chr5_2:47135288-47135307 | None:intergenic | 35.0% | |
| TTGATCTTGAGCCATATACA+AGG | - | chr5_2:47135490-47135509 | None:intergenic | 35.0% | |
| !!! | AGAAACGGTTTTTGGAACAG+AGG | - | chr5_2:47133885-47133904 | None:intergenic | 40.0% |
| TGGTTTGAACAACGTTGTTG+AGG | - | chr5_2:47133913-47133932 | None:intergenic | 40.0% | |
| !! | AAGTTTCTGAGACATGTCGT+TGG | - | chr5_2:47133933-47133952 | None:intergenic | 40.0% |
| ! | TAAGGAGGAGTATGGAAAGA+GGG | - | chr5_2:47134027-47134046 | None:intergenic | 40.0% |
| ! | TTAAGGAGGAGTATGGAAAG+AGG | - | chr5_2:47134028-47134047 | None:intergenic | 40.0% |
| TCCATACTCCTCCTTAATGA+TGG | + | chr5_2:47134031-47134050 | Msa0772780:CDS | 40.0% | |
| ACCATCATTAAGGAGGAGTA+TGG | - | chr5_2:47134035-47134054 | None:intergenic | 40.0% | |
| GTGTTACAGAAGAGTAATGG+TGG | + | chr5_2:47134414-47134433 | Msa0772780:CDS | 40.0% | |
| TTACAGAAGAGTAATGGTGG+AGG | + | chr5_2:47134417-47134436 | Msa0772780:CDS | 40.0% | |
| ! | TACAGAAGAGTAATGGTGGA+GGG | + | chr5_2:47134418-47134437 | Msa0772780:CDS | 40.0% |
| !! | TAATGGTGGAGGGGTATTTA+TGG | + | chr5_2:47134428-47134447 | Msa0772780:CDS | 40.0% |
| !! | AATGGTGGAGGGGTATTTAT+GGG | + | chr5_2:47134429-47134448 | Msa0772780:CDS | 40.0% |
| GGAAATTCAAAGAGTGGTGA+TGG | + | chr5_2:47134522-47134541 | Msa0772780:CDS | 40.0% | |
| AATCTGGATTACCTGCAGTT+AGG | + | chr5_2:47134868-47134887 | Msa0772780:intron | 40.0% | |
| ACCTGCAGTTAGGAAATATG+TGG | + | chr5_2:47134878-47134897 | Msa0772780:intron | 40.0% | |
| TCCACATATTTCCTAACTGC+AGG | - | chr5_2:47134882-47134901 | None:intergenic | 40.0% | |
| GTTGTAAGATGCAGATCAGA+TGG | - | chr5_2:47134990-47135009 | None:intergenic | 40.0% | |
| GAATCCCACTCTTGTGTATA+GGG | + | chr5_2:47135027-47135046 | Msa0772780:intron | 40.0% | |
| TGATCCCTATACACAAGAGT+GGG | - | chr5_2:47135034-47135053 | None:intergenic | 40.0% | |
| TTGATCCCTATACACAAGAG+TGG | - | chr5_2:47135035-47135054 | None:intergenic | 40.0% | |
| AGCCACTCCTAAGCAAATTA+GGG | + | chr5_2:47135219-47135238 | Msa0772780:CDS | 40.0% | |
| !! | TTCCCTAATTTGCTTAGGAG+TGG | - | chr5_2:47135224-47135243 | None:intergenic | 40.0% |
| CGTATTAACCATGGATGGTT+TGG | - | chr5_2:47135325-47135344 | None:intergenic | 40.0% | |
| ATTCCCAGTTTCGTCAATTC+AGG | + | chr5_2:47135449-47135468 | Msa0772780:CDS | 40.0% | |
| AAGCCATGGAAGAAACAGTA+TGG | + | chr5_2:47135608-47135627 | Msa0772780:CDS | 40.0% | |
| ! | CATCCATACTGTTTCTTCCA+TGG | - | chr5_2:47135614-47135633 | None:intergenic | 40.0% |
| AAGATGAGCAATCAGATTGC+AGG | + | chr5_2:47135637-47135656 | Msa0772780:CDS | 40.0% | |
| AGCAATCAGATTGCAGGAAT+TGG | + | chr5_2:47135643-47135662 | Msa0772780:CDS | 40.0% | |
| CAGGAATTGGAAAAGTGATC+AGG | + | chr5_2:47135656-47135675 | Msa0772780:CDS | 40.0% | |
| CAGCACTCAGCAAAATTTAG+AGG | - | chr5_2:47135715-47135734 | None:intergenic | 40.0% | |
| ACAGTTACATGCAACTGTAC+TGG | - | chr5_2:47135962-47135981 | None:intergenic | 40.0% | |
| !!! | AGAAACGGTTTTTGGAACAG+AGG | - | chr5_2:47133885-47133904 | None:intergenic | 40.0% |
| TGGTTTGAACAACGTTGTTG+AGG | - | chr5_2:47133913-47133932 | None:intergenic | 40.0% | |
| !! | AAGTTTCTGAGACATGTCGT+TGG | - | chr5_2:47133933-47133952 | None:intergenic | 40.0% |
| ! | TAAGGAGGAGTATGGAAAGA+GGG | - | chr5_2:47134027-47134046 | None:intergenic | 40.0% |
| ! | TTAAGGAGGAGTATGGAAAG+AGG | - | chr5_2:47134028-47134047 | None:intergenic | 40.0% |
| TCCATACTCCTCCTTAATGA+TGG | + | chr5_2:47134031-47134050 | Msa0772780:CDS | 40.0% | |
| ACCATCATTAAGGAGGAGTA+TGG | - | chr5_2:47134035-47134054 | None:intergenic | 40.0% | |
| GTGTTACAGAAGAGTAATGG+TGG | + | chr5_2:47134414-47134433 | Msa0772780:CDS | 40.0% | |
| TTACAGAAGAGTAATGGTGG+AGG | + | chr5_2:47134417-47134436 | Msa0772780:CDS | 40.0% | |
| ! | TACAGAAGAGTAATGGTGGA+GGG | + | chr5_2:47134418-47134437 | Msa0772780:CDS | 40.0% |
| !! | TAATGGTGGAGGGGTATTTA+TGG | + | chr5_2:47134428-47134447 | Msa0772780:CDS | 40.0% |
| !! | AATGGTGGAGGGGTATTTAT+GGG | + | chr5_2:47134429-47134448 | Msa0772780:CDS | 40.0% |
| GGAAATTCAAAGAGTGGTGA+TGG | + | chr5_2:47134522-47134541 | Msa0772780:CDS | 40.0% | |
| AATCTGGATTACCTGCAGTT+AGG | + | chr5_2:47134868-47134887 | Msa0772780:intron | 40.0% | |
| ACCTGCAGTTAGGAAATATG+TGG | + | chr5_2:47134878-47134897 | Msa0772780:intron | 40.0% | |
| TCCACATATTTCCTAACTGC+AGG | - | chr5_2:47134882-47134901 | None:intergenic | 40.0% | |
| GTTGTAAGATGCAGATCAGA+TGG | - | chr5_2:47134990-47135009 | None:intergenic | 40.0% | |
| GAATCCCACTCTTGTGTATA+GGG | + | chr5_2:47135027-47135046 | Msa0772780:intron | 40.0% | |
| TGATCCCTATACACAAGAGT+GGG | - | chr5_2:47135034-47135053 | None:intergenic | 40.0% | |
| TTGATCCCTATACACAAGAG+TGG | - | chr5_2:47135035-47135054 | None:intergenic | 40.0% | |
| AGCCACTCCTAAGCAAATTA+GGG | + | chr5_2:47135219-47135238 | Msa0772780:CDS | 40.0% | |
| !! | TTCCCTAATTTGCTTAGGAG+TGG | - | chr5_2:47135224-47135243 | None:intergenic | 40.0% |
| CGTATTAACCATGGATGGTT+TGG | - | chr5_2:47135325-47135344 | None:intergenic | 40.0% | |
| ATTCCCAGTTTCGTCAATTC+AGG | + | chr5_2:47135449-47135468 | Msa0772780:CDS | 40.0% | |
| AAGCCATGGAAGAAACAGTA+TGG | + | chr5_2:47135608-47135627 | Msa0772780:CDS | 40.0% | |
| ! | CATCCATACTGTTTCTTCCA+TGG | - | chr5_2:47135614-47135633 | None:intergenic | 40.0% |
| AAGATGAGCAATCAGATTGC+AGG | + | chr5_2:47135637-47135656 | Msa0772780:CDS | 40.0% | |
| AGCAATCAGATTGCAGGAAT+TGG | + | chr5_2:47135643-47135662 | Msa0772780:CDS | 40.0% | |
| CAGGAATTGGAAAAGTGATC+AGG | + | chr5_2:47135656-47135675 | Msa0772780:CDS | 40.0% | |
| CAGCACTCAGCAAAATTTAG+AGG | - | chr5_2:47135715-47135734 | None:intergenic | 40.0% | |
| ACAGTTACATGCAACTGTAC+TGG | - | chr5_2:47135962-47135981 | None:intergenic | 40.0% | |
| ! | ACAGAAGAGTAATGGTGGAG+GGG | + | chr5_2:47134419-47134438 | Msa0772780:CDS | 45.0% |
| ! | TTGGTGTCTGAAGTGAGTCA+TGG | + | chr5_2:47134501-47134520 | Msa0772780:CDS | 45.0% |
| !! | AAGAGTGGTGATGGTAGTTC+TGG | + | chr5_2:47134531-47134550 | Msa0772780:CDS | 45.0% |
| AGCAGAGTTCCAGGAAACAA+AGG | + | chr5_2:47134610-47134629 | Msa0772780:CDS | 45.0% | |
| AGAGTTCCAGGAAACAAAGG+AGG | + | chr5_2:47134613-47134632 | Msa0772780:CDS | 45.0% | |
| GTTGATGCACTTCAACAGCT+TGG | + | chr5_2:47134666-47134685 | Msa0772780:CDS | 45.0% | |
| ! | ATTGTGGGTCTTGTATTGGG+TGG | + | chr5_2:47134838-47134857 | Msa0772780:intron | 45.0% |
| ! | TTGTGGGTCTTGTATTGGGT+GGG | + | chr5_2:47134839-47134858 | Msa0772780:intron | 45.0% |
| AAGATGCAGATCAGATGGCT+TGG | - | chr5_2:47134985-47135004 | None:intergenic | 45.0% | |
| ACAACTGAGACAACCACTAC+AGG | + | chr5_2:47135005-47135024 | Msa0772780:intron | 45.0% | |
| GGAATCCCACTCTTGTGTAT+AGG | + | chr5_2:47135026-47135045 | Msa0772780:intron | 45.0% | |
| CAGCCACTCCTAAGCAAATT+AGG | + | chr5_2:47135218-47135237 | Msa0772780:CDS | 45.0% | |
| AGGGAAAAGATGCAAGTGGA+TGG | + | chr5_2:47135238-47135257 | Msa0772780:CDS | 45.0% | |
| CTCAAACTCCAAACCATCCA+TGG | + | chr5_2:47135314-47135333 | Msa0772780:intron | 45.0% | |
| CCTCCTGAATTGACGAAACT+GGG | - | chr5_2:47135455-47135474 | None:intergenic | 45.0% | |
| ! | TCAGAGTCTGTTTCTCCACA+GGG | + | chr5_2:47135540-47135559 | Msa0772780:CDS | 45.0% |
| GTTCAAGGTCTTTCAAGCCA+TGG | + | chr5_2:47135594-47135613 | Msa0772780:CDS | 45.0% | |
| ! | ACAGAAGAGTAATGGTGGAG+GGG | + | chr5_2:47134419-47134438 | Msa0772780:CDS | 45.0% |
| ! | TTGGTGTCTGAAGTGAGTCA+TGG | + | chr5_2:47134501-47134520 | Msa0772780:CDS | 45.0% |
| !! | AAGAGTGGTGATGGTAGTTC+TGG | + | chr5_2:47134531-47134550 | Msa0772780:CDS | 45.0% |
| AGCAGAGTTCCAGGAAACAA+AGG | + | chr5_2:47134610-47134629 | Msa0772780:CDS | 45.0% | |
| AGAGTTCCAGGAAACAAAGG+AGG | + | chr5_2:47134613-47134632 | Msa0772780:CDS | 45.0% | |
| GTTGATGCACTTCAACAGCT+TGG | + | chr5_2:47134666-47134685 | Msa0772780:CDS | 45.0% | |
| ! | ATTGTGGGTCTTGTATTGGG+TGG | + | chr5_2:47134838-47134857 | Msa0772780:intron | 45.0% |
| ! | TTGTGGGTCTTGTATTGGGT+GGG | + | chr5_2:47134839-47134858 | Msa0772780:intron | 45.0% |
| AAGATGCAGATCAGATGGCT+TGG | - | chr5_2:47134985-47135004 | None:intergenic | 45.0% | |
| ACAACTGAGACAACCACTAC+AGG | + | chr5_2:47135005-47135024 | Msa0772780:intron | 45.0% | |
| GGAATCCCACTCTTGTGTAT+AGG | + | chr5_2:47135026-47135045 | Msa0772780:intron | 45.0% | |
| CAGCCACTCCTAAGCAAATT+AGG | + | chr5_2:47135218-47135237 | Msa0772780:CDS | 45.0% | |
| AGGGAAAAGATGCAAGTGGA+TGG | + | chr5_2:47135238-47135257 | Msa0772780:CDS | 45.0% | |
| CTCAAACTCCAAACCATCCA+TGG | + | chr5_2:47135314-47135333 | Msa0772780:intron | 45.0% | |
| CCTCCTGAATTGACGAAACT+GGG | - | chr5_2:47135455-47135474 | None:intergenic | 45.0% | |
| ! | TCAGAGTCTGTTTCTCCACA+GGG | + | chr5_2:47135540-47135559 | Msa0772780:CDS | 45.0% |
| GTTCAAGGTCTTTCAAGCCA+TGG | + | chr5_2:47135594-47135613 | Msa0772780:CDS | 45.0% | |
| !!! | ATAAAAAAAAATGTTTTTTT+TGG | + | chr5_2:47134361-47134380 | Msa0772780:intron | 5.0% |
| !!! | ATAAAAAAAAATGTTTTTTT+TGG | + | chr5_2:47134361-47134380 | Msa0772780:intron | 5.0% |
| GGATGAGTTCAGCTCAGCTA+TGG | + | chr5_2:47134240-47134259 | Msa0772780:CDS | 50.0% | |
| GAACTCTGCTGCAAAGGTTG+CGG | - | chr5_2:47134600-47134619 | None:intergenic | 50.0% | |
| AACCTTTGCAGCAGAGTTCC+AGG | + | chr5_2:47134601-47134620 | Msa0772780:CDS | 50.0% | |
| TTCCTGGAACTCTGCTGCAA+AGG | - | chr5_2:47134606-47134625 | None:intergenic | 50.0% | |
| GATGCACTTCAACAGCTTGG+TGG | + | chr5_2:47134669-47134688 | Msa0772780:CDS | 50.0% | |
| ! | TGTGGGTCTTGTATTGGGTG+GGG | + | chr5_2:47134840-47134859 | Msa0772780:intron | 50.0% |
| CAAGAGTGGGATTCCTGTAG+TGG | - | chr5_2:47135021-47135040 | None:intergenic | 50.0% | |
| TGACCGTACACAGGCTATGT+AGG | + | chr5_2:47135160-47135179 | Msa0772780:intron | 50.0% | |
| GACCGTACACAGGCTATGTA+GGG | + | chr5_2:47135161-47135180 | Msa0772780:intron | 50.0% | |
| CACCCTACATAGCCTGTGTA+CGG | - | chr5_2:47135166-47135185 | None:intergenic | 50.0% | |
| AGGGTGTGTATGAGCCTAAC+TGG | + | chr5_2:47135180-47135199 | Msa0772780:intron | 50.0% | |
| CCCAGTTTCGTCAATTCAGG+AGG | + | chr5_2:47135452-47135471 | Msa0772780:CDS | 50.0% | |
| GCCTCCTGAATTGACGAAAC+TGG | - | chr5_2:47135456-47135475 | None:intergenic | 50.0% | |
| ! | CTCAGAGTCTGTTTCTCCAC+AGG | + | chr5_2:47135539-47135558 | Msa0772780:CDS | 50.0% |
| CCAAGGAGAAGAGGAGTAAG+AGG | - | chr5_2:47135567-47135586 | None:intergenic | 50.0% | |
| CCTCTTACTCCTCTTCTCCT+TGG | + | chr5_2:47135564-47135583 | Msa0772780:CDS | 50.0% | |
| CTTACTCCTCTTCTCCTTGG+TGG | + | chr5_2:47135567-47135586 | Msa0772780:CDS | 50.0% | |
| ACAGATCCACCAAGGAGAAG+AGG | - | chr5_2:47135576-47135595 | None:intergenic | 50.0% | |
| ! | CTCCTTGGTGGATCTGTTCA+AGG | + | chr5_2:47135579-47135598 | Msa0772780:CDS | 50.0% |
| GACCTTGAACAGATCCACCA+AGG | - | chr5_2:47135584-47135603 | None:intergenic | 50.0% | |
| GGATGAGTTCAGCTCAGCTA+TGG | + | chr5_2:47134240-47134259 | Msa0772780:CDS | 50.0% | |
| GAACTCTGCTGCAAAGGTTG+CGG | - | chr5_2:47134600-47134619 | None:intergenic | 50.0% | |
| AACCTTTGCAGCAGAGTTCC+AGG | + | chr5_2:47134601-47134620 | Msa0772780:CDS | 50.0% | |
| TTCCTGGAACTCTGCTGCAA+AGG | - | chr5_2:47134606-47134625 | None:intergenic | 50.0% | |
| GATGCACTTCAACAGCTTGG+TGG | + | chr5_2:47134669-47134688 | Msa0772780:CDS | 50.0% | |
| ! | TGTGGGTCTTGTATTGGGTG+GGG | + | chr5_2:47134840-47134859 | Msa0772780:intron | 50.0% |
| CAAGAGTGGGATTCCTGTAG+TGG | - | chr5_2:47135021-47135040 | None:intergenic | 50.0% | |
| TGACCGTACACAGGCTATGT+AGG | + | chr5_2:47135160-47135179 | Msa0772780:intron | 50.0% | |
| GACCGTACACAGGCTATGTA+GGG | + | chr5_2:47135161-47135180 | Msa0772780:intron | 50.0% | |
| CACCCTACATAGCCTGTGTA+CGG | - | chr5_2:47135166-47135185 | None:intergenic | 50.0% | |
| AGGGTGTGTATGAGCCTAAC+TGG | + | chr5_2:47135180-47135199 | Msa0772780:intron | 50.0% | |
| CCCAGTTTCGTCAATTCAGG+AGG | + | chr5_2:47135452-47135471 | Msa0772780:CDS | 50.0% | |
| GCCTCCTGAATTGACGAAAC+TGG | - | chr5_2:47135456-47135475 | None:intergenic | 50.0% | |
| ! | CTCAGAGTCTGTTTCTCCAC+AGG | + | chr5_2:47135539-47135558 | Msa0772780:CDS | 50.0% |
| CCAAGGAGAAGAGGAGTAAG+AGG | - | chr5_2:47135567-47135586 | None:intergenic | 50.0% | |
| CCTCTTACTCCTCTTCTCCT+TGG | + | chr5_2:47135564-47135583 | Msa0772780:CDS | 50.0% | |
| CTTACTCCTCTTCTCCTTGG+TGG | + | chr5_2:47135567-47135586 | Msa0772780:CDS | 50.0% | |
| ACAGATCCACCAAGGAGAAG+AGG | - | chr5_2:47135576-47135595 | None:intergenic | 50.0% | |
| ! | CTCCTTGGTGGATCTGTTCA+AGG | + | chr5_2:47135579-47135598 | Msa0772780:CDS | 50.0% |
| GACCTTGAACAGATCCACCA+AGG | - | chr5_2:47135584-47135603 | None:intergenic | 50.0% | |
| ! | CCAGCACCTCCTTTGTTTCC+TGG | - | chr5_2:47134622-47134641 | None:intergenic | 55.0% |
| ! | CCAGGAAACAAAGGAGGTGC+TGG | + | chr5_2:47134619-47134638 | Msa0772780:CDS | 55.0% |
| !! | ACAAAGGAGGTGCTGGTCGT+CGG | + | chr5_2:47134626-47134645 | Msa0772780:CDS | 55.0% |
| ! | CAACAGCTTGGTGGAGCACA+TGG | + | chr5_2:47134678-47134697 | Msa0772780:CDS | 55.0% |
| ! | GTGGGTCTTGTATTGGGTGG+GGG | + | chr5_2:47134841-47134860 | Msa0772780:intron | 55.0% |
| ! | TGGGTCTTGTATTGGGTGGG+GGG | + | chr5_2:47134842-47134861 | Msa0772780:intron | 55.0% |
| AGAGGAGTAAGAGGACCCTG+TGG | - | chr5_2:47135558-47135577 | None:intergenic | 55.0% | |
| ! | CCAGCACCTCCTTTGTTTCC+TGG | - | chr5_2:47134622-47134641 | None:intergenic | 55.0% |
| ! | CCAGGAAACAAAGGAGGTGC+TGG | + | chr5_2:47134619-47134638 | Msa0772780:CDS | 55.0% |
| !! | ACAAAGGAGGTGCTGGTCGT+CGG | + | chr5_2:47134626-47134645 | Msa0772780:CDS | 55.0% |
| ! | CAACAGCTTGGTGGAGCACA+TGG | + | chr5_2:47134678-47134697 | Msa0772780:CDS | 55.0% |
| ! | GTGGGTCTTGTATTGGGTGG+GGG | + | chr5_2:47134841-47134860 | Msa0772780:intron | 55.0% |
| ! | TGGGTCTTGTATTGGGTGGG+GGG | + | chr5_2:47134842-47134861 | Msa0772780:intron | 55.0% |
| AGAGGAGTAAGAGGACCCTG+TGG | - | chr5_2:47135558-47135577 | None:intergenic | 55.0% | |
| CTCTGCTGCAAAGGTTGCGG+CGG | - | chr5_2:47134597-47134616 | None:intergenic | 60.0% | |
| ATTGGGTGGGGGGAGCAATC+TGG | + | chr5_2:47134852-47134871 | Msa0772780:intron | 60.0% | |
| CTCTGCTGCAAAGGTTGCGG+CGG | - | chr5_2:47134597-47134616 | None:intergenic | 60.0% | |
| ATTGGGTGGGGGGAGCAATC+TGG | + | chr5_2:47134852-47134871 | Msa0772780:intron | 60.0% | |
| TGCAAAGGTTGCGGCGGCTG+AGG | - | chr5_2:47134591-47134610 | None:intergenic | 65.0% | |
| TGCAAAGGTTGCGGCGGCTG+AGG | - | chr5_2:47134591-47134610 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 47133824 | 47135988 | 47133824 | ID=Msa0772780;Name=Msa0772780 |
| chr5_2 | mRNA | 47133824 | 47135988 | 47133824 | ID=Msa0772780-mRNA-1;Parent=Msa0772780;Name=Msa0772780-mRNA-1;_AED=0.07;_eAED=0.07;_QI=21|0.75|0.8|1|1|1|5|287|333 |
| chr5_2 | exon | 47133824 | 47134052 | 47133824 | ID=Msa0772780-mRNA-1:exon:14125;Parent=Msa0772780-mRNA-1 |
| chr5_2 | exon | 47134153 | 47134280 | 47134153 | ID=Msa0772780-mRNA-1:exon:14126;Parent=Msa0772780-mRNA-1 |
| chr5_2 | exon | 47134387 | 47134699 | 47134387 | ID=Msa0772780-mRNA-1:exon:14127;Parent=Msa0772780-mRNA-1 |
| chr5_2 | exon | 47135218 | 47135294 | 47135218 | ID=Msa0772780-mRNA-1:exon:14128;Parent=Msa0772780-mRNA-1 |
| chr5_2 | exon | 47135426 | 47135988 | 47135426 | ID=Msa0772780-mRNA-1:exon:14129;Parent=Msa0772780-mRNA-1 |
| chr5_2 | five_prime_UTR | 47133824 | 47133844 | 47133824 | ID=Msa0772780-mRNA-1:five_prime_utr;Parent=Msa0772780-mRNA-1 |
| chr5_2 | CDS | 47133845 | 47134052 | 47133845 | ID=Msa0772780-mRNA-1:cds;Parent=Msa0772780-mRNA-1 |
| chr5_2 | CDS | 47134153 | 47134280 | 47134153 | ID=Msa0772780-mRNA-1:cds;Parent=Msa0772780-mRNA-1 |
| chr5_2 | CDS | 47134387 | 47134699 | 47134387 | ID=Msa0772780-mRNA-1:cds;Parent=Msa0772780-mRNA-1 |
| chr5_2 | CDS | 47135218 | 47135294 | 47135218 | ID=Msa0772780-mRNA-1:cds;Parent=Msa0772780-mRNA-1 |
| chr5_2 | CDS | 47135426 | 47135701 | 47135426 | ID=Msa0772780-mRNA-1:cds;Parent=Msa0772780-mRNA-1 |
| chr5_2 | three_prime_UTR | 47135702 | 47135988 | 47135702 | ID=Msa0772780-mRNA-1:three_prime_utr;Parent=Msa0772780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
