Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798280 | RHN54067.1 | 94.753 | 324 | 17 | 0 | 2 | 325 | 24 | 347 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798280 | sp|F4JRB0|HHO5_ARATH | 38.482 | 369 | 159 | 12 | 6 | 329 | 12 | 357 | 3.76e-54 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798280 | A0A396HTM4 | 94.753 | 324 | 17 | 0 | 2 | 325 | 24 | 347 | 0.0 | 567 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0798280 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0715370 | Msa0798280 | 0.942417 | 7.454957e-102 | -8.615850e-47 |
| Msa0772780 | Msa0798280 | 0.917303 | 6.256380e-86 | -8.615850e-47 |
| Msa0798280 | Msa0836790 | 0.857487 | 1.578269e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798280 | MtrunA17_Chr5g0402631 | 94.753 | 324 | 17 | 0 | 2 | 325 | 24 | 347 | 0.0 | 567 |
| Msa0798280 | MtrunA17_Chr4g0045361 | 38.537 | 410 | 152 | 12 | 5 | 324 | 8 | 407 | 1.59e-65 | 212 |
| Msa0798280 | MtrunA17_Chr4g0062921 | 36.482 | 307 | 136 | 10 | 9 | 263 | 6 | 305 | 5.90e-40 | 145 |
| Msa0798280 | MtrunA17_Chr1g0198601 | 33.333 | 330 | 143 | 14 | 34 | 293 | 2 | 324 | 1.38e-35 | 132 |
| Msa0798280 | MtrunA17_Chr5g0422621 | 36.398 | 261 | 102 | 8 | 39 | 253 | 17 | 259 | 2.04e-35 | 132 |
| Msa0798280 | MtrunA17_Chr2g0291021 | 55.714 | 70 | 30 | 1 | 192 | 261 | 49 | 117 | 2.56e-14 | 72.8 |
| Msa0798280 | MtrunA17_Chr7g0254981 | 63.636 | 55 | 20 | 0 | 192 | 246 | 50 | 104 | 2.83e-14 | 72.0 |
| Msa0798280 | MtrunA17_Chr5g0417521 | 60.000 | 55 | 22 | 0 | 192 | 246 | 15 | 69 | 4.81e-14 | 72.0 |
| Msa0798280 | MtrunA17_Chr3g0137101 | 38.400 | 125 | 65 | 5 | 191 | 306 | 197 | 318 | 1.28e-13 | 71.6 |
| Msa0798280 | MtrunA17_Chr1g0197171 | 58.621 | 58 | 24 | 0 | 189 | 246 | 41 | 98 | 2.06e-13 | 69.7 |
| Msa0798280 | MtrunA17_Chr1g0175081 | 50.877 | 57 | 28 | 0 | 190 | 246 | 20 | 76 | 2.57e-13 | 65.5 |
| Msa0798280 | MtrunA17_Chr4g0042451 | 42.697 | 89 | 50 | 1 | 192 | 279 | 17 | 105 | 2.58e-13 | 69.7 |
| Msa0798280 | MtrunA17_Chr1g0161431 | 48.649 | 74 | 37 | 1 | 189 | 262 | 197 | 269 | 3.55e-13 | 70.5 |
| Msa0798280 | MtrunA17_Chr2g0294911 | 50.000 | 72 | 35 | 1 | 189 | 260 | 208 | 278 | 3.55e-13 | 70.5 |
| Msa0798280 | MtrunA17_Chr4g0067981 | 55.738 | 61 | 26 | 1 | 191 | 251 | 214 | 273 | 4.28e-13 | 70.1 |
| Msa0798280 | MtrunA17_Chr2g0290991 | 60.000 | 55 | 22 | 0 | 192 | 246 | 39 | 93 | 7.01e-13 | 68.6 |
| Msa0798280 | MtrunA17_Chr1g0190301 | 53.731 | 67 | 30 | 1 | 189 | 255 | 172 | 237 | 7.05e-13 | 68.9 |
| Msa0798280 | MtrunA17_Chr5g0400241 | 42.222 | 90 | 46 | 3 | 163 | 251 | 285 | 369 | 1.08e-12 | 68.9 |
| Msa0798280 | MtrunA17_Chr8g0356501 | 60.000 | 55 | 22 | 0 | 192 | 246 | 37 | 91 | 1.21e-12 | 67.8 |
| Msa0798280 | MtrunA17_Chr7g0255711 | 51.667 | 60 | 28 | 1 | 191 | 250 | 90 | 148 | 1.63e-12 | 67.0 |
| Msa0798280 | MtrunA17_Chr2g0310011 | 60.000 | 55 | 22 | 0 | 192 | 246 | 35 | 89 | 1.72e-12 | 67.4 |
| Msa0798280 | MtrunA17_Chr7g0261911 | 52.239 | 67 | 31 | 1 | 189 | 255 | 259 | 324 | 1.89e-12 | 67.8 |
| Msa0798280 | MtrunA17_Chr1g0149841 | 49.231 | 65 | 32 | 1 | 187 | 251 | 186 | 249 | 2.07e-12 | 67.8 |
| Msa0798280 | MtrunA17_Chr3g0109981 | 46.988 | 83 | 40 | 1 | 163 | 245 | 249 | 327 | 3.16e-12 | 67.0 |
| Msa0798280 | MtrunA17_Chr2g0321461 | 38.679 | 106 | 50 | 2 | 141 | 246 | 9 | 99 | 4.39e-12 | 66.6 |
| Msa0798280 | MtrunA17_Chr7g0274471 | 59.259 | 54 | 22 | 0 | 192 | 245 | 218 | 271 | 4.57e-12 | 66.6 |
| Msa0798280 | MtrunA17_Chr5g0409731 | 47.222 | 72 | 36 | 1 | 192 | 261 | 25 | 96 | 4.78e-12 | 65.9 |
| Msa0798280 | MtrunA17_Chr2g0304841 | 50.000 | 62 | 30 | 1 | 189 | 250 | 210 | 270 | 4.88e-12 | 67.0 |
| Msa0798280 | MtrunA17_Chr6g0479431 | 37.815 | 119 | 57 | 3 | 158 | 270 | 175 | 282 | 5.76e-12 | 65.9 |
| Msa0798280 | MtrunA17_Chr1g0149831 | 47.619 | 63 | 29 | 1 | 189 | 251 | 125 | 183 | 7.60e-12 | 64.3 |
| Msa0798280 | MtrunA17_Chr1g0175091 | 54.386 | 57 | 26 | 0 | 190 | 246 | 256 | 312 | 7.64e-12 | 65.9 |
| Msa0798280 | MtrunA17_Chr6g0461641 | 52.727 | 55 | 26 | 0 | 192 | 246 | 42 | 96 | 1.25e-11 | 65.1 |
| Msa0798280 | MtrunA17_Chr4g0031961 | 45.312 | 64 | 34 | 1 | 188 | 251 | 127 | 189 | 1.77e-11 | 64.3 |
| Msa0798280 | MtrunA17_Chr5g0410741 | 31.061 | 132 | 78 | 2 | 153 | 284 | 184 | 302 | 2.30e-11 | 64.3 |
| Msa0798280 | MtrunA17_Chr8g0366281 | 50.820 | 61 | 30 | 0 | 185 | 245 | 166 | 226 | 3.81e-11 | 63.5 |
| Msa0798280 | MtrunA17_Chr7g0258551 | 53.571 | 56 | 26 | 0 | 190 | 245 | 210 | 265 | 4.24e-11 | 63.5 |
| Msa0798280 | MtrunA17_Chr1g0210911 | 57.143 | 49 | 21 | 0 | 197 | 245 | 27 | 75 | 9.00e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798280 | AT4G37180.1 | 39.227 | 362 | 159 | 11 | 6 | 329 | 12 | 350 | 8.91e-58 | 191 |
| Msa0798280 | AT4G37180.2 | 38.482 | 369 | 159 | 12 | 6 | 329 | 12 | 357 | 3.82e-55 | 184 |
| Msa0798280 | AT4G37180.3 | 42.857 | 266 | 106 | 8 | 6 | 242 | 12 | 260 | 4.42e-49 | 166 |
| Msa0798280 | AT2G03500.1 | 37.762 | 286 | 134 | 8 | 9 | 250 | 6 | 291 | 1.04e-42 | 153 |
| Msa0798280 | AT1G68670.1 | 35.231 | 281 | 120 | 7 | 31 | 256 | 6 | 279 | 4.91e-39 | 141 |
| Msa0798280 | AT1G25550.1 | 34.909 | 275 | 118 | 7 | 31 | 256 | 10 | 272 | 1.55e-38 | 140 |
| Msa0798280 | AT1G49560.1 | 55.385 | 130 | 38 | 4 | 180 | 290 | 171 | 299 | 4.98e-34 | 127 |
| Msa0798280 | AT1G25550.2 | 33.716 | 261 | 113 | 6 | 31 | 242 | 10 | 259 | 3.31e-32 | 121 |
| Msa0798280 | AT1G13300.1 | 34.483 | 261 | 100 | 8 | 31 | 250 | 9 | 239 | 1.79e-31 | 121 |
| Msa0798280 | AT1G49560.2 | 69.444 | 72 | 13 | 1 | 180 | 242 | 171 | 242 | 3.05e-25 | 102 |
| Msa0798280 | AT3G25790.1 | 80.000 | 55 | 11 | 0 | 196 | 250 | 200 | 254 | 1.40e-24 | 102 |
| Msa0798280 | AT3G25790.2 | 78.723 | 47 | 10 | 0 | 196 | 242 | 200 | 246 | 1.83e-19 | 86.7 |
| Msa0798280 | AT2G01060.1 | 59.375 | 64 | 25 | 1 | 192 | 255 | 15 | 77 | 3.04e-14 | 72.4 |
| Msa0798280 | AT2G20400.2 | 44.828 | 87 | 47 | 1 | 192 | 278 | 231 | 316 | 3.79e-14 | 73.2 |
| Msa0798280 | AT4G13640.1 | 61.818 | 55 | 21 | 0 | 192 | 246 | 37 | 91 | 1.50e-13 | 70.5 |
| Msa0798280 | AT2G20400.1 | 46.512 | 86 | 43 | 2 | 192 | 277 | 231 | 313 | 1.52e-13 | 71.2 |
| Msa0798280 | AT4G13640.2 | 61.818 | 55 | 21 | 0 | 192 | 246 | 37 | 91 | 1.55e-13 | 70.5 |
| Msa0798280 | AT2G06020.1 | 50.000 | 64 | 32 | 0 | 183 | 246 | 77 | 140 | 1.82e-13 | 70.5 |
| Msa0798280 | AT3G24120.1 | 60.000 | 55 | 22 | 0 | 192 | 246 | 41 | 95 | 3.13e-13 | 69.7 |
| Msa0798280 | AT1G67710.3 | 52.239 | 67 | 32 | 0 | 185 | 251 | 112 | 178 | 3.36e-13 | 70.5 |
| Msa0798280 | AT1G67710.2 | 52.239 | 67 | 32 | 0 | 185 | 251 | 121 | 187 | 3.39e-13 | 70.5 |
| Msa0798280 | AT3G24120.2 | 60.000 | 55 | 22 | 0 | 192 | 246 | 41 | 95 | 3.54e-13 | 69.3 |
| Msa0798280 | AT1G67710.1 | 52.239 | 67 | 32 | 0 | 185 | 251 | 186 | 252 | 3.82e-13 | 70.5 |
| Msa0798280 | AT5G05090.1 | 51.667 | 60 | 28 | 1 | 191 | 250 | 80 | 138 | 6.90e-13 | 68.2 |
| Msa0798280 | AT3G10760.1 | 51.667 | 60 | 28 | 1 | 191 | 250 | 104 | 162 | 9.07e-13 | 68.6 |
| Msa0798280 | AT3G12730.1 | 58.182 | 55 | 23 | 0 | 192 | 246 | 23 | 77 | 9.46e-13 | 67.4 |
| Msa0798280 | AT5G59570.2 | 46.875 | 64 | 33 | 1 | 188 | 251 | 137 | 199 | 1.05e-12 | 68.2 |
| Msa0798280 | AT5G59570.1 | 46.875 | 64 | 33 | 1 | 188 | 251 | 137 | 199 | 1.05e-12 | 68.2 |
| Msa0798280 | AT3G16857.3 | 54.098 | 61 | 27 | 1 | 191 | 251 | 166 | 225 | 1.16e-12 | 69.3 |
| Msa0798280 | AT3G16857.2 | 54.098 | 61 | 27 | 1 | 191 | 251 | 236 | 295 | 1.32e-12 | 68.9 |
| Msa0798280 | AT1G69580.1 | 52.727 | 55 | 26 | 0 | 192 | 246 | 34 | 88 | 1.48e-12 | 68.2 |
| Msa0798280 | AT3G16857.1 | 54.098 | 61 | 27 | 1 | 191 | 251 | 236 | 295 | 1.49e-12 | 68.9 |
| Msa0798280 | AT1G69580.2 | 52.727 | 55 | 26 | 0 | 192 | 246 | 34 | 88 | 1.60e-12 | 67.8 |
| Msa0798280 | AT5G58080.1 | 49.206 | 63 | 31 | 1 | 189 | 251 | 191 | 252 | 1.64e-12 | 68.9 |
| Msa0798280 | AT2G40970.1 | 51.667 | 60 | 28 | 1 | 191 | 250 | 104 | 162 | 2.27e-12 | 66.6 |
| Msa0798280 | AT3G04030.1 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 2.46e-12 | 67.8 |
| Msa0798280 | AT3G04030.3 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 2.96e-12 | 67.4 |
| Msa0798280 | AT5G06800.3 | 54.545 | 55 | 25 | 0 | 192 | 246 | 192 | 246 | 3.73e-12 | 66.2 |
| Msa0798280 | AT1G79430.2 | 60.000 | 55 | 22 | 0 | 192 | 246 | 34 | 88 | 4.55e-12 | 66.6 |
| Msa0798280 | AT3G13040.3 | 50.000 | 64 | 32 | 0 | 183 | 246 | 232 | 295 | 5.85e-12 | 66.6 |
| Msa0798280 | AT3G13040.1 | 50.000 | 64 | 32 | 0 | 183 | 246 | 232 | 295 | 5.85e-12 | 66.6 |
| Msa0798280 | AT3G13040.2 | 50.000 | 64 | 32 | 0 | 183 | 246 | 232 | 295 | 5.85e-12 | 66.6 |
| Msa0798280 | AT5G45580.1 | 56.364 | 55 | 24 | 0 | 192 | 246 | 7 | 61 | 5.88e-12 | 65.5 |
| Msa0798280 | AT5G18240.2 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 6.20e-12 | 66.6 |
| Msa0798280 | AT5G18240.3 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 6.20e-12 | 66.6 |
| Msa0798280 | AT5G45580.2 | 56.364 | 55 | 24 | 0 | 192 | 246 | 23 | 77 | 6.37e-12 | 65.5 |
| Msa0798280 | AT3G04450.3 | 50.820 | 61 | 30 | 0 | 185 | 245 | 231 | 291 | 6.58e-12 | 65.9 |
| Msa0798280 | AT5G18240.5 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 6.69e-12 | 66.2 |
| Msa0798280 | AT5G18240.1 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 6.73e-12 | 66.2 |
| Msa0798280 | AT5G18240.4 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 6.73e-12 | 66.2 |
| Msa0798280 | AT4G17695.1 | 41.237 | 97 | 47 | 2 | 177 | 272 | 148 | 235 | 7.03e-12 | 65.9 |
| Msa0798280 | AT5G06800.1 | 54.545 | 55 | 25 | 0 | 192 | 246 | 192 | 246 | 9.72e-12 | 65.9 |
| Msa0798280 | AT5G06800.2 | 54.545 | 55 | 25 | 0 | 192 | 246 | 192 | 246 | 1.04e-11 | 65.9 |
| Msa0798280 | AT1G32240.2 | 38.776 | 98 | 51 | 1 | 182 | 279 | 203 | 291 | 1.14e-11 | 65.5 |
| Msa0798280 | AT3G04450.1 | 50.820 | 61 | 30 | 0 | 185 | 245 | 231 | 291 | 1.18e-11 | 65.9 |
| Msa0798280 | AT3G04450.4 | 50.820 | 61 | 30 | 0 | 185 | 245 | 191 | 251 | 1.28e-11 | 65.5 |
| Msa0798280 | AT3G04450.2 | 50.820 | 61 | 30 | 0 | 185 | 245 | 191 | 251 | 1.28e-11 | 65.5 |
| Msa0798280 | AT1G32240.1 | 38.776 | 98 | 51 | 1 | 182 | 279 | 203 | 291 | 1.29e-11 | 65.5 |
| Msa0798280 | AT2G01760.3 | 50.000 | 62 | 30 | 1 | 190 | 251 | 133 | 193 | 1.64e-11 | 64.7 |
| Msa0798280 | AT2G01760.1 | 50.000 | 62 | 30 | 1 | 190 | 251 | 198 | 258 | 1.73e-11 | 65.1 |
| Msa0798280 | AT2G01760.2 | 50.000 | 62 | 30 | 1 | 190 | 251 | 226 | 286 | 1.76e-11 | 65.1 |
| Msa0798280 | AT3G46640.2 | 47.541 | 61 | 31 | 1 | 191 | 251 | 143 | 202 | 1.94e-11 | 64.7 |
| Msa0798280 | AT3G46640.1 | 47.541 | 61 | 31 | 1 | 191 | 251 | 143 | 202 | 1.94e-11 | 64.7 |
| Msa0798280 | AT4G31920.1 | 40.789 | 76 | 44 | 1 | 189 | 264 | 180 | 254 | 2.04e-11 | 65.5 |
| Msa0798280 | AT3G46640.3 | 47.541 | 61 | 31 | 1 | 191 | 251 | 143 | 202 | 2.51e-11 | 64.3 |
| Msa0798280 | AT5G29000.4 | 52.632 | 57 | 27 | 0 | 189 | 245 | 228 | 284 | 2.92e-11 | 63.9 |
| Msa0798280 | AT4G28610.1 | 55.556 | 54 | 24 | 0 | 192 | 245 | 225 | 278 | 3.57e-11 | 64.3 |
| Msa0798280 | AT5G16560.1 | 51.562 | 64 | 31 | 0 | 182 | 245 | 209 | 272 | 3.82e-11 | 64.3 |
| Msa0798280 | AT2G25180.1 | 46.377 | 69 | 36 | 1 | 191 | 259 | 194 | 261 | 4.54e-11 | 64.3 |
| Msa0798280 | AT5G29000.1 | 52.632 | 57 | 27 | 0 | 189 | 245 | 185 | 241 | 5.38e-11 | 63.5 |
| Msa0798280 | AT5G29000.3 | 52.632 | 57 | 27 | 0 | 189 | 245 | 185 | 241 | 5.38e-11 | 63.5 |
| Msa0798280 | AT5G29000.2 | 52.632 | 57 | 27 | 0 | 189 | 245 | 228 | 284 | 5.58e-11 | 63.5 |
| Msa0798280 | AT4G04605.1 | 53.571 | 56 | 26 | 0 | 190 | 245 | 12 | 67 | 6.76e-11 | 61.6 |
| Msa0798280 | AT5G42630.2 | 53.333 | 60 | 28 | 0 | 186 | 245 | 99 | 158 | 9.27e-11 | 61.2 |
Find 77 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGGTGGAGGGGTATTTA+TGG | 0.172244 | 5_3:-10960921 | Msa0798280:CDS |
| CAGCCACTCCTAAGCAAATT+AGG | 0.199099 | 5_3:-10960130 | Msa0798280:CDS |
| AAAATTAGTTACCATCATTA+AGG | 0.265474 | 5_3:+10961307 | None:intergenic |
| CCAGCACCTCCTTTGTTTCC+TGG | 0.269810 | 5_3:+10960730 | None:intergenic |
| AAAAGTTGGGTTGATGAAAA+TGG | 0.274484 | 5_3:-10961168 | Msa0798280:CDS |
| ATTCCCAGTTTCGTCAATTC+AGG | 0.284606 | 5_3:-10959899 | Msa0798280:CDS |
| CAGCACTCAGCAAAATTTAG+AGG | 0.286569 | 5_3:+10959636 | None:intergenic |
| AGCAATCAGATTGCAGGAAT+TGG | 0.302511 | 5_3:-10959705 | Msa0798280:CDS |
| CTCCTTGGTGGATCTGTTCA+AGG | 0.312173 | 5_3:-10959769 | Msa0798280:CDS |
| GCCTCCTGAATTGACGAAAC+TGG | 0.313674 | 5_3:+10959895 | None:intergenic |
| AATGGTGGAGGGGTATTTAT+GGG | 0.317942 | 5_3:-10960920 | Msa0798280:CDS |
| AAGAGTGGTGATGGTAGTTC+TGG | 0.342533 | 5_3:-10960818 | Msa0798280:CDS |
| AACCTTTGCAGCAGAGTTCC+AGG | 0.347695 | 5_3:-10960748 | Msa0798280:CDS |
| ACAAGCTAAGAGCTTTAGTT+TGG | 0.377820 | 5_3:-10960867 | Msa0798280:CDS |
| ACTGTGATAATAAGAAGAAT+TGG | 0.383175 | 5_3:-10961130 | Msa0798280:CDS |
| AGCCACTCCTAAGCAAATTA+GGG | 0.392450 | 5_3:-10960129 | Msa0798280:CDS |
| CTCAGAGTCTGTTTCTCCAC+AGG | 0.393005 | 5_3:-10959809 | Msa0798280:CDS |
| TGCAAAGGTTGCGGCGGCTG+AGG | 0.403383 | 5_3:+10960761 | None:intergenic |
| CATCCATACTGTTTCTTCCA+TGG | 0.409764 | 5_3:+10959737 | None:intergenic |
| TTGTGATTATGCAGAAGTAT+AGG | 0.413901 | 5_3:-10959936 | Msa0798280:intron |
| CCTCTTACTCCTCTTCTCCT+TGG | 0.417068 | 5_3:-10959784 | Msa0798280:CDS |
| TCTTTCATATCTGATATTGA+TGG | 0.420948 | 5_3:-10959427 | Msa0798280:three_prime_UTR |
| AAGATGAGCAATCAGATTGC+AGG | 0.425444 | 5_3:-10959711 | Msa0798280:CDS |
| TAAGGAGGAGTATGGAAAGA+GGG | 0.427844 | 5_3:+10961325 | None:intergenic |
| TAATAAGTTAGCCTTGTATA+TGG | 0.434530 | 5_3:-10959872 | Msa0798280:CDS |
| ACCATCATTAAGGAGGAGTA+TGG | 0.434982 | 5_3:+10961317 | None:intergenic |
| AAGCCATGGAAGAAACAGTA+TGG | 0.440126 | 5_3:-10959740 | Msa0798280:CDS |
| CTTACTCCTCTTCTCCTTGG+TGG | 0.445651 | 5_3:-10959781 | Msa0798280:CDS |
| TATTGTCACTCACTTGCAAA+TGG | 0.459590 | 5_3:+10960063 | None:intergenic |
| TCCATACTCCTCCTTAATGA+TGG | 0.469852 | 5_3:-10961318 | Msa0798280:intron |
| CCAAGGAGAAGAGGAGTAAG+AGG | 0.473664 | 5_3:+10959784 | None:intergenic |
| TTCCCTAATTTGCTTAGGAG+TGG | 0.487933 | 5_3:+10960127 | None:intergenic |
| TTAAGGAGGAGTATGGAAAG+AGG | 0.491286 | 5_3:+10961324 | None:intergenic |
| CAGGAATTGGAAAAGTGATC+AGG | 0.500799 | 5_3:-10959692 | Msa0798280:CDS |
| ATTTAATGAAAATCTGTTGA+AGG | 0.503957 | 5_3:-10960897 | Msa0798280:CDS |
| TTCCTGGAACTCTGCTGCAA+AGG | 0.504800 | 5_3:+10960746 | None:intergenic |
| TGATGACTTAGTTCATAGCT+TGG | 0.508826 | 5_3:-10961388 | Msa0798280:CDS |
| GTTGAAGTGCATCAACAAAT+CGG | 0.519431 | 5_3:+10960690 | None:intergenic |
| CCTCCTGAATTGACGAAACT+GGG | 0.520520 | 5_3:+10959896 | None:intergenic |
| ACAGTTACATGCAACTGTAC+TGG | 0.524248 | 5_3:+10959389 | None:intergenic |
| CCAGGAAACAAAGGAGGTGC+TGG | 0.526510 | 5_3:-10960730 | Msa0798280:CDS |
| GTTCAAGGTCTTTCAAGCCA+TGG | 0.531430 | 5_3:-10959754 | Msa0798280:CDS |
| GAACTCTGCTGCAAAGGTTG+CGG | 0.536482 | 5_3:+10960752 | None:intergenic |
| AGGGAAAAGATGCAAGTGGA+TGG | 0.538779 | 5_3:-10960110 | Msa0798280:CDS |
| TCAGAGTCTGTTTCTCCACA+GGG | 0.539092 | 5_3:-10959808 | Msa0798280:CDS |
| GGATGAGTTCAGCTCAGCTA+TGG | 0.541177 | 5_3:-10961109 | Msa0798280:CDS |
| GGAAATTCAAAGAGTGGTGA+TGG | 0.543852 | 5_3:-10960827 | Msa0798280:CDS |
| GTTGTTGAGGAAATGAGAAA+CGG | 0.545414 | 5_3:+10961452 | None:intergenic |
| TAATGAAAATCTGTTGAAGG+AGG | 0.547757 | 5_3:-10960894 | Msa0798280:CDS |
| CTCTGCTGCAAAGGTTGCGG+CGG | 0.547761 | 5_3:+10960755 | None:intergenic |
| TGGTTTGAACAACGTTGTTG+AGG | 0.552246 | 5_3:+10961439 | None:intergenic |
| TGTGAAGAAGATACATCAAA+GGG | 0.552624 | 5_3:-10959838 | Msa0798280:CDS |
| TTCATATCTGATATTGATGG+AGG | 0.558322 | 5_3:-10959424 | Msa0798280:three_prime_UTR |
| CCCAGTTTCGTCAATTCAGG+AGG | 0.558843 | 5_3:-10959896 | Msa0798280:CDS |
| ACAAAGGAGGTGCTGGTCGT+CGG | 0.559002 | 5_3:-10960723 | Msa0798280:CDS |
| CAACAGCTTGGTGGAGCACA+TGG | 0.565013 | 5_3:-10960671 | Msa0798280:intron |
| GTTGATGCACTTCAACAGCT+TGG | 0.565906 | 5_3:-10960683 | Msa0798280:CDS |
| ACAATGAAGGTGATGATGGT+AGG | 0.566672 | 5_3:-10960961 | Msa0798280:CDS |
| ACAGAAGAGTAATGGTGGAG+GGG | 0.566775 | 5_3:-10960930 | Msa0798280:CDS |
| ACAGATCCACCAAGGAGAAG+AGG | 0.569987 | 5_3:+10959775 | None:intergenic |
| GTGTTACAGAAGAGTAATGG+TGG | 0.573520 | 5_3:-10960935 | Msa0798280:CDS |
| ATGTGAAGAAGATACATCAA+AGG | 0.582691 | 5_3:-10959839 | Msa0798280:CDS |
| GATGCACTTCAACAGCTTGG+TGG | 0.583631 | 5_3:-10960680 | Msa0798280:CDS |
| ATTAGTTACCATCATTAAGG+AGG | 0.585189 | 5_3:+10961310 | None:intergenic |
| AGCAGAGTTCCAGGAAACAA+AGG | 0.588997 | 5_3:-10960739 | Msa0798280:CDS |
| TAGAACAATGAAGGTGATGA+TGG | 0.591530 | 5_3:-10960965 | Msa0798280:CDS |
| ATTGTGTTACAGAAGAGTAA+TGG | 0.592672 | 5_3:-10960938 | Msa0798280:CDS |
| TTACAGAAGAGTAATGGTGG+AGG | 0.599891 | 5_3:-10960932 | Msa0798280:CDS |
| TACAGAAGAGTAATGGTGGA+GGG | 0.606656 | 5_3:-10960931 | Msa0798280:CDS |
| AATTAGGGAAAAGATGCAAG+TGG | 0.615575 | 5_3:-10960114 | Msa0798280:CDS |
| TTGATCTTGAGCCATATACA+AGG | 0.616538 | 5_3:+10959861 | None:intergenic |
| AGTCATGGAAATTCAAAGAG+TGG | 0.617489 | 5_3:-10960833 | Msa0798280:CDS |
| TTGGTGTCTGAAGTGAGTCA+TGG | 0.626831 | 5_3:-10960848 | Msa0798280:CDS |
| AAGTTTCTGAGACATGTCGT+TGG | 0.646359 | 5_3:+10961419 | None:intergenic |
| AGAGGAGTAAGAGGACCCTG+TGG | 0.650364 | 5_3:+10959793 | None:intergenic |
| AGAGTTCCAGGAAACAAAGG+AGG | 0.672803 | 5_3:-10960736 | Msa0798280:CDS |
| GACCTTGAACAGATCCACCA+AGG | 0.687479 | 5_3:+10959767 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCTAATTAATTTTTG+TGG | - | chr5_3:10959617-10959636 | Msa0798280:three_prime_UTR | 10.0% |
| !! | AAAATTAACAAAAAAGAAAA+AGG | + | chr5_3:10959666-10959685 | None:intergenic | 10.0% |
| !! | AAAAATCACAATTAAAAAAA+AGG | + | chr5_3:10959877-10959896 | None:intergenic | 10.0% |
| !!! | AATTTTCTAATTAATTTTTG+TGG | - | chr5_3:10959617-10959636 | Msa0798280:three_prime_UTR | 10.0% |
| !! | AAAATTAACAAAAAAGAAAA+AGG | + | chr5_3:10959666-10959685 | None:intergenic | 10.0% |
| !! | AAAAATCACAATTAAAAAAA+AGG | + | chr5_3:10959877-10959896 | None:intergenic | 10.0% |
| !! | AAAAAGAAAAAACATCATCA+TGG | - | chr5_3:10959384-10959403 | Msa0798280:three_prime_UTR | 20.0% |
| !! | AAAATTAGTTACCATCATTA+AGG | + | chr5_3:10959603-10959622 | None:intergenic | 20.0% |
| !! | AATGATGAAAAAGAAAAAGT+TGG | - | chr5_3:10959725-10959744 | Msa0798280:CDS | 20.0% |
| !! | ATGATGAAAAAGAAAAAGTT+GGG | - | chr5_3:10959726-10959745 | Msa0798280:CDS | 20.0% |
| !! | ATTTAATGAAAATCTGTTGA+AGG | - | chr5_3:10960010-10960029 | Msa0798280:intron | 20.0% |
| !!! | TCTTAGTGTATATTTTGTTT+TGG | - | chr5_3:10960335-10960354 | Msa0798280:intron | 20.0% |
| !!! | TGTATATTTTGTTTTGGATT+TGG | - | chr5_3:10960341-10960360 | Msa0798280:intron | 20.0% |
| !!! | AGTTCTAAGTTATAACAAAT+AGG | + | chr5_3:10960652-10960671 | None:intergenic | 20.0% |
| !! | TATGAAAAACAAAATCACTA+TGG | + | chr5_3:10961402-10961421 | None:intergenic | 20.0% |
| !!! | TGTTTTTCATAATTATGCTA+TGG | - | chr5_3:10961411-10961430 | Msa0798280:CDS | 20.0% |
| !! | AAAAAGAAAAAACATCATCA+TGG | - | chr5_3:10959384-10959403 | Msa0798280:three_prime_UTR | 20.0% |
| !! | AAAATTAGTTACCATCATTA+AGG | + | chr5_3:10959603-10959622 | None:intergenic | 20.0% |
| !! | AATGATGAAAAAGAAAAAGT+TGG | - | chr5_3:10959725-10959744 | Msa0798280:CDS | 20.0% |
| !! | ATGATGAAAAAGAAAAAGTT+GGG | - | chr5_3:10959726-10959745 | Msa0798280:CDS | 20.0% |
| !! | ATTTAATGAAAATCTGTTGA+AGG | - | chr5_3:10960010-10960029 | Msa0798280:intron | 20.0% |
| !!! | TCTTAGTGTATATTTTGTTT+TGG | - | chr5_3:10960335-10960354 | Msa0798280:intron | 20.0% |
| !!! | TGTATATTTTGTTTTGGATT+TGG | - | chr5_3:10960341-10960360 | Msa0798280:intron | 20.0% |
| !!! | AGTTCTAAGTTATAACAAAT+AGG | + | chr5_3:10960652-10960671 | None:intergenic | 20.0% |
| !! | TATGAAAAACAAAATCACTA+TGG | + | chr5_3:10961402-10961421 | None:intergenic | 20.0% |
| !!! | TGTTTTTCATAATTATGCTA+TGG | - | chr5_3:10961411-10961430 | Msa0798280:CDS | 20.0% |
| !!! | TTGTGGTATTTCTTGTTTTT+TGG | - | chr5_3:10959634-10959653 | Msa0798280:three_prime_UTR | 25.0% |
| ! | ACTGTGATAATAAGAAGAAT+TGG | - | chr5_3:10959777-10959796 | Msa0798280:CDS | 25.0% |
| !! | ATGGACTAATGAAACAAAAA+CGG | - | chr5_3:10959817-10959836 | Msa0798280:CDS | 25.0% |
| !!! | TTTTTTTGGTAGAACAATGA+AGG | - | chr5_3:10959933-10959952 | Msa0798280:intron | 25.0% |
| !! | CAATTTGGAATTGAAATTGT+GGG | - | chr5_3:10960381-10960400 | Msa0798280:intron | 25.0% |
| ! | AGATTACATGACATGTTATT+AGG | - | chr5_3:10960612-10960631 | Msa0798280:intron | 25.0% |
| ! | GATTACATGACATGTTATTA+GGG | - | chr5_3:10960613-10960632 | Msa0798280:intron | 25.0% |
| !! | ATGTTATTAGGGATTAGTAT+AGG | - | chr5_3:10960624-10960643 | Msa0798280:intron | 25.0% |
| ! | TACAAAAAAGAAAACCAGTT+AGG | + | chr5_3:10960756-10960775 | None:intergenic | 25.0% |
| ! | ACTAATAATCGTATTAACCA+TGG | + | chr5_3:10960893-10960912 | None:intergenic | 25.0% |
| !!! | TAATAAGTTAGCCTTGTATA+TGG | - | chr5_3:10961035-10961054 | Msa0798280:intron | 25.0% |
| ! | TCTTTCATATCTGATATTGA+TGG | - | chr5_3:10961480-10961499 | Msa0798280:CDS | 25.0% |
| !!! | TTGTGGTATTTCTTGTTTTT+TGG | - | chr5_3:10959634-10959653 | Msa0798280:three_prime_UTR | 25.0% |
| ! | ACTGTGATAATAAGAAGAAT+TGG | - | chr5_3:10959777-10959796 | Msa0798280:CDS | 25.0% |
| !! | ATGGACTAATGAAACAAAAA+CGG | - | chr5_3:10959817-10959836 | Msa0798280:CDS | 25.0% |
| !!! | TTTTTTTGGTAGAACAATGA+AGG | - | chr5_3:10959933-10959952 | Msa0798280:intron | 25.0% |
| !! | CAATTTGGAATTGAAATTGT+GGG | - | chr5_3:10960381-10960400 | Msa0798280:intron | 25.0% |
| ! | AGATTACATGACATGTTATT+AGG | - | chr5_3:10960612-10960631 | Msa0798280:intron | 25.0% |
| ! | GATTACATGACATGTTATTA+GGG | - | chr5_3:10960613-10960632 | Msa0798280:intron | 25.0% |
| !! | ATGTTATTAGGGATTAGTAT+AGG | - | chr5_3:10960624-10960643 | Msa0798280:intron | 25.0% |
| ! | TACAAAAAAGAAAACCAGTT+AGG | + | chr5_3:10960756-10960775 | None:intergenic | 25.0% |
| ! | ACTAATAATCGTATTAACCA+TGG | + | chr5_3:10960893-10960912 | None:intergenic | 25.0% |
| !!! | TAATAAGTTAGCCTTGTATA+TGG | - | chr5_3:10961035-10961054 | Msa0798280:intron | 25.0% |
| ! | TCTTTCATATCTGATATTGA+TGG | - | chr5_3:10961480-10961499 | Msa0798280:CDS | 25.0% |
| ATTAGTTACCATCATTAAGG+AGG | + | chr5_3:10959600-10959619 | None:intergenic | 30.0% | |
| !! | AAAAGTTGGGTTGATGAAAA+TGG | - | chr5_3:10959739-10959758 | Msa0798280:CDS | 30.0% |
| ATTGTGTTACAGAAGAGTAA+TGG | - | chr5_3:10959969-10959988 | Msa0798280:intron | 30.0% | |
| TAATGAAAATCTGTTGAAGG+AGG | - | chr5_3:10960013-10960032 | Msa0798280:intron | 30.0% | |
| ! | AGTGTTGCTCTGATTTATTA+TGG | - | chr5_3:10960301-10960320 | Msa0798280:intron | 30.0% |
| GCTCTGATTTATTATGGTAT+AGG | - | chr5_3:10960307-10960326 | Msa0798280:intron | 30.0% | |
| ! | ATAGAGTTGATTCTCCAATT+TGG | - | chr5_3:10960366-10960385 | Msa0798280:intron | 30.0% |
| CCACAATTTCAATTCCAAAT+TGG | + | chr5_3:10960383-10960402 | None:intergenic | 30.0% | |
| ! | CCAATTTGGAATTGAAATTG+TGG | - | chr5_3:10960380-10960399 | Msa0798280:intron | 30.0% |
| AATCAATCTTAGTCGTTGTA+TGG | - | chr5_3:10960472-10960491 | Msa0798280:intron | 30.0% | |
| TAGAACTGTTCGATTAAGAT+TGG | - | chr5_3:10960665-10960684 | Msa0798280:intron | 30.0% | |
| !!! | ATTTTTTGCAATCAGCAAGA+TGG | + | chr5_3:10960697-10960716 | None:intergenic | 30.0% |
| !! | AAAAAATTTTGACCGTACAC+AGG | - | chr5_3:10960710-10960729 | Msa0798280:CDS | 30.0% |
| !!! | ATCTTTTCCCTAATTTGCTT+AGG | + | chr5_3:10960788-10960807 | None:intergenic | 30.0% |
| ATAATCGTATTAACCATGGA+TGG | + | chr5_3:10960889-10960908 | None:intergenic | 30.0% | |
| ! | TTGTGATTATGCAGAAGTAT+AGG | - | chr5_3:10960971-10960990 | Msa0798280:intron | 30.0% |
| ATGTGAAGAAGATACATCAA+AGG | - | chr5_3:10961068-10961087 | Msa0798280:intron | 30.0% | |
| TGTGAAGAAGATACATCAAA+GGG | - | chr5_3:10961069-10961088 | Msa0798280:intron | 30.0% | |
| !!! | ATGGTTATTTTAGACTGTTG+TGG | - | chr5_3:10961430-10961449 | Msa0798280:CDS | 30.0% |
| TTCATATCTGATATTGATGG+AGG | - | chr5_3:10961483-10961502 | Msa0798280:CDS | 30.0% | |
| ATTAGTTACCATCATTAAGG+AGG | + | chr5_3:10959600-10959619 | None:intergenic | 30.0% | |
| !! | AAAAGTTGGGTTGATGAAAA+TGG | - | chr5_3:10959739-10959758 | Msa0798280:CDS | 30.0% |
| ATTGTGTTACAGAAGAGTAA+TGG | - | chr5_3:10959969-10959988 | Msa0798280:intron | 30.0% | |
| TAATGAAAATCTGTTGAAGG+AGG | - | chr5_3:10960013-10960032 | Msa0798280:intron | 30.0% | |
| ! | AGTGTTGCTCTGATTTATTA+TGG | - | chr5_3:10960301-10960320 | Msa0798280:intron | 30.0% |
| GCTCTGATTTATTATGGTAT+AGG | - | chr5_3:10960307-10960326 | Msa0798280:intron | 30.0% | |
| ! | ATAGAGTTGATTCTCCAATT+TGG | - | chr5_3:10960366-10960385 | Msa0798280:intron | 30.0% |
| CCACAATTTCAATTCCAAAT+TGG | + | chr5_3:10960383-10960402 | None:intergenic | 30.0% | |
| ! | CCAATTTGGAATTGAAATTG+TGG | - | chr5_3:10960380-10960399 | Msa0798280:intron | 30.0% |
| AATCAATCTTAGTCGTTGTA+TGG | - | chr5_3:10960472-10960491 | Msa0798280:intron | 30.0% | |
| TAGAACTGTTCGATTAAGAT+TGG | - | chr5_3:10960665-10960684 | Msa0798280:intron | 30.0% | |
| !!! | ATTTTTTGCAATCAGCAAGA+TGG | + | chr5_3:10960697-10960716 | None:intergenic | 30.0% |
| !! | AAAAAATTTTGACCGTACAC+AGG | - | chr5_3:10960710-10960729 | Msa0798280:CDS | 30.0% |
| !!! | ATCTTTTCCCTAATTTGCTT+AGG | + | chr5_3:10960788-10960807 | None:intergenic | 30.0% |
| ATAATCGTATTAACCATGGA+TGG | + | chr5_3:10960889-10960908 | None:intergenic | 30.0% | |
| ! | TTGTGATTATGCAGAAGTAT+AGG | - | chr5_3:10960971-10960990 | Msa0798280:intron | 30.0% |
| ATGTGAAGAAGATACATCAA+AGG | - | chr5_3:10961068-10961087 | Msa0798280:intron | 30.0% | |
| TGTGAAGAAGATACATCAAA+GGG | - | chr5_3:10961069-10961088 | Msa0798280:intron | 30.0% | |
| !!! | ATGGTTATTTTAGACTGTTG+TGG | - | chr5_3:10961430-10961449 | Msa0798280:CDS | 30.0% |
| TTCATATCTGATATTGATGG+AGG | - | chr5_3:10961483-10961502 | Msa0798280:CDS | 30.0% | |
| ! | AGGAAATGAGAAACGGTTTT+TGG | + | chr5_3:10959451-10959470 | None:intergenic | 35.0% |
| GTTGTTGAGGAAATGAGAAA+CGG | + | chr5_3:10959458-10959477 | None:intergenic | 35.0% | |
| TGATGACTTAGTTCATAGCT+TGG | - | chr5_3:10959519-10959538 | Msa0798280:three_prime_UTR | 35.0% | |
| TAGAACAATGAAGGTGATGA+TGG | - | chr5_3:10959942-10959961 | Msa0798280:intron | 35.0% | |
| ! | ACAAGCTAAGAGCTTTAGTT+TGG | - | chr5_3:10960040-10960059 | Msa0798280:intron | 35.0% |
| AGTCATGGAAATTCAAAGAG+TGG | - | chr5_3:10960074-10960093 | Msa0798280:intron | 35.0% | |
| GTTGAAGTGCATCAACAAAT+CGG | + | chr5_3:10960220-10960239 | None:intergenic | 35.0% | |
| ! | TGAAATTGTGGGTCTTGTAT+TGG | - | chr5_3:10960392-10960411 | Msa0798280:intron | 35.0% |
| ! | GAAATTGTGGGTCTTGTATT+GGG | - | chr5_3:10960393-10960412 | Msa0798280:intron | 35.0% |
| AACTGTTCGATTAAGATTGG+AGG | - | chr5_3:10960668-10960687 | Msa0798280:intron | 35.0% | |
| AATTAGGGAAAAGATGCAAG+TGG | - | chr5_3:10960793-10960812 | Msa0798280:CDS | 35.0% | |
| TATTGTCACTCACTTGCAAA+TGG | + | chr5_3:10960847-10960866 | None:intergenic | 35.0% | |
| TTGATCTTGAGCCATATACA+AGG | + | chr5_3:10961049-10961068 | None:intergenic | 35.0% | |
| ! | AGGAAATGAGAAACGGTTTT+TGG | + | chr5_3:10959451-10959470 | None:intergenic | 35.0% |
| GTTGTTGAGGAAATGAGAAA+CGG | + | chr5_3:10959458-10959477 | None:intergenic | 35.0% | |
| TGATGACTTAGTTCATAGCT+TGG | - | chr5_3:10959519-10959538 | Msa0798280:three_prime_UTR | 35.0% | |
| TAGAACAATGAAGGTGATGA+TGG | - | chr5_3:10959942-10959961 | Msa0798280:intron | 35.0% | |
| ! | ACAAGCTAAGAGCTTTAGTT+TGG | - | chr5_3:10960040-10960059 | Msa0798280:intron | 35.0% |
| AGTCATGGAAATTCAAAGAG+TGG | - | chr5_3:10960074-10960093 | Msa0798280:intron | 35.0% | |
| GTTGAAGTGCATCAACAAAT+CGG | + | chr5_3:10960220-10960239 | None:intergenic | 35.0% | |
| ! | TGAAATTGTGGGTCTTGTAT+TGG | - | chr5_3:10960392-10960411 | Msa0798280:intron | 35.0% |
| ! | GAAATTGTGGGTCTTGTATT+GGG | - | chr5_3:10960393-10960412 | Msa0798280:intron | 35.0% |
| AACTGTTCGATTAAGATTGG+AGG | - | chr5_3:10960668-10960687 | Msa0798280:intron | 35.0% | |
| AATTAGGGAAAAGATGCAAG+TGG | - | chr5_3:10960793-10960812 | Msa0798280:CDS | 35.0% | |
| TATTGTCACTCACTTGCAAA+TGG | + | chr5_3:10960847-10960866 | None:intergenic | 35.0% | |
| TTGATCTTGAGCCATATACA+AGG | + | chr5_3:10961049-10961068 | None:intergenic | 35.0% | |
| !!! | AGAAACGGTTTTTGGAACAG+AGG | + | chr5_3:10959443-10959462 | None:intergenic | 40.0% |
| TGGTTTGAACAACGTTGTTG+AGG | + | chr5_3:10959471-10959490 | None:intergenic | 40.0% | |
| !! | AAGTTTCTGAGACATGTCGT+TGG | + | chr5_3:10959491-10959510 | None:intergenic | 40.0% |
| ! | TAAGGAGGAGTATGGAAAGA+GGG | + | chr5_3:10959585-10959604 | None:intergenic | 40.0% |
| ! | TTAAGGAGGAGTATGGAAAG+AGG | + | chr5_3:10959586-10959605 | None:intergenic | 40.0% |
| TCCATACTCCTCCTTAATGA+TGG | - | chr5_3:10959589-10959608 | Msa0798280:three_prime_UTR | 40.0% | |
| ACCATCATTAAGGAGGAGTA+TGG | + | chr5_3:10959593-10959612 | None:intergenic | 40.0% | |
| !! | ACAATGAAGGTGATGATGGT+AGG | - | chr5_3:10959946-10959965 | Msa0798280:intron | 40.0% |
| GTGTTACAGAAGAGTAATGG+TGG | - | chr5_3:10959972-10959991 | Msa0798280:intron | 40.0% | |
| TTACAGAAGAGTAATGGTGG+AGG | - | chr5_3:10959975-10959994 | Msa0798280:intron | 40.0% | |
| ! | TACAGAAGAGTAATGGTGGA+GGG | - | chr5_3:10959976-10959995 | Msa0798280:intron | 40.0% |
| !! | TAATGGTGGAGGGGTATTTA+TGG | - | chr5_3:10959986-10960005 | Msa0798280:intron | 40.0% |
| !! | AATGGTGGAGGGGTATTTAT+GGG | - | chr5_3:10959987-10960006 | Msa0798280:intron | 40.0% |
| GGAAATTCAAAGAGTGGTGA+TGG | - | chr5_3:10960080-10960099 | Msa0798280:CDS | 40.0% | |
| AATCTGGATTACCTGCAGTT+AGG | - | chr5_3:10960426-10960445 | Msa0798280:intron | 40.0% | |
| ACCTGCAGTTAGGAAATATG+TGG | - | chr5_3:10960436-10960455 | Msa0798280:intron | 40.0% | |
| TCCACATATTTCCTAACTGC+AGG | + | chr5_3:10960440-10960459 | None:intergenic | 40.0% | |
| GTTGTAAGATGCAGATCAGA+TGG | + | chr5_3:10960548-10960567 | None:intergenic | 40.0% | |
| GAATCCCACTCTTGTGTATA+GGG | - | chr5_3:10960585-10960604 | Msa0798280:intron | 40.0% | |
| TGATCCCTATACACAAGAGT+GGG | + | chr5_3:10960592-10960611 | None:intergenic | 40.0% | |
| TTGATCCCTATACACAAGAG+TGG | + | chr5_3:10960593-10960612 | None:intergenic | 40.0% | |
| AGCCACTCCTAAGCAAATTA+GGG | - | chr5_3:10960778-10960797 | Msa0798280:CDS | 40.0% | |
| !! | TTCCCTAATTTGCTTAGGAG+TGG | + | chr5_3:10960783-10960802 | None:intergenic | 40.0% |
| CGTATTAACCATGGATGGTT+TGG | + | chr5_3:10960884-10960903 | None:intergenic | 40.0% | |
| ATTCCCAGTTTCGTCAATTC+AGG | - | chr5_3:10961008-10961027 | Msa0798280:intron | 40.0% | |
| AAGCCATGGAAGAAACAGTA+TGG | - | chr5_3:10961167-10961186 | Msa0798280:CDS | 40.0% | |
| ! | CATCCATACTGTTTCTTCCA+TGG | + | chr5_3:10961173-10961192 | None:intergenic | 40.0% |
| AAGATGAGCAATCAGATTGC+AGG | - | chr5_3:10961196-10961215 | Msa0798280:CDS | 40.0% | |
| AGCAATCAGATTGCAGGAAT+TGG | - | chr5_3:10961202-10961221 | Msa0798280:intron | 40.0% | |
| CAGGAATTGGAAAAGTGATC+AGG | - | chr5_3:10961215-10961234 | Msa0798280:intron | 40.0% | |
| CAGCACTCAGCAAAATTTAG+AGG | + | chr5_3:10961274-10961293 | None:intergenic | 40.0% | |
| ACAGTTACATGCAACTGTAC+TGG | + | chr5_3:10961521-10961540 | None:intergenic | 40.0% | |
| !!! | AGAAACGGTTTTTGGAACAG+AGG | + | chr5_3:10959443-10959462 | None:intergenic | 40.0% |
| TGGTTTGAACAACGTTGTTG+AGG | + | chr5_3:10959471-10959490 | None:intergenic | 40.0% | |
| !! | AAGTTTCTGAGACATGTCGT+TGG | + | chr5_3:10959491-10959510 | None:intergenic | 40.0% |
| ! | TAAGGAGGAGTATGGAAAGA+GGG | + | chr5_3:10959585-10959604 | None:intergenic | 40.0% |
| ! | TTAAGGAGGAGTATGGAAAG+AGG | + | chr5_3:10959586-10959605 | None:intergenic | 40.0% |
| TCCATACTCCTCCTTAATGA+TGG | - | chr5_3:10959589-10959608 | Msa0798280:three_prime_UTR | 40.0% | |
| ACCATCATTAAGGAGGAGTA+TGG | + | chr5_3:10959593-10959612 | None:intergenic | 40.0% | |
| !! | ACAATGAAGGTGATGATGGT+AGG | - | chr5_3:10959946-10959965 | Msa0798280:intron | 40.0% |
| GTGTTACAGAAGAGTAATGG+TGG | - | chr5_3:10959972-10959991 | Msa0798280:intron | 40.0% | |
| TTACAGAAGAGTAATGGTGG+AGG | - | chr5_3:10959975-10959994 | Msa0798280:intron | 40.0% | |
| ! | TACAGAAGAGTAATGGTGGA+GGG | - | chr5_3:10959976-10959995 | Msa0798280:intron | 40.0% |
| !! | TAATGGTGGAGGGGTATTTA+TGG | - | chr5_3:10959986-10960005 | Msa0798280:intron | 40.0% |
| !! | AATGGTGGAGGGGTATTTAT+GGG | - | chr5_3:10959987-10960006 | Msa0798280:intron | 40.0% |
| GGAAATTCAAAGAGTGGTGA+TGG | - | chr5_3:10960080-10960099 | Msa0798280:CDS | 40.0% | |
| AATCTGGATTACCTGCAGTT+AGG | - | chr5_3:10960426-10960445 | Msa0798280:intron | 40.0% | |
| ACCTGCAGTTAGGAAATATG+TGG | - | chr5_3:10960436-10960455 | Msa0798280:intron | 40.0% | |
| TCCACATATTTCCTAACTGC+AGG | + | chr5_3:10960440-10960459 | None:intergenic | 40.0% | |
| GTTGTAAGATGCAGATCAGA+TGG | + | chr5_3:10960548-10960567 | None:intergenic | 40.0% | |
| GAATCCCACTCTTGTGTATA+GGG | - | chr5_3:10960585-10960604 | Msa0798280:intron | 40.0% | |
| TGATCCCTATACACAAGAGT+GGG | + | chr5_3:10960592-10960611 | None:intergenic | 40.0% | |
| TTGATCCCTATACACAAGAG+TGG | + | chr5_3:10960593-10960612 | None:intergenic | 40.0% | |
| AGCCACTCCTAAGCAAATTA+GGG | - | chr5_3:10960778-10960797 | Msa0798280:CDS | 40.0% | |
| !! | TTCCCTAATTTGCTTAGGAG+TGG | + | chr5_3:10960783-10960802 | None:intergenic | 40.0% |
| CGTATTAACCATGGATGGTT+TGG | + | chr5_3:10960884-10960903 | None:intergenic | 40.0% | |
| ATTCCCAGTTTCGTCAATTC+AGG | - | chr5_3:10961008-10961027 | Msa0798280:intron | 40.0% | |
| AAGCCATGGAAGAAACAGTA+TGG | - | chr5_3:10961167-10961186 | Msa0798280:CDS | 40.0% | |
| ! | CATCCATACTGTTTCTTCCA+TGG | + | chr5_3:10961173-10961192 | None:intergenic | 40.0% |
| AAGATGAGCAATCAGATTGC+AGG | - | chr5_3:10961196-10961215 | Msa0798280:CDS | 40.0% | |
| AGCAATCAGATTGCAGGAAT+TGG | - | chr5_3:10961202-10961221 | Msa0798280:intron | 40.0% | |
| CAGGAATTGGAAAAGTGATC+AGG | - | chr5_3:10961215-10961234 | Msa0798280:intron | 40.0% | |
| CAGCACTCAGCAAAATTTAG+AGG | + | chr5_3:10961274-10961293 | None:intergenic | 40.0% | |
| ACAGTTACATGCAACTGTAC+TGG | + | chr5_3:10961521-10961540 | None:intergenic | 40.0% | |
| ! | ACAGAAGAGTAATGGTGGAG+GGG | - | chr5_3:10959977-10959996 | Msa0798280:intron | 45.0% |
| ! | TTGGTGTCTGAAGTGAGTCA+TGG | - | chr5_3:10960059-10960078 | Msa0798280:intron | 45.0% |
| !! | AAGAGTGGTGATGGTAGTTC+TGG | - | chr5_3:10960089-10960108 | Msa0798280:CDS | 45.0% |
| AGCAGAGTTCCAGGAAACAA+AGG | - | chr5_3:10960168-10960187 | Msa0798280:intron | 45.0% | |
| AGAGTTCCAGGAAACAAAGG+AGG | - | chr5_3:10960171-10960190 | Msa0798280:intron | 45.0% | |
| GTTGATGCACTTCAACAGCT+TGG | - | chr5_3:10960224-10960243 | Msa0798280:intron | 45.0% | |
| ! | ATTGTGGGTCTTGTATTGGG+TGG | - | chr5_3:10960396-10960415 | Msa0798280:intron | 45.0% |
| ! | TTGTGGGTCTTGTATTGGGT+GGG | - | chr5_3:10960397-10960416 | Msa0798280:intron | 45.0% |
| AAGATGCAGATCAGATGGCT+TGG | + | chr5_3:10960543-10960562 | None:intergenic | 45.0% | |
| ACAACTGAGACAACCACTAC+AGG | - | chr5_3:10960563-10960582 | Msa0798280:intron | 45.0% | |
| GGAATCCCACTCTTGTGTAT+AGG | - | chr5_3:10960584-10960603 | Msa0798280:intron | 45.0% | |
| CAGCCACTCCTAAGCAAATT+AGG | - | chr5_3:10960777-10960796 | Msa0798280:CDS | 45.0% | |
| AGGGAAAAGATGCAAGTGGA+TGG | - | chr5_3:10960797-10960816 | Msa0798280:CDS | 45.0% | |
| CTCAAACTCCAAACCATCCA+TGG | - | chr5_3:10960873-10960892 | Msa0798280:CDS | 45.0% | |
| CCTCCTGAATTGACGAAACT+GGG | + | chr5_3:10961014-10961033 | None:intergenic | 45.0% | |
| ! | TCAGAGTCTGTTTCTCCACA+GGG | - | chr5_3:10961099-10961118 | Msa0798280:CDS | 45.0% |
| GTTCAAGGTCTTTCAAGCCA+TGG | - | chr5_3:10961153-10961172 | Msa0798280:CDS | 45.0% | |
| ! | ACAGAAGAGTAATGGTGGAG+GGG | - | chr5_3:10959977-10959996 | Msa0798280:intron | 45.0% |
| ! | TTGGTGTCTGAAGTGAGTCA+TGG | - | chr5_3:10960059-10960078 | Msa0798280:intron | 45.0% |
| !! | AAGAGTGGTGATGGTAGTTC+TGG | - | chr5_3:10960089-10960108 | Msa0798280:CDS | 45.0% |
| AGCAGAGTTCCAGGAAACAA+AGG | - | chr5_3:10960168-10960187 | Msa0798280:intron | 45.0% | |
| AGAGTTCCAGGAAACAAAGG+AGG | - | chr5_3:10960171-10960190 | Msa0798280:intron | 45.0% | |
| GTTGATGCACTTCAACAGCT+TGG | - | chr5_3:10960224-10960243 | Msa0798280:intron | 45.0% | |
| ! | ATTGTGGGTCTTGTATTGGG+TGG | - | chr5_3:10960396-10960415 | Msa0798280:intron | 45.0% |
| ! | TTGTGGGTCTTGTATTGGGT+GGG | - | chr5_3:10960397-10960416 | Msa0798280:intron | 45.0% |
| AAGATGCAGATCAGATGGCT+TGG | + | chr5_3:10960543-10960562 | None:intergenic | 45.0% | |
| ACAACTGAGACAACCACTAC+AGG | - | chr5_3:10960563-10960582 | Msa0798280:intron | 45.0% | |
| GGAATCCCACTCTTGTGTAT+AGG | - | chr5_3:10960584-10960603 | Msa0798280:intron | 45.0% | |
| CAGCCACTCCTAAGCAAATT+AGG | - | chr5_3:10960777-10960796 | Msa0798280:CDS | 45.0% | |
| AGGGAAAAGATGCAAGTGGA+TGG | - | chr5_3:10960797-10960816 | Msa0798280:CDS | 45.0% | |
| CTCAAACTCCAAACCATCCA+TGG | - | chr5_3:10960873-10960892 | Msa0798280:CDS | 45.0% | |
| CCTCCTGAATTGACGAAACT+GGG | + | chr5_3:10961014-10961033 | None:intergenic | 45.0% | |
| ! | TCAGAGTCTGTTTCTCCACA+GGG | - | chr5_3:10961099-10961118 | Msa0798280:CDS | 45.0% |
| GTTCAAGGTCTTTCAAGCCA+TGG | - | chr5_3:10961153-10961172 | Msa0798280:CDS | 45.0% | |
| !!! | ATAAAAAAAAAATGTTTTTT+TGG | - | chr5_3:10959919-10959938 | Msa0798280:CDS | 5.0% |
| !!! | ATAAAAAAAAAATGTTTTTT+TGG | - | chr5_3:10959919-10959938 | Msa0798280:CDS | 5.0% |
| GGATGAGTTCAGCTCAGCTA+TGG | - | chr5_3:10959798-10959817 | Msa0798280:CDS | 50.0% | |
| GAACTCTGCTGCAAAGGTTG+CGG | + | chr5_3:10960158-10960177 | None:intergenic | 50.0% | |
| AACCTTTGCAGCAGAGTTCC+AGG | - | chr5_3:10960159-10960178 | Msa0798280:intron | 50.0% | |
| TTCCTGGAACTCTGCTGCAA+AGG | + | chr5_3:10960164-10960183 | None:intergenic | 50.0% | |
| GATGCACTTCAACAGCTTGG+TGG | - | chr5_3:10960227-10960246 | Msa0798280:intron | 50.0% | |
| ! | TGTGGGTCTTGTATTGGGTG+GGG | - | chr5_3:10960398-10960417 | Msa0798280:intron | 50.0% |
| CAAGAGTGGGATTCCTGTAG+TGG | + | chr5_3:10960579-10960598 | None:intergenic | 50.0% | |
| TGACCGTACACAGGCTATGT+AGG | - | chr5_3:10960719-10960738 | Msa0798280:CDS | 50.0% | |
| GACCGTACACAGGCTATGTA+GGG | - | chr5_3:10960720-10960739 | Msa0798280:CDS | 50.0% | |
| CACCCTACATAGCCTGTGTA+CGG | + | chr5_3:10960725-10960744 | None:intergenic | 50.0% | |
| AGGGTGTGTATGAGCCTAAC+TGG | - | chr5_3:10960739-10960758 | Msa0798280:CDS | 50.0% | |
| CCCAGTTTCGTCAATTCAGG+AGG | - | chr5_3:10961011-10961030 | Msa0798280:intron | 50.0% | |
| GCCTCCTGAATTGACGAAAC+TGG | + | chr5_3:10961015-10961034 | None:intergenic | 50.0% | |
| ! | CTCAGAGTCTGTTTCTCCAC+AGG | - | chr5_3:10961098-10961117 | Msa0798280:CDS | 50.0% |
| CCAAGGAGAAGAGGAGTAAG+AGG | + | chr5_3:10961126-10961145 | None:intergenic | 50.0% | |
| CCTCTTACTCCTCTTCTCCT+TGG | - | chr5_3:10961123-10961142 | Msa0798280:CDS | 50.0% | |
| CTTACTCCTCTTCTCCTTGG+TGG | - | chr5_3:10961126-10961145 | Msa0798280:CDS | 50.0% | |
| ACAGATCCACCAAGGAGAAG+AGG | + | chr5_3:10961135-10961154 | None:intergenic | 50.0% | |
| ! | CTCCTTGGTGGATCTGTTCA+AGG | - | chr5_3:10961138-10961157 | Msa0798280:CDS | 50.0% |
| GACCTTGAACAGATCCACCA+AGG | + | chr5_3:10961143-10961162 | None:intergenic | 50.0% | |
| GGATGAGTTCAGCTCAGCTA+TGG | - | chr5_3:10959798-10959817 | Msa0798280:CDS | 50.0% | |
| GAACTCTGCTGCAAAGGTTG+CGG | + | chr5_3:10960158-10960177 | None:intergenic | 50.0% | |
| AACCTTTGCAGCAGAGTTCC+AGG | - | chr5_3:10960159-10960178 | Msa0798280:intron | 50.0% | |
| TTCCTGGAACTCTGCTGCAA+AGG | + | chr5_3:10960164-10960183 | None:intergenic | 50.0% | |
| GATGCACTTCAACAGCTTGG+TGG | - | chr5_3:10960227-10960246 | Msa0798280:intron | 50.0% | |
| ! | TGTGGGTCTTGTATTGGGTG+GGG | - | chr5_3:10960398-10960417 | Msa0798280:intron | 50.0% |
| CAAGAGTGGGATTCCTGTAG+TGG | + | chr5_3:10960579-10960598 | None:intergenic | 50.0% | |
| TGACCGTACACAGGCTATGT+AGG | - | chr5_3:10960719-10960738 | Msa0798280:CDS | 50.0% | |
| GACCGTACACAGGCTATGTA+GGG | - | chr5_3:10960720-10960739 | Msa0798280:CDS | 50.0% | |
| CACCCTACATAGCCTGTGTA+CGG | + | chr5_3:10960725-10960744 | None:intergenic | 50.0% | |
| AGGGTGTGTATGAGCCTAAC+TGG | - | chr5_3:10960739-10960758 | Msa0798280:CDS | 50.0% | |
| CCCAGTTTCGTCAATTCAGG+AGG | - | chr5_3:10961011-10961030 | Msa0798280:intron | 50.0% | |
| GCCTCCTGAATTGACGAAAC+TGG | + | chr5_3:10961015-10961034 | None:intergenic | 50.0% | |
| ! | CTCAGAGTCTGTTTCTCCAC+AGG | - | chr5_3:10961098-10961117 | Msa0798280:CDS | 50.0% |
| CCAAGGAGAAGAGGAGTAAG+AGG | + | chr5_3:10961126-10961145 | None:intergenic | 50.0% | |
| CCTCTTACTCCTCTTCTCCT+TGG | - | chr5_3:10961123-10961142 | Msa0798280:CDS | 50.0% | |
| CTTACTCCTCTTCTCCTTGG+TGG | - | chr5_3:10961126-10961145 | Msa0798280:CDS | 50.0% | |
| ACAGATCCACCAAGGAGAAG+AGG | + | chr5_3:10961135-10961154 | None:intergenic | 50.0% | |
| ! | CTCCTTGGTGGATCTGTTCA+AGG | - | chr5_3:10961138-10961157 | Msa0798280:CDS | 50.0% |
| GACCTTGAACAGATCCACCA+AGG | + | chr5_3:10961143-10961162 | None:intergenic | 50.0% | |
| ! | CCAGCACCTCCTTTGTTTCC+TGG | + | chr5_3:10960180-10960199 | None:intergenic | 55.0% |
| ! | CCAGGAAACAAAGGAGGTGC+TGG | - | chr5_3:10960177-10960196 | Msa0798280:intron | 55.0% |
| !! | ACAAAGGAGGTGCTGGTCGT+CGG | - | chr5_3:10960184-10960203 | Msa0798280:intron | 55.0% |
| ! | CAACAGCTTGGTGGAGCACA+TGG | - | chr5_3:10960236-10960255 | Msa0798280:intron | 55.0% |
| ! | GTGGGTCTTGTATTGGGTGG+GGG | - | chr5_3:10960399-10960418 | Msa0798280:intron | 55.0% |
| ! | TGGGTCTTGTATTGGGTGGG+GGG | - | chr5_3:10960400-10960419 | Msa0798280:intron | 55.0% |
| AGAGGAGTAAGAGGACCCTG+TGG | + | chr5_3:10961117-10961136 | None:intergenic | 55.0% | |
| ! | CCAGCACCTCCTTTGTTTCC+TGG | + | chr5_3:10960180-10960199 | None:intergenic | 55.0% |
| ! | CCAGGAAACAAAGGAGGTGC+TGG | - | chr5_3:10960177-10960196 | Msa0798280:intron | 55.0% |
| !! | ACAAAGGAGGTGCTGGTCGT+CGG | - | chr5_3:10960184-10960203 | Msa0798280:intron | 55.0% |
| ! | CAACAGCTTGGTGGAGCACA+TGG | - | chr5_3:10960236-10960255 | Msa0798280:intron | 55.0% |
| ! | GTGGGTCTTGTATTGGGTGG+GGG | - | chr5_3:10960399-10960418 | Msa0798280:intron | 55.0% |
| ! | TGGGTCTTGTATTGGGTGGG+GGG | - | chr5_3:10960400-10960419 | Msa0798280:intron | 55.0% |
| AGAGGAGTAAGAGGACCCTG+TGG | + | chr5_3:10961117-10961136 | None:intergenic | 55.0% | |
| CTCTGCTGCAAAGGTTGCGG+CGG | + | chr5_3:10960155-10960174 | None:intergenic | 60.0% | |
| ATTGGGTGGGGGGAGCAATC+TGG | - | chr5_3:10960410-10960429 | Msa0798280:intron | 60.0% | |
| CTCTGCTGCAAAGGTTGCGG+CGG | + | chr5_3:10960155-10960174 | None:intergenic | 60.0% | |
| ATTGGGTGGGGGGAGCAATC+TGG | - | chr5_3:10960410-10960429 | Msa0798280:intron | 60.0% | |
| TGCAAAGGTTGCGGCGGCTG+AGG | + | chr5_3:10960149-10960168 | None:intergenic | 65.0% | |
| TGCAAAGGTTGCGGCGGCTG+AGG | + | chr5_3:10960149-10960168 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 10959382 | 10961547 | 10959382 | ID=Msa0798280;Name=Msa0798280 |
| chr5_3 | mRNA | 10959382 | 10961547 | 10959382 | ID=Msa0798280-mRNA-1;Parent=Msa0798280;Name=Msa0798280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=21|0.75|0.8|1|1|1|5|287|333 |
| chr5_3 | exon | 10959382 | 10959944 | 10959382 | ID=Msa0798280-mRNA-1:exon:4536;Parent=Msa0798280-mRNA-1 |
| chr5_3 | exon | 10960076 | 10960152 | 10960076 | ID=Msa0798280-mRNA-1:exon:4535;Parent=Msa0798280-mRNA-1 |
| chr5_3 | exon | 10960672 | 10960984 | 10960672 | ID=Msa0798280-mRNA-1:exon:4534;Parent=Msa0798280-mRNA-1 |
| chr5_3 | exon | 10961091 | 10961218 | 10961091 | ID=Msa0798280-mRNA-1:exon:4533;Parent=Msa0798280-mRNA-1 |
| chr5_3 | exon | 10961319 | 10961547 | 10961319 | ID=Msa0798280-mRNA-1:exon:4532;Parent=Msa0798280-mRNA-1 |
| chr5_3 | five_prime_UTR | 10961527 | 10961547 | 10961527 | ID=Msa0798280-mRNA-1:five_prime_utr;Parent=Msa0798280-mRNA-1 |
| chr5_3 | CDS | 10961319 | 10961526 | 10961319 | ID=Msa0798280-mRNA-1:cds;Parent=Msa0798280-mRNA-1 |
| chr5_3 | CDS | 10961091 | 10961218 | 10961091 | ID=Msa0798280-mRNA-1:cds;Parent=Msa0798280-mRNA-1 |
| chr5_3 | CDS | 10960672 | 10960984 | 10960672 | ID=Msa0798280-mRNA-1:cds;Parent=Msa0798280-mRNA-1 |
| chr5_3 | CDS | 10960076 | 10960152 | 10960076 | ID=Msa0798280-mRNA-1:cds;Parent=Msa0798280-mRNA-1 |
| chr5_3 | CDS | 10959669 | 10959944 | 10959669 | ID=Msa0798280-mRNA-1:cds;Parent=Msa0798280-mRNA-1 |
| chr5_3 | three_prime_UTR | 10959382 | 10959668 | 10959382 | ID=Msa0798280-mRNA-1:three_prime_utr;Parent=Msa0798280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
