Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836790 | XP_003611799.1 | 94.753 | 324 | 17 | 0 | 2 | 325 | 3 | 326 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836790 | sp|F4JRB0|HHO5_ARATH | 39.130 | 368 | 158 | 11 | 6 | 329 | 12 | 357 | 4.24e-57 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836790 | A0A396HTM4 | 94.753 | 324 | 17 | 0 | 2 | 325 | 24 | 347 | 0.0 | 570 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0836790 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0715370 | Msa0836790 | 0.889774 | 1.791339e-73 | -8.615850e-47 |
| Msa0772780 | Msa0836790 | 0.890040 | 1.410538e-73 | -8.615850e-47 |
| Msa0798280 | Msa0836790 | 0.857487 | 1.578269e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836790 | MtrunA17_Chr5g0402631 | 94.753 | 324 | 17 | 0 | 2 | 325 | 24 | 347 | 0.0 | 570 |
| Msa0836790 | MtrunA17_Chr4g0045361 | 39.268 | 410 | 149 | 13 | 5 | 324 | 8 | 407 | 3.38e-66 | 214 |
| Msa0836790 | MtrunA17_Chr4g0062921 | 35.831 | 307 | 138 | 9 | 9 | 263 | 6 | 305 | 6.07e-41 | 148 |
| Msa0836790 | MtrunA17_Chr5g0422621 | 34.866 | 261 | 106 | 7 | 39 | 253 | 17 | 259 | 1.59e-36 | 134 |
| Msa0836790 | MtrunA17_Chr1g0198601 | 33.333 | 330 | 143 | 14 | 34 | 293 | 2 | 324 | 7.22e-36 | 133 |
| Msa0836790 | MtrunA17_Chr3g0137101 | 39.200 | 125 | 64 | 5 | 191 | 306 | 197 | 318 | 1.72e-14 | 74.3 |
| Msa0836790 | MtrunA17_Chr2g0291021 | 55.714 | 70 | 30 | 1 | 192 | 261 | 49 | 117 | 2.10e-14 | 73.2 |
| Msa0836790 | MtrunA17_Chr7g0254981 | 63.636 | 55 | 20 | 0 | 192 | 246 | 50 | 104 | 3.14e-14 | 72.0 |
| Msa0836790 | MtrunA17_Chr5g0417521 | 60.000 | 55 | 22 | 0 | 192 | 246 | 15 | 69 | 4.07e-14 | 72.4 |
| Msa0836790 | MtrunA17_Chr1g0197171 | 58.621 | 58 | 24 | 0 | 189 | 246 | 41 | 98 | 1.40e-13 | 70.1 |
| Msa0836790 | MtrunA17_Chr4g0042451 | 42.697 | 89 | 50 | 1 | 192 | 279 | 17 | 105 | 2.22e-13 | 70.1 |
| Msa0836790 | MtrunA17_Chr1g0175081 | 50.877 | 57 | 28 | 0 | 190 | 246 | 20 | 76 | 2.52e-13 | 65.5 |
| Msa0836790 | MtrunA17_Chr1g0161431 | 48.649 | 74 | 37 | 1 | 189 | 262 | 197 | 269 | 2.73e-13 | 70.9 |
| Msa0836790 | MtrunA17_Chr2g0294911 | 50.000 | 72 | 35 | 1 | 189 | 260 | 208 | 278 | 2.99e-13 | 70.5 |
| Msa0836790 | MtrunA17_Chr1g0149841 | 50.769 | 65 | 31 | 1 | 187 | 251 | 186 | 249 | 3.12e-13 | 70.5 |
| Msa0836790 | MtrunA17_Chr4g0067981 | 55.738 | 61 | 26 | 1 | 191 | 251 | 214 | 273 | 3.67e-13 | 70.5 |
| Msa0836790 | MtrunA17_Chr5g0400241 | 42.222 | 90 | 46 | 3 | 163 | 251 | 285 | 369 | 3.85e-13 | 70.1 |
| Msa0836790 | MtrunA17_Chr7g0255711 | 51.667 | 60 | 28 | 1 | 191 | 250 | 90 | 148 | 4.59e-13 | 68.9 |
| Msa0836790 | MtrunA17_Chr1g0190301 | 53.731 | 67 | 30 | 1 | 189 | 255 | 172 | 237 | 5.71e-13 | 69.3 |
| Msa0836790 | MtrunA17_Chr2g0290991 | 60.000 | 55 | 22 | 0 | 192 | 246 | 39 | 93 | 6.82e-13 | 68.6 |
| Msa0836790 | MtrunA17_Chr8g0356501 | 60.000 | 55 | 22 | 0 | 192 | 246 | 37 | 91 | 1.13e-12 | 68.2 |
| Msa0836790 | MtrunA17_Chr7g0261911 | 52.239 | 67 | 31 | 1 | 189 | 255 | 259 | 324 | 1.29e-12 | 68.6 |
| Msa0836790 | MtrunA17_Chr2g0310011 | 60.000 | 55 | 22 | 0 | 192 | 246 | 35 | 89 | 1.69e-12 | 67.4 |
| Msa0836790 | MtrunA17_Chr2g0304841 | 50.000 | 62 | 30 | 1 | 189 | 250 | 210 | 270 | 2.08e-12 | 68.2 |
| Msa0836790 | MtrunA17_Chr3g0109981 | 46.988 | 83 | 40 | 1 | 163 | 245 | 249 | 327 | 2.18e-12 | 67.8 |
| Msa0836790 | MtrunA17_Chr2g0321461 | 38.679 | 106 | 50 | 2 | 141 | 246 | 9 | 99 | 3.37e-12 | 67.0 |
| Msa0836790 | MtrunA17_Chr7g0274471 | 59.259 | 54 | 22 | 0 | 192 | 245 | 218 | 271 | 3.44e-12 | 67.0 |
| Msa0836790 | MtrunA17_Chr5g0409731 | 47.222 | 72 | 36 | 1 | 192 | 261 | 25 | 96 | 5.77e-12 | 65.5 |
| Msa0836790 | MtrunA17_Chr4g0031961 | 45.312 | 64 | 34 | 1 | 188 | 251 | 127 | 189 | 6.13e-12 | 65.5 |
| Msa0836790 | MtrunA17_Chr6g0479431 | 37.815 | 119 | 57 | 3 | 158 | 270 | 175 | 282 | 6.37e-12 | 65.9 |
| Msa0836790 | MtrunA17_Chr1g0175091 | 54.386 | 57 | 26 | 0 | 190 | 246 | 256 | 312 | 6.54e-12 | 66.2 |
| Msa0836790 | MtrunA17_Chr1g0149831 | 47.619 | 63 | 29 | 1 | 189 | 251 | 125 | 183 | 7.04e-12 | 64.3 |
| Msa0836790 | MtrunA17_Chr6g0461641 | 52.727 | 55 | 26 | 0 | 192 | 246 | 42 | 96 | 1.18e-11 | 65.1 |
| Msa0836790 | MtrunA17_Chr1g0210911 | 59.184 | 49 | 20 | 0 | 197 | 245 | 27 | 75 | 1.18e-11 | 65.1 |
| Msa0836790 | MtrunA17_Chr5g0410741 | 31.061 | 132 | 78 | 2 | 153 | 284 | 184 | 302 | 2.06e-11 | 64.7 |
| Msa0836790 | MtrunA17_Chr4g0074411 | 50.000 | 60 | 29 | 1 | 191 | 250 | 200 | 258 | 2.58e-11 | 64.7 |
| Msa0836790 | MtrunA17_Chr7g0258551 | 53.571 | 56 | 26 | 0 | 190 | 245 | 210 | 265 | 3.76e-11 | 63.5 |
| Msa0836790 | MtrunA17_Chr4g0054981 | 43.939 | 66 | 36 | 1 | 186 | 251 | 304 | 368 | 4.30e-11 | 63.9 |
| Msa0836790 | MtrunA17_Chr8g0366281 | 50.820 | 61 | 30 | 0 | 185 | 245 | 166 | 226 | 4.62e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836790 | AT4G37180.1 | 39.889 | 361 | 158 | 10 | 6 | 329 | 12 | 350 | 4.98e-61 | 199 |
| Msa0836790 | AT4G37180.2 | 39.130 | 368 | 158 | 11 | 6 | 329 | 12 | 357 | 4.31e-58 | 192 |
| Msa0836790 | AT4G37180.3 | 43.774 | 265 | 105 | 7 | 6 | 242 | 12 | 260 | 4.42e-52 | 173 |
| Msa0836790 | AT2G03500.1 | 37.762 | 286 | 134 | 8 | 9 | 250 | 6 | 291 | 8.11e-42 | 150 |
| Msa0836790 | AT1G25550.1 | 35.636 | 275 | 116 | 7 | 31 | 256 | 10 | 272 | 3.93e-40 | 144 |
| Msa0836790 | AT1G68670.1 | 35.106 | 282 | 119 | 7 | 31 | 256 | 6 | 279 | 1.00e-39 | 143 |
| Msa0836790 | AT1G49560.1 | 56.154 | 130 | 37 | 4 | 180 | 290 | 171 | 299 | 6.25e-35 | 130 |
| Msa0836790 | AT1G25550.2 | 34.483 | 261 | 111 | 6 | 31 | 242 | 10 | 259 | 8.88e-34 | 125 |
| Msa0836790 | AT1G13300.1 | 85.000 | 60 | 9 | 0 | 191 | 250 | 180 | 239 | 3.90e-29 | 115 |
| Msa0836790 | AT1G49560.2 | 70.833 | 72 | 12 | 1 | 180 | 242 | 171 | 242 | 4.06e-26 | 105 |
| Msa0836790 | AT3G25790.1 | 81.818 | 55 | 10 | 0 | 196 | 250 | 200 | 254 | 1.93e-25 | 105 |
| Msa0836790 | AT3G25790.2 | 80.851 | 47 | 9 | 0 | 196 | 242 | 200 | 246 | 2.43e-20 | 89.4 |
| Msa0836790 | AT2G01060.1 | 54.930 | 71 | 31 | 1 | 185 | 255 | 8 | 77 | 2.44e-14 | 72.8 |
| Msa0836790 | AT2G20400.2 | 44.828 | 87 | 47 | 1 | 192 | 278 | 231 | 316 | 3.09e-14 | 73.6 |
| Msa0836790 | AT2G20400.1 | 46.512 | 86 | 43 | 2 | 192 | 277 | 231 | 313 | 1.28e-13 | 71.6 |
| Msa0836790 | AT2G06020.1 | 50.000 | 64 | 32 | 0 | 183 | 246 | 77 | 140 | 1.48e-13 | 70.5 |
| Msa0836790 | AT4G13640.1 | 61.818 | 55 | 21 | 0 | 192 | 246 | 37 | 91 | 1.74e-13 | 70.5 |
| Msa0836790 | AT4G13640.2 | 61.818 | 55 | 21 | 0 | 192 | 246 | 37 | 91 | 1.76e-13 | 70.5 |
| Msa0836790 | AT5G05090.1 | 51.667 | 60 | 28 | 1 | 191 | 250 | 80 | 138 | 2.17e-13 | 69.7 |
| Msa0836790 | AT3G10760.1 | 51.667 | 60 | 28 | 1 | 191 | 250 | 104 | 162 | 3.37e-13 | 70.1 |
| Msa0836790 | AT3G24120.1 | 60.000 | 55 | 22 | 0 | 192 | 246 | 41 | 95 | 3.54e-13 | 69.3 |
| Msa0836790 | AT3G24120.2 | 60.000 | 55 | 22 | 0 | 192 | 246 | 41 | 95 | 3.74e-13 | 69.3 |
| Msa0836790 | AT5G59570.2 | 46.875 | 64 | 33 | 1 | 188 | 251 | 137 | 199 | 4.11e-13 | 69.3 |
| Msa0836790 | AT5G59570.1 | 46.875 | 64 | 33 | 1 | 188 | 251 | 137 | 199 | 4.11e-13 | 69.3 |
| Msa0836790 | AT2G40970.1 | 51.667 | 60 | 28 | 1 | 191 | 250 | 104 | 162 | 6.88e-13 | 68.2 |
| Msa0836790 | AT3G12730.1 | 58.182 | 55 | 23 | 0 | 192 | 246 | 23 | 77 | 8.76e-13 | 67.4 |
| Msa0836790 | AT3G16857.3 | 54.098 | 61 | 27 | 1 | 191 | 251 | 166 | 225 | 9.47e-13 | 69.3 |
| Msa0836790 | AT3G16857.2 | 54.098 | 61 | 27 | 1 | 191 | 251 | 236 | 295 | 1.09e-12 | 69.3 |
| Msa0836790 | AT3G16857.1 | 54.098 | 61 | 27 | 1 | 191 | 251 | 236 | 295 | 1.21e-12 | 69.3 |
| Msa0836790 | AT5G58080.1 | 49.206 | 63 | 31 | 1 | 189 | 251 | 191 | 252 | 1.37e-12 | 68.9 |
| Msa0836790 | AT3G04030.1 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 2.42e-12 | 67.8 |
| Msa0836790 | AT3G04030.3 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 2.70e-12 | 67.4 |
| Msa0836790 | AT5G06800.3 | 54.545 | 55 | 25 | 0 | 192 | 246 | 192 | 246 | 2.86e-12 | 66.6 |
| Msa0836790 | AT1G79430.2 | 60.000 | 55 | 22 | 0 | 192 | 246 | 34 | 88 | 3.55e-12 | 67.0 |
| Msa0836790 | AT1G67710.3 | 50.746 | 67 | 33 | 0 | 185 | 251 | 112 | 178 | 3.63e-12 | 67.4 |
| Msa0836790 | AT1G67710.2 | 50.746 | 67 | 33 | 0 | 185 | 251 | 121 | 187 | 3.66e-12 | 67.4 |
| Msa0836790 | AT1G67710.1 | 50.746 | 67 | 33 | 0 | 185 | 251 | 186 | 252 | 4.21e-12 | 67.4 |
| Msa0836790 | AT5G18240.2 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 4.93e-12 | 66.6 |
| Msa0836790 | AT5G18240.3 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 4.93e-12 | 66.6 |
| Msa0836790 | AT3G13040.3 | 50.000 | 64 | 32 | 0 | 183 | 246 | 232 | 295 | 5.20e-12 | 67.0 |
| Msa0836790 | AT3G13040.1 | 50.000 | 64 | 32 | 0 | 183 | 246 | 232 | 295 | 5.20e-12 | 67.0 |
| Msa0836790 | AT3G13040.2 | 50.000 | 64 | 32 | 0 | 183 | 246 | 232 | 295 | 5.20e-12 | 67.0 |
| Msa0836790 | AT5G18240.5 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 5.83e-12 | 66.6 |
| Msa0836790 | AT4G17695.1 | 41.237 | 97 | 47 | 2 | 177 | 272 | 148 | 235 | 5.89e-12 | 66.2 |
| Msa0836790 | AT5G18240.1 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 5.92e-12 | 66.6 |
| Msa0836790 | AT5G18240.4 | 56.364 | 55 | 24 | 0 | 192 | 246 | 45 | 99 | 5.92e-12 | 66.6 |
| Msa0836790 | AT3G04450.3 | 50.820 | 61 | 30 | 0 | 185 | 245 | 231 | 291 | 6.11e-12 | 65.9 |
| Msa0836790 | AT3G46640.2 | 47.541 | 61 | 31 | 1 | 191 | 251 | 143 | 202 | 6.33e-12 | 65.9 |
| Msa0836790 | AT3G46640.1 | 47.541 | 61 | 31 | 1 | 191 | 251 | 143 | 202 | 6.33e-12 | 65.9 |
| Msa0836790 | AT5G45580.1 | 56.364 | 55 | 24 | 0 | 192 | 246 | 7 | 61 | 6.84e-12 | 65.5 |
| Msa0836790 | AT5G45580.2 | 56.364 | 55 | 24 | 0 | 192 | 246 | 23 | 77 | 7.07e-12 | 65.5 |
| Msa0836790 | AT5G06800.1 | 54.545 | 55 | 25 | 0 | 192 | 246 | 192 | 246 | 8.17e-12 | 65.9 |
| Msa0836790 | AT3G46640.3 | 47.541 | 61 | 31 | 1 | 191 | 251 | 143 | 202 | 8.18e-12 | 65.9 |
| Msa0836790 | AT1G32240.2 | 38.776 | 98 | 51 | 1 | 182 | 279 | 203 | 291 | 8.41e-12 | 65.9 |
| Msa0836790 | AT5G06800.2 | 54.545 | 55 | 25 | 0 | 192 | 246 | 192 | 246 | 8.47e-12 | 65.9 |
| Msa0836790 | AT3G04450.1 | 50.820 | 61 | 30 | 0 | 185 | 245 | 231 | 291 | 1.07e-11 | 65.9 |
| Msa0836790 | AT1G32240.1 | 38.776 | 98 | 51 | 1 | 182 | 279 | 203 | 291 | 1.08e-11 | 65.9 |
| Msa0836790 | AT3G04450.4 | 50.820 | 61 | 30 | 0 | 185 | 245 | 191 | 251 | 1.26e-11 | 65.5 |
| Msa0836790 | AT3G04450.2 | 50.820 | 61 | 30 | 0 | 185 | 245 | 191 | 251 | 1.26e-11 | 65.5 |
| Msa0836790 | AT2G01760.2 | 50.000 | 62 | 30 | 1 | 190 | 251 | 226 | 286 | 1.55e-11 | 65.5 |
| Msa0836790 | AT2G01760.3 | 50.000 | 62 | 30 | 1 | 190 | 251 | 133 | 193 | 1.55e-11 | 64.7 |
| Msa0836790 | AT2G01760.1 | 50.000 | 62 | 30 | 1 | 190 | 251 | 198 | 258 | 1.66e-11 | 65.1 |
| Msa0836790 | AT1G69580.1 | 50.909 | 55 | 27 | 0 | 192 | 246 | 34 | 88 | 1.70e-11 | 64.7 |
| Msa0836790 | AT2G25180.1 | 46.377 | 69 | 36 | 1 | 191 | 259 | 194 | 261 | 1.74e-11 | 65.5 |
| Msa0836790 | AT1G69580.2 | 50.909 | 55 | 27 | 0 | 192 | 246 | 34 | 88 | 1.83e-11 | 64.7 |
| Msa0836790 | AT5G29000.4 | 52.632 | 57 | 27 | 0 | 189 | 245 | 228 | 284 | 2.15e-11 | 64.3 |
| Msa0836790 | AT4G31920.1 | 41.892 | 74 | 42 | 1 | 191 | 264 | 182 | 254 | 2.46e-11 | 65.1 |
| Msa0836790 | AT5G16560.1 | 51.562 | 64 | 31 | 0 | 182 | 245 | 209 | 272 | 2.56e-11 | 64.7 |
| Msa0836790 | AT4G28610.1 | 55.556 | 54 | 24 | 0 | 192 | 245 | 225 | 278 | 2.87e-11 | 64.7 |
| Msa0836790 | AT5G29000.1 | 52.632 | 57 | 27 | 0 | 189 | 245 | 185 | 241 | 4.78e-11 | 63.5 |
| Msa0836790 | AT5G29000.3 | 52.632 | 57 | 27 | 0 | 189 | 245 | 185 | 241 | 4.78e-11 | 63.5 |
| Msa0836790 | AT5G29000.2 | 52.632 | 57 | 27 | 0 | 189 | 245 | 228 | 284 | 4.83e-11 | 63.9 |
| Msa0836790 | AT5G42630.2 | 53.333 | 60 | 28 | 0 | 186 | 245 | 99 | 158 | 6.39e-11 | 62.0 |
| Msa0836790 | AT4G04605.1 | 53.571 | 56 | 26 | 0 | 190 | 245 | 12 | 67 | 9.71e-11 | 61.2 |
Find 76 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGGTGGAGGGGTATTTA+TGG | 0.172244 | 5_4:-10437479 | Msa0836790:CDS |
| CAGCCACTCCTAAGCAAATT+AGG | 0.199099 | 5_4:-10436688 | Msa0836790:CDS |
| AAAATTAGTTACCATCATTA+AGG | 0.265474 | 5_4:+10437865 | None:intergenic |
| CCAGCACCTCCTTTGTTTCC+TGG | 0.269810 | 5_4:+10437288 | None:intergenic |
| AAAAGTTGGGTTGATGAAAA+TGG | 0.274484 | 5_4:-10437726 | Msa0836790:CDS |
| ATTCCCAGTTTCGTCAATTC+AGG | 0.284606 | 5_4:-10436457 | Msa0836790:CDS |
| CAGCACTCAGCAAAATTTAG+AGG | 0.286569 | 5_4:+10436194 | None:intergenic |
| AGCAATCAGATTGCAGGAAT+TGG | 0.302511 | 5_4:-10436263 | Msa0836790:CDS |
| GCCTCCTGAATTGACGAAAC+TGG | 0.313674 | 5_4:+10436453 | None:intergenic |
| AATGGTGGAGGGGTATTTAT+GGG | 0.317942 | 5_4:-10437478 | Msa0836790:CDS |
| AAGAGTGGTGATGGTAGTTC+TGG | 0.342533 | 5_4:-10437376 | Msa0836790:CDS |
| AACCTTTGCAGCAGAGTTCC+AGG | 0.347695 | 5_4:-10437306 | Msa0836790:CDS |
| CTCCTTGGCGGATCTGTTCA+AGG | 0.348279 | 5_4:-10436327 | Msa0836790:CDS |
| ACTGTGATAATAAGAAGAAT+TGG | 0.370804 | 5_4:-10437688 | Msa0836790:CDS |
| ACAAGCTAAGAGCTTTAGTT+TGG | 0.377820 | 5_4:-10437425 | Msa0836790:CDS |
| AGCCACTCCTAAGCAAATTA+GGG | 0.392450 | 5_4:-10436687 | Msa0836790:CDS |
| CTCAGAGTCTGTTTCTCCAC+AGG | 0.393005 | 5_4:-10436367 | Msa0836790:CDS |
| TGCAAAGGTTGCGGCGGCTG+AGG | 0.403383 | 5_4:+10437319 | None:intergenic |
| CATCCATACTGTTTCTTCCA+TGG | 0.409764 | 5_4:+10436295 | None:intergenic |
| TTGTGATTATGCAGAAGTAT+AGG | 0.413901 | 5_4:-10436494 | Msa0836790:intron |
| TCTTTCATATCTGATATTGA+TGG | 0.420948 | 5_4:-10435985 | Msa0836790:three_prime_UTR |
| AAGATGAGCAATCAGATTGC+AGG | 0.425444 | 5_4:-10436269 | Msa0836790:CDS |
| TAAGGAGGAGTATGGAAAGA+GGG | 0.427844 | 5_4:+10437883 | None:intergenic |
| TAATAAGTTAGCCTTGTATA+TGG | 0.434530 | 5_4:-10436430 | Msa0836790:CDS |
| ACCATCATTAAGGAGGAGTA+TGG | 0.434982 | 5_4:+10437875 | None:intergenic |
| AAGCCATGGAAGAAACAGTA+TGG | 0.440126 | 5_4:-10436298 | Msa0836790:CDS |
| ACAATGAAGGTGATGATGAT+AGG | 0.445952 | 5_4:-10437519 | Msa0836790:CDS |
| CCTCTTACTCCTCTTCTCCT+TGG | 0.449715 | 5_4:-10436342 | Msa0836790:CDS |
| TATTGTCACTCACTTGCAAA+TGG | 0.459590 | 5_4:+10436621 | None:intergenic |
| TCCATACTCCTCCTTAATGA+TGG | 0.469852 | 5_4:-10437876 | Msa0836790:intron |
| CCAAGGAGAAGAGGAGTAAG+AGG | 0.476427 | 5_4:+10436342 | None:intergenic |
| TTCCCTAATTTGCTTAGGAG+TGG | 0.487933 | 5_4:+10436685 | None:intergenic |
| TTAAGGAGGAGTATGGAAAG+AGG | 0.491286 | 5_4:+10437882 | None:intergenic |
| CAGGAATTGGAAAAGTGATC+AGG | 0.500799 | 5_4:-10436250 | Msa0836790:CDS |
| ATTTAATGAAAATCTGTTGA+AGG | 0.503957 | 5_4:-10437455 | Msa0836790:CDS |
| TTCCTGGAACTCTGCTGCAA+AGG | 0.504800 | 5_4:+10437304 | None:intergenic |
| GTTGAAGTGCATCAACAAAT+CGG | 0.508453 | 5_4:+10437248 | None:intergenic |
| TGATGACTTAGTTCATAGCT+TGG | 0.508826 | 5_4:-10437946 | Msa0836790:CDS |
| CTTACTCCTCTTCTCCTTGG+CGG | 0.510102 | 5_4:-10436339 | Msa0836790:CDS |
| CCTCCTGAATTGACGAAACT+GGG | 0.520520 | 5_4:+10436454 | None:intergenic |
| ACAGTTACATGCAACTGTAC+TGG | 0.524248 | 5_4:+10435947 | None:intergenic |
| CCAGGAAACAAAGGAGGTGC+TGG | 0.526510 | 5_4:-10437288 | Msa0836790:CDS |
| GTTCAAGGTCTTTCAAGCCA+TGG | 0.531430 | 5_4:-10436312 | Msa0836790:CDS |
| GAACTCTGCTGCAAAGGTTG+CGG | 0.536482 | 5_4:+10437310 | None:intergenic |
| AGGGAAAAGATGCAAGTGGA+TGG | 0.538779 | 5_4:-10436668 | Msa0836790:CDS |
| TCAGAGTCTGTTTCTCCACA+GGG | 0.539092 | 5_4:-10436366 | Msa0836790:CDS |
| GGATGAGTTCAGCTCAGCTA+TGG | 0.541177 | 5_4:-10437667 | Msa0836790:CDS |
| GGAAATTCAAAGAGTGGTGA+TGG | 0.543852 | 5_4:-10437385 | Msa0836790:CDS |
| GTTGTTGAGGAAATGAGAAA+CGG | 0.545414 | 5_4:+10438010 | None:intergenic |
| TAATGAAAATCTGTTGAAGG+AGG | 0.547757 | 5_4:-10437452 | Msa0836790:CDS |
| CTCTGCTGCAAAGGTTGCGG+CGG | 0.547761 | 5_4:+10437313 | None:intergenic |
| TGGTTTGAACAACGTTGTTG+AGG | 0.552246 | 5_4:+10437997 | None:intergenic |
| TGTGAAGAAGATACATCAAA+GGG | 0.552624 | 5_4:-10436396 | Msa0836790:CDS |
| TTCATATCTGATATTGATGG+AGG | 0.558322 | 5_4:-10435982 | Msa0836790:three_prime_UTR |
| CCCAGTTTCGTCAATTCAGG+AGG | 0.558843 | 5_4:-10436454 | Msa0836790:CDS |
| ACAAAGGAGGTGCTGGTCGT+CGG | 0.559002 | 5_4:-10437281 | Msa0836790:CDS |
| CAACAGCTTGGTGGAGCACA+TGG | 0.565013 | 5_4:-10437229 | Msa0836790:intron |
| GTTGATGCACTTCAACAGCT+TGG | 0.565906 | 5_4:-10437241 | Msa0836790:CDS |
| ACAGAAGAGTAATGGTGGAG+GGG | 0.566775 | 5_4:-10437488 | Msa0836790:CDS |
| GTGTTACAGAAGAGTAATGG+TGG | 0.573520 | 5_4:-10437493 | Msa0836790:CDS |
| ACAGATCCGCCAAGGAGAAG+AGG | 0.577634 | 5_4:+10436333 | None:intergenic |
| ATGTGAAGAAGATACATCAA+AGG | 0.582691 | 5_4:-10436397 | Msa0836790:CDS |
| GATGCACTTCAACAGCTTGG+TGG | 0.583631 | 5_4:-10437238 | Msa0836790:CDS |
| ATTAGTTACCATCATTAAGG+AGG | 0.585189 | 5_4:+10437868 | None:intergenic |
| AGCAGAGTTCCAGGAAACAA+AGG | 0.588997 | 5_4:-10437297 | Msa0836790:CDS |
| ATTGTGTTACAGAAGAGTAA+TGG | 0.592672 | 5_4:-10437496 | Msa0836790:CDS |
| TTACAGAAGAGTAATGGTGG+AGG | 0.599891 | 5_4:-10437490 | Msa0836790:CDS |
| TACAGAAGAGTAATGGTGGA+GGG | 0.606656 | 5_4:-10437489 | Msa0836790:CDS |
| GACCTTGAACAGATCCGCCA+AGG | 0.609074 | 5_4:+10436325 | None:intergenic |
| AATTAGGGAAAAGATGCAAG+TGG | 0.615575 | 5_4:-10436672 | Msa0836790:CDS |
| TTGATCTTGAGCCATATACA+AGG | 0.616538 | 5_4:+10436419 | None:intergenic |
| AGTCATGGAAATTCAAAGAG+TGG | 0.617489 | 5_4:-10437391 | Msa0836790:CDS |
| TTGGTGTCTGAAGTGAGTCA+TGG | 0.626831 | 5_4:-10437406 | Msa0836790:CDS |
| AAGTTTCTGAGACATGTCGT+TGG | 0.646359 | 5_4:+10437977 | None:intergenic |
| AGAGGAGTAAGAGGACCCTG+TGG | 0.650364 | 5_4:+10436351 | None:intergenic |
| AGAGTTCCAGGAAACAAAGG+AGG | 0.672803 | 5_4:-10437294 | Msa0836790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCTAATTAATTTTTG+TGG | - | chr5_4:10436175-10436194 | Msa0836790:three_prime_UTR | 10.0% |
| !! | AAAATTAACAAAAAAGAAAA+AGG | + | chr5_4:10436224-10436243 | None:intergenic | 10.0% |
| !! | AAAAATCACAATTAAAAAAA+AGG | + | chr5_4:10436435-10436454 | None:intergenic | 10.0% |
| !!! | AATTTTCTAATTAATTTTTG+TGG | - | chr5_4:10436175-10436194 | Msa0836790:three_prime_UTR | 10.0% |
| !! | AAAATTAACAAAAAAGAAAA+AGG | + | chr5_4:10436224-10436243 | None:intergenic | 10.0% |
| !! | AAAAATCACAATTAAAAAAA+AGG | + | chr5_4:10436435-10436454 | None:intergenic | 10.0% |
| !! | AAAAAGAAAAAACATCATCA+TGG | - | chr5_4:10435942-10435961 | Msa0836790:three_prime_UTR | 20.0% |
| !! | AAAATTAGTTACCATCATTA+AGG | + | chr5_4:10436161-10436180 | None:intergenic | 20.0% |
| !! | AATGATGAAAAAGAAAAAGT+TGG | - | chr5_4:10436283-10436302 | Msa0836790:CDS | 20.0% |
| !! | ATGATGAAAAAGAAAAAGTT+GGG | - | chr5_4:10436284-10436303 | Msa0836790:CDS | 20.0% |
| !! | ATTTAATGAAAATCTGTTGA+AGG | - | chr5_4:10436568-10436587 | Msa0836790:intron | 20.0% |
| !!! | AGTTCTAAGTTATAACAAAT+AGG | + | chr5_4:10437210-10437229 | None:intergenic | 20.0% |
| !! | TATGAAAAACAAAATCACTA+TGG | + | chr5_4:10437960-10437979 | None:intergenic | 20.0% |
| !!! | TGTTTTTCATAATTATGCTA+TGG | - | chr5_4:10437969-10437988 | Msa0836790:CDS | 20.0% |
| !! | AAAAAGAAAAAACATCATCA+TGG | - | chr5_4:10435942-10435961 | Msa0836790:three_prime_UTR | 20.0% |
| !! | AAAATTAGTTACCATCATTA+AGG | + | chr5_4:10436161-10436180 | None:intergenic | 20.0% |
| !! | AATGATGAAAAAGAAAAAGT+TGG | - | chr5_4:10436283-10436302 | Msa0836790:CDS | 20.0% |
| !! | ATGATGAAAAAGAAAAAGTT+GGG | - | chr5_4:10436284-10436303 | Msa0836790:CDS | 20.0% |
| !! | ATTTAATGAAAATCTGTTGA+AGG | - | chr5_4:10436568-10436587 | Msa0836790:intron | 20.0% |
| !!! | AGTTCTAAGTTATAACAAAT+AGG | + | chr5_4:10437210-10437229 | None:intergenic | 20.0% |
| !! | TATGAAAAACAAAATCACTA+TGG | + | chr5_4:10437960-10437979 | None:intergenic | 20.0% |
| !!! | TGTTTTTCATAATTATGCTA+TGG | - | chr5_4:10437969-10437988 | Msa0836790:CDS | 20.0% |
| !!! | TTGTGGTATTTCTTGTTTTT+TGG | - | chr5_4:10436192-10436211 | Msa0836790:three_prime_UTR | 25.0% |
| ! | ACTGTGATAATAAGAAGAAT+TGG | - | chr5_4:10436335-10436354 | Msa0836790:CDS | 25.0% |
| !! | ATGGACTAATCAAACAAAAA+CGG | - | chr5_4:10436375-10436394 | Msa0836790:CDS | 25.0% |
| !!! | TTTTTTTGGTAGAACAATGA+AGG | - | chr5_4:10436491-10436510 | Msa0836790:intron | 25.0% |
| !!! | TCTTAGTGTCTATTTTGTTT+TGG | - | chr5_4:10436893-10436912 | Msa0836790:intron | 25.0% |
| !!! | TGTCTATTTTGTTTTGGATT+TGG | - | chr5_4:10436899-10436918 | Msa0836790:intron | 25.0% |
| !! | CAATTTGGAATTGAAATTGT+GGG | - | chr5_4:10436939-10436958 | Msa0836790:intron | 25.0% |
| ! | AGATTACATGACATGTTATT+AGG | - | chr5_4:10437170-10437189 | Msa0836790:intron | 25.0% |
| ! | GATTACATGACATGTTATTA+GGG | - | chr5_4:10437171-10437190 | Msa0836790:intron | 25.0% |
| !! | ATGTTATTAGGGATTAGTAT+AGG | - | chr5_4:10437182-10437201 | Msa0836790:intron | 25.0% |
| ! | TACAAAAAAGAAAACCAGTT+AGG | + | chr5_4:10437314-10437333 | None:intergenic | 25.0% |
| ! | ACTAATAATCGTATTAACCA+TGG | + | chr5_4:10437451-10437470 | None:intergenic | 25.0% |
| !!! | TAATAAGTTAGCCTTGTATA+TGG | - | chr5_4:10437593-10437612 | Msa0836790:intron | 25.0% |
| ! | TCTTTCATATCTGATATTGA+TGG | - | chr5_4:10438038-10438057 | Msa0836790:CDS | 25.0% |
| !!! | TTGTGGTATTTCTTGTTTTT+TGG | - | chr5_4:10436192-10436211 | Msa0836790:three_prime_UTR | 25.0% |
| ! | ACTGTGATAATAAGAAGAAT+TGG | - | chr5_4:10436335-10436354 | Msa0836790:CDS | 25.0% |
| !! | ATGGACTAATCAAACAAAAA+CGG | - | chr5_4:10436375-10436394 | Msa0836790:CDS | 25.0% |
| !!! | TTTTTTTGGTAGAACAATGA+AGG | - | chr5_4:10436491-10436510 | Msa0836790:intron | 25.0% |
| !!! | TCTTAGTGTCTATTTTGTTT+TGG | - | chr5_4:10436893-10436912 | Msa0836790:intron | 25.0% |
| !!! | TGTCTATTTTGTTTTGGATT+TGG | - | chr5_4:10436899-10436918 | Msa0836790:intron | 25.0% |
| !! | CAATTTGGAATTGAAATTGT+GGG | - | chr5_4:10436939-10436958 | Msa0836790:intron | 25.0% |
| ! | AGATTACATGACATGTTATT+AGG | - | chr5_4:10437170-10437189 | Msa0836790:intron | 25.0% |
| ! | GATTACATGACATGTTATTA+GGG | - | chr5_4:10437171-10437190 | Msa0836790:intron | 25.0% |
| !! | ATGTTATTAGGGATTAGTAT+AGG | - | chr5_4:10437182-10437201 | Msa0836790:intron | 25.0% |
| ! | TACAAAAAAGAAAACCAGTT+AGG | + | chr5_4:10437314-10437333 | None:intergenic | 25.0% |
| ! | ACTAATAATCGTATTAACCA+TGG | + | chr5_4:10437451-10437470 | None:intergenic | 25.0% |
| !!! | TAATAAGTTAGCCTTGTATA+TGG | - | chr5_4:10437593-10437612 | Msa0836790:intron | 25.0% |
| ! | TCTTTCATATCTGATATTGA+TGG | - | chr5_4:10438038-10438057 | Msa0836790:CDS | 25.0% |
| ATTAGTTACCATCATTAAGG+AGG | + | chr5_4:10436158-10436177 | None:intergenic | 30.0% | |
| !! | AAAAGTTGGGTTGATGAAAA+TGG | - | chr5_4:10436297-10436316 | Msa0836790:CDS | 30.0% |
| ATTGTGTTACAGAAGAGTAA+TGG | - | chr5_4:10436527-10436546 | Msa0836790:intron | 30.0% | |
| TAATGAAAATCTGTTGAAGG+AGG | - | chr5_4:10436571-10436590 | Msa0836790:intron | 30.0% | |
| ! | AGTGTTGCTCTGATTTATTA+TGG | - | chr5_4:10436859-10436878 | Msa0836790:intron | 30.0% |
| GCTCTGATTTATTATGGTAT+AGG | - | chr5_4:10436865-10436884 | Msa0836790:intron | 30.0% | |
| ! | ATAGAGTTGATTCTCCAATT+TGG | - | chr5_4:10436924-10436943 | Msa0836790:intron | 30.0% |
| CCACAATTTCAATTCCAAAT+TGG | + | chr5_4:10436941-10436960 | None:intergenic | 30.0% | |
| ! | CCAATTTGGAATTGAAATTG+TGG | - | chr5_4:10436938-10436957 | Msa0836790:intron | 30.0% |
| AATCAATCTTAGTCGTTGTA+TGG | - | chr5_4:10437030-10437049 | Msa0836790:intron | 30.0% | |
| TAGAACTGTTCGATTAAGAT+TGG | - | chr5_4:10437223-10437242 | Msa0836790:intron | 30.0% | |
| !!! | ATTTTTTGCAATCAGCAAGA+TGG | + | chr5_4:10437255-10437274 | None:intergenic | 30.0% |
| !! | AAAAAATTTTGACCGTACAC+AGG | - | chr5_4:10437268-10437287 | Msa0836790:CDS | 30.0% |
| !!! | ATCTTTTCCCTAATTTGCTT+AGG | + | chr5_4:10437346-10437365 | None:intergenic | 30.0% |
| ATAATCGTATTAACCATGGA+TGG | + | chr5_4:10437447-10437466 | None:intergenic | 30.0% | |
| ! | TTGTGATTATGCAGAAGTAT+AGG | - | chr5_4:10437529-10437548 | Msa0836790:intron | 30.0% |
| ATGTGAAGAAGATACATCAA+AGG | - | chr5_4:10437626-10437645 | Msa0836790:intron | 30.0% | |
| TGTGAAGAAGATACATCAAA+GGG | - | chr5_4:10437627-10437646 | Msa0836790:intron | 30.0% | |
| !!! | ATGGTTATTTTAGACTGTTG+TGG | - | chr5_4:10437988-10438007 | Msa0836790:CDS | 30.0% |
| TTCATATCTGATATTGATGG+AGG | - | chr5_4:10438041-10438060 | Msa0836790:CDS | 30.0% | |
| ATTAGTTACCATCATTAAGG+AGG | + | chr5_4:10436158-10436177 | None:intergenic | 30.0% | |
| !! | AAAAGTTGGGTTGATGAAAA+TGG | - | chr5_4:10436297-10436316 | Msa0836790:CDS | 30.0% |
| ATTGTGTTACAGAAGAGTAA+TGG | - | chr5_4:10436527-10436546 | Msa0836790:intron | 30.0% | |
| TAATGAAAATCTGTTGAAGG+AGG | - | chr5_4:10436571-10436590 | Msa0836790:intron | 30.0% | |
| ! | AGTGTTGCTCTGATTTATTA+TGG | - | chr5_4:10436859-10436878 | Msa0836790:intron | 30.0% |
| GCTCTGATTTATTATGGTAT+AGG | - | chr5_4:10436865-10436884 | Msa0836790:intron | 30.0% | |
| ! | ATAGAGTTGATTCTCCAATT+TGG | - | chr5_4:10436924-10436943 | Msa0836790:intron | 30.0% |
| CCACAATTTCAATTCCAAAT+TGG | + | chr5_4:10436941-10436960 | None:intergenic | 30.0% | |
| ! | CCAATTTGGAATTGAAATTG+TGG | - | chr5_4:10436938-10436957 | Msa0836790:intron | 30.0% |
| AATCAATCTTAGTCGTTGTA+TGG | - | chr5_4:10437030-10437049 | Msa0836790:intron | 30.0% | |
| TAGAACTGTTCGATTAAGAT+TGG | - | chr5_4:10437223-10437242 | Msa0836790:intron | 30.0% | |
| !!! | ATTTTTTGCAATCAGCAAGA+TGG | + | chr5_4:10437255-10437274 | None:intergenic | 30.0% |
| !! | AAAAAATTTTGACCGTACAC+AGG | - | chr5_4:10437268-10437287 | Msa0836790:CDS | 30.0% |
| !!! | ATCTTTTCCCTAATTTGCTT+AGG | + | chr5_4:10437346-10437365 | None:intergenic | 30.0% |
| ATAATCGTATTAACCATGGA+TGG | + | chr5_4:10437447-10437466 | None:intergenic | 30.0% | |
| ! | TTGTGATTATGCAGAAGTAT+AGG | - | chr5_4:10437529-10437548 | Msa0836790:intron | 30.0% |
| ATGTGAAGAAGATACATCAA+AGG | - | chr5_4:10437626-10437645 | Msa0836790:intron | 30.0% | |
| TGTGAAGAAGATACATCAAA+GGG | - | chr5_4:10437627-10437646 | Msa0836790:intron | 30.0% | |
| !!! | ATGGTTATTTTAGACTGTTG+TGG | - | chr5_4:10437988-10438007 | Msa0836790:CDS | 30.0% |
| TTCATATCTGATATTGATGG+AGG | - | chr5_4:10438041-10438060 | Msa0836790:CDS | 30.0% | |
| ! | AGGAAATGAGAAACGGTTTT+TGG | + | chr5_4:10436009-10436028 | None:intergenic | 35.0% |
| GTTGTTGAGGAAATGAGAAA+CGG | + | chr5_4:10436016-10436035 | None:intergenic | 35.0% | |
| TGATGACTTAGTTCATAGCT+TGG | - | chr5_4:10436077-10436096 | Msa0836790:three_prime_UTR | 35.0% | |
| ! | ACAATGAAGGTGATGATGAT+AGG | - | chr5_4:10436504-10436523 | Msa0836790:intron | 35.0% |
| ! | ACAAGCTAAGAGCTTTAGTT+TGG | - | chr5_4:10436598-10436617 | Msa0836790:intron | 35.0% |
| AGTCATGGAAATTCAAAGAG+TGG | - | chr5_4:10436632-10436651 | Msa0836790:intron | 35.0% | |
| GTTGAAGTGCATCAACAAAT+CGG | + | chr5_4:10436778-10436797 | None:intergenic | 35.0% | |
| ! | TGAAATTGTGGGTCTTGTAT+TGG | - | chr5_4:10436950-10436969 | Msa0836790:intron | 35.0% |
| ! | GAAATTGTGGGTCTTGTATT+GGG | - | chr5_4:10436951-10436970 | Msa0836790:intron | 35.0% |
| AACTGTTCGATTAAGATTGG+AGG | - | chr5_4:10437226-10437245 | Msa0836790:intron | 35.0% | |
| AATTAGGGAAAAGATGCAAG+TGG | - | chr5_4:10437351-10437370 | Msa0836790:CDS | 35.0% | |
| TATTGTCACTCACTTGCAAA+TGG | + | chr5_4:10437405-10437424 | None:intergenic | 35.0% | |
| TTGATCTTGAGCCATATACA+AGG | + | chr5_4:10437607-10437626 | None:intergenic | 35.0% | |
| ! | AGGAAATGAGAAACGGTTTT+TGG | + | chr5_4:10436009-10436028 | None:intergenic | 35.0% |
| GTTGTTGAGGAAATGAGAAA+CGG | + | chr5_4:10436016-10436035 | None:intergenic | 35.0% | |
| TGATGACTTAGTTCATAGCT+TGG | - | chr5_4:10436077-10436096 | Msa0836790:three_prime_UTR | 35.0% | |
| ! | ACAATGAAGGTGATGATGAT+AGG | - | chr5_4:10436504-10436523 | Msa0836790:intron | 35.0% |
| ! | ACAAGCTAAGAGCTTTAGTT+TGG | - | chr5_4:10436598-10436617 | Msa0836790:intron | 35.0% |
| AGTCATGGAAATTCAAAGAG+TGG | - | chr5_4:10436632-10436651 | Msa0836790:intron | 35.0% | |
| GTTGAAGTGCATCAACAAAT+CGG | + | chr5_4:10436778-10436797 | None:intergenic | 35.0% | |
| ! | TGAAATTGTGGGTCTTGTAT+TGG | - | chr5_4:10436950-10436969 | Msa0836790:intron | 35.0% |
| ! | GAAATTGTGGGTCTTGTATT+GGG | - | chr5_4:10436951-10436970 | Msa0836790:intron | 35.0% |
| AACTGTTCGATTAAGATTGG+AGG | - | chr5_4:10437226-10437245 | Msa0836790:intron | 35.0% | |
| AATTAGGGAAAAGATGCAAG+TGG | - | chr5_4:10437351-10437370 | Msa0836790:CDS | 35.0% | |
| TATTGTCACTCACTTGCAAA+TGG | + | chr5_4:10437405-10437424 | None:intergenic | 35.0% | |
| TTGATCTTGAGCCATATACA+AGG | + | chr5_4:10437607-10437626 | None:intergenic | 35.0% | |
| !!! | AGAAACGGTTTTTGGAACAG+AGG | + | chr5_4:10436001-10436020 | None:intergenic | 40.0% |
| TGGTTTGAACAACGTTGTTG+AGG | + | chr5_4:10436029-10436048 | None:intergenic | 40.0% | |
| !! | AAGTTTCTGAGACATGTCGT+TGG | + | chr5_4:10436049-10436068 | None:intergenic | 40.0% |
| ! | TAAGGAGGAGTATGGAAAGA+GGG | + | chr5_4:10436143-10436162 | None:intergenic | 40.0% |
| ! | TTAAGGAGGAGTATGGAAAG+AGG | + | chr5_4:10436144-10436163 | None:intergenic | 40.0% |
| TCCATACTCCTCCTTAATGA+TGG | - | chr5_4:10436147-10436166 | Msa0836790:three_prime_UTR | 40.0% | |
| ACCATCATTAAGGAGGAGTA+TGG | + | chr5_4:10436151-10436170 | None:intergenic | 40.0% | |
| GTGTTACAGAAGAGTAATGG+TGG | - | chr5_4:10436530-10436549 | Msa0836790:intron | 40.0% | |
| TTACAGAAGAGTAATGGTGG+AGG | - | chr5_4:10436533-10436552 | Msa0836790:intron | 40.0% | |
| ! | TACAGAAGAGTAATGGTGGA+GGG | - | chr5_4:10436534-10436553 | Msa0836790:intron | 40.0% |
| !! | TAATGGTGGAGGGGTATTTA+TGG | - | chr5_4:10436544-10436563 | Msa0836790:intron | 40.0% |
| !! | AATGGTGGAGGGGTATTTAT+GGG | - | chr5_4:10436545-10436564 | Msa0836790:intron | 40.0% |
| GGAAATTCAAAGAGTGGTGA+TGG | - | chr5_4:10436638-10436657 | Msa0836790:CDS | 40.0% | |
| AATCTGGATTACCTGCAGTT+AGG | - | chr5_4:10436984-10437003 | Msa0836790:intron | 40.0% | |
| ACCTGCAGTTAGGAAATATG+TGG | - | chr5_4:10436994-10437013 | Msa0836790:intron | 40.0% | |
| TCCACATATTTCCTAACTGC+AGG | + | chr5_4:10436998-10437017 | None:intergenic | 40.0% | |
| GTTGTAAGATGCAGATCAGA+TGG | + | chr5_4:10437106-10437125 | None:intergenic | 40.0% | |
| GAATCCCACTCTTGTGTATA+GGG | - | chr5_4:10437143-10437162 | Msa0836790:intron | 40.0% | |
| TGATCCCTATACACAAGAGT+GGG | + | chr5_4:10437150-10437169 | None:intergenic | 40.0% | |
| TTGATCCCTATACACAAGAG+TGG | + | chr5_4:10437151-10437170 | None:intergenic | 40.0% | |
| AGCCACTCCTAAGCAAATTA+GGG | - | chr5_4:10437336-10437355 | Msa0836790:CDS | 40.0% | |
| !! | TTCCCTAATTTGCTTAGGAG+TGG | + | chr5_4:10437341-10437360 | None:intergenic | 40.0% |
| CGTATTAACCATGGATGGTT+TGG | + | chr5_4:10437442-10437461 | None:intergenic | 40.0% | |
| ATTCCCAGTTTCGTCAATTC+AGG | - | chr5_4:10437566-10437585 | Msa0836790:intron | 40.0% | |
| AAGCCATGGAAGAAACAGTA+TGG | - | chr5_4:10437725-10437744 | Msa0836790:CDS | 40.0% | |
| ! | CATCCATACTGTTTCTTCCA+TGG | + | chr5_4:10437731-10437750 | None:intergenic | 40.0% |
| AAGATGAGCAATCAGATTGC+AGG | - | chr5_4:10437754-10437773 | Msa0836790:CDS | 40.0% | |
| AGCAATCAGATTGCAGGAAT+TGG | - | chr5_4:10437760-10437779 | Msa0836790:intron | 40.0% | |
| CAGGAATTGGAAAAGTGATC+AGG | - | chr5_4:10437773-10437792 | Msa0836790:intron | 40.0% | |
| CAGCACTCAGCAAAATTTAG+AGG | + | chr5_4:10437832-10437851 | None:intergenic | 40.0% | |
| ACAGTTACATGCAACTGTAC+TGG | + | chr5_4:10438079-10438098 | None:intergenic | 40.0% | |
| !!! | AGAAACGGTTTTTGGAACAG+AGG | + | chr5_4:10436001-10436020 | None:intergenic | 40.0% |
| TGGTTTGAACAACGTTGTTG+AGG | + | chr5_4:10436029-10436048 | None:intergenic | 40.0% | |
| !! | AAGTTTCTGAGACATGTCGT+TGG | + | chr5_4:10436049-10436068 | None:intergenic | 40.0% |
| ! | TAAGGAGGAGTATGGAAAGA+GGG | + | chr5_4:10436143-10436162 | None:intergenic | 40.0% |
| ! | TTAAGGAGGAGTATGGAAAG+AGG | + | chr5_4:10436144-10436163 | None:intergenic | 40.0% |
| TCCATACTCCTCCTTAATGA+TGG | - | chr5_4:10436147-10436166 | Msa0836790:three_prime_UTR | 40.0% | |
| ACCATCATTAAGGAGGAGTA+TGG | + | chr5_4:10436151-10436170 | None:intergenic | 40.0% | |
| GTGTTACAGAAGAGTAATGG+TGG | - | chr5_4:10436530-10436549 | Msa0836790:intron | 40.0% | |
| TTACAGAAGAGTAATGGTGG+AGG | - | chr5_4:10436533-10436552 | Msa0836790:intron | 40.0% | |
| ! | TACAGAAGAGTAATGGTGGA+GGG | - | chr5_4:10436534-10436553 | Msa0836790:intron | 40.0% |
| !! | TAATGGTGGAGGGGTATTTA+TGG | - | chr5_4:10436544-10436563 | Msa0836790:intron | 40.0% |
| !! | AATGGTGGAGGGGTATTTAT+GGG | - | chr5_4:10436545-10436564 | Msa0836790:intron | 40.0% |
| GGAAATTCAAAGAGTGGTGA+TGG | - | chr5_4:10436638-10436657 | Msa0836790:CDS | 40.0% | |
| AATCTGGATTACCTGCAGTT+AGG | - | chr5_4:10436984-10437003 | Msa0836790:intron | 40.0% | |
| ACCTGCAGTTAGGAAATATG+TGG | - | chr5_4:10436994-10437013 | Msa0836790:intron | 40.0% | |
| TCCACATATTTCCTAACTGC+AGG | + | chr5_4:10436998-10437017 | None:intergenic | 40.0% | |
| GTTGTAAGATGCAGATCAGA+TGG | + | chr5_4:10437106-10437125 | None:intergenic | 40.0% | |
| GAATCCCACTCTTGTGTATA+GGG | - | chr5_4:10437143-10437162 | Msa0836790:intron | 40.0% | |
| TGATCCCTATACACAAGAGT+GGG | + | chr5_4:10437150-10437169 | None:intergenic | 40.0% | |
| TTGATCCCTATACACAAGAG+TGG | + | chr5_4:10437151-10437170 | None:intergenic | 40.0% | |
| AGCCACTCCTAAGCAAATTA+GGG | - | chr5_4:10437336-10437355 | Msa0836790:CDS | 40.0% | |
| !! | TTCCCTAATTTGCTTAGGAG+TGG | + | chr5_4:10437341-10437360 | None:intergenic | 40.0% |
| CGTATTAACCATGGATGGTT+TGG | + | chr5_4:10437442-10437461 | None:intergenic | 40.0% | |
| ATTCCCAGTTTCGTCAATTC+AGG | - | chr5_4:10437566-10437585 | Msa0836790:intron | 40.0% | |
| AAGCCATGGAAGAAACAGTA+TGG | - | chr5_4:10437725-10437744 | Msa0836790:CDS | 40.0% | |
| ! | CATCCATACTGTTTCTTCCA+TGG | + | chr5_4:10437731-10437750 | None:intergenic | 40.0% |
| AAGATGAGCAATCAGATTGC+AGG | - | chr5_4:10437754-10437773 | Msa0836790:CDS | 40.0% | |
| AGCAATCAGATTGCAGGAAT+TGG | - | chr5_4:10437760-10437779 | Msa0836790:intron | 40.0% | |
| CAGGAATTGGAAAAGTGATC+AGG | - | chr5_4:10437773-10437792 | Msa0836790:intron | 40.0% | |
| CAGCACTCAGCAAAATTTAG+AGG | + | chr5_4:10437832-10437851 | None:intergenic | 40.0% | |
| ACAGTTACATGCAACTGTAC+TGG | + | chr5_4:10438079-10438098 | None:intergenic | 40.0% | |
| ! | ACAGAAGAGTAATGGTGGAG+GGG | - | chr5_4:10436535-10436554 | Msa0836790:intron | 45.0% |
| ! | TTGGTGTCTGAAGTGAGTCA+TGG | - | chr5_4:10436617-10436636 | Msa0836790:intron | 45.0% |
| !! | AAGAGTGGTGATGGTAGTTC+TGG | - | chr5_4:10436647-10436666 | Msa0836790:CDS | 45.0% |
| AGCAGAGTTCCAGGAAACAA+AGG | - | chr5_4:10436726-10436745 | Msa0836790:intron | 45.0% | |
| AGAGTTCCAGGAAACAAAGG+AGG | - | chr5_4:10436729-10436748 | Msa0836790:intron | 45.0% | |
| GTTGATGCACTTCAACAGCT+TGG | - | chr5_4:10436782-10436801 | Msa0836790:intron | 45.0% | |
| ! | ATTGTGGGTCTTGTATTGGG+TGG | - | chr5_4:10436954-10436973 | Msa0836790:intron | 45.0% |
| ! | TTGTGGGTCTTGTATTGGGT+GGG | - | chr5_4:10436955-10436974 | Msa0836790:intron | 45.0% |
| AAGATGCAGATCAGATGGCT+TGG | + | chr5_4:10437101-10437120 | None:intergenic | 45.0% | |
| ACAACTGAGACAACCACTAC+AGG | - | chr5_4:10437121-10437140 | Msa0836790:intron | 45.0% | |
| GGAATCCCACTCTTGTGTAT+AGG | - | chr5_4:10437142-10437161 | Msa0836790:intron | 45.0% | |
| CAGCCACTCCTAAGCAAATT+AGG | - | chr5_4:10437335-10437354 | Msa0836790:CDS | 45.0% | |
| AGGGAAAAGATGCAAGTGGA+TGG | - | chr5_4:10437355-10437374 | Msa0836790:CDS | 45.0% | |
| CTCAAACTCCAAACCATCCA+TGG | - | chr5_4:10437431-10437450 | Msa0836790:CDS | 45.0% | |
| CCTCCTGAATTGACGAAACT+GGG | + | chr5_4:10437572-10437591 | None:intergenic | 45.0% | |
| ! | TCAGAGTCTGTTTCTCCACA+GGG | - | chr5_4:10437657-10437676 | Msa0836790:CDS | 45.0% |
| GTTCAAGGTCTTTCAAGCCA+TGG | - | chr5_4:10437711-10437730 | Msa0836790:CDS | 45.0% | |
| ! | ACAGAAGAGTAATGGTGGAG+GGG | - | chr5_4:10436535-10436554 | Msa0836790:intron | 45.0% |
| ! | TTGGTGTCTGAAGTGAGTCA+TGG | - | chr5_4:10436617-10436636 | Msa0836790:intron | 45.0% |
| !! | AAGAGTGGTGATGGTAGTTC+TGG | - | chr5_4:10436647-10436666 | Msa0836790:CDS | 45.0% |
| AGCAGAGTTCCAGGAAACAA+AGG | - | chr5_4:10436726-10436745 | Msa0836790:intron | 45.0% | |
| AGAGTTCCAGGAAACAAAGG+AGG | - | chr5_4:10436729-10436748 | Msa0836790:intron | 45.0% | |
| GTTGATGCACTTCAACAGCT+TGG | - | chr5_4:10436782-10436801 | Msa0836790:intron | 45.0% | |
| ! | ATTGTGGGTCTTGTATTGGG+TGG | - | chr5_4:10436954-10436973 | Msa0836790:intron | 45.0% |
| ! | TTGTGGGTCTTGTATTGGGT+GGG | - | chr5_4:10436955-10436974 | Msa0836790:intron | 45.0% |
| AAGATGCAGATCAGATGGCT+TGG | + | chr5_4:10437101-10437120 | None:intergenic | 45.0% | |
| ACAACTGAGACAACCACTAC+AGG | - | chr5_4:10437121-10437140 | Msa0836790:intron | 45.0% | |
| GGAATCCCACTCTTGTGTAT+AGG | - | chr5_4:10437142-10437161 | Msa0836790:intron | 45.0% | |
| CAGCCACTCCTAAGCAAATT+AGG | - | chr5_4:10437335-10437354 | Msa0836790:CDS | 45.0% | |
| AGGGAAAAGATGCAAGTGGA+TGG | - | chr5_4:10437355-10437374 | Msa0836790:CDS | 45.0% | |
| CTCAAACTCCAAACCATCCA+TGG | - | chr5_4:10437431-10437450 | Msa0836790:CDS | 45.0% | |
| CCTCCTGAATTGACGAAACT+GGG | + | chr5_4:10437572-10437591 | None:intergenic | 45.0% | |
| ! | TCAGAGTCTGTTTCTCCACA+GGG | - | chr5_4:10437657-10437676 | Msa0836790:CDS | 45.0% |
| GTTCAAGGTCTTTCAAGCCA+TGG | - | chr5_4:10437711-10437730 | Msa0836790:CDS | 45.0% | |
| !!! | ATAAAAAAAAATGTTTTTTT+TGG | - | chr5_4:10436477-10436496 | Msa0836790:CDS | 5.0% |
| !!! | ATAAAAAAAAATGTTTTTTT+TGG | - | chr5_4:10436477-10436496 | Msa0836790:CDS | 5.0% |
| GGATGAGTTCAGCTCAGCTA+TGG | - | chr5_4:10436356-10436375 | Msa0836790:CDS | 50.0% | |
| GAACTCTGCTGCAAAGGTTG+CGG | + | chr5_4:10436716-10436735 | None:intergenic | 50.0% | |
| AACCTTTGCAGCAGAGTTCC+AGG | - | chr5_4:10436717-10436736 | Msa0836790:intron | 50.0% | |
| TTCCTGGAACTCTGCTGCAA+AGG | + | chr5_4:10436722-10436741 | None:intergenic | 50.0% | |
| GATGCACTTCAACAGCTTGG+TGG | - | chr5_4:10436785-10436804 | Msa0836790:intron | 50.0% | |
| ! | TGTGGGTCTTGTATTGGGTG+GGG | - | chr5_4:10436956-10436975 | Msa0836790:intron | 50.0% |
| CAAGAGTGGGATTCCTGTAG+TGG | + | chr5_4:10437137-10437156 | None:intergenic | 50.0% | |
| TGACCGTACACAGGCTATGT+AGG | - | chr5_4:10437277-10437296 | Msa0836790:CDS | 50.0% | |
| GACCGTACACAGGCTATGTA+GGG | - | chr5_4:10437278-10437297 | Msa0836790:CDS | 50.0% | |
| CACCCTACATAGCCTGTGTA+CGG | + | chr5_4:10437283-10437302 | None:intergenic | 50.0% | |
| AGGGTGTGTATGAGCCTAAC+TGG | - | chr5_4:10437297-10437316 | Msa0836790:CDS | 50.0% | |
| CCCAGTTTCGTCAATTCAGG+AGG | - | chr5_4:10437569-10437588 | Msa0836790:intron | 50.0% | |
| GCCTCCTGAATTGACGAAAC+TGG | + | chr5_4:10437573-10437592 | None:intergenic | 50.0% | |
| ! | CTCAGAGTCTGTTTCTCCAC+AGG | - | chr5_4:10437656-10437675 | Msa0836790:CDS | 50.0% |
| CCAAGGAGAAGAGGAGTAAG+AGG | + | chr5_4:10437684-10437703 | None:intergenic | 50.0% | |
| CCTCTTACTCCTCTTCTCCT+TGG | - | chr5_4:10437681-10437700 | Msa0836790:CDS | 50.0% | |
| CTTACTCCTCTTCTCCTTGG+CGG | - | chr5_4:10437684-10437703 | Msa0836790:CDS | 50.0% | |
| GGATGAGTTCAGCTCAGCTA+TGG | - | chr5_4:10436356-10436375 | Msa0836790:CDS | 50.0% | |
| GAACTCTGCTGCAAAGGTTG+CGG | + | chr5_4:10436716-10436735 | None:intergenic | 50.0% | |
| AACCTTTGCAGCAGAGTTCC+AGG | - | chr5_4:10436717-10436736 | Msa0836790:intron | 50.0% | |
| TTCCTGGAACTCTGCTGCAA+AGG | + | chr5_4:10436722-10436741 | None:intergenic | 50.0% | |
| GATGCACTTCAACAGCTTGG+TGG | - | chr5_4:10436785-10436804 | Msa0836790:intron | 50.0% | |
| ! | TGTGGGTCTTGTATTGGGTG+GGG | - | chr5_4:10436956-10436975 | Msa0836790:intron | 50.0% |
| CAAGAGTGGGATTCCTGTAG+TGG | + | chr5_4:10437137-10437156 | None:intergenic | 50.0% | |
| TGACCGTACACAGGCTATGT+AGG | - | chr5_4:10437277-10437296 | Msa0836790:CDS | 50.0% | |
| GACCGTACACAGGCTATGTA+GGG | - | chr5_4:10437278-10437297 | Msa0836790:CDS | 50.0% | |
| CACCCTACATAGCCTGTGTA+CGG | + | chr5_4:10437283-10437302 | None:intergenic | 50.0% | |
| AGGGTGTGTATGAGCCTAAC+TGG | - | chr5_4:10437297-10437316 | Msa0836790:CDS | 50.0% | |
| CCCAGTTTCGTCAATTCAGG+AGG | - | chr5_4:10437569-10437588 | Msa0836790:intron | 50.0% | |
| GCCTCCTGAATTGACGAAAC+TGG | + | chr5_4:10437573-10437592 | None:intergenic | 50.0% | |
| ! | CTCAGAGTCTGTTTCTCCAC+AGG | - | chr5_4:10437656-10437675 | Msa0836790:CDS | 50.0% |
| CCAAGGAGAAGAGGAGTAAG+AGG | + | chr5_4:10437684-10437703 | None:intergenic | 50.0% | |
| CCTCTTACTCCTCTTCTCCT+TGG | - | chr5_4:10437681-10437700 | Msa0836790:CDS | 50.0% | |
| CTTACTCCTCTTCTCCTTGG+CGG | - | chr5_4:10437684-10437703 | Msa0836790:CDS | 50.0% | |
| ! | CCAGCACCTCCTTTGTTTCC+TGG | + | chr5_4:10436738-10436757 | None:intergenic | 55.0% |
| ! | CCAGGAAACAAAGGAGGTGC+TGG | - | chr5_4:10436735-10436754 | Msa0836790:intron | 55.0% |
| !! | ACAAAGGAGGTGCTGGTCGT+CGG | - | chr5_4:10436742-10436761 | Msa0836790:intron | 55.0% |
| ! | CAACAGCTTGGTGGAGCACA+TGG | - | chr5_4:10436794-10436813 | Msa0836790:intron | 55.0% |
| ! | GTGGGTCTTGTATTGGGTGG+GGG | - | chr5_4:10436957-10436976 | Msa0836790:intron | 55.0% |
| ! | TGGGTCTTGTATTGGGTGGG+GGG | - | chr5_4:10436958-10436977 | Msa0836790:intron | 55.0% |
| AGAGGAGTAAGAGGACCCTG+TGG | + | chr5_4:10437675-10437694 | None:intergenic | 55.0% | |
| ACAGATCCGCCAAGGAGAAG+AGG | + | chr5_4:10437693-10437712 | None:intergenic | 55.0% | |
| ! | CTCCTTGGCGGATCTGTTCA+AGG | - | chr5_4:10437696-10437715 | Msa0836790:CDS | 55.0% |
| GACCTTGAACAGATCCGCCA+AGG | + | chr5_4:10437701-10437720 | None:intergenic | 55.0% | |
| ! | CCAGCACCTCCTTTGTTTCC+TGG | + | chr5_4:10436738-10436757 | None:intergenic | 55.0% |
| ! | CCAGGAAACAAAGGAGGTGC+TGG | - | chr5_4:10436735-10436754 | Msa0836790:intron | 55.0% |
| !! | ACAAAGGAGGTGCTGGTCGT+CGG | - | chr5_4:10436742-10436761 | Msa0836790:intron | 55.0% |
| ! | CAACAGCTTGGTGGAGCACA+TGG | - | chr5_4:10436794-10436813 | Msa0836790:intron | 55.0% |
| ! | GTGGGTCTTGTATTGGGTGG+GGG | - | chr5_4:10436957-10436976 | Msa0836790:intron | 55.0% |
| ! | TGGGTCTTGTATTGGGTGGG+GGG | - | chr5_4:10436958-10436977 | Msa0836790:intron | 55.0% |
| AGAGGAGTAAGAGGACCCTG+TGG | + | chr5_4:10437675-10437694 | None:intergenic | 55.0% | |
| ACAGATCCGCCAAGGAGAAG+AGG | + | chr5_4:10437693-10437712 | None:intergenic | 55.0% | |
| ! | CTCCTTGGCGGATCTGTTCA+AGG | - | chr5_4:10437696-10437715 | Msa0836790:CDS | 55.0% |
| GACCTTGAACAGATCCGCCA+AGG | + | chr5_4:10437701-10437720 | None:intergenic | 55.0% | |
| CTCTGCTGCAAAGGTTGCGG+CGG | + | chr5_4:10436713-10436732 | None:intergenic | 60.0% | |
| ATTGGGTGGGGGGAGCAATC+TGG | - | chr5_4:10436968-10436987 | Msa0836790:intron | 60.0% | |
| CTCTGCTGCAAAGGTTGCGG+CGG | + | chr5_4:10436713-10436732 | None:intergenic | 60.0% | |
| ATTGGGTGGGGGGAGCAATC+TGG | - | chr5_4:10436968-10436987 | Msa0836790:intron | 60.0% | |
| TGCAAAGGTTGCGGCGGCTG+AGG | + | chr5_4:10436707-10436726 | None:intergenic | 65.0% | |
| TGCAAAGGTTGCGGCGGCTG+AGG | + | chr5_4:10436707-10436726 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 10435940 | 10438105 | 10435940 | ID=Msa0836790;Name=Msa0836790 |
| chr5_4 | mRNA | 10435940 | 10438105 | 10435940 | ID=Msa0836790-mRNA-1;Parent=Msa0836790;Name=Msa0836790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=21|0.75|0.8|1|1|1|5|287|333 |
| chr5_4 | exon | 10435940 | 10436502 | 10435940 | ID=Msa0836790-mRNA-1:exon:4622;Parent=Msa0836790-mRNA-1 |
| chr5_4 | exon | 10436634 | 10436710 | 10436634 | ID=Msa0836790-mRNA-1:exon:4621;Parent=Msa0836790-mRNA-1 |
| chr5_4 | exon | 10437230 | 10437542 | 10437230 | ID=Msa0836790-mRNA-1:exon:4620;Parent=Msa0836790-mRNA-1 |
| chr5_4 | exon | 10437649 | 10437776 | 10437649 | ID=Msa0836790-mRNA-1:exon:4619;Parent=Msa0836790-mRNA-1 |
| chr5_4 | exon | 10437877 | 10438105 | 10437877 | ID=Msa0836790-mRNA-1:exon:4618;Parent=Msa0836790-mRNA-1 |
| chr5_4 | five_prime_UTR | 10438085 | 10438105 | 10438085 | ID=Msa0836790-mRNA-1:five_prime_utr;Parent=Msa0836790-mRNA-1 |
| chr5_4 | CDS | 10437877 | 10438084 | 10437877 | ID=Msa0836790-mRNA-1:cds;Parent=Msa0836790-mRNA-1 |
| chr5_4 | CDS | 10437649 | 10437776 | 10437649 | ID=Msa0836790-mRNA-1:cds;Parent=Msa0836790-mRNA-1 |
| chr5_4 | CDS | 10437230 | 10437542 | 10437230 | ID=Msa0836790-mRNA-1:cds;Parent=Msa0836790-mRNA-1 |
| chr5_4 | CDS | 10436634 | 10436710 | 10436634 | ID=Msa0836790-mRNA-1:cds;Parent=Msa0836790-mRNA-1 |
| chr5_4 | CDS | 10436227 | 10436502 | 10436227 | ID=Msa0836790-mRNA-1:cds;Parent=Msa0836790-mRNA-1 |
| chr5_4 | three_prime_UTR | 10435940 | 10436226 | 10435940 | ID=Msa0836790-mRNA-1:three_prime_utr;Parent=Msa0836790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
