Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0774250 | sp|Q1JPN0|STR7_ARATH | 74.734 | 376 | 80 | 4 | 104 | 472 | 100 | 467 | 0.0 | 586 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0774250 | G7KD73 | 95.198 | 479 | 21 | 2 | 1 | 478 | 1 | 478 | 0.0 | 914 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0656050 | Msa0774250 | 0.815875 | 7.388260e-52 | -8.615850e-47 |
Msa0740610 | Msa0774250 | 0.808251 | 3.394143e-50 | -8.615850e-47 |
Msa0545540 | Msa0774250 | 0.819913 | 9.048345e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0774250 | MtrunA17_Chr5g0428361 | 95.198 | 479 | 21 | 2 | 1 | 478 | 1 | 478 | 0.0 | 914 |
Msa0774250 | MtrunA17_Chr1g0192901 | 27.928 | 333 | 173 | 11 | 110 | 426 | 61 | 342 | 6.68e-27 | 114 |
Msa0774250 | MtrunA17_Chr3g0077981 | 27.697 | 343 | 169 | 16 | 101 | 409 | 92 | 389 | 8.78e-21 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0774250 | AT2G40760.1 | 74.734 | 376 | 80 | 4 | 104 | 472 | 100 | 467 | 0.0 | 586 |
Msa0774250 | AT1G09280.1 | 30.000 | 300 | 148 | 11 | 106 | 388 | 18 | 272 | 4.03e-27 | 115 |
Msa0774250 | AT1G17850.1 | 25.862 | 348 | 204 | 9 | 104 | 439 | 79 | 384 | 1.52e-21 | 97.4 |
Msa0774250 | AT1G17850.2 | 25.788 | 349 | 205 | 9 | 104 | 439 | 79 | 386 | 2.45e-21 | 96.7 |
Find 136 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAACTGGTATTGCATTAT+TGG | 0.180712 | 5_2:-50229769 | None:intergenic |
GATATTGCTCAGCGTGTTTC+AGG | 0.198058 | 5_2:+50231635 | Msa0774250:intron |
GAGACTCCATATTCATATTC+TGG | 0.238512 | 5_2:-50234054 | None:intergenic |
GAATGGTTTACATCATCTTT+TGG | 0.253898 | 5_2:-50232992 | None:intergenic |
TTTCATATATAAGAGTAATT+TGG | 0.256124 | 5_2:+50234423 | Msa0774250:three_prime_UTR |
GAACTTCCTCAAGATATTTC+AGG | 0.259128 | 5_2:-50233894 | None:intergenic |
TTATATATGAAATGTCAAAA+AGG | 0.264365 | 5_2:-50234412 | None:intergenic |
AATAATGCAATACCAGTTTC+TGG | 0.270448 | 5_2:+50229771 | Msa0774250:CDS |
TGAAGAAGAGTGACTTGTTC+TGG | 0.293157 | 5_2:-50229652 | None:intergenic |
GTCGGCCGGCGGCCCTTATC+AGG | 0.294504 | 5_2:-50234171 | None:intergenic |
GAAAGGGTTGGAAAATATAT+TGG | 0.295361 | 5_2:+50232052 | Msa0774250:CDS |
CTTGCGCCTGAAGGAATTAA+TGG | 0.297291 | 5_2:+50231668 | Msa0774250:CDS |
GAAACTGGTATTGCATTATT+GGG | 0.311107 | 5_2:-50229768 | None:intergenic |
ATATAGCAACTCACAGTATC+AGG | 0.337635 | 5_2:-50232106 | None:intergenic |
TTTCAGCACTTTGGTCTGAA+TGG | 0.344568 | 5_2:-50233009 | None:intergenic |
GTTTCTGGGTTGGTTGAATC+TGG | 0.353146 | 5_2:+50229786 | Msa0774250:CDS |
TGCCTCCTCTGAAATGTGTT+AGG | 0.366567 | 5_2:+50234319 | Msa0774250:three_prime_UTR |
CTTGTTCTGGTTTCAGATGA+AGG | 0.370667 | 5_2:-50229639 | None:intergenic |
GATCATAGGTGGTCCTGATA+AGG | 0.376228 | 5_2:+50234158 | Msa0774250:CDS |
TTCCGGAGAGACAAAGCCTT+TGG | 0.383264 | 5_2:+50233914 | Msa0774250:CDS |
GAATCCCCAGAATATGAATA+TGG | 0.387181 | 5_2:+50234048 | Msa0774250:CDS |
TTTCACAGATTGTCACTCTT+GGG | 0.396238 | 5_2:+50232008 | Msa0774250:intron |
CATTTCGTGAATTCCCATCT+TGG | 0.398350 | 5_2:+50232927 | Msa0774250:CDS |
AGGCTGCCATTAATTCCTTC+AGG | 0.403942 | 5_2:-50231674 | None:intergenic |
TGATGGATGGCCTCCTCCTC+AGG | 0.405580 | 5_2:-50231791 | None:intergenic |
CCGCCGGCCGACACGCGAAC+AGG | 0.405736 | 5_2:+50234182 | Msa0774250:CDS |
GCCAGTTCTCCTCTTGCTGC+TGG | 0.408623 | 5_2:+50231833 | Msa0774250:CDS |
ATTTCGTGAATTCCCATCTT+GGG | 0.408789 | 5_2:+50232928 | Msa0774250:CDS |
ACAAGAATAGGAAAGTTTAA+AGG | 0.412243 | 5_2:+50232881 | Msa0774250:CDS |
GGTTGAGGAAGACAAGAATA+TGG | 0.413938 | 5_2:-50229552 | None:intergenic |
TCCCAAAGGCTTTGTCTCTC+CGG | 0.419057 | 5_2:-50233916 | None:intergenic |
GAAATATCTTGAGGAAGTTC+CGG | 0.421592 | 5_2:+50233897 | Msa0774250:CDS |
GCCTCCTCCTCAGGACTGAC+AGG | 0.428234 | 5_2:-50231782 | None:intergenic |
GATTCAACCAACCCAGAAAC+TGG | 0.429345 | 5_2:-50229783 | None:intergenic |
ATTTCAGGATCCCACCTTCC+AGG | 0.429687 | 5_2:-50233879 | None:intergenic |
TCCGGAGAGACAAAGCCTTT+GGG | 0.429789 | 5_2:+50233915 | Msa0774250:CDS |
AGACTCCATATTCATATTCT+GGG | 0.438623 | 5_2:-50234053 | None:intergenic |
GTTCCTGCTGGTTCTGAGAA+TGG | 0.444562 | 5_2:-50229526 | None:intergenic |
ACACGCAAAACAGCATGATC+AGG | 0.448747 | 5_2:-50229858 | None:intergenic |
TTGTTCTGGTTTCAGATGAA+GGG | 0.451842 | 5_2:-50229638 | None:intergenic |
GAAGCAATTATGTCAACAAC+TGG | 0.456268 | 5_2:+50229887 | Msa0774250:CDS |
TCTAAGTGTTTCTCTCACTC+TGG | 0.458193 | 5_2:+50229744 | Msa0774250:CDS |
GCCATCCATCACGGTAATCA+TGG | 0.460795 | 5_2:+50231803 | Msa0774250:CDS |
GCCAGCAGCAAGAGGAGAAC+TGG | 0.462709 | 5_2:-50231834 | None:intergenic |
ATCATAGGTGGTCCTGATAA+GGG | 0.462911 | 5_2:+50234159 | Msa0774250:CDS |
TGTCCTGTTCGCGTGTCGGC+CGG | 0.470775 | 5_2:-50234185 | None:intergenic |
GTAAGAGACAGGAATGGTTG+AGG | 0.481351 | 5_2:-50229567 | None:intergenic |
AGTCTCTGTCGAGCATGGTT+TGG | 0.481467 | 5_2:+50233966 | Msa0774250:CDS |
GGAAATTTCAAGCTGTGCTA+TGG | 0.482226 | 5_2:+50233994 | Msa0774250:CDS |
ATAATGCAATACCAGTTTCT+GGG | 0.482427 | 5_2:+50229772 | Msa0774250:CDS |
AATAACTACGAAACAAGAAT+AGG | 0.483787 | 5_2:+50232869 | Msa0774250:CDS |
CGTGTTGCTATGTATTGCAC+CGG | 0.487043 | 5_2:+50233064 | Msa0774250:CDS |
TTGTTGACATAATTGCTTCA+AGG | 0.488970 | 5_2:-50229883 | None:intergenic |
GATTTCTGTGCAAAACAGTA+AGG | 0.489983 | 5_2:-50234081 | None:intergenic |
GTTGGTTGAATCTGGTGAAA+TGG | 0.493893 | 5_2:+50229794 | Msa0774250:CDS |
AAACGTTCCTCAACCCAAGA+TGG | 0.494304 | 5_2:-50232941 | None:intergenic |
TAGAGTCAAGTTGAAGAAAG+AGG | 0.495217 | 5_2:+50231886 | Msa0774250:CDS |
ACAGAAATCGGAAGAAGAAA+AGG | 0.498292 | 5_2:+50234095 | Msa0774250:CDS |
GCCTGTCAGTCCTGAGGAGG+AGG | 0.498406 | 5_2:+50231781 | Msa0774250:CDS |
TGAATTCCCATCTTGGGTTG+AGG | 0.500420 | 5_2:+50232934 | Msa0774250:CDS |
TGTTGACATAATTGCTTCAA+GGG | 0.509904 | 5_2:-50229882 | None:intergenic |
TGCAATACCAGTTTCTGGGT+TGG | 0.517873 | 5_2:+50229776 | Msa0774250:CDS |
GAGTGTTGGAGAATAGAGAG+AGG | 0.522244 | 5_2:-50229698 | None:intergenic |
GCGAAGACGCACCTTTCCGA+TGG | 0.523018 | 5_2:+50231855 | Msa0774250:CDS |
TACGGTATCACCTATTGAAA+GGG | 0.523518 | 5_2:+50232036 | Msa0774250:CDS |
CATTCCTGTCTCTTACTACA+AGG | 0.527397 | 5_2:+50229574 | Msa0774250:CDS |
ATGCGGTACGCGGGAGTCGG+TGG | 0.527902 | 5_2:+50231697 | Msa0774250:CDS |
CAGAGTGATGATCGTCTGAA+GGG | 0.529530 | 5_2:+50231740 | Msa0774250:CDS |
GCATCCTTGTAGTAAGAGAC+AGG | 0.534767 | 5_2:-50229578 | None:intergenic |
CTACGGTATCACCTATTGAA+AGG | 0.535558 | 5_2:+50232035 | Msa0774250:CDS |
GCGAACAGGACAGTGCTAGC+AGG | 0.538298 | 5_2:+50234196 | Msa0774250:CDS |
GTCGAGCATGGTTTGGCACA+AGG | 0.543196 | 5_2:+50233973 | Msa0774250:CDS |
AGAATATGGTATGTTCCTGC+TGG | 0.544026 | 5_2:-50229538 | None:intergenic |
AACGTTCCTCAACCCAAGAT+GGG | 0.545143 | 5_2:-50232940 | None:intergenic |
TCACGAAATGATGTCGTACA+AGG | 0.547018 | 5_2:-50232914 | None:intergenic |
GTATCACCTATTGAAAGGGT+TGG | 0.547522 | 5_2:+50232040 | Msa0774250:CDS |
AATATATTGGCGCAAAGGAG+TGG | 0.547772 | 5_2:+50232065 | Msa0774250:CDS |
TCCTAGGTTTATCACCTGGA+AGG | 0.548476 | 5_2:+50233865 | Msa0774250:intron |
CCTATGCGGTACGCGGGAGT+CGG | 0.548913 | 5_2:+50231694 | Msa0774250:CDS |
TGTTCTGGTTTCAGATGAAG+GGG | 0.549136 | 5_2:-50229637 | None:intergenic |
TAGGTTTATCACCTGGAAGG+TGG | 0.549898 | 5_2:+50233868 | Msa0774250:intron |
TGAAATGGAATCTCTTGTTG+TGG | 0.554918 | 5_2:+50229809 | Msa0774250:CDS |
TCCATGATTACCGTGATGGA+TGG | 0.555016 | 5_2:-50231804 | None:intergenic |
CTGTGCAAAACAGTAAGGAC+AGG | 0.555519 | 5_2:-50234076 | None:intergenic |
GTGTTGCTATGTATTGCACC+GGG | 0.561647 | 5_2:+50233065 | Msa0774250:CDS |
GCGTCTTCGCCAGCAGCAAG+AGG | 0.564376 | 5_2:-50231842 | None:intergenic |
GGTATCATTCTTGCGCCTGA+AGG | 0.564695 | 5_2:+50231659 | Msa0774250:CDS |
GCCTGTGAGTGATGCTGACA+TGG | 0.565387 | 5_2:+50234026 | Msa0774250:CDS |
TCAAGTCTACTTCTTAGCAA+AGG | 0.568146 | 5_2:+50233109 | Msa0774250:CDS |
AGGTTTATCACCTGGAAGGT+GGG | 0.568395 | 5_2:+50233869 | Msa0774250:intron |
GTTGAAGAAGATGAAGATGA+TGG | 0.571193 | 5_2:-50229612 | None:intergenic |
TCCATGTCAGCATCACTCAC+AGG | 0.575383 | 5_2:-50234027 | None:intergenic |
CCTGTTCGCGTGTCGGCCGG+CGG | 0.578594 | 5_2:-50234182 | None:intergenic |
CGAACAGGACAGTGCTAGCA+GGG | 0.586047 | 5_2:+50234197 | Msa0774250:CDS |
TCAGAGTGATGATCGTCTGA+AGG | 0.589849 | 5_2:+50231739 | Msa0774250:CDS |
CCGACTCCCGCGTACCGCAT+AGG | 0.593832 | 5_2:-50231694 | None:intergenic |
GCTTTGAAGAGAATGAGTGT+TGG | 0.594168 | 5_2:-50229712 | None:intergenic |
GCACTGTCCTGTTCGCGTGT+CGG | 0.595459 | 5_2:-50234189 | None:intergenic |
CACGCAAAACAGCATGATCA+GGG | 0.597142 | 5_2:-50229857 | None:intergenic |
CCTCCATTCTCAGAACCAGC+AGG | 0.599405 | 5_2:+50229523 | Msa0774250:CDS |
AATTTCCTAGGTTTATCACC+TGG | 0.599744 | 5_2:+50233861 | Msa0774250:intron |
GTGGTCCTGATAAGGGCCGC+CGG | 0.600523 | 5_2:+50234166 | Msa0774250:CDS |
AAGAGAGTCTCTGTCGAGCA+TGG | 0.601409 | 5_2:+50233961 | Msa0774250:CDS |
ATCGGAAGAAGAAAAGGAGA+GGG | 0.608676 | 5_2:+50234101 | Msa0774250:CDS |
TGTCACTCTTGGGATGCCTA+CGG | 0.608920 | 5_2:+50232018 | Msa0774250:CDS |
TGGGATCCTGAAATATCTTG+AGG | 0.610854 | 5_2:+50233888 | Msa0774250:CDS |
TGACTCTAACATGATCCCAT+CGG | 0.612610 | 5_2:-50231871 | None:intergenic |
CGAAGACGCACCTTTCCGAT+GGG | 0.613239 | 5_2:+50231856 | Msa0774250:CDS |
TCTTAGCAAAGGTTTCAAAG+AGG | 0.616788 | 5_2:+50233120 | Msa0774250:CDS |
GGAGAGACAAAGCCTTTGGG+AGG | 0.617199 | 5_2:+50233918 | Msa0774250:CDS |
GACTCCATATTCATATTCTG+GGG | 0.618092 | 5_2:-50234052 | None:intergenic |
ATGGAGGCTGCATTTAGATG+TGG | 0.618896 | 5_2:-50229507 | None:intergenic |
GAGAGACAAAGCCTTTGGGA+GGG | 0.620781 | 5_2:+50233919 | Msa0774250:CDS |
CAAAGCACTCTCCCTCCCAA+AGG | 0.622495 | 5_2:-50233930 | None:intergenic |
TGGCAGCCTATGCGGTACGC+GGG | 0.626777 | 5_2:+50231688 | Msa0774250:CDS |
GGAATTAATGGCAGCCTATG+CGG | 0.628077 | 5_2:+50231680 | Msa0774250:CDS |
ATTGCTCAGCGTGTTTCAGG+CGG | 0.630807 | 5_2:+50231638 | Msa0774250:intron |
TTTCTCACAACGAATACCCC+CGG | 0.636565 | 5_2:-50233083 | None:intergenic |
TGGAAAATATATTGGCGCAA+AGG | 0.638349 | 5_2:+50232060 | Msa0774250:CDS |
CTCCTAACACATTTCAGAGG+AGG | 0.640055 | 5_2:-50234321 | None:intergenic |
CCTGCTGGTTCTGAGAATGG+AGG | 0.640153 | 5_2:-50229523 | None:intergenic |
GAGGAGGAGGCCATCCATCA+CGG | 0.641644 | 5_2:+50231794 | Msa0774250:CDS |
CTAACATGATCCCATCGGAA+AGG | 0.650816 | 5_2:-50231866 | None:intergenic |
ATCGCCTGTCAGTCCTGAGG+AGG | 0.650831 | 5_2:+50231778 | Msa0774250:CDS |
ATGGCAGCCTATGCGGTACG+CGG | 0.651154 | 5_2:+50231687 | Msa0774250:CDS |
TGTGTCCATGATTACCGTGA+TGG | 0.656638 | 5_2:-50231808 | None:intergenic |
AGAGTGATGATCGTCTGAAG+GGG | 0.657846 | 5_2:+50231741 | Msa0774250:CDS |
AATCGGAAGAAGAAAAGGAG+AGG | 0.663172 | 5_2:+50234100 | Msa0774250:CDS |
GCACTCCTAACACATTTCAG+AGG | 0.667563 | 5_2:-50234324 | None:intergenic |
GTTGCTATGTATTGCACCGG+GGG | 0.674693 | 5_2:+50233067 | Msa0774250:CDS |
CTTGTAGTAAGAGACAGGAA+TGG | 0.678677 | 5_2:-50229573 | None:intergenic |
TGAATCGCCTGTCAGTCCTG+AGG | 0.683044 | 5_2:+50231775 | Msa0774250:CDS |
TGCAGGTGGTAATTGATGTG+CGG | 0.683900 | 5_2:+50232846 | Msa0774250:intron |
CTTTCAATAGGTGATACCGT+AGG | 0.713249 | 5_2:-50232034 | None:intergenic |
GTGCAATACATAGCAACACG+TGG | 0.725901 | 5_2:-50233061 | None:intergenic |
TGTTGCTATGTATTGCACCG+GGG | 0.728200 | 5_2:+50233066 | Msa0774250:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTCATGTATATATTTTT+TGG | + | chr5_2:50230787-50230806 | Msa0774250:intron | 10.0% |
!! | CAAAACAAAATAAAATTTAA+AGG | - | chr5_2:50233154-50233173 | None:intergenic | 10.0% |
!!! | TTATTACATTTTTGTAATTC+AGG | + | chr5_2:50230611-50230630 | Msa0774250:intron | 15.0% |
!!! | GTTTTTTAATCTTCATTATA+AGG | + | chr5_2:50232142-50232161 | Msa0774250:intron | 15.0% |
!!! | AATTTTAAAACTTTTTGATC+TGG | + | chr5_2:50232402-50232421 | Msa0774250:intron | 15.0% |
!!! | TAAACATATTTTAACTGATA+TGG | + | chr5_2:50233271-50233290 | Msa0774250:intron | 15.0% |
!! | TATATATGAAATGTCAAAAA+GGG | - | chr5_2:50234414-50234433 | None:intergenic | 15.0% |
!! | TTATATATGAAATGTCAAAA+AGG | - | chr5_2:50234415-50234434 | None:intergenic | 15.0% |
!! | ACTTTCAAAATATCAAACAT+AGG | + | chr5_2:50230016-50230035 | Msa0774250:intron | 20.0% |
!! | CTTTCAAAATATCAAACATA+GGG | + | chr5_2:50230017-50230036 | Msa0774250:intron | 20.0% |
!! | ATACACATAGTGATAATTTA+GGG | + | chr5_2:50230583-50230602 | Msa0774250:intron | 20.0% |
!!! | TATAGTTAGGTTTTAAGTTA+TGG | + | chr5_2:50231066-50231085 | Msa0774250:intron | 20.0% |
!! | TAAAATGTGGATTTATATCA+TGG | + | chr5_2:50232311-50232330 | Msa0774250:intron | 20.0% |
!! | AAAATGTGGATTTATATCAT+GGG | + | chr5_2:50232312-50232331 | Msa0774250:intron | 20.0% |
!! | TGAATAGAACTTAATTTACA+TGG | + | chr5_2:50232701-50232720 | Msa0774250:intron | 20.0% |
!! | GAATAGAACTTAATTTACAT+GGG | + | chr5_2:50232702-50232721 | Msa0774250:intron | 20.0% |
!! | ACTTTGACATATAGAAAATT+AGG | + | chr5_2:50232751-50232770 | Msa0774250:intron | 20.0% |
!! | CTTTGACATATAGAAAATTA+GGG | + | chr5_2:50232752-50232771 | Msa0774250:intron | 20.0% |
!!! | TATTTTAACTGATATGGAAA+TGG | + | chr5_2:50233277-50233296 | Msa0774250:intron | 20.0% |
!!! | ATTTTAACTGATATGGAAAT+GGG | + | chr5_2:50233278-50233297 | Msa0774250:intron | 20.0% |
!! | TAAATAGCACATTAAAAACA+AGG | - | chr5_2:50233692-50233711 | None:intergenic | 20.0% |
!!! | TTTTTGGTTACAATTTTTAC+TGG | + | chr5_2:50233806-50233825 | Msa0774250:intron | 20.0% |
!!! | TTTTGGTTACAATTTTTACT+GGG | + | chr5_2:50233807-50233826 | Msa0774250:intron | 20.0% |
!!! | GTACGTTAAACTTTTAAAAA+TGG | + | chr5_2:50234357-50234376 | Msa0774250:three_prime_UTR | 20.0% |
! | AAAAATAAGTCAATCCAAAC+AGG | - | chr5_2:50230043-50230062 | None:intergenic | 25.0% |
! | TATTATTCATAAGCTTGTCA+AGG | + | chr5_2:50230108-50230127 | Msa0774250:intron | 25.0% |
!! | TAGGGTTATATTTAGAGTTA+AGG | + | chr5_2:50230337-50230356 | Msa0774250:intron | 25.0% |
! | GATACACATAGTGATAATTT+AGG | + | chr5_2:50230582-50230601 | Msa0774250:intron | 25.0% |
! | TTTAGTATTAGTGAAGGTTA+TGG | + | chr5_2:50230958-50230977 | Msa0774250:intron | 25.0% |
! | TACCATTTACATATATGAAC+TGG | + | chr5_2:50230990-50231009 | Msa0774250:intron | 25.0% |
! | TATTGCAAGAACATAAATTG+CGG | + | chr5_2:50231157-50231176 | Msa0774250:intron | 25.0% |
! | TACGTACAAATAACTTAACT+TGG | + | chr5_2:50231972-50231991 | Msa0774250:intron | 25.0% |
! | AGTTGCTATATTCCTATTAT+CGG | + | chr5_2:50232118-50232137 | Msa0774250:intron | 25.0% |
! | GATTAAAAAACACCGATAAT+AGG | - | chr5_2:50232133-50232152 | None:intergenic | 25.0% |
!!! | CTTGAGAGTGTTAAATATTT+AGG | + | chr5_2:50232234-50232253 | Msa0774250:intron | 25.0% |
!! | TTTCTAGTGTTGTTAAATAG+AGG | + | chr5_2:50232464-50232483 | Msa0774250:intron | 25.0% |
! | ACATATAGAAAATTAGGGAA+GGG | + | chr5_2:50232757-50232776 | Msa0774250:intron | 25.0% |
! | AATAACTACGAAACAAGAAT+AGG | + | chr5_2:50232869-50232888 | Msa0774250:CDS | 25.0% |
! | ACAAGAATAGGAAAGTTTAA+AGG | + | chr5_2:50232881-50232900 | Msa0774250:CDS | 25.0% |
! | CATTTGATGCAAAAATCATT+TGG | + | chr5_2:50233187-50233206 | Msa0774250:intron | 25.0% |
! | GCATTTAGAAATTGGTTAAT+TGG | - | chr5_2:50233402-50233421 | None:intergenic | 25.0% |
! | ATTAACCAATTTCTAAATGC+TGG | + | chr5_2:50233402-50233421 | Msa0774250:intron | 25.0% |
!! | TGATTTAAGATAAATCTGTG+AGG | - | chr5_2:50233453-50233472 | None:intergenic | 25.0% |
! | TCACAGATTTATCTTAAATC+AGG | + | chr5_2:50233452-50233471 | Msa0774250:intron | 25.0% |
!! | TATCTTAAATCAGGATCTTT+TGG | + | chr5_2:50233461-50233480 | Msa0774250:intron | 25.0% |
! | TAAACTTATGAGTGTTTGAT+AGG | - | chr5_2:50233525-50233544 | None:intergenic | 25.0% |
! | TCAAACACTCATAAGTTTAT+AGG | + | chr5_2:50233526-50233545 | Msa0774250:intron | 25.0% |
!!! | GAACAAGATTTGTTAGTTTT+TGG | + | chr5_2:50233790-50233809 | Msa0774250:intron | 25.0% |
! | ATTCTGTTTGAAAATTTCCT+AGG | + | chr5_2:50233849-50233868 | Msa0774250:intron | 25.0% |
! | ACAAAAACAATTTGAGAGAT+GGG | + | chr5_2:50234134-50234153 | Msa0774250:CDS | 25.0% |
GAAACTGGTATTGCATTATT+GGG | - | chr5_2:50229771-50229790 | None:intergenic | 30.0% | |
AGAAACTGGTATTGCATTAT+TGG | - | chr5_2:50229772-50229791 | None:intergenic | 30.0% | |
AATAATGCAATACCAGTTTC+TGG | + | chr5_2:50229771-50229790 | Msa0774250:CDS | 30.0% | |
ATAATGCAATACCAGTTTCT+GGG | + | chr5_2:50229772-50229791 | Msa0774250:CDS | 30.0% | |
! | GGTTTCGTTTTATAAGTTTG+CGG | + | chr5_2:50229830-50229849 | Msa0774250:CDS | 30.0% |
TGTTGACATAATTGCTTCAA+GGG | - | chr5_2:50229885-50229904 | None:intergenic | 30.0% | |
TTGTTGACATAATTGCTTCA+AGG | - | chr5_2:50229886-50229905 | None:intergenic | 30.0% | |
AATTCTAGCAGGAACATTAT+GGG | - | chr5_2:50230261-50230280 | None:intergenic | 30.0% | |
AAATTCTAGCAGGAACATTA+TGG | - | chr5_2:50230262-50230281 | None:intergenic | 30.0% | |
! | GGTTATATTTAGAGTTAAGG+AGG | + | chr5_2:50230340-50230359 | Msa0774250:intron | 30.0% |
! | TATATTTAGAGTTAAGGAGG+TGG | + | chr5_2:50230343-50230362 | Msa0774250:intron | 30.0% |
GATCCAAGTCATTGTTAATT+AGG | - | chr5_2:50230439-50230458 | None:intergenic | 30.0% | |
! | TGTGTATCTGTATGGATTTT+GGG | - | chr5_2:50230570-50230589 | None:intergenic | 30.0% |
! | ATGTGTATCTGTATGGATTT+TGG | - | chr5_2:50230571-50230590 | None:intergenic | 30.0% |
TATCACTATGTGTATCTGTA+TGG | - | chr5_2:50230578-50230597 | None:intergenic | 30.0% | |
TTGTAATTCAGGTACCAAAT+AGG | + | chr5_2:50230622-50230641 | Msa0774250:intron | 30.0% | |
ATAAGACTAAATCTTCAAGC+TGG | - | chr5_2:50230751-50230770 | None:intergenic | 30.0% | |
CTAAAATGAACAAAACACTG+TGG | - | chr5_2:50230922-50230941 | None:intergenic | 30.0% | |
!! | CAGTGTTTTGTTCATTTTAG+AGG | + | chr5_2:50230922-50230941 | Msa0774250:intron | 30.0% |
TCCATCTTTAGTATTAGTGA+AGG | + | chr5_2:50230952-50230971 | Msa0774250:intron | 30.0% | |
ACCTTCACTAATACTAAAGA+TGG | - | chr5_2:50230956-50230975 | None:intergenic | 30.0% | |
TGCCAGTTCATATATGTAAA+TGG | - | chr5_2:50230995-50231014 | None:intergenic | 30.0% | |
ATAAATTGCGGTTGAAATTG+TGG | + | chr5_2:50231169-50231188 | Msa0774250:intron | 30.0% | |
GTTGAAATTGTGGTTATTGT+GGG | + | chr5_2:50231179-50231198 | Msa0774250:intron | 30.0% | |
!! | TGGTCTCTTAATTGATTTGA+CGG | - | chr5_2:50231263-50231282 | None:intergenic | 30.0% |
! | GTATATTTTCGAATCTGTTG+TGG | + | chr5_2:50231321-50231340 | Msa0774250:intron | 30.0% |
! | AACAAAGTAGTTCAGTCTTT+TGG | - | chr5_2:50231928-50231947 | None:intergenic | 30.0% |
! | TATTTTCCAACCCTTTCAAT+AGG | - | chr5_2:50232049-50232068 | None:intergenic | 30.0% |
GAAAGGGTTGGAAAATATAT+TGG | + | chr5_2:50232052-50232071 | Msa0774250:CDS | 30.0% | |
ATTCACGTTTAAATTCTGCA+GGG | - | chr5_2:50232195-50232214 | None:intergenic | 30.0% | |
!!! | ATGGGTTTTCTAGCTAAAAA+TGG | + | chr5_2:50232330-50232349 | Msa0774250:intron | 30.0% |
!!! | TGGGTTTTCTAGCTAAAAAT+GGG | + | chr5_2:50232331-50232350 | Msa0774250:intron | 30.0% |
! | TTTGCAAGCTCTAATATTGA+AGG | + | chr5_2:50232364-50232383 | Msa0774250:intron | 30.0% |
TTGTTAAATAGAGGCTATGT+AGG | + | chr5_2:50232473-50232492 | Msa0774250:intron | 30.0% | |
GATTATTACTCCACTTTGTA+AGG | + | chr5_2:50232652-50232671 | Msa0774250:intron | 30.0% | |
AAATTCCAATCCTTACAAAG+TGG | - | chr5_2:50232665-50232684 | None:intergenic | 30.0% | |
GACATATAGAAAATTAGGGA+AGG | + | chr5_2:50232756-50232775 | Msa0774250:intron | 30.0% | |
! | CAATGAAAATTTTGCACTTC+TGG | - | chr5_2:50232809-50232828 | None:intergenic | 30.0% |
! | GAATGGTTTACATCATCTTT+TGG | - | chr5_2:50232995-50233014 | None:intergenic | 30.0% |
TGAATTTGCGTATTAACAAG+TGG | - | chr5_2:50233249-50233268 | None:intergenic | 30.0% | |
AAATATAAGTAGCTTCTGCT+TGG | + | chr5_2:50233337-50233356 | Msa0774250:intron | 30.0% | |
AATATAAGTAGCTTCTGCTT+GGG | + | chr5_2:50233338-50233357 | Msa0774250:intron | 30.0% | |
AGATAAATCTGTGAGGAAAT+GGG | - | chr5_2:50233446-50233465 | None:intergenic | 30.0% | |
AAGATAAATCTGTGAGGAAA+TGG | - | chr5_2:50233447-50233466 | None:intergenic | 30.0% | |
! | ATGAGTGTTTGATAGGTTTT+TGG | - | chr5_2:50233518-50233537 | None:intergenic | 30.0% |
AGACTCCATATTCATATTCT+GGG | - | chr5_2:50234056-50234075 | None:intergenic | 30.0% | |
! | TTACTGTTTTGCACAGAAAT+CGG | + | chr5_2:50234083-50234102 | Msa0774250:CDS | 30.0% |
GACAAAAACAATTTGAGAGA+TGG | + | chr5_2:50234133-50234152 | Msa0774250:CDS | 30.0% | |
CAAAAACAATTTGAGAGATG+GGG | + | chr5_2:50234135-50234154 | Msa0774250:CDS | 30.0% | |
AAAAACAATTTGAGAGATGG+GGG | + | chr5_2:50234136-50234155 | Msa0774250:CDS | 30.0% | |
GTTGAAGAAGATGAAGATGA+TGG | - | chr5_2:50229615-50229634 | None:intergenic | 35.0% | |
!! | TTGTTCTGGTTTCAGATGAA+GGG | - | chr5_2:50229641-50229660 | None:intergenic | 35.0% |
! | GGTTTTTGAATGAAGGGTTA+GGG | - | chr5_2:50229680-50229699 | None:intergenic | 35.0% |
! | AGGTTTTTGAATGAAGGGTT+AGG | - | chr5_2:50229681-50229700 | None:intergenic | 35.0% |
! | GAGAGAGGTTTTTGAATGAA+GGG | - | chr5_2:50229686-50229705 | None:intergenic | 35.0% |
! | AGAGAGAGGTTTTTGAATGA+AGG | - | chr5_2:50229687-50229706 | None:intergenic | 35.0% |
TGAAATGGAATCTCTTGTTG+TGG | + | chr5_2:50229809-50229828 | Msa0774250:CDS | 35.0% | |
GAAGCAATTATGTCAACAAC+TGG | + | chr5_2:50229887-50229906 | Msa0774250:CDS | 35.0% | |
AAAAACTAAGCCAATCCAAC+AGG | + | chr5_2:50230234-50230253 | Msa0774250:intron | 35.0% | |
AAAACTAAGCCAATCCAACA+GGG | + | chr5_2:50230235-50230254 | Msa0774250:intron | 35.0% | |
AGTCATTGTTAATTAGGCCT+GGG | - | chr5_2:50230433-50230452 | None:intergenic | 35.0% | |
AAGTCATTGTTAATTAGGCC+TGG | - | chr5_2:50230434-50230453 | None:intergenic | 35.0% | |
AGGCCTAATTAACAATGACT+TGG | + | chr5_2:50230433-50230452 | Msa0774250:intron | 35.0% | |
GAGACTAACTTGACAGATTA+CGG | + | chr5_2:50230663-50230682 | Msa0774250:intron | 35.0% | |
AATGAACAAAACACTGTGGT+GGG | - | chr5_2:50230918-50230937 | None:intergenic | 35.0% | |
AAATGAACAAAACACTGTGG+TGG | - | chr5_2:50230919-50230938 | None:intergenic | 35.0% | |
! | GGCATATTTCCTTTTGTCAT+AGG | + | chr5_2:50231011-50231030 | Msa0774250:intron | 35.0% |
TGGTTATGTTGTGAATCTTG+TGG | + | chr5_2:50231086-50231105 | Msa0774250:intron | 35.0% | |
TGTTGTGAATCTTGTGGTTA+TGG | + | chr5_2:50231092-50231111 | Msa0774250:intron | 35.0% | |
GGTTGAAATTGTGGTTATTG+TGG | + | chr5_2:50231178-50231197 | Msa0774250:intron | 35.0% | |
ATTCTTGCATTGAGCTACAT+GGG | - | chr5_2:50231212-50231231 | None:intergenic | 35.0% | |
AATTCTTGCATTGAGCTACA+TGG | - | chr5_2:50231213-50231232 | None:intergenic | 35.0% | |
ATGTAGCTCAATGCAAGAAT+TGG | + | chr5_2:50231212-50231231 | Msa0774250:intron | 35.0% | |
TGTAGCTCAATGCAAGAATT+GGG | + | chr5_2:50231213-50231232 | Msa0774250:intron | 35.0% | |
AGATATAAGATCGAGACTGT+AGG | - | chr5_2:50231382-50231401 | None:intergenic | 35.0% | |
!!! | ACAGTACACACTTTTTCAGT+TGG | + | chr5_2:50231413-50231432 | Msa0774250:intron | 35.0% |
!!! | TACACACTTTTTCAGTTGGA+GGG | + | chr5_2:50231417-50231436 | Msa0774250:intron | 35.0% |
!! | TAGAGTCAAGTTGAAGAAAG+AGG | + | chr5_2:50231886-50231905 | Msa0774250:CDS | 35.0% |
! | TTTTCACAGATTGTCACTCT+TGG | + | chr5_2:50232007-50232026 | Msa0774250:intron | 35.0% |
TTTCACAGATTGTCACTCTT+GGG | + | chr5_2:50232008-50232027 | Msa0774250:intron | 35.0% | |
TACGGTATCACCTATTGAAA+GGG | + | chr5_2:50232036-50232055 | Msa0774250:CDS | 35.0% | |
TGGAAAATATATTGGCGCAA+AGG | + | chr5_2:50232060-50232079 | Msa0774250:CDS | 35.0% | |
ATATAGCAACTCACAGTATC+AGG | - | chr5_2:50232109-50232128 | None:intergenic | 35.0% | |
CATTCACGTTTAAATTCTGC+AGG | - | chr5_2:50232196-50232215 | None:intergenic | 35.0% | |
CTGCAGAATTTAAACGTGAA+TGG | + | chr5_2:50232194-50232213 | Msa0774250:intron | 35.0% | |
!! | CGTGAATGGCTTAATTTGTT+TGG | + | chr5_2:50232208-50232227 | Msa0774250:intron | 35.0% |
! | TGTTTTGCGATGCACTATAT+TGG | + | chr5_2:50232539-50232558 | Msa0774250:intron | 35.0% |
!! | TGCACTATATTGGTTCTAAC+AGG | + | chr5_2:50232549-50232568 | Msa0774250:intron | 35.0% |
TTACTCCACTTTGTAAGGAT+TGG | + | chr5_2:50232657-50232676 | Msa0774250:intron | 35.0% | |
ATTTCGTGAATTCCCATCTT+GGG | + | chr5_2:50232928-50232947 | Msa0774250:CDS | 35.0% | |
!!! | TCGTTTCTTTTTCAGCACTT+TGG | - | chr5_2:50233021-50233040 | None:intergenic | 35.0% |
TCAAGTCTACTTCTTAGCAA+AGG | + | chr5_2:50233109-50233128 | Msa0774250:CDS | 35.0% | |
TCTTAGCAAAGGTTTCAAAG+AGG | + | chr5_2:50233120-50233139 | Msa0774250:CDS | 35.0% | |
TGCGTATTAACAAGTGGAAA+CGG | - | chr5_2:50233243-50233262 | None:intergenic | 35.0% | |
TCATACCAAACTCTTGTCTT+CGG | - | chr5_2:50233315-50233334 | None:intergenic | 35.0% | |
CTACTCCAGCATTTAGAAAT+TGG | - | chr5_2:50233410-50233429 | None:intergenic | 35.0% | |
!!! | GTTTGATAGGTTTTTGGCAT+CGG | - | chr5_2:50233512-50233531 | None:intergenic | 35.0% |
TGTCTTCGCATATCTACTTT+CGG | + | chr5_2:50233592-50233611 | Msa0774250:intron | 35.0% | |
AATTTCCTAGGTTTATCACC+TGG | + | chr5_2:50233861-50233880 | Msa0774250:intron | 35.0% | |
GAACTTCCTCAAGATATTTC+AGG | - | chr5_2:50233897-50233916 | None:intergenic | 35.0% | |
GAAATATCTTGAGGAAGTTC+CGG | + | chr5_2:50233897-50233916 | Msa0774250:CDS | 35.0% | |
GAATCCCCAGAATATGAATA+TGG | + | chr5_2:50234048-50234067 | Msa0774250:CDS | 35.0% | |
GACTCCATATTCATATTCTG+GGG | - | chr5_2:50234055-50234074 | None:intergenic | 35.0% | |
GAGACTCCATATTCATATTC+TGG | - | chr5_2:50234057-50234076 | None:intergenic | 35.0% | |
GATTTCTGTGCAAAACAGTA+AGG | - | chr5_2:50234084-50234103 | None:intergenic | 35.0% | |
ACAGAAATCGGAAGAAGAAA+AGG | + | chr5_2:50234095-50234114 | Msa0774250:CDS | 35.0% | |
AGAATATGGTATGTTCCTGC+TGG | - | chr5_2:50229541-50229560 | None:intergenic | 40.0% | |
GGTTGAGGAAGACAAGAATA+TGG | - | chr5_2:50229555-50229574 | None:intergenic | 40.0% | |
CTTGTAGTAAGAGACAGGAA+TGG | - | chr5_2:50229576-50229595 | None:intergenic | 40.0% | |
CATTCCTGTCTCTTACTACA+AGG | + | chr5_2:50229574-50229593 | Msa0774250:CDS | 40.0% | |
!! | TGTTCTGGTTTCAGATGAAG+GGG | - | chr5_2:50229640-50229659 | None:intergenic | 40.0% |
!! | CTTGTTCTGGTTTCAGATGA+AGG | - | chr5_2:50229642-50229661 | None:intergenic | 40.0% |
!! | TGAAGAAGAGTGACTTGTTC+TGG | - | chr5_2:50229655-50229674 | None:intergenic | 40.0% |
!! | GCTTTGAAGAGAATGAGTGT+TGG | - | chr5_2:50229715-50229734 | None:intergenic | 40.0% |
TCTAAGTGTTTCTCTCACTC+TGG | + | chr5_2:50229744-50229763 | Msa0774250:CDS | 40.0% | |
GTTGGTTGAATCTGGTGAAA+TGG | + | chr5_2:50229794-50229813 | Msa0774250:CDS | 40.0% | |
TATCAAACATAGGGCCTGTT+TGG | + | chr5_2:50230026-50230045 | Msa0774250:intron | 40.0% | |
ATGTTCCTGCTAGAATTTGC+AGG | + | chr5_2:50230264-50230283 | Msa0774250:intron | 40.0% | |
TGTTCCTGCTAGAATTTGCA+GGG | + | chr5_2:50230265-50230284 | Msa0774250:intron | 40.0% | |
TTAGAGTTAAGGAGGTGGAT+CGG | + | chr5_2:50230348-50230367 | Msa0774250:intron | 40.0% | |
AATTAGGCCTGGGAAAATCA+AGG | - | chr5_2:50230423-50230442 | None:intergenic | 40.0% | |
AGTTGTTCCTTTGCAGACTT+TGG | + | chr5_2:50230461-50230480 | Msa0774250:intron | 40.0% | |
GTTGTTCCTTTGCAGACTTT+GGG | + | chr5_2:50230462-50230481 | Msa0774250:intron | 40.0% | |
! | CTCAGCTTCCATATGGATTA+GGG | + | chr5_2:50230532-50230551 | Msa0774250:intron | 40.0% |
!! | TCAGCTTCCATATGGATTAG+GGG | + | chr5_2:50230533-50230552 | Msa0774250:intron | 40.0% |
ATTCAGGTACCAAATAGGAG+AGG | + | chr5_2:50230627-50230646 | Msa0774250:intron | 40.0% | |
TTCAGGTACCAAATAGGAGA+GGG | + | chr5_2:50230628-50230647 | Msa0774250:intron | 40.0% | |
GGAACATCACCTATGACAAA+AGG | - | chr5_2:50231023-50231042 | None:intergenic | 40.0% | |
! | GGTGATGTTCCTTTTGTCAT+AGG | + | chr5_2:50231032-50231051 | Msa0774250:intron | 40.0% |
! | TGTTCCTTTTGTCATAGGTG+AGG | + | chr5_2:50231037-50231056 | Msa0774250:intron | 40.0% |
GGTGAGGTCTGTATATAGTT+AGG | + | chr5_2:50231053-50231072 | Msa0774250:intron | 40.0% | |
TGTGAATCTTGTGGTTATGG+TGG | + | chr5_2:50231095-50231114 | Msa0774250:intron | 40.0% | |
AGTCTACAGTCTACACAACT+GGG | - | chr5_2:50231131-50231150 | None:intergenic | 40.0% | |
TAGTCTACAGTCTACACAAC+TGG | - | chr5_2:50231132-50231151 | None:intergenic | 40.0% | |
ATTGTGGTTATTGTGGGCTT+TGG | + | chr5_2:50231185-50231204 | Msa0774250:intron | 40.0% | |
TTCTTGCATTGAGCTACATG+GGG | - | chr5_2:50231211-50231230 | None:intergenic | 40.0% | |
GATCTTCGTCAAACGGTTTA+TGG | - | chr5_2:50231283-50231302 | None:intergenic | 40.0% | |
ACCGTTTGACGAAGATCAAA+TGG | + | chr5_2:50231286-50231305 | Msa0774250:intron | 40.0% | |
GCCATTTGATCTTCGTCAAA+CGG | - | chr5_2:50231290-50231309 | None:intergenic | 40.0% | |
ATAAGATCGAGACTGTAGGT+AGG | - | chr5_2:50231378-50231397 | None:intergenic | 40.0% | |
!!! | GTACACACTTTTTCAGTTGG+AGG | + | chr5_2:50231416-50231435 | Msa0774250:intron | 40.0% |
ACCATGATTGTCTACTGCAT+TGG | - | chr5_2:50231463-50231482 | None:intergenic | 40.0% | |
CAAGGACTCAAATTGCAAAC+TGG | - | chr5_2:50231541-50231560 | None:intergenic | 40.0% | |
CAGTTTGCAATTTGAGTCCT+TGG | + | chr5_2:50231539-50231558 | Msa0774250:intron | 40.0% | |
TTAATGCACTATGTCGACCA+AGG | - | chr5_2:50231559-50231578 | None:intergenic | 40.0% | |
TGACTCTAACATGATCCCAT+CGG | - | chr5_2:50231874-50231893 | None:intergenic | 40.0% | |
CTTTCAATAGGTGATACCGT+AGG | - | chr5_2:50232037-50232056 | None:intergenic | 40.0% | |
CTACGGTATCACCTATTGAA+AGG | + | chr5_2:50232035-50232054 | Msa0774250:CDS | 40.0% | |
GTATCACCTATTGAAAGGGT+TGG | + | chr5_2:50232040-50232059 | Msa0774250:CDS | 40.0% | |
AATATATTGGCGCAAAGGAG+TGG | + | chr5_2:50232065-50232084 | Msa0774250:CDS | 40.0% | |
AAGGCTCTGTTGTTATGTGA+TGG | + | chr5_2:50232161-50232180 | Msa0774250:intron | 40.0% | |
TCATTGTCTACCATTGCTGA+AGG | + | chr5_2:50232283-50232302 | Msa0774250:intron | 40.0% | |
! | TTTTACGTTGCCTTCAGCAA+TGG | - | chr5_2:50232296-50232315 | None:intergenic | 40.0% |
AAATTAGGGAAGGGAAGACA+TGG | + | chr5_2:50232766-50232785 | Msa0774250:intron | 40.0% | |
CGATTGACATCTTCATTTGC+AGG | + | chr5_2:50232829-50232848 | Msa0774250:intron | 40.0% | |
TTGACATCTTCATTTGCAGG+TGG | + | chr5_2:50232832-50232851 | Msa0774250:intron | 40.0% | |
TCACGAAATGATGTCGTACA+AGG | - | chr5_2:50232917-50232936 | None:intergenic | 40.0% | |
CATTTCGTGAATTCCCATCT+TGG | + | chr5_2:50232927-50232946 | Msa0774250:CDS | 40.0% | |
! | TGGATGTTCAGCATCTTTTC+TGG | - | chr5_2:50232975-50232994 | None:intergenic | 40.0% |
TTTCAGCACTTTGGTCTGAA+TGG | - | chr5_2:50233012-50233031 | None:intergenic | 40.0% | |
AACTCTTGTCTTCGGCTATT+GGG | - | chr5_2:50233307-50233326 | None:intergenic | 40.0% | |
AAACTCTTGTCTTCGGCTAT+TGG | - | chr5_2:50233308-50233327 | None:intergenic | 40.0% | |
AATAGCCGAAGACAAGAGTT+TGG | + | chr5_2:50233307-50233326 | Msa0774250:intron | 40.0% | |
TGAGGAAATGGGATCTCTTT+GGG | - | chr5_2:50233435-50233454 | None:intergenic | 40.0% | |
!!! | CTTTTGGCTCGACTTTATCT+TGG | + | chr5_2:50233477-50233496 | Msa0774250:intron | 40.0% |
TGGGATCCTGAAATATCTTG+AGG | + | chr5_2:50233888-50233907 | Msa0774250:CDS | 40.0% | |
GGAAATTTCAAGCTGTGCTA+TGG | + | chr5_2:50233994-50234013 | Msa0774250:CDS | 40.0% | |
AATCGGAAGAAGAAAAGGAG+AGG | + | chr5_2:50234100-50234119 | Msa0774250:CDS | 40.0% | |
ATCGGAAGAAGAAAAGGAGA+GGG | + | chr5_2:50234101-50234120 | Msa0774250:CDS | 40.0% | |
ATCATAGGTGGTCCTGATAA+GGG | + | chr5_2:50234159-50234178 | Msa0774250:CDS | 40.0% | |
ATGGAGGCTGCATTTAGATG+TGG | - | chr5_2:50229510-50229529 | None:intergenic | 45.0% | |
GTAAGAGACAGGAATGGTTG+AGG | - | chr5_2:50229570-50229589 | None:intergenic | 45.0% | |
GCATCCTTGTAGTAAGAGAC+AGG | - | chr5_2:50229581-50229600 | None:intergenic | 45.0% | |
!! | GAGTGTTGGAGAATAGAGAG+AGG | - | chr5_2:50229701-50229720 | None:intergenic | 45.0% |
! | TGCAATACCAGTTTCTGGGT+TGG | + | chr5_2:50229776-50229795 | Msa0774250:CDS | 45.0% |
GATTCAACCAACCCAGAAAC+TGG | - | chr5_2:50229786-50229805 | None:intergenic | 45.0% | |
!! | GTTTCTGGGTTGGTTGAATC+TGG | + | chr5_2:50229786-50229805 | Msa0774250:CDS | 45.0% |
CACGCAAAACAGCATGATCA+GGG | - | chr5_2:50229860-50229879 | None:intergenic | 45.0% | |
ACACGCAAAACAGCATGATC+AGG | - | chr5_2:50229861-50229880 | None:intergenic | 45.0% | |
GTTCCTGCTAGAATTTGCAG+GGG | + | chr5_2:50230266-50230285 | Msa0774250:intron | 45.0% | |
TTCCTGCTAGAATTTGCAGG+GGG | + | chr5_2:50230267-50230286 | Msa0774250:intron | 45.0% | |
CCTAATCCATATGGAAGCTG+AGG | - | chr5_2:50230534-50230553 | None:intergenic | 45.0% | |
CCTCAGCTTCCATATGGATT+AGG | + | chr5_2:50230531-50230550 | Msa0774250:intron | 45.0% | |
CTATCACTCCCTCTCCTATT+TGG | - | chr5_2:50230639-50230658 | None:intergenic | 45.0% | |
CAGACCTCACCTATGACAAA+AGG | - | chr5_2:50231044-50231063 | None:intergenic | 45.0% | |
GCCAATGCAGTAGACAATCA+TGG | + | chr5_2:50231459-50231478 | Msa0774250:intron | 45.0% | |
! | TGGTCTGATTTTGCGACAGT+TGG | + | chr5_2:50231479-50231498 | Msa0774250:intron | 45.0% |
! | GGTCTGATTTTGCGACAGTT+GGG | + | chr5_2:50231480-50231499 | Msa0774250:intron | 45.0% |
GATATTGCTCAGCGTGTTTC+AGG | + | chr5_2:50231635-50231654 | Msa0774250:intron | 45.0% | |
CTTGCGCCTGAAGGAATTAA+TGG | + | chr5_2:50231668-50231687 | Msa0774250:CDS | 45.0% | |
AGGCTGCCATTAATTCCTTC+AGG | - | chr5_2:50231677-50231696 | None:intergenic | 45.0% | |
GGAATTAATGGCAGCCTATG+CGG | + | chr5_2:50231680-50231699 | Msa0774250:CDS | 45.0% | |
TCAGAGTGATGATCGTCTGA+AGG | + | chr5_2:50231739-50231758 | Msa0774250:CDS | 45.0% | |
CAGAGTGATGATCGTCTGAA+GGG | + | chr5_2:50231740-50231759 | Msa0774250:CDS | 45.0% | |
AGAGTGATGATCGTCTGAAG+GGG | + | chr5_2:50231741-50231760 | Msa0774250:CDS | 45.0% | |
! | TCCATGATTACCGTGATGGA+TGG | - | chr5_2:50231807-50231826 | None:intergenic | 45.0% |
TGTGTCCATGATTACCGTGA+TGG | - | chr5_2:50231811-50231830 | None:intergenic | 45.0% | |
CTAACATGATCCCATCGGAA+AGG | - | chr5_2:50231869-50231888 | None:intergenic | 45.0% | |
GCTGAAGGCAACGTAAAATG+TGG | + | chr5_2:50232298-50232317 | Msa0774250:intron | 45.0% | |
TGGAATTTCGACGTCATGTG+AGG | + | chr5_2:50232677-50232696 | Msa0774250:intron | 45.0% | |
TGCAGGTGGTAATTGATGTG+CGG | + | chr5_2:50232846-50232865 | Msa0774250:intron | 45.0% | |
! | TGAATTCCCATCTTGGGTTG+AGG | + | chr5_2:50232934-50232953 | Msa0774250:CDS | 45.0% |
AACGTTCCTCAACCCAAGAT+GGG | - | chr5_2:50232943-50232962 | None:intergenic | 45.0% | |
AAACGTTCCTCAACCCAAGA+TGG | - | chr5_2:50232944-50232963 | None:intergenic | 45.0% | |
GTGCAATACATAGCAACACG+TGG | - | chr5_2:50233064-50233083 | None:intergenic | 45.0% | |
! | CGTGTTGCTATGTATTGCAC+CGG | + | chr5_2:50233064-50233083 | Msa0774250:CDS | 45.0% |
! | GTGTTGCTATGTATTGCACC+GGG | + | chr5_2:50233065-50233084 | Msa0774250:CDS | 45.0% |
TGTTGCTATGTATTGCACCG+GGG | + | chr5_2:50233066-50233085 | Msa0774250:CDS | 45.0% | |
TTTCTCACAACGAATACCCC+CGG | - | chr5_2:50233086-50233105 | None:intergenic | 45.0% | |
ACTCTTGTCTTCGGCTATTG+GGG | - | chr5_2:50233306-50233325 | None:intergenic | 45.0% | |
TTCTGCTTGGGTCTCTTTCT+TGG | + | chr5_2:50233350-50233369 | Msa0774250:intron | 45.0% | |
TCTGCTTGGGTCTCTTTCTT+GGG | + | chr5_2:50233351-50233370 | Msa0774250:intron | 45.0% | |
GTGAGGAAATGGGATCTCTT+TGG | - | chr5_2:50233436-50233455 | None:intergenic | 45.0% | |
TCCTAGGTTTATCACCTGGA+AGG | + | chr5_2:50233865-50233884 | Msa0774250:intron | 45.0% | |
ACCTTCCAGGTGATAAACCT+AGG | - | chr5_2:50233869-50233888 | None:intergenic | 45.0% | |
TAGGTTTATCACCTGGAAGG+TGG | + | chr5_2:50233868-50233887 | Msa0774250:intron | 45.0% | |
AGGTTTATCACCTGGAAGGT+GGG | + | chr5_2:50233869-50233888 | Msa0774250:intron | 45.0% | |
CTGTGCAAAACAGTAAGGAC+AGG | - | chr5_2:50234079-50234098 | None:intergenic | 45.0% | |
TTTGAGAGATGGGGGATCAT+AGG | + | chr5_2:50234144-50234163 | Msa0774250:CDS | 45.0% | |
GATCATAGGTGGTCCTGATA+AGG | + | chr5_2:50234158-50234177 | Msa0774250:CDS | 45.0% | |
!! | TGCCTCCTCTGAAATGTGTT+AGG | + | chr5_2:50234319-50234338 | Msa0774250:three_prime_UTR | 45.0% |
CTCCTAACACATTTCAGAGG+AGG | - | chr5_2:50234324-50234343 | None:intergenic | 45.0% | |
GCACTCCTAACACATTTCAG+AGG | - | chr5_2:50234327-50234346 | None:intergenic | 45.0% | |
!! | GTTCCTGCTGGTTCTGAGAA+TGG | - | chr5_2:50229529-50229548 | None:intergenic | 50.0% |
CATTATGGGCCCTGTTGGAT+TGG | - | chr5_2:50230247-50230266 | None:intergenic | 50.0% | |
AGGAACATTATGGGCCCTGT+TGG | - | chr5_2:50230252-50230271 | None:intergenic | 50.0% | |
! | CTAGAATTTGCAGGGGGTGT+AGG | + | chr5_2:50230273-50230292 | Msa0774250:intron | 50.0% |
TTGAGAGGCGGATGGGAATT+AGG | + | chr5_2:50230318-50230337 | Msa0774250:intron | 50.0% | |
TGAGAGGCGGATGGGAATTA+GGG | + | chr5_2:50230319-50230338 | Msa0774250:intron | 50.0% | |
! | TACCGTGCCTTGATTTTCCC+AGG | + | chr5_2:50230413-50230432 | Msa0774250:intron | 50.0% |
GCTCATCCCAAAGTCTGCAA+AGG | - | chr5_2:50230471-50230490 | None:intergenic | 50.0% | |
!! | TTCCATATGGATTAGGGGCC+AGG | + | chr5_2:50230538-50230557 | Msa0774250:intron | 50.0% |
! | ATGGATTTTGGGCCATGACC+TGG | - | chr5_2:50230559-50230578 | None:intergenic | 50.0% |
TCTACACAACTGGGCCAGAT+GGG | - | chr5_2:50231122-50231141 | None:intergenic | 50.0% | |
! | TACTGCATTGGCAGCATTGG+AGG | - | chr5_2:50231451-50231470 | None:intergenic | 50.0% |
! | GTCTACTGCATTGGCAGCAT+TGG | - | chr5_2:50231454-50231473 | None:intergenic | 50.0% |
ATTGCTCAGCGTGTTTCAGG+CGG | + | chr5_2:50231638-50231657 | Msa0774250:intron | 50.0% | |
GGTATCATTCTTGCGCCTGA+AGG | + | chr5_2:50231659-50231678 | Msa0774250:CDS | 50.0% | |
GCCATCCATCACGGTAATCA+TGG | + | chr5_2:50231803-50231822 | Msa0774250:CDS | 50.0% | |
TGTCACTCTTGGGATGCCTA+CGG | + | chr5_2:50232018-50232037 | Msa0774250:CDS | 50.0% | |
GCTGTAGCACTGTAACGTAG+CGG | + | chr5_2:50232573-50232592 | Msa0774250:intron | 50.0% | |
GGGAAGGGAAGACATGGTAT+TGG | + | chr5_2:50232772-50232791 | Msa0774250:intron | 50.0% | |
GTTGCTATGTATTGCACCGG+GGG | + | chr5_2:50233067-50233086 | Msa0774250:CDS | 50.0% | |
ATTTCAGGATCCCACCTTCC+AGG | - | chr5_2:50233882-50233901 | None:intergenic | 50.0% | |
TTCCGGAGAGACAAAGCCTT+TGG | + | chr5_2:50233914-50233933 | Msa0774250:CDS | 50.0% | |
TCCGGAGAGACAAAGCCTTT+GGG | + | chr5_2:50233915-50233934 | Msa0774250:CDS | 50.0% | |
! | TCCCAAAGGCTTTGTCTCTC+CGG | - | chr5_2:50233919-50233938 | None:intergenic | 50.0% |
! | GAGAGACAAAGCCTTTGGGA+GGG | + | chr5_2:50233919-50233938 | Msa0774250:CDS | 50.0% |
AAGAGAGTCTCTGTCGAGCA+TGG | + | chr5_2:50233961-50233980 | Msa0774250:CDS | 50.0% | |
AGTCTCTGTCGAGCATGGTT+TGG | + | chr5_2:50233966-50233985 | Msa0774250:CDS | 50.0% | |
TCCATGTCAGCATCACTCAC+AGG | - | chr5_2:50234030-50234049 | None:intergenic | 50.0% | |
!! | CCTGCTGGTTCTGAGAATGG+AGG | - | chr5_2:50229526-50229545 | None:intergenic | 55.0% |
CCTCCATTCTCAGAACCAGC+AGG | + | chr5_2:50229523-50229542 | Msa0774250:CDS | 55.0% | |
CACCCCCTGCAAATTCTAGC+AGG | - | chr5_2:50230272-50230291 | None:intergenic | 55.0% | |
AGGTAAGTTTAGCCGCTGCC+AGG | + | chr5_2:50230293-50230312 | Msa0774250:intron | 55.0% | |
CACGGTAGCTGCGAGATTAG+CGG | - | chr5_2:50230400-50230419 | None:intergenic | 55.0% | |
GGCCTGGGAAAATCAAGGCA+CGG | - | chr5_2:50230418-50230437 | None:intergenic | 55.0% | |
TGGGATGAGCGCGTAATGCT+CGG | + | chr5_2:50230481-50230500 | Msa0774250:intron | 55.0% | |
TGTCCAGGTAACCTGGACCA+TGG | - | chr5_2:50230507-50230526 | None:intergenic | 55.0% | |
TGGTCCAGGTTACCTGGACA+TGG | + | chr5_2:50230507-50230526 | Msa0774250:intron | 55.0% | |
GGTCCAGGTTACCTGGACAT+GGG | + | chr5_2:50230508-50230527 | Msa0774250:intron | 55.0% | |
CATGGGCCTCAGCTTCCATA+TGG | + | chr5_2:50230525-50230544 | Msa0774250:intron | 55.0% | |
GACCTGGCCCCTAATCCATA+TGG | - | chr5_2:50230543-50230562 | None:intergenic | 55.0% | |
!! | ATGGATTAGGGGCCAGGTCA+TGG | + | chr5_2:50230544-50230563 | Msa0774250:intron | 55.0% |
CTACACAACTGGGCCAGATG+GGG | - | chr5_2:50231121-50231140 | None:intergenic | 55.0% | |
GTCTACACAACTGGGCCAGA+TGG | - | chr5_2:50231123-50231142 | None:intergenic | 55.0% | |
TGAATCGCCTGTCAGTCCTG+AGG | + | chr5_2:50231775-50231794 | Msa0774250:CDS | 55.0% | |
CGAAGACGCACCTTTCCGAT+GGG | + | chr5_2:50231856-50231875 | Msa0774250:CDS | 55.0% | |
GCTTGGGTCTCTTTCTTGGG+CGG | + | chr5_2:50233354-50233373 | Msa0774250:intron | 55.0% | |
CTTGGGTCTCTTTCTTGGGC+GGG | + | chr5_2:50233355-50233374 | Msa0774250:intron | 55.0% | |
GGAGAGACAAAGCCTTTGGG+AGG | + | chr5_2:50233918-50233937 | Msa0774250:CDS | 55.0% | |
! | CAAAGCACTCTCCCTCCCAA+AGG | - | chr5_2:50233933-50233952 | None:intergenic | 55.0% |
! | GTCGAGCATGGTTTGGCACA+AGG | + | chr5_2:50233973-50233992 | Msa0774250:CDS | 55.0% |
GCCTGTGAGTGATGCTGACA+TGG | + | chr5_2:50234026-50234045 | Msa0774250:CDS | 55.0% | |
GAGAGATGGGGGATCATAGG+TGG | + | chr5_2:50234147-50234166 | Msa0774250:CDS | 55.0% | |
CGAACAGGACAGTGCTAGCA+GGG | + | chr5_2:50234197-50234216 | Msa0774250:CDS | 55.0% | |
!! | CCAGGTGTTGAGAGGCGGAT+GGG | + | chr5_2:50230311-50230330 | Msa0774250:intron | 60.0% |
AGCTGCGAGATTAGCGGCGT+GGG | - | chr5_2:50230394-50230413 | None:intergenic | 60.0% | |
TAGCTGCGAGATTAGCGGCG+TGG | - | chr5_2:50230395-50230414 | None:intergenic | 60.0% | |
GTAATGCTCGGCCATGGTCC+AGG | + | chr5_2:50230493-50230512 | Msa0774250:intron | 60.0% | |
AGGCCCATGTCCAGGTAACC+TGG | - | chr5_2:50230514-50230533 | None:intergenic | 60.0% | |
GTGGTTATGGTGGCCCCATC+TGG | + | chr5_2:50231105-50231124 | Msa0774250:intron | 60.0% | |
ATGGCAGCCTATGCGGTACG+CGG | + | chr5_2:50231687-50231706 | Msa0774250:CDS | 60.0% | |
ATCGCCTGTCAGTCCTGAGG+AGG | + | chr5_2:50231778-50231797 | Msa0774250:CDS | 60.0% | |
! | TGATGGATGGCCTCCTCCTC+AGG | - | chr5_2:50231794-50231813 | None:intergenic | 60.0% |
GAGGAGGAGGCCATCCATCA+CGG | + | chr5_2:50231794-50231813 | Msa0774250:CDS | 60.0% | |
GCCAGTTCTCCTCTTGCTGC+TGG | + | chr5_2:50231833-50231852 | Msa0774250:CDS | 60.0% | |
GCCAGCAGCAAGAGGAGAAC+TGG | - | chr5_2:50231837-50231856 | None:intergenic | 60.0% | |
GCGAAGACGCACCTTTCCGA+TGG | + | chr5_2:50231855-50231874 | Msa0774250:CDS | 60.0% | |
GCACTGTCCTGTTCGCGTGT+CGG | - | chr5_2:50234192-50234211 | None:intergenic | 60.0% | |
GCGAACAGGACAGTGCTAGC+AGG | + | chr5_2:50234196-50234215 | Msa0774250:CDS | 60.0% | |
!! | AGCCGCTGCCAGGTGTTGAG+AGG | + | chr5_2:50230303-50230322 | Msa0774250:intron | 65.0% |
CGCCTCTCAACACCTGGCAG+CGG | - | chr5_2:50230308-50230327 | None:intergenic | 65.0% | |
!! | CGCTGCCAGGTGTTGAGAGG+CGG | + | chr5_2:50230306-50230325 | Msa0774250:intron | 65.0% |
!! | GCCAGGTGTTGAGAGGCGGA+TGG | + | chr5_2:50230310-50230329 | Msa0774250:intron | 65.0% |
CCCATCCGCCTCTCAACACC+TGG | - | chr5_2:50230314-50230333 | None:intergenic | 65.0% | |
GAGCGCGTAATGCTCGGCCA+TGG | + | chr5_2:50230487-50230506 | Msa0774250:intron | 65.0% | |
CGGCCATGGTCCAGGTTACC+TGG | + | chr5_2:50230501-50230520 | Msa0774250:intron | 65.0% | |
GGAAGCTGAGGCCCATGTCC+AGG | - | chr5_2:50230522-50230541 | None:intergenic | 65.0% | |
TGGCAGCCTATGCGGTACGC+GGG | + | chr5_2:50231688-50231707 | Msa0774250:CDS | 65.0% | |
CCTATGCGGTACGCGGGAGT+CGG | + | chr5_2:50231694-50231713 | Msa0774250:CDS | 65.0% | |
GCCTGTCAGTCCTGAGGAGG+AGG | + | chr5_2:50231781-50231800 | Msa0774250:CDS | 65.0% | |
GCCTCCTCCTCAGGACTGAC+AGG | - | chr5_2:50231785-50231804 | None:intergenic | 65.0% | |
GCGTCTTCGCCAGCAGCAAG+AGG | - | chr5_2:50231845-50231864 | None:intergenic | 65.0% | |
GTGGTCCTGATAAGGGCCGC+CGG | + | chr5_2:50234166-50234185 | Msa0774250:CDS | 65.0% | |
! | TGTCCTGTTCGCGTGTCGGC+CGG | - | chr5_2:50234188-50234207 | None:intergenic | 65.0% |
CCGACTCCCGCGTACCGCAT+AGG | - | chr5_2:50231697-50231716 | None:intergenic | 70.0% | |
ATGCGGTACGCGGGAGTCGG+TGG | + | chr5_2:50231697-50231716 | Msa0774250:CDS | 70.0% | |
GTCGGCCGGCGGCCCTTATC+AGG | - | chr5_2:50234174-50234193 | None:intergenic | 75.0% | |
! | CCTGTTCGCGTGTCGGCCGG+CGG | - | chr5_2:50234185-50234204 | None:intergenic | 75.0% |
! | CCGCCGGCCGACACGCGAAC+AGG | + | chr5_2:50234182-50234201 | Msa0774250:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 50229493 | 50234442 | 50229493 | ID=Msa0774250;Name=Msa0774250 |
chr5_2 | mRNA | 50229493 | 50234442 | 50229493 | ID=Msa0774250-mRNA-1;Parent=Msa0774250;Name=Msa0774250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=8|1|1|1|0.8|0.66|6|173|478 |
chr5_2 | exon | 50229493 | 50229908 | 50229493 | ID=Msa0774250-mRNA-1:exon:14961;Parent=Msa0774250-mRNA-1 |
chr5_2 | exon | 50231647 | 50231907 | 50231647 | ID=Msa0774250-mRNA-1:exon:14962;Parent=Msa0774250-mRNA-1 |
chr5_2 | exon | 50232016 | 50232114 | 50232016 | ID=Msa0774250-mRNA-1:exon:14963;Parent=Msa0774250-mRNA-1 |
chr5_2 | exon | 50232851 | 50233141 | 50232851 | ID=Msa0774250-mRNA-1:exon:14964;Parent=Msa0774250-mRNA-1 |
chr5_2 | exon | 50233871 | 50234264 | 50233871 | ID=Msa0774250-mRNA-1:exon:14965;Parent=Msa0774250-mRNA-1 |
chr5_2 | exon | 50234286 | 50234442 | 50234286 | ID=Msa0774250-mRNA-1:exon:14966;Parent=Msa0774250-mRNA-1 |
chr5_2 | five_prime_UTR | 50229493 | 50229500 | 50229493 | ID=Msa0774250-mRNA-1:five_prime_utr;Parent=Msa0774250-mRNA-1 |
chr5_2 | CDS | 50229501 | 50229908 | 50229501 | ID=Msa0774250-mRNA-1:cds;Parent=Msa0774250-mRNA-1 |
chr5_2 | CDS | 50231647 | 50231907 | 50231647 | ID=Msa0774250-mRNA-1:cds;Parent=Msa0774250-mRNA-1 |
chr5_2 | CDS | 50232016 | 50232114 | 50232016 | ID=Msa0774250-mRNA-1:cds;Parent=Msa0774250-mRNA-1 |
chr5_2 | CDS | 50232851 | 50233141 | 50232851 | ID=Msa0774250-mRNA-1:cds;Parent=Msa0774250-mRNA-1 |
chr5_2 | CDS | 50233871 | 50234248 | 50233871 | ID=Msa0774250-mRNA-1:cds;Parent=Msa0774250-mRNA-1 |
chr5_2 | three_prime_UTR | 50234249 | 50234264 | 50234249 | ID=Msa0774250-mRNA-1:three_prime_utr;Parent=Msa0774250-mRNA-1 |
chr5_2 | three_prime_UTR | 50234286 | 50234442 | 50234286 | ID=Msa0774250-mRNA-1:three_prime_utr;Parent=Msa0774250-mRNA-1 |
Gene Sequence |
Protein sequence |