AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0774250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0774250 MtrunA17_Chr5g0428361 95.198 479 21 2 1 478 1 478 0.0 914
Msa0774250 MtrunA17_Chr1g0192901 27.928 333 173 11 110 426 61 342 6.68e-27 114
Msa0774250 MtrunA17_Chr3g0077981 27.697 343 169 16 101 409 92 389 8.78e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0774250 AT2G40760.1 74.734 376 80 4 104 472 100 467 0.0 586
Msa0774250 AT1G09280.1 30.000 300 148 11 106 388 18 272 4.03e-27 115
Msa0774250 AT1G17850.1 25.862 348 204 9 104 439 79 384 1.52e-21 97.4
Msa0774250 AT1G17850.2 25.788 349 205 9 104 439 79 386 2.45e-21 96.7

Find 136 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAACTGGTATTGCATTAT+TGG 0.180712 5_2:-50229769 None:intergenic
GATATTGCTCAGCGTGTTTC+AGG 0.198058 5_2:+50231635 Msa0774250:intron
GAGACTCCATATTCATATTC+TGG 0.238512 5_2:-50234054 None:intergenic
GAATGGTTTACATCATCTTT+TGG 0.253898 5_2:-50232992 None:intergenic
TTTCATATATAAGAGTAATT+TGG 0.256124 5_2:+50234423 Msa0774250:three_prime_UTR
GAACTTCCTCAAGATATTTC+AGG 0.259128 5_2:-50233894 None:intergenic
TTATATATGAAATGTCAAAA+AGG 0.264365 5_2:-50234412 None:intergenic
AATAATGCAATACCAGTTTC+TGG 0.270448 5_2:+50229771 Msa0774250:CDS
TGAAGAAGAGTGACTTGTTC+TGG 0.293157 5_2:-50229652 None:intergenic
GTCGGCCGGCGGCCCTTATC+AGG 0.294504 5_2:-50234171 None:intergenic
GAAAGGGTTGGAAAATATAT+TGG 0.295361 5_2:+50232052 Msa0774250:CDS
CTTGCGCCTGAAGGAATTAA+TGG 0.297291 5_2:+50231668 Msa0774250:CDS
GAAACTGGTATTGCATTATT+GGG 0.311107 5_2:-50229768 None:intergenic
ATATAGCAACTCACAGTATC+AGG 0.337635 5_2:-50232106 None:intergenic
TTTCAGCACTTTGGTCTGAA+TGG 0.344568 5_2:-50233009 None:intergenic
GTTTCTGGGTTGGTTGAATC+TGG 0.353146 5_2:+50229786 Msa0774250:CDS
TGCCTCCTCTGAAATGTGTT+AGG 0.366567 5_2:+50234319 Msa0774250:three_prime_UTR
CTTGTTCTGGTTTCAGATGA+AGG 0.370667 5_2:-50229639 None:intergenic
GATCATAGGTGGTCCTGATA+AGG 0.376228 5_2:+50234158 Msa0774250:CDS
TTCCGGAGAGACAAAGCCTT+TGG 0.383264 5_2:+50233914 Msa0774250:CDS
GAATCCCCAGAATATGAATA+TGG 0.387181 5_2:+50234048 Msa0774250:CDS
TTTCACAGATTGTCACTCTT+GGG 0.396238 5_2:+50232008 Msa0774250:intron
CATTTCGTGAATTCCCATCT+TGG 0.398350 5_2:+50232927 Msa0774250:CDS
AGGCTGCCATTAATTCCTTC+AGG 0.403942 5_2:-50231674 None:intergenic
TGATGGATGGCCTCCTCCTC+AGG 0.405580 5_2:-50231791 None:intergenic
CCGCCGGCCGACACGCGAAC+AGG 0.405736 5_2:+50234182 Msa0774250:CDS
GCCAGTTCTCCTCTTGCTGC+TGG 0.408623 5_2:+50231833 Msa0774250:CDS
ATTTCGTGAATTCCCATCTT+GGG 0.408789 5_2:+50232928 Msa0774250:CDS
ACAAGAATAGGAAAGTTTAA+AGG 0.412243 5_2:+50232881 Msa0774250:CDS
GGTTGAGGAAGACAAGAATA+TGG 0.413938 5_2:-50229552 None:intergenic
TCCCAAAGGCTTTGTCTCTC+CGG 0.419057 5_2:-50233916 None:intergenic
GAAATATCTTGAGGAAGTTC+CGG 0.421592 5_2:+50233897 Msa0774250:CDS
GCCTCCTCCTCAGGACTGAC+AGG 0.428234 5_2:-50231782 None:intergenic
GATTCAACCAACCCAGAAAC+TGG 0.429345 5_2:-50229783 None:intergenic
ATTTCAGGATCCCACCTTCC+AGG 0.429687 5_2:-50233879 None:intergenic
TCCGGAGAGACAAAGCCTTT+GGG 0.429789 5_2:+50233915 Msa0774250:CDS
AGACTCCATATTCATATTCT+GGG 0.438623 5_2:-50234053 None:intergenic
GTTCCTGCTGGTTCTGAGAA+TGG 0.444562 5_2:-50229526 None:intergenic
ACACGCAAAACAGCATGATC+AGG 0.448747 5_2:-50229858 None:intergenic
TTGTTCTGGTTTCAGATGAA+GGG 0.451842 5_2:-50229638 None:intergenic
GAAGCAATTATGTCAACAAC+TGG 0.456268 5_2:+50229887 Msa0774250:CDS
TCTAAGTGTTTCTCTCACTC+TGG 0.458193 5_2:+50229744 Msa0774250:CDS
GCCATCCATCACGGTAATCA+TGG 0.460795 5_2:+50231803 Msa0774250:CDS
GCCAGCAGCAAGAGGAGAAC+TGG 0.462709 5_2:-50231834 None:intergenic
ATCATAGGTGGTCCTGATAA+GGG 0.462911 5_2:+50234159 Msa0774250:CDS
TGTCCTGTTCGCGTGTCGGC+CGG 0.470775 5_2:-50234185 None:intergenic
GTAAGAGACAGGAATGGTTG+AGG 0.481351 5_2:-50229567 None:intergenic
AGTCTCTGTCGAGCATGGTT+TGG 0.481467 5_2:+50233966 Msa0774250:CDS
GGAAATTTCAAGCTGTGCTA+TGG 0.482226 5_2:+50233994 Msa0774250:CDS
ATAATGCAATACCAGTTTCT+GGG 0.482427 5_2:+50229772 Msa0774250:CDS
AATAACTACGAAACAAGAAT+AGG 0.483787 5_2:+50232869 Msa0774250:CDS
CGTGTTGCTATGTATTGCAC+CGG 0.487043 5_2:+50233064 Msa0774250:CDS
TTGTTGACATAATTGCTTCA+AGG 0.488970 5_2:-50229883 None:intergenic
GATTTCTGTGCAAAACAGTA+AGG 0.489983 5_2:-50234081 None:intergenic
GTTGGTTGAATCTGGTGAAA+TGG 0.493893 5_2:+50229794 Msa0774250:CDS
AAACGTTCCTCAACCCAAGA+TGG 0.494304 5_2:-50232941 None:intergenic
TAGAGTCAAGTTGAAGAAAG+AGG 0.495217 5_2:+50231886 Msa0774250:CDS
ACAGAAATCGGAAGAAGAAA+AGG 0.498292 5_2:+50234095 Msa0774250:CDS
GCCTGTCAGTCCTGAGGAGG+AGG 0.498406 5_2:+50231781 Msa0774250:CDS
TGAATTCCCATCTTGGGTTG+AGG 0.500420 5_2:+50232934 Msa0774250:CDS
TGTTGACATAATTGCTTCAA+GGG 0.509904 5_2:-50229882 None:intergenic
TGCAATACCAGTTTCTGGGT+TGG 0.517873 5_2:+50229776 Msa0774250:CDS
GAGTGTTGGAGAATAGAGAG+AGG 0.522244 5_2:-50229698 None:intergenic
GCGAAGACGCACCTTTCCGA+TGG 0.523018 5_2:+50231855 Msa0774250:CDS
TACGGTATCACCTATTGAAA+GGG 0.523518 5_2:+50232036 Msa0774250:CDS
CATTCCTGTCTCTTACTACA+AGG 0.527397 5_2:+50229574 Msa0774250:CDS
ATGCGGTACGCGGGAGTCGG+TGG 0.527902 5_2:+50231697 Msa0774250:CDS
CAGAGTGATGATCGTCTGAA+GGG 0.529530 5_2:+50231740 Msa0774250:CDS
GCATCCTTGTAGTAAGAGAC+AGG 0.534767 5_2:-50229578 None:intergenic
CTACGGTATCACCTATTGAA+AGG 0.535558 5_2:+50232035 Msa0774250:CDS
GCGAACAGGACAGTGCTAGC+AGG 0.538298 5_2:+50234196 Msa0774250:CDS
GTCGAGCATGGTTTGGCACA+AGG 0.543196 5_2:+50233973 Msa0774250:CDS
AGAATATGGTATGTTCCTGC+TGG 0.544026 5_2:-50229538 None:intergenic
AACGTTCCTCAACCCAAGAT+GGG 0.545143 5_2:-50232940 None:intergenic
TCACGAAATGATGTCGTACA+AGG 0.547018 5_2:-50232914 None:intergenic
GTATCACCTATTGAAAGGGT+TGG 0.547522 5_2:+50232040 Msa0774250:CDS
AATATATTGGCGCAAAGGAG+TGG 0.547772 5_2:+50232065 Msa0774250:CDS
TCCTAGGTTTATCACCTGGA+AGG 0.548476 5_2:+50233865 Msa0774250:intron
CCTATGCGGTACGCGGGAGT+CGG 0.548913 5_2:+50231694 Msa0774250:CDS
TGTTCTGGTTTCAGATGAAG+GGG 0.549136 5_2:-50229637 None:intergenic
TAGGTTTATCACCTGGAAGG+TGG 0.549898 5_2:+50233868 Msa0774250:intron
TGAAATGGAATCTCTTGTTG+TGG 0.554918 5_2:+50229809 Msa0774250:CDS
TCCATGATTACCGTGATGGA+TGG 0.555016 5_2:-50231804 None:intergenic
CTGTGCAAAACAGTAAGGAC+AGG 0.555519 5_2:-50234076 None:intergenic
GTGTTGCTATGTATTGCACC+GGG 0.561647 5_2:+50233065 Msa0774250:CDS
GCGTCTTCGCCAGCAGCAAG+AGG 0.564376 5_2:-50231842 None:intergenic
GGTATCATTCTTGCGCCTGA+AGG 0.564695 5_2:+50231659 Msa0774250:CDS
GCCTGTGAGTGATGCTGACA+TGG 0.565387 5_2:+50234026 Msa0774250:CDS
TCAAGTCTACTTCTTAGCAA+AGG 0.568146 5_2:+50233109 Msa0774250:CDS
AGGTTTATCACCTGGAAGGT+GGG 0.568395 5_2:+50233869 Msa0774250:intron
GTTGAAGAAGATGAAGATGA+TGG 0.571193 5_2:-50229612 None:intergenic
TCCATGTCAGCATCACTCAC+AGG 0.575383 5_2:-50234027 None:intergenic
CCTGTTCGCGTGTCGGCCGG+CGG 0.578594 5_2:-50234182 None:intergenic
CGAACAGGACAGTGCTAGCA+GGG 0.586047 5_2:+50234197 Msa0774250:CDS
TCAGAGTGATGATCGTCTGA+AGG 0.589849 5_2:+50231739 Msa0774250:CDS
CCGACTCCCGCGTACCGCAT+AGG 0.593832 5_2:-50231694 None:intergenic
GCTTTGAAGAGAATGAGTGT+TGG 0.594168 5_2:-50229712 None:intergenic
GCACTGTCCTGTTCGCGTGT+CGG 0.595459 5_2:-50234189 None:intergenic
CACGCAAAACAGCATGATCA+GGG 0.597142 5_2:-50229857 None:intergenic
CCTCCATTCTCAGAACCAGC+AGG 0.599405 5_2:+50229523 Msa0774250:CDS
AATTTCCTAGGTTTATCACC+TGG 0.599744 5_2:+50233861 Msa0774250:intron
GTGGTCCTGATAAGGGCCGC+CGG 0.600523 5_2:+50234166 Msa0774250:CDS
AAGAGAGTCTCTGTCGAGCA+TGG 0.601409 5_2:+50233961 Msa0774250:CDS
ATCGGAAGAAGAAAAGGAGA+GGG 0.608676 5_2:+50234101 Msa0774250:CDS
TGTCACTCTTGGGATGCCTA+CGG 0.608920 5_2:+50232018 Msa0774250:CDS
TGGGATCCTGAAATATCTTG+AGG 0.610854 5_2:+50233888 Msa0774250:CDS
TGACTCTAACATGATCCCAT+CGG 0.612610 5_2:-50231871 None:intergenic
CGAAGACGCACCTTTCCGAT+GGG 0.613239 5_2:+50231856 Msa0774250:CDS
TCTTAGCAAAGGTTTCAAAG+AGG 0.616788 5_2:+50233120 Msa0774250:CDS
GGAGAGACAAAGCCTTTGGG+AGG 0.617199 5_2:+50233918 Msa0774250:CDS
GACTCCATATTCATATTCTG+GGG 0.618092 5_2:-50234052 None:intergenic
ATGGAGGCTGCATTTAGATG+TGG 0.618896 5_2:-50229507 None:intergenic
GAGAGACAAAGCCTTTGGGA+GGG 0.620781 5_2:+50233919 Msa0774250:CDS
CAAAGCACTCTCCCTCCCAA+AGG 0.622495 5_2:-50233930 None:intergenic
TGGCAGCCTATGCGGTACGC+GGG 0.626777 5_2:+50231688 Msa0774250:CDS
GGAATTAATGGCAGCCTATG+CGG 0.628077 5_2:+50231680 Msa0774250:CDS
ATTGCTCAGCGTGTTTCAGG+CGG 0.630807 5_2:+50231638 Msa0774250:intron
TTTCTCACAACGAATACCCC+CGG 0.636565 5_2:-50233083 None:intergenic
TGGAAAATATATTGGCGCAA+AGG 0.638349 5_2:+50232060 Msa0774250:CDS
CTCCTAACACATTTCAGAGG+AGG 0.640055 5_2:-50234321 None:intergenic
CCTGCTGGTTCTGAGAATGG+AGG 0.640153 5_2:-50229523 None:intergenic
GAGGAGGAGGCCATCCATCA+CGG 0.641644 5_2:+50231794 Msa0774250:CDS
CTAACATGATCCCATCGGAA+AGG 0.650816 5_2:-50231866 None:intergenic
ATCGCCTGTCAGTCCTGAGG+AGG 0.650831 5_2:+50231778 Msa0774250:CDS
ATGGCAGCCTATGCGGTACG+CGG 0.651154 5_2:+50231687 Msa0774250:CDS
TGTGTCCATGATTACCGTGA+TGG 0.656638 5_2:-50231808 None:intergenic
AGAGTGATGATCGTCTGAAG+GGG 0.657846 5_2:+50231741 Msa0774250:CDS
AATCGGAAGAAGAAAAGGAG+AGG 0.663172 5_2:+50234100 Msa0774250:CDS
GCACTCCTAACACATTTCAG+AGG 0.667563 5_2:-50234324 None:intergenic
GTTGCTATGTATTGCACCGG+GGG 0.674693 5_2:+50233067 Msa0774250:CDS
CTTGTAGTAAGAGACAGGAA+TGG 0.678677 5_2:-50229573 None:intergenic
TGAATCGCCTGTCAGTCCTG+AGG 0.683044 5_2:+50231775 Msa0774250:CDS
TGCAGGTGGTAATTGATGTG+CGG 0.683900 5_2:+50232846 Msa0774250:intron
CTTTCAATAGGTGATACCGT+AGG 0.713249 5_2:-50232034 None:intergenic
GTGCAATACATAGCAACACG+TGG 0.725901 5_2:-50233061 None:intergenic
TGTTGCTATGTATTGCACCG+GGG 0.728200 5_2:+50233066 Msa0774250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCATGTATATATTTTT+TGG + chr5_2:50230787-50230806 Msa0774250:intron 10.0%
!! CAAAACAAAATAAAATTTAA+AGG - chr5_2:50233154-50233173 None:intergenic 10.0%
!!! TTATTACATTTTTGTAATTC+AGG + chr5_2:50230611-50230630 Msa0774250:intron 15.0%
!!! GTTTTTTAATCTTCATTATA+AGG + chr5_2:50232142-50232161 Msa0774250:intron 15.0%
!!! AATTTTAAAACTTTTTGATC+TGG + chr5_2:50232402-50232421 Msa0774250:intron 15.0%
!!! TAAACATATTTTAACTGATA+TGG + chr5_2:50233271-50233290 Msa0774250:intron 15.0%
!! TATATATGAAATGTCAAAAA+GGG - chr5_2:50234414-50234433 None:intergenic 15.0%
!! TTATATATGAAATGTCAAAA+AGG - chr5_2:50234415-50234434 None:intergenic 15.0%
!! ACTTTCAAAATATCAAACAT+AGG + chr5_2:50230016-50230035 Msa0774250:intron 20.0%
!! CTTTCAAAATATCAAACATA+GGG + chr5_2:50230017-50230036 Msa0774250:intron 20.0%
!! ATACACATAGTGATAATTTA+GGG + chr5_2:50230583-50230602 Msa0774250:intron 20.0%
!!! TATAGTTAGGTTTTAAGTTA+TGG + chr5_2:50231066-50231085 Msa0774250:intron 20.0%
!! TAAAATGTGGATTTATATCA+TGG + chr5_2:50232311-50232330 Msa0774250:intron 20.0%
!! AAAATGTGGATTTATATCAT+GGG + chr5_2:50232312-50232331 Msa0774250:intron 20.0%
!! TGAATAGAACTTAATTTACA+TGG + chr5_2:50232701-50232720 Msa0774250:intron 20.0%
!! GAATAGAACTTAATTTACAT+GGG + chr5_2:50232702-50232721 Msa0774250:intron 20.0%
!! ACTTTGACATATAGAAAATT+AGG + chr5_2:50232751-50232770 Msa0774250:intron 20.0%
!! CTTTGACATATAGAAAATTA+GGG + chr5_2:50232752-50232771 Msa0774250:intron 20.0%
!!! TATTTTAACTGATATGGAAA+TGG + chr5_2:50233277-50233296 Msa0774250:intron 20.0%
!!! ATTTTAACTGATATGGAAAT+GGG + chr5_2:50233278-50233297 Msa0774250:intron 20.0%
!! TAAATAGCACATTAAAAACA+AGG - chr5_2:50233692-50233711 None:intergenic 20.0%
!!! TTTTTGGTTACAATTTTTAC+TGG + chr5_2:50233806-50233825 Msa0774250:intron 20.0%
!!! TTTTGGTTACAATTTTTACT+GGG + chr5_2:50233807-50233826 Msa0774250:intron 20.0%
!!! GTACGTTAAACTTTTAAAAA+TGG + chr5_2:50234357-50234376 Msa0774250:three_prime_UTR 20.0%
! AAAAATAAGTCAATCCAAAC+AGG - chr5_2:50230043-50230062 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG + chr5_2:50230108-50230127 Msa0774250:intron 25.0%
!! TAGGGTTATATTTAGAGTTA+AGG + chr5_2:50230337-50230356 Msa0774250:intron 25.0%
! GATACACATAGTGATAATTT+AGG + chr5_2:50230582-50230601 Msa0774250:intron 25.0%
! TTTAGTATTAGTGAAGGTTA+TGG + chr5_2:50230958-50230977 Msa0774250:intron 25.0%
! TACCATTTACATATATGAAC+TGG + chr5_2:50230990-50231009 Msa0774250:intron 25.0%
! TATTGCAAGAACATAAATTG+CGG + chr5_2:50231157-50231176 Msa0774250:intron 25.0%
! TACGTACAAATAACTTAACT+TGG + chr5_2:50231972-50231991 Msa0774250:intron 25.0%
! AGTTGCTATATTCCTATTAT+CGG + chr5_2:50232118-50232137 Msa0774250:intron 25.0%
! GATTAAAAAACACCGATAAT+AGG - chr5_2:50232133-50232152 None:intergenic 25.0%
!!! CTTGAGAGTGTTAAATATTT+AGG + chr5_2:50232234-50232253 Msa0774250:intron 25.0%
!! TTTCTAGTGTTGTTAAATAG+AGG + chr5_2:50232464-50232483 Msa0774250:intron 25.0%
! ACATATAGAAAATTAGGGAA+GGG + chr5_2:50232757-50232776 Msa0774250:intron 25.0%
! AATAACTACGAAACAAGAAT+AGG + chr5_2:50232869-50232888 Msa0774250:CDS 25.0%
! ACAAGAATAGGAAAGTTTAA+AGG + chr5_2:50232881-50232900 Msa0774250:CDS 25.0%
! CATTTGATGCAAAAATCATT+TGG + chr5_2:50233187-50233206 Msa0774250:intron 25.0%
! GCATTTAGAAATTGGTTAAT+TGG - chr5_2:50233402-50233421 None:intergenic 25.0%
! ATTAACCAATTTCTAAATGC+TGG + chr5_2:50233402-50233421 Msa0774250:intron 25.0%
!! TGATTTAAGATAAATCTGTG+AGG - chr5_2:50233453-50233472 None:intergenic 25.0%
! TCACAGATTTATCTTAAATC+AGG + chr5_2:50233452-50233471 Msa0774250:intron 25.0%
!! TATCTTAAATCAGGATCTTT+TGG + chr5_2:50233461-50233480 Msa0774250:intron 25.0%
! TAAACTTATGAGTGTTTGAT+AGG - chr5_2:50233525-50233544 None:intergenic 25.0%
! TCAAACACTCATAAGTTTAT+AGG + chr5_2:50233526-50233545 Msa0774250:intron 25.0%
!!! GAACAAGATTTGTTAGTTTT+TGG + chr5_2:50233790-50233809 Msa0774250:intron 25.0%
! ATTCTGTTTGAAAATTTCCT+AGG + chr5_2:50233849-50233868 Msa0774250:intron 25.0%
! ACAAAAACAATTTGAGAGAT+GGG + chr5_2:50234134-50234153 Msa0774250:CDS 25.0%
GAAACTGGTATTGCATTATT+GGG - chr5_2:50229771-50229790 None:intergenic 30.0%
AGAAACTGGTATTGCATTAT+TGG - chr5_2:50229772-50229791 None:intergenic 30.0%
AATAATGCAATACCAGTTTC+TGG + chr5_2:50229771-50229790 Msa0774250:CDS 30.0%
ATAATGCAATACCAGTTTCT+GGG + chr5_2:50229772-50229791 Msa0774250:CDS 30.0%
! GGTTTCGTTTTATAAGTTTG+CGG + chr5_2:50229830-50229849 Msa0774250:CDS 30.0%
TGTTGACATAATTGCTTCAA+GGG - chr5_2:50229885-50229904 None:intergenic 30.0%
TTGTTGACATAATTGCTTCA+AGG - chr5_2:50229886-50229905 None:intergenic 30.0%
AATTCTAGCAGGAACATTAT+GGG - chr5_2:50230261-50230280 None:intergenic 30.0%
AAATTCTAGCAGGAACATTA+TGG - chr5_2:50230262-50230281 None:intergenic 30.0%
! GGTTATATTTAGAGTTAAGG+AGG + chr5_2:50230340-50230359 Msa0774250:intron 30.0%
! TATATTTAGAGTTAAGGAGG+TGG + chr5_2:50230343-50230362 Msa0774250:intron 30.0%
GATCCAAGTCATTGTTAATT+AGG - chr5_2:50230439-50230458 None:intergenic 30.0%
! TGTGTATCTGTATGGATTTT+GGG - chr5_2:50230570-50230589 None:intergenic 30.0%
! ATGTGTATCTGTATGGATTT+TGG - chr5_2:50230571-50230590 None:intergenic 30.0%
TATCACTATGTGTATCTGTA+TGG - chr5_2:50230578-50230597 None:intergenic 30.0%
TTGTAATTCAGGTACCAAAT+AGG + chr5_2:50230622-50230641 Msa0774250:intron 30.0%
ATAAGACTAAATCTTCAAGC+TGG - chr5_2:50230751-50230770 None:intergenic 30.0%
CTAAAATGAACAAAACACTG+TGG - chr5_2:50230922-50230941 None:intergenic 30.0%
!! CAGTGTTTTGTTCATTTTAG+AGG + chr5_2:50230922-50230941 Msa0774250:intron 30.0%
TCCATCTTTAGTATTAGTGA+AGG + chr5_2:50230952-50230971 Msa0774250:intron 30.0%
ACCTTCACTAATACTAAAGA+TGG - chr5_2:50230956-50230975 None:intergenic 30.0%
TGCCAGTTCATATATGTAAA+TGG - chr5_2:50230995-50231014 None:intergenic 30.0%
ATAAATTGCGGTTGAAATTG+TGG + chr5_2:50231169-50231188 Msa0774250:intron 30.0%
GTTGAAATTGTGGTTATTGT+GGG + chr5_2:50231179-50231198 Msa0774250:intron 30.0%
!! TGGTCTCTTAATTGATTTGA+CGG - chr5_2:50231263-50231282 None:intergenic 30.0%
! GTATATTTTCGAATCTGTTG+TGG + chr5_2:50231321-50231340 Msa0774250:intron 30.0%
! AACAAAGTAGTTCAGTCTTT+TGG - chr5_2:50231928-50231947 None:intergenic 30.0%
! TATTTTCCAACCCTTTCAAT+AGG - chr5_2:50232049-50232068 None:intergenic 30.0%
GAAAGGGTTGGAAAATATAT+TGG + chr5_2:50232052-50232071 Msa0774250:CDS 30.0%
ATTCACGTTTAAATTCTGCA+GGG - chr5_2:50232195-50232214 None:intergenic 30.0%
!!! ATGGGTTTTCTAGCTAAAAA+TGG + chr5_2:50232330-50232349 Msa0774250:intron 30.0%
!!! TGGGTTTTCTAGCTAAAAAT+GGG + chr5_2:50232331-50232350 Msa0774250:intron 30.0%
! TTTGCAAGCTCTAATATTGA+AGG + chr5_2:50232364-50232383 Msa0774250:intron 30.0%
TTGTTAAATAGAGGCTATGT+AGG + chr5_2:50232473-50232492 Msa0774250:intron 30.0%
GATTATTACTCCACTTTGTA+AGG + chr5_2:50232652-50232671 Msa0774250:intron 30.0%
AAATTCCAATCCTTACAAAG+TGG - chr5_2:50232665-50232684 None:intergenic 30.0%
GACATATAGAAAATTAGGGA+AGG + chr5_2:50232756-50232775 Msa0774250:intron 30.0%
! CAATGAAAATTTTGCACTTC+TGG - chr5_2:50232809-50232828 None:intergenic 30.0%
! GAATGGTTTACATCATCTTT+TGG - chr5_2:50232995-50233014 None:intergenic 30.0%
TGAATTTGCGTATTAACAAG+TGG - chr5_2:50233249-50233268 None:intergenic 30.0%
AAATATAAGTAGCTTCTGCT+TGG + chr5_2:50233337-50233356 Msa0774250:intron 30.0%
AATATAAGTAGCTTCTGCTT+GGG + chr5_2:50233338-50233357 Msa0774250:intron 30.0%
AGATAAATCTGTGAGGAAAT+GGG - chr5_2:50233446-50233465 None:intergenic 30.0%
AAGATAAATCTGTGAGGAAA+TGG - chr5_2:50233447-50233466 None:intergenic 30.0%
! ATGAGTGTTTGATAGGTTTT+TGG - chr5_2:50233518-50233537 None:intergenic 30.0%
AGACTCCATATTCATATTCT+GGG - chr5_2:50234056-50234075 None:intergenic 30.0%
! TTACTGTTTTGCACAGAAAT+CGG + chr5_2:50234083-50234102 Msa0774250:CDS 30.0%
GACAAAAACAATTTGAGAGA+TGG + chr5_2:50234133-50234152 Msa0774250:CDS 30.0%
CAAAAACAATTTGAGAGATG+GGG + chr5_2:50234135-50234154 Msa0774250:CDS 30.0%
AAAAACAATTTGAGAGATGG+GGG + chr5_2:50234136-50234155 Msa0774250:CDS 30.0%
GTTGAAGAAGATGAAGATGA+TGG - chr5_2:50229615-50229634 None:intergenic 35.0%
!! TTGTTCTGGTTTCAGATGAA+GGG - chr5_2:50229641-50229660 None:intergenic 35.0%
! GGTTTTTGAATGAAGGGTTA+GGG - chr5_2:50229680-50229699 None:intergenic 35.0%
! AGGTTTTTGAATGAAGGGTT+AGG - chr5_2:50229681-50229700 None:intergenic 35.0%
! GAGAGAGGTTTTTGAATGAA+GGG - chr5_2:50229686-50229705 None:intergenic 35.0%
! AGAGAGAGGTTTTTGAATGA+AGG - chr5_2:50229687-50229706 None:intergenic 35.0%
TGAAATGGAATCTCTTGTTG+TGG + chr5_2:50229809-50229828 Msa0774250:CDS 35.0%
GAAGCAATTATGTCAACAAC+TGG + chr5_2:50229887-50229906 Msa0774250:CDS 35.0%
AAAAACTAAGCCAATCCAAC+AGG + chr5_2:50230234-50230253 Msa0774250:intron 35.0%
AAAACTAAGCCAATCCAACA+GGG + chr5_2:50230235-50230254 Msa0774250:intron 35.0%
AGTCATTGTTAATTAGGCCT+GGG - chr5_2:50230433-50230452 None:intergenic 35.0%
AAGTCATTGTTAATTAGGCC+TGG - chr5_2:50230434-50230453 None:intergenic 35.0%
AGGCCTAATTAACAATGACT+TGG + chr5_2:50230433-50230452 Msa0774250:intron 35.0%
GAGACTAACTTGACAGATTA+CGG + chr5_2:50230663-50230682 Msa0774250:intron 35.0%
AATGAACAAAACACTGTGGT+GGG - chr5_2:50230918-50230937 None:intergenic 35.0%
AAATGAACAAAACACTGTGG+TGG - chr5_2:50230919-50230938 None:intergenic 35.0%
! GGCATATTTCCTTTTGTCAT+AGG + chr5_2:50231011-50231030 Msa0774250:intron 35.0%
TGGTTATGTTGTGAATCTTG+TGG + chr5_2:50231086-50231105 Msa0774250:intron 35.0%
TGTTGTGAATCTTGTGGTTA+TGG + chr5_2:50231092-50231111 Msa0774250:intron 35.0%
GGTTGAAATTGTGGTTATTG+TGG + chr5_2:50231178-50231197 Msa0774250:intron 35.0%
ATTCTTGCATTGAGCTACAT+GGG - chr5_2:50231212-50231231 None:intergenic 35.0%
AATTCTTGCATTGAGCTACA+TGG - chr5_2:50231213-50231232 None:intergenic 35.0%
ATGTAGCTCAATGCAAGAAT+TGG + chr5_2:50231212-50231231 Msa0774250:intron 35.0%
TGTAGCTCAATGCAAGAATT+GGG + chr5_2:50231213-50231232 Msa0774250:intron 35.0%
AGATATAAGATCGAGACTGT+AGG - chr5_2:50231382-50231401 None:intergenic 35.0%
!!! ACAGTACACACTTTTTCAGT+TGG + chr5_2:50231413-50231432 Msa0774250:intron 35.0%
!!! TACACACTTTTTCAGTTGGA+GGG + chr5_2:50231417-50231436 Msa0774250:intron 35.0%
!! TAGAGTCAAGTTGAAGAAAG+AGG + chr5_2:50231886-50231905 Msa0774250:CDS 35.0%
! TTTTCACAGATTGTCACTCT+TGG + chr5_2:50232007-50232026 Msa0774250:intron 35.0%
TTTCACAGATTGTCACTCTT+GGG + chr5_2:50232008-50232027 Msa0774250:intron 35.0%
TACGGTATCACCTATTGAAA+GGG + chr5_2:50232036-50232055 Msa0774250:CDS 35.0%
TGGAAAATATATTGGCGCAA+AGG + chr5_2:50232060-50232079 Msa0774250:CDS 35.0%
ATATAGCAACTCACAGTATC+AGG - chr5_2:50232109-50232128 None:intergenic 35.0%
CATTCACGTTTAAATTCTGC+AGG - chr5_2:50232196-50232215 None:intergenic 35.0%
CTGCAGAATTTAAACGTGAA+TGG + chr5_2:50232194-50232213 Msa0774250:intron 35.0%
!! CGTGAATGGCTTAATTTGTT+TGG + chr5_2:50232208-50232227 Msa0774250:intron 35.0%
! TGTTTTGCGATGCACTATAT+TGG + chr5_2:50232539-50232558 Msa0774250:intron 35.0%
!! TGCACTATATTGGTTCTAAC+AGG + chr5_2:50232549-50232568 Msa0774250:intron 35.0%
TTACTCCACTTTGTAAGGAT+TGG + chr5_2:50232657-50232676 Msa0774250:intron 35.0%
ATTTCGTGAATTCCCATCTT+GGG + chr5_2:50232928-50232947 Msa0774250:CDS 35.0%
!!! TCGTTTCTTTTTCAGCACTT+TGG - chr5_2:50233021-50233040 None:intergenic 35.0%
TCAAGTCTACTTCTTAGCAA+AGG + chr5_2:50233109-50233128 Msa0774250:CDS 35.0%
TCTTAGCAAAGGTTTCAAAG+AGG + chr5_2:50233120-50233139 Msa0774250:CDS 35.0%
TGCGTATTAACAAGTGGAAA+CGG - chr5_2:50233243-50233262 None:intergenic 35.0%
TCATACCAAACTCTTGTCTT+CGG - chr5_2:50233315-50233334 None:intergenic 35.0%
CTACTCCAGCATTTAGAAAT+TGG - chr5_2:50233410-50233429 None:intergenic 35.0%
!!! GTTTGATAGGTTTTTGGCAT+CGG - chr5_2:50233512-50233531 None:intergenic 35.0%
TGTCTTCGCATATCTACTTT+CGG + chr5_2:50233592-50233611 Msa0774250:intron 35.0%
AATTTCCTAGGTTTATCACC+TGG + chr5_2:50233861-50233880 Msa0774250:intron 35.0%
GAACTTCCTCAAGATATTTC+AGG - chr5_2:50233897-50233916 None:intergenic 35.0%
GAAATATCTTGAGGAAGTTC+CGG + chr5_2:50233897-50233916 Msa0774250:CDS 35.0%
GAATCCCCAGAATATGAATA+TGG + chr5_2:50234048-50234067 Msa0774250:CDS 35.0%
GACTCCATATTCATATTCTG+GGG - chr5_2:50234055-50234074 None:intergenic 35.0%
GAGACTCCATATTCATATTC+TGG - chr5_2:50234057-50234076 None:intergenic 35.0%
GATTTCTGTGCAAAACAGTA+AGG - chr5_2:50234084-50234103 None:intergenic 35.0%
ACAGAAATCGGAAGAAGAAA+AGG + chr5_2:50234095-50234114 Msa0774250:CDS 35.0%
AGAATATGGTATGTTCCTGC+TGG - chr5_2:50229541-50229560 None:intergenic 40.0%
GGTTGAGGAAGACAAGAATA+TGG - chr5_2:50229555-50229574 None:intergenic 40.0%
CTTGTAGTAAGAGACAGGAA+TGG - chr5_2:50229576-50229595 None:intergenic 40.0%
CATTCCTGTCTCTTACTACA+AGG + chr5_2:50229574-50229593 Msa0774250:CDS 40.0%
!! TGTTCTGGTTTCAGATGAAG+GGG - chr5_2:50229640-50229659 None:intergenic 40.0%
!! CTTGTTCTGGTTTCAGATGA+AGG - chr5_2:50229642-50229661 None:intergenic 40.0%
!! TGAAGAAGAGTGACTTGTTC+TGG - chr5_2:50229655-50229674 None:intergenic 40.0%
!! GCTTTGAAGAGAATGAGTGT+TGG - chr5_2:50229715-50229734 None:intergenic 40.0%
TCTAAGTGTTTCTCTCACTC+TGG + chr5_2:50229744-50229763 Msa0774250:CDS 40.0%
GTTGGTTGAATCTGGTGAAA+TGG + chr5_2:50229794-50229813 Msa0774250:CDS 40.0%
TATCAAACATAGGGCCTGTT+TGG + chr5_2:50230026-50230045 Msa0774250:intron 40.0%
ATGTTCCTGCTAGAATTTGC+AGG + chr5_2:50230264-50230283 Msa0774250:intron 40.0%
TGTTCCTGCTAGAATTTGCA+GGG + chr5_2:50230265-50230284 Msa0774250:intron 40.0%
TTAGAGTTAAGGAGGTGGAT+CGG + chr5_2:50230348-50230367 Msa0774250:intron 40.0%
AATTAGGCCTGGGAAAATCA+AGG - chr5_2:50230423-50230442 None:intergenic 40.0%
AGTTGTTCCTTTGCAGACTT+TGG + chr5_2:50230461-50230480 Msa0774250:intron 40.0%
GTTGTTCCTTTGCAGACTTT+GGG + chr5_2:50230462-50230481 Msa0774250:intron 40.0%
! CTCAGCTTCCATATGGATTA+GGG + chr5_2:50230532-50230551 Msa0774250:intron 40.0%
!! TCAGCTTCCATATGGATTAG+GGG + chr5_2:50230533-50230552 Msa0774250:intron 40.0%
ATTCAGGTACCAAATAGGAG+AGG + chr5_2:50230627-50230646 Msa0774250:intron 40.0%
TTCAGGTACCAAATAGGAGA+GGG + chr5_2:50230628-50230647 Msa0774250:intron 40.0%
GGAACATCACCTATGACAAA+AGG - chr5_2:50231023-50231042 None:intergenic 40.0%
! GGTGATGTTCCTTTTGTCAT+AGG + chr5_2:50231032-50231051 Msa0774250:intron 40.0%
! TGTTCCTTTTGTCATAGGTG+AGG + chr5_2:50231037-50231056 Msa0774250:intron 40.0%
GGTGAGGTCTGTATATAGTT+AGG + chr5_2:50231053-50231072 Msa0774250:intron 40.0%
TGTGAATCTTGTGGTTATGG+TGG + chr5_2:50231095-50231114 Msa0774250:intron 40.0%
AGTCTACAGTCTACACAACT+GGG - chr5_2:50231131-50231150 None:intergenic 40.0%
TAGTCTACAGTCTACACAAC+TGG - chr5_2:50231132-50231151 None:intergenic 40.0%
ATTGTGGTTATTGTGGGCTT+TGG + chr5_2:50231185-50231204 Msa0774250:intron 40.0%
TTCTTGCATTGAGCTACATG+GGG - chr5_2:50231211-50231230 None:intergenic 40.0%
GATCTTCGTCAAACGGTTTA+TGG - chr5_2:50231283-50231302 None:intergenic 40.0%
ACCGTTTGACGAAGATCAAA+TGG + chr5_2:50231286-50231305 Msa0774250:intron 40.0%
GCCATTTGATCTTCGTCAAA+CGG - chr5_2:50231290-50231309 None:intergenic 40.0%
ATAAGATCGAGACTGTAGGT+AGG - chr5_2:50231378-50231397 None:intergenic 40.0%
!!! GTACACACTTTTTCAGTTGG+AGG + chr5_2:50231416-50231435 Msa0774250:intron 40.0%
ACCATGATTGTCTACTGCAT+TGG - chr5_2:50231463-50231482 None:intergenic 40.0%
CAAGGACTCAAATTGCAAAC+TGG - chr5_2:50231541-50231560 None:intergenic 40.0%
CAGTTTGCAATTTGAGTCCT+TGG + chr5_2:50231539-50231558 Msa0774250:intron 40.0%
TTAATGCACTATGTCGACCA+AGG - chr5_2:50231559-50231578 None:intergenic 40.0%
TGACTCTAACATGATCCCAT+CGG - chr5_2:50231874-50231893 None:intergenic 40.0%
CTTTCAATAGGTGATACCGT+AGG - chr5_2:50232037-50232056 None:intergenic 40.0%
CTACGGTATCACCTATTGAA+AGG + chr5_2:50232035-50232054 Msa0774250:CDS 40.0%
GTATCACCTATTGAAAGGGT+TGG + chr5_2:50232040-50232059 Msa0774250:CDS 40.0%
AATATATTGGCGCAAAGGAG+TGG + chr5_2:50232065-50232084 Msa0774250:CDS 40.0%
AAGGCTCTGTTGTTATGTGA+TGG + chr5_2:50232161-50232180 Msa0774250:intron 40.0%
TCATTGTCTACCATTGCTGA+AGG + chr5_2:50232283-50232302 Msa0774250:intron 40.0%
! TTTTACGTTGCCTTCAGCAA+TGG - chr5_2:50232296-50232315 None:intergenic 40.0%
AAATTAGGGAAGGGAAGACA+TGG + chr5_2:50232766-50232785 Msa0774250:intron 40.0%
CGATTGACATCTTCATTTGC+AGG + chr5_2:50232829-50232848 Msa0774250:intron 40.0%
TTGACATCTTCATTTGCAGG+TGG + chr5_2:50232832-50232851 Msa0774250:intron 40.0%
TCACGAAATGATGTCGTACA+AGG - chr5_2:50232917-50232936 None:intergenic 40.0%
CATTTCGTGAATTCCCATCT+TGG + chr5_2:50232927-50232946 Msa0774250:CDS 40.0%
! TGGATGTTCAGCATCTTTTC+TGG - chr5_2:50232975-50232994 None:intergenic 40.0%
TTTCAGCACTTTGGTCTGAA+TGG - chr5_2:50233012-50233031 None:intergenic 40.0%
AACTCTTGTCTTCGGCTATT+GGG - chr5_2:50233307-50233326 None:intergenic 40.0%
AAACTCTTGTCTTCGGCTAT+TGG - chr5_2:50233308-50233327 None:intergenic 40.0%
AATAGCCGAAGACAAGAGTT+TGG + chr5_2:50233307-50233326 Msa0774250:intron 40.0%
TGAGGAAATGGGATCTCTTT+GGG - chr5_2:50233435-50233454 None:intergenic 40.0%
!!! CTTTTGGCTCGACTTTATCT+TGG + chr5_2:50233477-50233496 Msa0774250:intron 40.0%
TGGGATCCTGAAATATCTTG+AGG + chr5_2:50233888-50233907 Msa0774250:CDS 40.0%
GGAAATTTCAAGCTGTGCTA+TGG + chr5_2:50233994-50234013 Msa0774250:CDS 40.0%
AATCGGAAGAAGAAAAGGAG+AGG + chr5_2:50234100-50234119 Msa0774250:CDS 40.0%
ATCGGAAGAAGAAAAGGAGA+GGG + chr5_2:50234101-50234120 Msa0774250:CDS 40.0%
ATCATAGGTGGTCCTGATAA+GGG + chr5_2:50234159-50234178 Msa0774250:CDS 40.0%
ATGGAGGCTGCATTTAGATG+TGG - chr5_2:50229510-50229529 None:intergenic 45.0%
GTAAGAGACAGGAATGGTTG+AGG - chr5_2:50229570-50229589 None:intergenic 45.0%
GCATCCTTGTAGTAAGAGAC+AGG - chr5_2:50229581-50229600 None:intergenic 45.0%
!! GAGTGTTGGAGAATAGAGAG+AGG - chr5_2:50229701-50229720 None:intergenic 45.0%
! TGCAATACCAGTTTCTGGGT+TGG + chr5_2:50229776-50229795 Msa0774250:CDS 45.0%
GATTCAACCAACCCAGAAAC+TGG - chr5_2:50229786-50229805 None:intergenic 45.0%
!! GTTTCTGGGTTGGTTGAATC+TGG + chr5_2:50229786-50229805 Msa0774250:CDS 45.0%
CACGCAAAACAGCATGATCA+GGG - chr5_2:50229860-50229879 None:intergenic 45.0%
ACACGCAAAACAGCATGATC+AGG - chr5_2:50229861-50229880 None:intergenic 45.0%
GTTCCTGCTAGAATTTGCAG+GGG + chr5_2:50230266-50230285 Msa0774250:intron 45.0%
TTCCTGCTAGAATTTGCAGG+GGG + chr5_2:50230267-50230286 Msa0774250:intron 45.0%
CCTAATCCATATGGAAGCTG+AGG - chr5_2:50230534-50230553 None:intergenic 45.0%
CCTCAGCTTCCATATGGATT+AGG + chr5_2:50230531-50230550 Msa0774250:intron 45.0%
CTATCACTCCCTCTCCTATT+TGG - chr5_2:50230639-50230658 None:intergenic 45.0%
CAGACCTCACCTATGACAAA+AGG - chr5_2:50231044-50231063 None:intergenic 45.0%
GCCAATGCAGTAGACAATCA+TGG + chr5_2:50231459-50231478 Msa0774250:intron 45.0%
! TGGTCTGATTTTGCGACAGT+TGG + chr5_2:50231479-50231498 Msa0774250:intron 45.0%
! GGTCTGATTTTGCGACAGTT+GGG + chr5_2:50231480-50231499 Msa0774250:intron 45.0%
GATATTGCTCAGCGTGTTTC+AGG + chr5_2:50231635-50231654 Msa0774250:intron 45.0%
CTTGCGCCTGAAGGAATTAA+TGG + chr5_2:50231668-50231687 Msa0774250:CDS 45.0%
AGGCTGCCATTAATTCCTTC+AGG - chr5_2:50231677-50231696 None:intergenic 45.0%
GGAATTAATGGCAGCCTATG+CGG + chr5_2:50231680-50231699 Msa0774250:CDS 45.0%
TCAGAGTGATGATCGTCTGA+AGG + chr5_2:50231739-50231758 Msa0774250:CDS 45.0%
CAGAGTGATGATCGTCTGAA+GGG + chr5_2:50231740-50231759 Msa0774250:CDS 45.0%
AGAGTGATGATCGTCTGAAG+GGG + chr5_2:50231741-50231760 Msa0774250:CDS 45.0%
! TCCATGATTACCGTGATGGA+TGG - chr5_2:50231807-50231826 None:intergenic 45.0%
TGTGTCCATGATTACCGTGA+TGG - chr5_2:50231811-50231830 None:intergenic 45.0%
CTAACATGATCCCATCGGAA+AGG - chr5_2:50231869-50231888 None:intergenic 45.0%
GCTGAAGGCAACGTAAAATG+TGG + chr5_2:50232298-50232317 Msa0774250:intron 45.0%
TGGAATTTCGACGTCATGTG+AGG + chr5_2:50232677-50232696 Msa0774250:intron 45.0%
TGCAGGTGGTAATTGATGTG+CGG + chr5_2:50232846-50232865 Msa0774250:intron 45.0%
! TGAATTCCCATCTTGGGTTG+AGG + chr5_2:50232934-50232953 Msa0774250:CDS 45.0%
AACGTTCCTCAACCCAAGAT+GGG - chr5_2:50232943-50232962 None:intergenic 45.0%
AAACGTTCCTCAACCCAAGA+TGG - chr5_2:50232944-50232963 None:intergenic 45.0%
GTGCAATACATAGCAACACG+TGG - chr5_2:50233064-50233083 None:intergenic 45.0%
! CGTGTTGCTATGTATTGCAC+CGG + chr5_2:50233064-50233083 Msa0774250:CDS 45.0%
! GTGTTGCTATGTATTGCACC+GGG + chr5_2:50233065-50233084 Msa0774250:CDS 45.0%
TGTTGCTATGTATTGCACCG+GGG + chr5_2:50233066-50233085 Msa0774250:CDS 45.0%
TTTCTCACAACGAATACCCC+CGG - chr5_2:50233086-50233105 None:intergenic 45.0%
ACTCTTGTCTTCGGCTATTG+GGG - chr5_2:50233306-50233325 None:intergenic 45.0%
TTCTGCTTGGGTCTCTTTCT+TGG + chr5_2:50233350-50233369 Msa0774250:intron 45.0%
TCTGCTTGGGTCTCTTTCTT+GGG + chr5_2:50233351-50233370 Msa0774250:intron 45.0%
GTGAGGAAATGGGATCTCTT+TGG - chr5_2:50233436-50233455 None:intergenic 45.0%
TCCTAGGTTTATCACCTGGA+AGG + chr5_2:50233865-50233884 Msa0774250:intron 45.0%
ACCTTCCAGGTGATAAACCT+AGG - chr5_2:50233869-50233888 None:intergenic 45.0%
TAGGTTTATCACCTGGAAGG+TGG + chr5_2:50233868-50233887 Msa0774250:intron 45.0%
AGGTTTATCACCTGGAAGGT+GGG + chr5_2:50233869-50233888 Msa0774250:intron 45.0%
CTGTGCAAAACAGTAAGGAC+AGG - chr5_2:50234079-50234098 None:intergenic 45.0%
TTTGAGAGATGGGGGATCAT+AGG + chr5_2:50234144-50234163 Msa0774250:CDS 45.0%
GATCATAGGTGGTCCTGATA+AGG + chr5_2:50234158-50234177 Msa0774250:CDS 45.0%
!! TGCCTCCTCTGAAATGTGTT+AGG + chr5_2:50234319-50234338 Msa0774250:three_prime_UTR 45.0%
CTCCTAACACATTTCAGAGG+AGG - chr5_2:50234324-50234343 None:intergenic 45.0%
GCACTCCTAACACATTTCAG+AGG - chr5_2:50234327-50234346 None:intergenic 45.0%
!! GTTCCTGCTGGTTCTGAGAA+TGG - chr5_2:50229529-50229548 None:intergenic 50.0%
CATTATGGGCCCTGTTGGAT+TGG - chr5_2:50230247-50230266 None:intergenic 50.0%
AGGAACATTATGGGCCCTGT+TGG - chr5_2:50230252-50230271 None:intergenic 50.0%
! CTAGAATTTGCAGGGGGTGT+AGG + chr5_2:50230273-50230292 Msa0774250:intron 50.0%
TTGAGAGGCGGATGGGAATT+AGG + chr5_2:50230318-50230337 Msa0774250:intron 50.0%
TGAGAGGCGGATGGGAATTA+GGG + chr5_2:50230319-50230338 Msa0774250:intron 50.0%
! TACCGTGCCTTGATTTTCCC+AGG + chr5_2:50230413-50230432 Msa0774250:intron 50.0%
GCTCATCCCAAAGTCTGCAA+AGG - chr5_2:50230471-50230490 None:intergenic 50.0%
!! TTCCATATGGATTAGGGGCC+AGG + chr5_2:50230538-50230557 Msa0774250:intron 50.0%
! ATGGATTTTGGGCCATGACC+TGG - chr5_2:50230559-50230578 None:intergenic 50.0%
TCTACACAACTGGGCCAGAT+GGG - chr5_2:50231122-50231141 None:intergenic 50.0%
! TACTGCATTGGCAGCATTGG+AGG - chr5_2:50231451-50231470 None:intergenic 50.0%
! GTCTACTGCATTGGCAGCAT+TGG - chr5_2:50231454-50231473 None:intergenic 50.0%
ATTGCTCAGCGTGTTTCAGG+CGG + chr5_2:50231638-50231657 Msa0774250:intron 50.0%
GGTATCATTCTTGCGCCTGA+AGG + chr5_2:50231659-50231678 Msa0774250:CDS 50.0%
GCCATCCATCACGGTAATCA+TGG + chr5_2:50231803-50231822 Msa0774250:CDS 50.0%
TGTCACTCTTGGGATGCCTA+CGG + chr5_2:50232018-50232037 Msa0774250:CDS 50.0%
GCTGTAGCACTGTAACGTAG+CGG + chr5_2:50232573-50232592 Msa0774250:intron 50.0%
GGGAAGGGAAGACATGGTAT+TGG + chr5_2:50232772-50232791 Msa0774250:intron 50.0%
GTTGCTATGTATTGCACCGG+GGG + chr5_2:50233067-50233086 Msa0774250:CDS 50.0%
ATTTCAGGATCCCACCTTCC+AGG - chr5_2:50233882-50233901 None:intergenic 50.0%
TTCCGGAGAGACAAAGCCTT+TGG + chr5_2:50233914-50233933 Msa0774250:CDS 50.0%
TCCGGAGAGACAAAGCCTTT+GGG + chr5_2:50233915-50233934 Msa0774250:CDS 50.0%
! TCCCAAAGGCTTTGTCTCTC+CGG - chr5_2:50233919-50233938 None:intergenic 50.0%
! GAGAGACAAAGCCTTTGGGA+GGG + chr5_2:50233919-50233938 Msa0774250:CDS 50.0%
AAGAGAGTCTCTGTCGAGCA+TGG + chr5_2:50233961-50233980 Msa0774250:CDS 50.0%
AGTCTCTGTCGAGCATGGTT+TGG + chr5_2:50233966-50233985 Msa0774250:CDS 50.0%
TCCATGTCAGCATCACTCAC+AGG - chr5_2:50234030-50234049 None:intergenic 50.0%
!! CCTGCTGGTTCTGAGAATGG+AGG - chr5_2:50229526-50229545 None:intergenic 55.0%
CCTCCATTCTCAGAACCAGC+AGG + chr5_2:50229523-50229542 Msa0774250:CDS 55.0%
CACCCCCTGCAAATTCTAGC+AGG - chr5_2:50230272-50230291 None:intergenic 55.0%
AGGTAAGTTTAGCCGCTGCC+AGG + chr5_2:50230293-50230312 Msa0774250:intron 55.0%
CACGGTAGCTGCGAGATTAG+CGG - chr5_2:50230400-50230419 None:intergenic 55.0%
GGCCTGGGAAAATCAAGGCA+CGG - chr5_2:50230418-50230437 None:intergenic 55.0%
TGGGATGAGCGCGTAATGCT+CGG + chr5_2:50230481-50230500 Msa0774250:intron 55.0%
TGTCCAGGTAACCTGGACCA+TGG - chr5_2:50230507-50230526 None:intergenic 55.0%
TGGTCCAGGTTACCTGGACA+TGG + chr5_2:50230507-50230526 Msa0774250:intron 55.0%
GGTCCAGGTTACCTGGACAT+GGG + chr5_2:50230508-50230527 Msa0774250:intron 55.0%
CATGGGCCTCAGCTTCCATA+TGG + chr5_2:50230525-50230544 Msa0774250:intron 55.0%
GACCTGGCCCCTAATCCATA+TGG - chr5_2:50230543-50230562 None:intergenic 55.0%
!! ATGGATTAGGGGCCAGGTCA+TGG + chr5_2:50230544-50230563 Msa0774250:intron 55.0%
CTACACAACTGGGCCAGATG+GGG - chr5_2:50231121-50231140 None:intergenic 55.0%
GTCTACACAACTGGGCCAGA+TGG - chr5_2:50231123-50231142 None:intergenic 55.0%
TGAATCGCCTGTCAGTCCTG+AGG + chr5_2:50231775-50231794 Msa0774250:CDS 55.0%
CGAAGACGCACCTTTCCGAT+GGG + chr5_2:50231856-50231875 Msa0774250:CDS 55.0%
GCTTGGGTCTCTTTCTTGGG+CGG + chr5_2:50233354-50233373 Msa0774250:intron 55.0%
CTTGGGTCTCTTTCTTGGGC+GGG + chr5_2:50233355-50233374 Msa0774250:intron 55.0%
GGAGAGACAAAGCCTTTGGG+AGG + chr5_2:50233918-50233937 Msa0774250:CDS 55.0%
! CAAAGCACTCTCCCTCCCAA+AGG - chr5_2:50233933-50233952 None:intergenic 55.0%
! GTCGAGCATGGTTTGGCACA+AGG + chr5_2:50233973-50233992 Msa0774250:CDS 55.0%
GCCTGTGAGTGATGCTGACA+TGG + chr5_2:50234026-50234045 Msa0774250:CDS 55.0%
GAGAGATGGGGGATCATAGG+TGG + chr5_2:50234147-50234166 Msa0774250:CDS 55.0%
CGAACAGGACAGTGCTAGCA+GGG + chr5_2:50234197-50234216 Msa0774250:CDS 55.0%
!! CCAGGTGTTGAGAGGCGGAT+GGG + chr5_2:50230311-50230330 Msa0774250:intron 60.0%
AGCTGCGAGATTAGCGGCGT+GGG - chr5_2:50230394-50230413 None:intergenic 60.0%
TAGCTGCGAGATTAGCGGCG+TGG - chr5_2:50230395-50230414 None:intergenic 60.0%
GTAATGCTCGGCCATGGTCC+AGG + chr5_2:50230493-50230512 Msa0774250:intron 60.0%
AGGCCCATGTCCAGGTAACC+TGG - chr5_2:50230514-50230533 None:intergenic 60.0%
GTGGTTATGGTGGCCCCATC+TGG + chr5_2:50231105-50231124 Msa0774250:intron 60.0%
ATGGCAGCCTATGCGGTACG+CGG + chr5_2:50231687-50231706 Msa0774250:CDS 60.0%
ATCGCCTGTCAGTCCTGAGG+AGG + chr5_2:50231778-50231797 Msa0774250:CDS 60.0%
! TGATGGATGGCCTCCTCCTC+AGG - chr5_2:50231794-50231813 None:intergenic 60.0%
GAGGAGGAGGCCATCCATCA+CGG + chr5_2:50231794-50231813 Msa0774250:CDS 60.0%
GCCAGTTCTCCTCTTGCTGC+TGG + chr5_2:50231833-50231852 Msa0774250:CDS 60.0%
GCCAGCAGCAAGAGGAGAAC+TGG - chr5_2:50231837-50231856 None:intergenic 60.0%
GCGAAGACGCACCTTTCCGA+TGG + chr5_2:50231855-50231874 Msa0774250:CDS 60.0%
GCACTGTCCTGTTCGCGTGT+CGG - chr5_2:50234192-50234211 None:intergenic 60.0%
GCGAACAGGACAGTGCTAGC+AGG + chr5_2:50234196-50234215 Msa0774250:CDS 60.0%
!! AGCCGCTGCCAGGTGTTGAG+AGG + chr5_2:50230303-50230322 Msa0774250:intron 65.0%
CGCCTCTCAACACCTGGCAG+CGG - chr5_2:50230308-50230327 None:intergenic 65.0%
!! CGCTGCCAGGTGTTGAGAGG+CGG + chr5_2:50230306-50230325 Msa0774250:intron 65.0%
!! GCCAGGTGTTGAGAGGCGGA+TGG + chr5_2:50230310-50230329 Msa0774250:intron 65.0%
CCCATCCGCCTCTCAACACC+TGG - chr5_2:50230314-50230333 None:intergenic 65.0%
GAGCGCGTAATGCTCGGCCA+TGG + chr5_2:50230487-50230506 Msa0774250:intron 65.0%
CGGCCATGGTCCAGGTTACC+TGG + chr5_2:50230501-50230520 Msa0774250:intron 65.0%
GGAAGCTGAGGCCCATGTCC+AGG - chr5_2:50230522-50230541 None:intergenic 65.0%
TGGCAGCCTATGCGGTACGC+GGG + chr5_2:50231688-50231707 Msa0774250:CDS 65.0%
CCTATGCGGTACGCGGGAGT+CGG + chr5_2:50231694-50231713 Msa0774250:CDS 65.0%
GCCTGTCAGTCCTGAGGAGG+AGG + chr5_2:50231781-50231800 Msa0774250:CDS 65.0%
GCCTCCTCCTCAGGACTGAC+AGG - chr5_2:50231785-50231804 None:intergenic 65.0%
GCGTCTTCGCCAGCAGCAAG+AGG - chr5_2:50231845-50231864 None:intergenic 65.0%
GTGGTCCTGATAAGGGCCGC+CGG + chr5_2:50234166-50234185 Msa0774250:CDS 65.0%
! TGTCCTGTTCGCGTGTCGGC+CGG - chr5_2:50234188-50234207 None:intergenic 65.0%
CCGACTCCCGCGTACCGCAT+AGG - chr5_2:50231697-50231716 None:intergenic 70.0%
ATGCGGTACGCGGGAGTCGG+TGG + chr5_2:50231697-50231716 Msa0774250:CDS 70.0%
GTCGGCCGGCGGCCCTTATC+AGG - chr5_2:50234174-50234193 None:intergenic 75.0%
! CCTGTTCGCGTGTCGGCCGG+CGG - chr5_2:50234185-50234204 None:intergenic 75.0%
! CCGCCGGCCGACACGCGAAC+AGG + chr5_2:50234182-50234201 Msa0774250:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 50229493 50234442 50229493 ID=Msa0774250;Name=Msa0774250
chr5_2 mRNA 50229493 50234442 50229493 ID=Msa0774250-mRNA-1;Parent=Msa0774250;Name=Msa0774250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=8|1|1|1|0.8|0.66|6|173|478
chr5_2 exon 50229493 50229908 50229493 ID=Msa0774250-mRNA-1:exon:14961;Parent=Msa0774250-mRNA-1
chr5_2 exon 50231647 50231907 50231647 ID=Msa0774250-mRNA-1:exon:14962;Parent=Msa0774250-mRNA-1
chr5_2 exon 50232016 50232114 50232016 ID=Msa0774250-mRNA-1:exon:14963;Parent=Msa0774250-mRNA-1
chr5_2 exon 50232851 50233141 50232851 ID=Msa0774250-mRNA-1:exon:14964;Parent=Msa0774250-mRNA-1
chr5_2 exon 50233871 50234264 50233871 ID=Msa0774250-mRNA-1:exon:14965;Parent=Msa0774250-mRNA-1
chr5_2 exon 50234286 50234442 50234286 ID=Msa0774250-mRNA-1:exon:14966;Parent=Msa0774250-mRNA-1
chr5_2 five_prime_UTR 50229493 50229500 50229493 ID=Msa0774250-mRNA-1:five_prime_utr;Parent=Msa0774250-mRNA-1
chr5_2 CDS 50229501 50229908 50229501 ID=Msa0774250-mRNA-1:cds;Parent=Msa0774250-mRNA-1
chr5_2 CDS 50231647 50231907 50231647 ID=Msa0774250-mRNA-1:cds;Parent=Msa0774250-mRNA-1
chr5_2 CDS 50232016 50232114 50232016 ID=Msa0774250-mRNA-1:cds;Parent=Msa0774250-mRNA-1
chr5_2 CDS 50232851 50233141 50232851 ID=Msa0774250-mRNA-1:cds;Parent=Msa0774250-mRNA-1
chr5_2 CDS 50233871 50234248 50233871 ID=Msa0774250-mRNA-1:cds;Parent=Msa0774250-mRNA-1
chr5_2 three_prime_UTR 50234249 50234264 50234249 ID=Msa0774250-mRNA-1:three_prime_utr;Parent=Msa0774250-mRNA-1
chr5_2 three_prime_UTR 50234286 50234442 50234286 ID=Msa0774250-mRNA-1:three_prime_utr;Parent=Msa0774250-mRNA-1
Gene Sequence

>Msa0774250

ATGGAACCACATCTAAATGCAGCCTCCATTCTCAGAACCAGCAGGAACATACCATATTCTTGTCTTCCTCAACCATTCCTGTCTCTTACTACAAGGATGCTGTCTTCTTCACCATCATCTTCATCTTCTTCAACAACCCCTTCATCTGAAACCAGAACAAGTCACTCTTCTTCAAACCCTAACCCTTCATTCAAAAACCTCTCTCTATTCTCCAACACTCATTCTCTTCAAAGCATGACGCTTTCTAAGTGTTTCTCTCACTCTGGACCCAATAATGCAATACCAGTTTCTGGGTTGGTTGAATCTGGTGAAATGGAATCTCTTGTTGTGGTTTCGTTTTATAAGTTTGCGGATTTCCCTGATCATGCTGTTTTGCGTGTGCCCTTGAAGCAATTATGTCAACAACTGCGTGTTTCAGGCGGTATCATTCTTGCGCCTGAAGGAATTAATGGCAGCCTATGCGGTACGCGGGAGTCGGTGGAGAAAGTTCTTGCATTTATTCAGAGTGATGATCGTCTGAAGGGGCTAAGACGTATTGAATCGCCTGTCAGTCCTGAGGAGGAGGCCATCCATCACGGTAATCATGGACACAGTGCCAGTTCTCCTCTTGCTGCTGGCGAAGACGCACCTTTCCGATGGGATCATGTTAGAGTCAAGTTGAAGAAAGAGATTGTCACTCTTGGGATGCCTACGGTATCACCTATTGAAAGGGTTGGAAAATATATTGGCGCAAAGGAGTGGAATTCTTTGATTAGCGATCCTGATACTGTGGTAATTGATGTGCGGAATAACTACGAAACAAGAATAGGAAAGTTTAAAGGAGCAGTTGATCCTTGTACGACATCATTTCGTGAATTCCCATCTTGGGTTGAGGAACGTTTCGAGCTTACCAGAAAAGATGCTGAACATCCAAAAGATGATGTAAACCATTCAGACCAAAGTGCTGAAAAAGAAACGAAGAATCAGAAACAACATTTGCCACGTGTTGCTATGTATTGCACCGGGGGTATTCGTTGTGAGAAAGCTTCAAGTCTACTTCTTAGCAAAGGTTTCAAAGAGGTTTATCACCTGGAAGGTGGGATCCTGAAATATCTTGAGGAAGTTCCGGAGAGACAAAGCCTTTGGGAGGGAGAGTGCTTTGTTTTCGACAAGAGAGTCTCTGTCGAGCATGGTTTGGCACAAGGAAATTTCAAGCTGTGCTATGGTTGTAAGCAGCCTGTGAGTGATGCTGACATGGAATCCCCAGAATATGAATATGGAGTCTCCTGTCCTTACTGTTTTGCACAGAAATCGGAAGAAGAAAAGGAGAGGGCTCGAGCTCGACAAAAACAATTTGAGAGATGGGGGATCATAGGTGGTCCTGATAAGGGCCGCCGGCCGACACGCGAACAGGACAGTGCTAGCAGGGATGAAAATCAACTTTCAAAGTCTGTTTAA

Protein sequence

>Msa0774250

MEPHLNAASILRTSRNIPYSCLPQPFLSLTTRMLSSSPSSSSSSTTPSSETRTSHSSSNPNPSFKNLSLFSNTHSLQSMTLSKCFSHSGPNNAIPVSGLVESGEMESLVVVSFYKFADFPDHAVLRVPLKQLCQQLRVSGGIILAPEGINGSLCGTRESVEKVLAFIQSDDRLKGLRRIESPVSPEEEAIHHGNHGHSASSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPIERVGKYIGAKEWNSLISDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEERFELTRKDAEHPKDDVNHSDQSAEKETKNQKQHLPRVAMYCTGGIRCEKASSLLLSKGFKEVYHLEGGILKYLEEVPERQSLWEGECFVFDKRVSVEHGLAQGNFKLCYGCKQPVSDADMESPEYEYGVSCPYCFAQKSEEEKERARARQKQFERWGIIGGPDKGRRPTREQDSASRDENQLSKSV*