AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0656050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656050 MtrunA17_Chr4g0026281 98.333 120 2 0 1 120 1 120 9.98e-83 237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656050 AT2G27730.2 58.197 122 39 5 1 119 1 113 5.35e-30 104
Msa0656050 AT2G27730.3 58.197 122 39 5 1 119 1 113 5.35e-30 104
Msa0656050 AT2G27730.1 58.197 122 39 5 1 119 1 113 5.35e-30 104
Msa0656050 AT2G27730.4 58.197 122 39 5 1 119 1 113 5.35e-30 104

Find 66 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTTTGCAGTGCCTTTA+AGG 0.112066 4_3:+65111452 None:intergenic
CTTCAATCCTCCTGCACTTC+TGG 0.200917 4_3:+65111430 None:intergenic
GCCTTAGGTTGGTACCTTAA+AGG 0.213610 4_3:-65111466 Msa0656050:CDS
CCTGCAGCTGGTGTTGCTTC+TGG 0.232336 4_3:+65111616 None:intergenic
GTAAAACATTGTAAACAAAA+AGG 0.257575 4_3:+65111290 None:intergenic
AGTGACAAATACCGGAATTA+TGG 0.295334 4_3:-65111520 Msa0656050:CDS
GTGAAGGATACTCAATTATA+AGG 0.339273 4_3:-65111123 Msa0656050:three_prime_UTR
TAAGTGACATTATGAATATA+CGG 0.345784 4_3:+65111259 None:intergenic
AGAGTGAGGGTTCGTTAGAA+AGG 0.370853 4_3:+65117278 None:intergenic
TGTTATCATCTGGTATTCAT+TGG 0.371862 4_3:-65111215 Msa0656050:three_prime_UTR
GCAACACCAGCTGCAGGTTC+AGG 0.372347 4_3:-65111610 Msa0656050:CDS
GCTGGTGTTGCTTCTGGTTG+AGG 0.375661 4_3:+65111622 None:intergenic
GAAAGCTGAGCAAGAGAAGT+TGG 0.381787 4_3:-65115179 Msa0656050:CDS
GTGGCATTTCAACAGAAGTT+AGG 0.390818 4_3:-65111087 Msa0656050:three_prime_UTR
GTATTTGTCACTTGAAACTT+TGG 0.390932 4_3:+65111531 None:intergenic
AGGCTATTTAGCAGTGGCTC+TGG 0.405468 4_3:-65116664 Msa0656050:CDS
CAACACAACACAACACAATC+TGG 0.420954 4_3:-65117255 Msa0656050:intron
ATTCTAAACCCTTCACTTCA+AGG 0.430113 4_3:+65117344 None:intergenic
CTCAAAATTATGTTATCATC+TGG 0.430285 4_3:-65111225 Msa0656050:three_prime_UTR
TATTTGTCACTTGAAACTTT+GGG 0.432133 4_3:+65111532 None:intergenic
CGGAATTATGGAGTCGTAGC+TGG 0.436209 4_3:-65111508 Msa0656050:CDS
CAGCTACGACTCCATAATTC+CGG 0.436283 4_3:+65111509 None:intergenic
ATGTCCAGAGCCACTTGGTT+TGG 0.438617 4_3:+65111570 None:intergenic
TGCAAAGAAGCCAGAAGTGC+AGG 0.445155 4_3:-65111440 Msa0656050:CDS
ATGATGAGAGAATTTGAGAT+TGG 0.445554 4_3:-65111180 Msa0656050:three_prime_UTR
TTCTAAACCCTTCACTTCAA+GGG 0.455383 4_3:+65117345 None:intergenic
TGCGGAAAATGCTTACTTCA+AGG 0.458195 4_3:-65116614 Msa0656050:intron
TTGGTATATGTTGCTTGAGC+TGG 0.475610 4_3:-65111161 Msa0656050:three_prime_UTR
CAGCAAGATTTGCATCTAGA+AGG 0.476156 4_3:-65116684 Msa0656050:CDS
AGTGGCTCTGGGAAAGTTCT+CGG 0.478650 4_3:-65116652 Msa0656050:CDS
GGCTATTTAGCAGTGGCTCT+GGG 0.480604 4_3:-65116663 Msa0656050:CDS
GATGCCAAACCAAGTGGCTC+TGG 0.486204 4_3:-65111574 Msa0656050:CDS
TTTCTACTCAATTATTTGAA+AGG 0.487944 4_3:-65111034 Msa0656050:three_prime_UTR
GTTGGAGAAGCTTGCTCGCA+AGG 0.496581 4_3:-65115161 Msa0656050:intron
TTGTGTTGTGTTGAGAGTGA+GGG 0.506147 4_3:+65117265 None:intergenic
AAGTGACATTATGAATATAC+GGG 0.511357 4_3:+65111260 None:intergenic
TAAACAACCCCTTGAAGTGA+AGG 0.512395 4_3:-65117353 Msa0656050:five_prime_UTR
GTGTTGCTTAAACAAGTTGA+AGG 0.512985 4_3:-65110887 Msa0656050:three_prime_UTR
AATCCATGCTAACAGTATGA+TGG 0.517136 4_3:+65111317 None:intergenic
TCTGGACATTCTGATACATC+AGG 0.522144 4_3:-65111556 Msa0656050:CDS
AAGTTTCAAGTGACAAATAC+CGG 0.523388 4_3:-65111528 Msa0656050:CDS
AGAGCCACTTGGTTTGGCAT+CGG 0.530012 4_3:+65111576 None:intergenic
ATTCCATCATACTGTTAGCA+TGG 0.530985 4_3:-65111320 Msa0656050:three_prime_UTR
AGGATTGAAGATTTCAGTTG+TGG 0.533949 4_3:-65111417 Msa0656050:exon
CATCTGGTATTCATTGGCAA+TGG 0.538596 4_3:-65111209 Msa0656050:three_prime_UTR
GCCTTTAAGGTACCAACCTA+AGG 0.543907 4_3:+65111465 None:intergenic
GTTGTGTTGTGTTGAGAGTG+AGG 0.551002 4_3:+65117264 None:intergenic
CCAGAAGCAACACCAGCTGC+AGG 0.553579 4_3:-65111616 Msa0656050:CDS
AAACAACCCCTTGAAGTGAA+GGG 0.560795 4_3:-65117352 Msa0656050:five_prime_UTR
TCTAAACCCTTCACTTCAAG+GGG 0.564697 4_3:+65117346 None:intergenic
AACTGACAGCAATGGCAACA+CGG 0.581700 4_3:-65116711 Msa0656050:exon
ACTGACAGCAATGGCAACAC+GGG 0.584119 4_3:-65116710 Msa0656050:exon
ATAAGGAAAATCACATTGAG+TGG 0.589683 4_3:-65111106 Msa0656050:three_prime_UTR
TGGGAAAGTTCTCGGTGAGG+AGG 0.595471 4_3:-65116644 Msa0656050:CDS
GAACCACCTGAACCTGCAGC+TGG 0.596837 4_3:+65111604 None:intergenic
TCAGAATGTCCAGAGCCACT+TGG 0.611946 4_3:+65111565 None:intergenic
GCATTGAGCAAGAACTGTGA+AGG 0.622869 4_3:-65111139 Msa0656050:three_prime_UTR
ACACCAGCTGCAGGTTCAGG+TGG 0.626643 4_3:-65111607 Msa0656050:CDS
CTCTGGGAAAGTTCTCGGTG+AGG 0.634132 4_3:-65116647 Msa0656050:CDS
AAAGAAGCCAGAAGTGCAGG+AGG 0.635650 4_3:-65111437 Msa0656050:CDS
GACAGCAATGGCAACACGGG+TGG 0.644840 4_3:-65116707 Msa0656050:exon
TCTAGAAGGCTATTTAGCAG+TGG 0.663582 4_3:-65116670 Msa0656050:CDS
GAAAGGAAGCAAAAGAAGTG+TGG 0.680164 4_3:+65117295 None:intergenic
GTAACCGATGCCAAACCAAG+TGG 0.684341 4_3:-65111580 Msa0656050:CDS
TATGATGGAATAAAGCAGAG+TGG 0.735765 4_3:+65111332 None:intergenic
AGTGACATTATGAATATACG+GGG 0.751726 4_3:+65111261 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTAATATTTTATTTTT+TGG + chr4_3:65114925-65114944 None:intergenic 0.0%
!! GAAAAATAGATAAAATTAAA+GGG - chr4_3:65113402-65113421 Msa0656050:intron 10.0%
!! AGATTGTTATAAATTATAAA+GGG + chr4_3:65114510-65114529 None:intergenic 10.0%
!! AAATAAAATTGCTAATTATT+TGG + chr4_3:65116210-65116229 None:intergenic 10.0%
!!! TAAAACATGTTTAAAATCAT+TGG - chr4_3:65112148-65112167 Msa0656050:intron 15.0%
!! GGAAAAATAGATAAAATTAA+AGG - chr4_3:65113401-65113420 Msa0656050:intron 15.0%
!!! TTTATTTTTGGGATTTAAAT+GGG + chr4_3:65113914-65113933 None:intergenic 15.0%
!!! TTTTATTTTTGGGATTTAAA+TGG + chr4_3:65113915-65113934 None:intergenic 15.0%
!! ATATTCAATTTCCTAATAAA+CGG + chr4_3:65114016-65114035 None:intergenic 15.0%
!! TAAATTATAAAGGGTAAAAA+GGG + chr4_3:65114501-65114520 None:intergenic 15.0%
!! ATAAATTATAAAGGGTAAAA+AGG + chr4_3:65114502-65114521 None:intergenic 15.0%
!! CAGATTGTTATAAATTATAA+AGG + chr4_3:65114511-65114530 None:intergenic 15.0%
!! TAAATGTAAAATGACATAAA+AGG + chr4_3:65115045-65115064 None:intergenic 15.0%
!! TAAATTATAATCATCGTTTA+TGG + chr4_3:65115255-65115274 None:intergenic 15.0%
!! AAAATATAAACTTGAGAAAA+TGG - chr4_3:65115974-65115993 Msa0656050:intron 15.0%
!!! TGTTTTTTTTAATTTCGTTT+TGG - chr4_3:65116819-65116838 Msa0656050:intron 15.0%
!!! GTTTTTTTTAATTTCGTTTT+GGG - chr4_3:65116820-65116839 Msa0656050:intron 15.0%
!! TAAAACATTGTAAACAAAAA+GGG + chr4_3:65116921-65116940 None:intergenic 15.0%
!!! ATGAGTTGTATATTTATTTT+TGG - chr4_3:65117288-65117307 Msa0656050:five_prime_UTR 15.0%
!!! AAAATTCATGTTTTTTGATA+TGG - chr4_3:65117345-65117364 Msa0656050:five_prime_UTR 15.0%
!!! AAATTCATGTTTTTTGATAT+GGG - chr4_3:65117346-65117365 Msa0656050:five_prime_UTR 15.0%
!! TAACTCTTAAATACTTAACA+AGG + chr4_3:65111225-65111244 None:intergenic 20.0%
!! TAAGTATTTAAGAGTTAAAG+TGG - chr4_3:65111228-65111247 Msa0656050:three_prime_UTR 20.0%
!! AAGTATTTAAGAGTTAAAGT+GGG - chr4_3:65111229-65111248 Msa0656050:three_prime_UTR 20.0%
!! TTGAAGTACATTAATAAAAG+TGG - chr4_3:65111321-65111340 Msa0656050:three_prime_UTR 20.0%
!! TGAAGTACATTAATAAAAGT+GGG - chr4_3:65111322-65111341 Msa0656050:three_prime_UTR 20.0%
!!! TTTATTTTCGTAATTGCTAT+CGG - chr4_3:65111667-65111686 Msa0656050:intron 20.0%
!!! TTTTAGAAATTAGAAGGATT+TGG + chr4_3:65112133-65112152 None:intergenic 20.0%
!!! AACATGTTTTAGAAATTAGA+AGG + chr4_3:65112139-65112158 None:intergenic 20.0%
!!! ATTTTAAAAAGGAAATGCTA+TGG - chr4_3:65112215-65112234 Msa0656050:intron 20.0%
!! AAAATTTAACTGCATCAAAA+AGG + chr4_3:65112308-65112327 None:intergenic 20.0%
!!! TATTTCAAATGATTTCGTTT+TGG - chr4_3:65112333-65112352 Msa0656050:intron 20.0%
!!! TATTTCAAATGATTTCGTTT+TGG - chr4_3:65112333-65112352 Msa0656050:intron 20.0%
!! TTATAGTCTATAAGTAATGT+GGG + chr4_3:65112587-65112606 None:intergenic 20.0%
!! TAGACTATAAGTTATAGATA+TGG - chr4_3:65112597-65112616 Msa0656050:intron 20.0%
!! ACATGCTTGTATAAATATAA+AGG - chr4_3:65112861-65112880 Msa0656050:intron 20.0%
!!! AAGTTTTTATCAGTTTTTGT+GGG - chr4_3:65113208-65113227 Msa0656050:intron 20.0%
!! ACATTTAGTACTTATTTGAT+GGG + chr4_3:65113462-65113481 None:intergenic 20.0%
!! TACATTTAGTACTTATTTGA+TGG + chr4_3:65113463-65113482 None:intergenic 20.0%
!!! TTGTCATTTTGTTTACTTTT+AGG + chr4_3:65113524-65113543 None:intergenic 20.0%
!!! CTTTTAGAACTTGATTTTAA+TGG + chr4_3:65113548-65113567 None:intergenic 20.0%
!! TCCCAAAAATAAAATACTAA+AGG - chr4_3:65113921-65113940 Msa0656050:intron 20.0%
!!! GCCTTTAGTATTTTATTTTT+GGG + chr4_3:65113925-65113944 None:intergenic 20.0%
!!! TGCCTTTAGTATTTTATTTT+TGG + chr4_3:65113926-65113945 None:intergenic 20.0%
!! TATTCAATTTCCTAATAAAC+GGG + chr4_3:65114015-65114034 None:intergenic 20.0%
!!! ATTATCACTCTTAATCTTTT+GGG + chr4_3:65114185-65114204 None:intergenic 20.0%
!!! TATTATCACTCTTAATCTTT+TGG + chr4_3:65114186-65114205 None:intergenic 20.0%
!! CATATTAAGTATAAGTATGT+GGG + chr4_3:65114231-65114250 None:intergenic 20.0%
!! TCATATTAAGTATAAGTATG+TGG + chr4_3:65114232-65114251 None:intergenic 20.0%
!! AATATGATACAAGATAGATA+TGG - chr4_3:65114245-65114264 Msa0656050:intron 20.0%
!! ATATGATACAAGATAGATAT+GGG - chr4_3:65114246-65114265 Msa0656050:intron 20.0%
!!! TAAGCTATAAGCTAAATTTT+GGG + chr4_3:65114302-65114321 None:intergenic 20.0%
!!! ATAAGCTATAAGCTAAATTT+TGG + chr4_3:65114303-65114322 None:intergenic 20.0%
!!! GATTTTAGATAAAATAGCAA+GGG + chr4_3:65114479-65114498 None:intergenic 20.0%
!! AAATCATGTGACAAAAAAAT+GGG + chr4_3:65114572-65114591 None:intergenic 20.0%
!! AAAATCATGTGACAAAAAAA+TGG + chr4_3:65114573-65114592 None:intergenic 20.0%
!! AAACTATCTATATTGCTAAA+TGG + chr4_3:65114602-65114621 None:intergenic 20.0%
!! GAATATAATAAGTATCCAAT+TGG - chr4_3:65114694-65114713 Msa0656050:intron 20.0%
!! CCTAAAAAATAAAAACCAAT+TGG + chr4_3:65114712-65114731 None:intergenic 20.0%
!!! CCAATTGGTTTTTATTTTTT+AGG - chr4_3:65114709-65114728 Msa0656050:intron 20.0%
!! CAAAAATATTAAAAGTGAAG+AGG + chr4_3:65114832-65114851 None:intergenic 20.0%
!!! CTCTTCACTTTTAATATTTT+TGG - chr4_3:65114830-65114849 Msa0656050:intron 20.0%
!! ATATAGTTTAATATGTACAG+CGG + chr4_3:65115323-65115342 None:intergenic 20.0%
!!! TACTCTTTTGATATAAATCT+TGG - chr4_3:65115540-65115559 Msa0656050:intron 20.0%
!! TATGTATATGTAATCAGATA+TGG - chr4_3:65115570-65115589 Msa0656050:intron 20.0%
!! ATGTATATGTAATCAGATAT+GGG - chr4_3:65115571-65115590 Msa0656050:intron 20.0%
!! CAATGAAATGTATTTAAGTA+AGG - chr4_3:65115907-65115926 Msa0656050:intron 20.0%
!!! AAGAGATATTTTTTAGCAAT+TGG - chr4_3:65115944-65115963 Msa0656050:intron 20.0%
!!! CGTTTTATTATAACCTTAAA+AGG + chr4_3:65116141-65116160 None:intergenic 20.0%
!! GTAAAACATTGTAAACAAAA+AGG + chr4_3:65116922-65116941 None:intergenic 20.0%
!! TAAGTGACATTATGAATATA+CGG + chr4_3:65116953-65116972 None:intergenic 20.0%
!! TTTCTACTCAATTATTTGAA+AGG - chr4_3:65117175-65117194 Msa0656050:intron 20.0%
!! TTTCTCTTTTTCTCTAATGT+TGG - chr4_3:65110980-65110999 Msa0656050:three_prime_UTR 25.0%
!! TTCTCTTTTTCTCTAATGTT+GGG - chr4_3:65110981-65111000 Msa0656050:three_prime_UTR 25.0%
!! TCAAAGTTGATTCAATAAAG+TGG + chr4_3:65111305-65111324 None:intergenic 25.0%
! ATAAATTAAAGCATGCTTTG+AGG + chr4_3:65111624-65111643 None:intergenic 25.0%
!! AATGGTTAAAAAAGTGCATA+TGG - chr4_3:65112039-65112058 Msa0656050:intron 25.0%
! ATTTAACTGCATCAAAATGA+AGG + chr4_3:65112404-65112423 None:intergenic 25.0%
! CTTATAGTCTATAAGTAATG+TGG + chr4_3:65112588-65112607 None:intergenic 25.0%
! ATTTCTTAGAATTTGTGGTT+GGG + chr4_3:65112691-65112710 None:intergenic 25.0%
! TATTTCTTAGAATTTGTGGT+TGG + chr4_3:65112692-65112711 None:intergenic 25.0%
! GAATAAGAGATGAAATTTGA+GGG + chr4_3:65113078-65113097 None:intergenic 25.0%
! AGAATAAGAGATGAAATTTG+AGG + chr4_3:65113079-65113098 None:intergenic 25.0%
!! GAAGTTTTTATCAGTTTTTG+TGG - chr4_3:65113207-65113226 Msa0656050:intron 25.0%
! TGAGTATTTATGTATCTTGT+TGG + chr4_3:65113376-65113395 None:intergenic 25.0%
! GATACATAAATACTCAAAAG+TGG - chr4_3:65113380-65113399 Msa0656050:intron 25.0%
! GGAACTTATAATTGAAGATA+AGG + chr4_3:65113603-65113622 None:intergenic 25.0%
! CAAGATAATATTGATGTATG+CGG + chr4_3:65113627-65113646 None:intergenic 25.0%
! ATATTATCTTGTTCATCACT+TGG - chr4_3:65113636-65113655 Msa0656050:intron 25.0%
! TGTAAAAATGAGACGATTAA+TGG + chr4_3:65114149-65114168 None:intergenic 25.0%
!!! TTAATCGTCTCATTTTTACA+TGG - chr4_3:65114149-65114168 Msa0656050:intron 25.0%
!! GGATTTTAGATAAAATAGCA+AGG + chr4_3:65114480-65114499 None:intergenic 25.0%
!! GATAAGCTAATTAAAGTGTT+TGG + chr4_3:65115093-65115112 None:intergenic 25.0%
! ATAATCATCGTTTATGGATA+AGG + chr4_3:65115249-65115268 None:intergenic 25.0%
! ATTTGCATGATATCTTCATA+GGG + chr4_3:65115351-65115370 None:intergenic 25.0%
! AATTTGCATGATATCTTCAT+AGG + chr4_3:65115352-65115371 None:intergenic 25.0%
! GATTTCCTTAAAAAAACTAG+AGG - chr4_3:65115516-65115535 Msa0656050:intron 25.0%
!!! AGTATCCTCTAGTTTTTTTA+AGG + chr4_3:65115524-65115543 None:intergenic 25.0%
!! ATCTAAAATGAAAATGCTTC+AGG + chr4_3:65115663-65115682 None:intergenic 25.0%
! AATAACATGGTTATTGAGAA+AGG + chr4_3:65115853-65115872 None:intergenic 25.0%
! ATCATCTAGTTACAATAACA+TGG + chr4_3:65115866-65115885 None:intergenic 25.0%
! TACTTACAACTCTTAACTAA+AGG - chr4_3:65116183-65116202 Msa0656050:intron 25.0%
! GTCTTTCATTTAGTAGAAAA+AGG + chr4_3:65116251-65116270 None:intergenic 25.0%
! CTACTAAATGAAAGACTTAT+AGG - chr4_3:65116255-65116274 Msa0656050:intron 25.0%
! ATTGACATAAGTTAGAGAAA+CGG + chr4_3:65116313-65116332 None:intergenic 25.0%
! AATGCTTAACATTAAGTTCA+AGG + chr4_3:65116549-65116568 None:intergenic 25.0%
! AAGCATTTATGTTCTAATGT+AGG - chr4_3:65116562-65116581 Msa0656050:intron 25.0%
! AGCATTTATGTTCTAATGTA+GGG - chr4_3:65116563-65116582 Msa0656050:intron 25.0%
!! TATTTGTCACTTGAAACTTT+GGG + chr4_3:65116680-65116699 None:intergenic 25.0%
! AAGTGACATTATGAATATAC+GGG + chr4_3:65116952-65116971 None:intergenic 25.0%
!! CAGATGATAACATAATTTTG+AGG + chr4_3:65116986-65117005 None:intergenic 25.0%
! CTCAAAATTATGTTATCATC+TGG - chr4_3:65116984-65117003 Msa0656050:intron 25.0%
!!! ATATTTATTTTTGGCTATGC+TGG - chr4_3:65117297-65117316 Msa0656050:five_prime_UTR 25.0%
! TCTCTTTTTCTCTAATGTTG+GGG - chr4_3:65110982-65111001 Msa0656050:three_prime_UTR 30.0%
GTAAAATACGTGTGAATTTC+TGG - chr4_3:65111189-65111208 Msa0656050:three_prime_UTR 30.0%
! TTTTGATGTCAGTGTAAAAC+AGG - chr4_3:65111372-65111391 Msa0656050:three_prime_UTR 30.0%
CTTAAAGAATATACACAGTC+AGG + chr4_3:65111407-65111426 None:intergenic 30.0%
AAGTAAAAAACTGACAGCAA+TGG - chr4_3:65111490-65111509 Msa0656050:CDS 30.0%
ATTATTATCAGTGTCTTGTC+CGG - chr4_3:65111906-65111925 Msa0656050:intron 30.0%
!! TGAGGTGTTTTCTTTGTAAT+TGG - chr4_3:65111972-65111991 Msa0656050:intron 30.0%
!! GAGGTGTTTTCTTTGTAATT+GGG - chr4_3:65111973-65111992 Msa0656050:intron 30.0%
! AGGTGTTTTCTTTGTAATTG+GGG - chr4_3:65111974-65111993 Msa0656050:intron 30.0%
ATAAATACCATTGCATGTTC+TGG - chr4_3:65111999-65112018 Msa0656050:intron 30.0%
GATTCTCTTTGTCATTCTAA+TGG - chr4_3:65112021-65112040 Msa0656050:intron 30.0%
!!! AAATGATTTCGTTTTGGCTA+TGG - chr4_3:65112339-65112358 Msa0656050:intron 30.0%
!!! AAATGATTTCGTTTTGGCTA+TGG - chr4_3:65112339-65112358 Msa0656050:intron 30.0%
ATTCTTTATGAACACTACAC+AGG + chr4_3:65112623-65112642 None:intergenic 30.0%
TGTGTAGTGTTCATAAAGAA+TGG - chr4_3:65112622-65112641 Msa0656050:intron 30.0%
!! AGGCTATTTCTTAGAATTTG+TGG + chr4_3:65112696-65112715 None:intergenic 30.0%
TTAGAAATTAGAAGAACCCA+AGG + chr4_3:65112748-65112767 None:intergenic 30.0%
!!! AATCTTTTTCAATTGCACTG+TGG - chr4_3:65113102-65113121 Msa0656050:intron 30.0%
!! ACTTGAAAGTACTTAACCTT+TGG - chr4_3:65113135-65113154 Msa0656050:intron 30.0%
!! CTTGAAAGTACTTAACCTTT+GGG - chr4_3:65113136-65113155 Msa0656050:intron 30.0%
ACAATGTGTAGGATGATATT+GGG + chr4_3:65113176-65113195 None:intergenic 30.0%
AACAATGTGTAGGATGATAT+TGG + chr4_3:65113177-65113196 None:intergenic 30.0%
TCAATCAGAAAACAATGTGT+AGG + chr4_3:65113187-65113206 None:intergenic 30.0%
! TTTTTATCAGTTTTTGTGGG+TGG - chr4_3:65113211-65113230 Msa0656050:intron 30.0%
! CTATCTAGGATTAACAACAT+AGG + chr4_3:65113276-65113295 None:intergenic 30.0%
ATGTTGTTAATCCTAGATAG+TGG - chr4_3:65113276-65113295 Msa0656050:intron 30.0%
ATAAGTACAACCCGTTTATT+AGG - chr4_3:65114002-65114021 Msa0656050:intron 30.0%
AATTGTGATCTCTTAGTGTT+AGG - chr4_3:65114050-65114069 Msa0656050:intron 30.0%
TGAAGTTTGTACACAGTTAA+CGG - chr4_3:65114075-65114094 Msa0656050:intron 30.0%
!! ACTCTTAATCTTTTGGGAAA+TGG + chr4_3:65114179-65114198 None:intergenic 30.0%
TTGACAAAAAAAGCTCTGTT+TGG - chr4_3:65114338-65114357 Msa0656050:intron 30.0%
AAAAAAGCTCTGTTTGGTAA+AGG - chr4_3:65114344-65114363 Msa0656050:intron 30.0%
ATAAATAAGCTATAAGCTCG+TGG + chr4_3:65114377-65114396 None:intergenic 30.0%
!!! GCGTTGCTTATTTTTTTTGA+AGG - chr4_3:65114749-65114768 Msa0656050:intron 30.0%
! AAAGTGTTTGGTAAAACTAG+CGG + chr4_3:65115081-65115100 None:intergenic 30.0%
! TTTTTGTAACAATGTACCCA+TGG + chr4_3:65115186-65115205 None:intergenic 30.0%
! ATACATGCTCATTTTGTTAG+TGG + chr4_3:65115390-65115409 None:intergenic 30.0%
TCACAATATGATGAAGAACT+TGG - chr4_3:65115421-65115440 Msa0656050:intron 30.0%
GAATCGTATTCCAAACATAT+GGG - chr4_3:65115488-65115507 Msa0656050:intron 30.0%
AAATCATTGACCCATATGTT+TGG + chr4_3:65115501-65115520 None:intergenic 30.0%
CACATGACAAAAGCAAATTT+CGG + chr4_3:65115780-65115799 None:intergenic 30.0%
!! AAATTTGCTTTTGTCATGTG+TGG - chr4_3:65115780-65115799 Msa0656050:intron 30.0%
TATTGTAACTAGATGATGCT+TGG - chr4_3:65115869-65115888 Msa0656050:intron 30.0%
TATTTAAGTAAGGTGACACA+AGG - chr4_3:65115917-65115936 Msa0656050:intron 30.0%
CATTTAGTAGAAAAAGGAAG+TGG + chr4_3:65116245-65116264 None:intergenic 30.0%
! ATGTGACAAAAAGAAAGTGT+CGG + chr4_3:65116362-65116381 None:intergenic 30.0%
GATAGAAAGAGAAGAGAAAT+GGG + chr4_3:65116458-65116477 None:intergenic 30.0%
AGATAGAAAGAGAAGAGAAA+TGG + chr4_3:65116459-65116478 None:intergenic 30.0%
TGCATACTACAAGAAATAAC+TGG + chr4_3:65116508-65116527 None:intergenic 30.0%
! GTATTTGTCACTTGAAACTT+TGG + chr4_3:65116681-65116700 None:intergenic 30.0%
! AAGTTTCAAGTGACAAATAC+CGG - chr4_3:65116681-65116700 Msa0656050:CDS 30.0%
! TGGCACTATAACAATTTTTG+CGG - chr4_3:65116721-65116740 Msa0656050:exon 30.0%
AGTGACATTATGAATATACG+GGG + chr4_3:65116951-65116970 None:intergenic 30.0%
TGTTATCATCTGGTATTCAT+TGG - chr4_3:65116994-65117013 Msa0656050:intron 30.0%
! ATGATGAGAGAATTTGAGAT+TGG - chr4_3:65117029-65117048 Msa0656050:intron 30.0%
GTGAAGGATACTCAATTATA+AGG - chr4_3:65117086-65117105 Msa0656050:intron 30.0%
ATAAGGAAAATCACATTGAG+TGG - chr4_3:65117103-65117122 Msa0656050:intron 30.0%
! ATTTTTGTTACAACAGCTTG+TGG - chr4_3:65117242-65117261 Msa0656050:intron 30.0%
!!! TTCATGTTTTTTGATATGGG+TGG - chr4_3:65117349-65117368 Msa0656050:five_prime_UTR 30.0%
TTCTAAACCCTTCACTTCAA+GGG + chr4_3:65110867-65110886 None:intergenic 35.0%
ATTCTAAACCCTTCACTTCA+AGG + chr4_3:65110868-65110887 None:intergenic 35.0%
CTAGATCTCATCAAGTTTCA+GGG + chr4_3:65111166-65111185 None:intergenic 35.0%
ACTAGATCTCATCAAGTTTC+AGG + chr4_3:65111167-65111186 None:intergenic 35.0%
! AAATACGTGTGAATTTCTGG+TGG - chr4_3:65111192-65111211 Msa0656050:three_prime_UTR 35.0%
GGATGATGTTGCAAAATAGT+AGG - chr4_3:65111343-65111362 Msa0656050:three_prime_UTR 35.0%
!! GGTTGTAGGTTTTGGTATAA+TGG - chr4_3:65111688-65111707 Msa0656050:intron 35.0%
TGCGATACGATCACAAAAAA+CGG + chr4_3:65111727-65111746 None:intergenic 35.0%
CACTATTAATAGTACACCAC+AGG + chr4_3:65111781-65111800 None:intergenic 35.0%
TCAAGTATAACACACACCTT+GGG + chr4_3:65111955-65111974 None:intergenic 35.0%
TTTGGCTATGGCTAATATAC+TGG - chr4_3:65112351-65112370 Msa0656050:intron 35.0%
CTATGGCTAATATACTGGAA+TGG - chr4_3:65112356-65112375 Msa0656050:intron 35.0%
TTTGGCTATGGCTAATATAC+TGG - chr4_3:65112351-65112370 Msa0656050:intron 35.0%
CTATGGCTAATATACTGGAA+TGG - chr4_3:65112356-65112375 Msa0656050:intron 35.0%
! ATAGCCTTAGCCAAAGTATT+AGG - chr4_3:65112709-65112728 Msa0656050:intron 35.0%
! TAGCCTTAGCCAAAGTATTA+GGG - chr4_3:65112710-65112729 Msa0656050:intron 35.0%
!! GTCTGTTAGTTTGTTAGTTC+AGG - chr4_3:65112799-65112818 Msa0656050:intron 35.0%
GTTAACAAATGACAACCCAA+AGG + chr4_3:65113154-65113173 None:intergenic 35.0%
TGGGTGGAAAAATGATGAAT+CGG - chr4_3:65113227-65113246 Msa0656050:intron 35.0%
! AATCCTAGATAGTGGTATAG+CGG - chr4_3:65113284-65113303 Msa0656050:intron 35.0%
GATAATATTGATGTATGCGG+TGG + chr4_3:65113624-65113643 None:intergenic 35.0%
TTGGTGTGTTCACATGATAT+AGG - chr4_3:65113875-65113894 Msa0656050:intron 35.0%
TACTAAAGGCAGACACTTTA+TGG - chr4_3:65113935-65113954 Msa0656050:intron 35.0%
!! ATCGTCTCATTTTTACATGG+AGG - chr4_3:65114152-65114171 Msa0656050:intron 35.0%
GATATGGGATGAAGATATGA+AGG - chr4_3:65114261-65114280 Msa0656050:intron 35.0%
TAAAATAGCAAGGGCAAAAG+TGG + chr4_3:65114470-65114489 None:intergenic 35.0%
GCTCTGTTTGGTAAAAATAG+CGG + chr4_3:65115150-65115169 None:intergenic 35.0%
! TGCTCATTTTGTTAGTGGTT+CGG + chr4_3:65115385-65115404 None:intergenic 35.0%
GTTCTTCATCATATTGTGAG+AGG + chr4_3:65115420-65115439 None:intergenic 35.0%
CGAATCGTATTCCAAACATA+TGG - chr4_3:65115487-65115506 Msa0656050:intron 35.0%
ACAAAAGCAAATTTCGGCAT+GGG + chr4_3:65115774-65115793 None:intergenic 35.0%
AGTTGACGATAATCATGCTT+GGG + chr4_3:65116036-65116055 None:intergenic 35.0%
! AAAAGGTATATAACCCCCAA+AGG + chr4_3:65116124-65116143 None:intergenic 35.0%
! TGGGGGTTATATACCTTTTA+AGG - chr4_3:65116125-65116144 Msa0656050:intron 35.0%
!! TGTGACAAAAAGAAAGTGTC+GGG + chr4_3:65116361-65116380 None:intergenic 35.0%
ATGAAATGTGATAAGTGGTG+TGG + chr4_3:65116426-65116445 None:intergenic 35.0%
AGAGCATGAAATGTGATAAG+TGG + chr4_3:65116431-65116450 None:intergenic 35.0%
! TAAAAGTGTGTGATAGTTGC+AGG + chr4_3:65116482-65116501 None:intergenic 35.0%
AGTGACAAATACCGGAATTA+TGG - chr4_3:65116689-65116708 Msa0656050:CDS 35.0%
! ATAACAATTTTTGCGGCCTT+AGG - chr4_3:65116728-65116747 Msa0656050:five_prime_UTR 35.0%
AGGATTGAAGATTTCAGTTG+TGG - chr4_3:65116792-65116811 Msa0656050:intron 35.0%
! TATGATGGAATAAAGCAGAG+TGG + chr4_3:65116880-65116899 None:intergenic 35.0%
ATTCCATCATACTGTTAGCA+TGG - chr4_3:65116889-65116908 Msa0656050:intron 35.0%
AATCCATGCTAACAGTATGA+TGG + chr4_3:65116895-65116914 None:intergenic 35.0%
!! GTGTTGCTTAAACAAGTTGA+AGG - chr4_3:65117322-65117341 Msa0656050:five_prime_UTR 35.0%
AAACAACCCCTTGAAGTGAA+GGG - chr4_3:65110857-65110876 Msa0656050:three_prime_UTR 40.0%
TCTAAACCCTTCACTTCAAG+GGG + chr4_3:65110866-65110885 None:intergenic 40.0%
GAAAGGAAGCAAAAGAAGTG+TGG + chr4_3:65110917-65110936 None:intergenic 40.0%
TTGTGTTGTGTTGAGAGTGA+GGG + chr4_3:65110947-65110966 None:intergenic 40.0%
CAACACAACACAACACAATC+TGG - chr4_3:65110954-65110973 Msa0656050:three_prime_UTR 40.0%
CAGCAAGATTTGCATCTAGA+AGG - chr4_3:65111525-65111544 Msa0656050:CDS 40.0%
TCTAGAAGGCTATTTAGCAG+TGG - chr4_3:65111539-65111558 Msa0656050:CDS 40.0%
TGCGGAAAATGCTTACTTCA+AGG - chr4_3:65111595-65111614 Msa0656050:CDS 40.0%
! TCGTAATTGCTATCGGTTGT+AGG - chr4_3:65111674-65111693 Msa0656050:intron 40.0%
!! TTGCTATCGGTTGTAGGTTT+TGG - chr4_3:65111680-65111699 Msa0656050:intron 40.0%
CACAGGCAAGAAAAATACGA+AGG + chr4_3:65111764-65111783 None:intergenic 40.0%
! CTTCGTATTTTTCTTGCCTG+TGG - chr4_3:65111762-65111781 Msa0656050:intron 40.0%
GTTCAGTGTTCAACATGTGT+CGG - chr4_3:65111841-65111860 Msa0656050:intron 40.0%
TTCAACGTAATCGCATGTGT+CGG + chr4_3:65111887-65111906 None:intergenic 40.0%
ATTGACATAGACACAGACAC+CGG + chr4_3:65111928-65111947 None:intergenic 40.0%
CTCAAGTATAACACACACCT+TGG + chr4_3:65111956-65111975 None:intergenic 40.0%
CAAGGTGTGTGTTATACTTG+AGG - chr4_3:65111954-65111973 Msa0656050:intron 40.0%
AGAGAATCCAGAACATGCAA+TGG + chr4_3:65112009-65112028 None:intergenic 40.0%
TGAGCTGTATGTATGATCTC+TGG - chr4_3:65112071-65112090 Msa0656050:intron 40.0%
TTCATTGTGTCGGGTTTGAA+GGG - chr4_3:65112550-65112569 Msa0656050:intron 40.0%
!! AAAACCGGCTTTTATGGTGA+GGG + chr4_3:65112652-65112671 None:intergenic 40.0%
!! ACCATAAAAGCCGGTTTTGT+AGG - chr4_3:65112654-65112673 Msa0656050:intron 40.0%
!! CCATAAAAGCCGGTTTTGTA+GGG - chr4_3:65112655-65112674 Msa0656050:intron 40.0%
TGACCCTAATACTTTGGCTA+AGG + chr4_3:65112716-65112735 None:intergenic 40.0%
CACTTGTGACCCTAATACTT+TGG + chr4_3:65112722-65112741 None:intergenic 40.0%
AGAGCAGCAATCTACTTTCT+AGG + chr4_3:65112829-65112848 None:intergenic 40.0%
GTAAGCACCACAAATAGAAC+CGG + chr4_3:65112993-65113012 None:intergenic 40.0%
GGGTGGAAAAATGATGAATC+GGG - chr4_3:65113228-65113247 Msa0656050:intron 40.0%
ATACCGCTATACCACTATCT+AGG + chr4_3:65113290-65113309 None:intergenic 40.0%
ATAGTGGTATAGCGGTATAG+AGG - chr4_3:65113292-65113311 Msa0656050:intron 40.0%
TATAGCGGTATAGAGGATTG+TGG - chr4_3:65113299-65113318 Msa0656050:intron 40.0%
ATAGCGGTATAGAGGATTGT+GGG - chr4_3:65113300-65113319 Msa0656050:intron 40.0%
AAATGGAGATGAGGAGTTGA+AGG + chr4_3:65113683-65113702 None:intergenic 40.0%
TTCAACTCCTCATCTCCATT+TGG - chr4_3:65113682-65113701 Msa0656050:intron 40.0%
AGATTGCTATAGCGAATAGC+AGG - chr4_3:65113723-65113742 Msa0656050:intron 40.0%
GAAGATATGAAGGCTCTGTT+TGG - chr4_3:65114271-65114290 Msa0656050:intron 40.0%
CTATAAGCTCAAACGCTACT+TGG + chr4_3:65114431-65114450 None:intergenic 40.0%
! GCTCATTTTGTTAGTGGTTC+GGG + chr4_3:65115384-65115403 None:intergenic 40.0%
AGTTCAAACACGTTCTGCTA+TGG - chr4_3:65115725-65115744 Msa0656050:intron 40.0%
AACACGTTCTGCTATGGTTA+TGG - chr4_3:65115731-65115750 Msa0656050:intron 40.0%
GACAAAAGCAAATTTCGGCA+TGG + chr4_3:65115775-65115794 None:intergenic 40.0%
GAGTTGACGATAATCATGCT+TGG + chr4_3:65116037-65116056 None:intergenic 40.0%
AAATGTGATAAGTGGTGTGG+TGG + chr4_3:65116423-65116442 None:intergenic 40.0%
TCTGGACATTCTGATACATC+AGG - chr4_3:65116653-65116672 Msa0656050:CDS 40.0%
CATCTGGTATTCATTGGCAA+TGG - chr4_3:65117000-65117019 Msa0656050:intron 40.0%
! TTGGTATATGTTGCTTGAGC+TGG - chr4_3:65117048-65117067 Msa0656050:intron 40.0%
GTGGCATTTCAACAGAAGTT+AGG - chr4_3:65117122-65117141 Msa0656050:intron 40.0%
AGAGTGAGGGTTCGTTAGAA+AGG + chr4_3:65110934-65110953 None:intergenic 45.0%
GTTGTGTTGTGTTGAGAGTG+AGG + chr4_3:65110948-65110967 None:intergenic 45.0%
AACTGACAGCAATGGCAACA+CGG - chr4_3:65111498-65111517 Msa0656050:CDS 45.0%
GTCCTGACAACTCTGATCAA+AGG - chr4_3:65111815-65111834 Msa0656050:intron 45.0%
TGCCTTTGATCAGAGTTGTC+AGG + chr4_3:65111820-65111839 None:intergenic 45.0%
GTCTATGTCAATGCTTCCCA+AGG - chr4_3:65111936-65111955 Msa0656050:intron 45.0%
AGGCCGCAATTAGGAAAGTA+GGG + chr4_3:65112520-65112539 None:intergenic 45.0%
AAGGCCGCAATTAGGAAAGT+AGG + chr4_3:65112521-65112540 None:intergenic 45.0%
ACTTTCCTAATTGCGGCCTT+CGG - chr4_3:65112521-65112540 Msa0656050:intron 45.0%
CTTCAAACCCGACACAATGA+AGG + chr4_3:65112551-65112570 None:intergenic 45.0%
CTTCATTGTGTCGGGTTTGA+AGG - chr4_3:65112549-65112568 Msa0656050:intron 45.0%
TCATTGTGTCGGGTTTGAAG+GGG - chr4_3:65112551-65112570 Msa0656050:intron 45.0%
ACAACCCTCACCATAAAAGC+CGG - chr4_3:65112645-65112664 Msa0656050:intron 45.0%
!! CAAAACCGGCTTTTATGGTG+AGG + chr4_3:65112653-65112672 None:intergenic 45.0%
!! CCCTACAAAACCGGCTTTTA+TGG + chr4_3:65112658-65112677 None:intergenic 45.0%
CTAACACAGCCCTACAAAAC+CGG + chr4_3:65112667-65112686 None:intergenic 45.0%
CAGCAATCTACTTTCTAGGC+AGG + chr4_3:65112825-65112844 None:intergenic 45.0%
ACAAATAGAACCGGCAAGCA+CGG + chr4_3:65112984-65113003 None:intergenic 45.0%
GAAAGCTGAGCAAGAGAAGT+TGG - chr4_3:65113030-65113049 Msa0656050:intron 45.0%
AGTTGTGCCAAATGGAGATG+AGG + chr4_3:65113692-65113711 None:intergenic 45.0%
GTCACTACAGTTGTGCCAAA+TGG + chr4_3:65113700-65113719 None:intergenic 45.0%
! ATAGTGGAATAGGATGGCAG+TGG + chr4_3:65113826-65113845 None:intergenic 45.0%
! ATAGCGCGCTATAGTGGAAT+AGG + chr4_3:65113836-65113855 None:intergenic 45.0%
!! AGCGGTGCTATTGACTACAT+TGG - chr4_3:65113856-65113875 Msa0656050:intron 45.0%
ATATCATCAGACTGCAGCTG+AGG + chr4_3:65114112-65114131 None:intergenic 45.0%
! TCTGTTACTTCGGCTCTGTT+TGG + chr4_3:65115162-65115181 None:intergenic 45.0%
! TACCCATGGCTCTGTTACTT+CGG + chr4_3:65115172-65115191 None:intergenic 45.0%
AGCAGAACGTGTTTGAACTG+TGG + chr4_3:65115724-65115743 None:intergenic 45.0%
GTGGAGATTGCATAACTTCG+TGG - chr4_3:65115799-65115818 Msa0656050:intron 45.0%
AACCACTCTCCTTTGACTGT+TGG - chr4_3:65116066-65116085 Msa0656050:intron 45.0%
TTCCAACAGTCAAAGGAGAG+TGG + chr4_3:65116071-65116090 None:intergenic 45.0%
CTGCAAGTTCCAACAGTCAA+AGG + chr4_3:65116078-65116097 None:intergenic 45.0%
AGGTATATAACCCCCAAAGG+TGG + chr4_3:65116121-65116140 None:intergenic 45.0%
CAGCTACGACTCCATAATTC+CGG + chr4_3:65116703-65116722 None:intergenic 45.0%
! CAATTTTTGCGGCCTTAGGT+TGG - chr4_3:65116732-65116751 Msa0656050:intron 45.0%
!! GCCTTAGGTTGGTACCTTAA+AGG - chr4_3:65116743-65116762 Msa0656050:intron 45.0%
!! GCCTTTAAGGTACCAACCTA+AGG + chr4_3:65116747-65116766 None:intergenic 45.0%
GCTTCTTTGCAGTGCCTTTA+AGG + chr4_3:65116760-65116779 None:intergenic 45.0%
GCATTGAGCAAGAACTGTGA+AGG - chr4_3:65117070-65117089 Msa0656050:intron 45.0%
!! AAATAACATTAAAAAAAAAA+TGG + chr4_3:65111108-65111127 None:intergenic 5.0%
!!! AAAATAACAATATTTTAAAA+AGG - chr4_3:65112204-65112223 Msa0656050:intron 5.0%
!! ACGTGTGAATTTCTGGTGGC+TGG - chr4_3:65111196-65111215 Msa0656050:three_prime_UTR 50.0%
ACTGACAGCAATGGCAACAC+GGG - chr4_3:65111499-65111518 Msa0656050:CDS 50.0%
AGGCTATTTAGCAGTGGCTC+TGG - chr4_3:65111545-65111564 Msa0656050:CDS 50.0%
GGCTATTTAGCAGTGGCTCT+GGG - chr4_3:65111546-65111565 Msa0656050:CDS 50.0%
!! AGTGGCTCTGGGAAAGTTCT+CGG - chr4_3:65111557-65111576 Msa0656050:CDS 50.0%
TGCATCCTCTGTGCATGTTG+AGG - chr4_3:65112263-65112282 Msa0656050:intron 50.0%
CTTCTCCTCAACATGCACAG+AGG + chr4_3:65112271-65112290 None:intergenic 50.0%
CGCAATTAGGAAAGTAGGGG+CGG + chr4_3:65112516-65112535 None:intergenic 50.0%
CGCCCCTACTTTCCTAATTG+CGG - chr4_3:65112514-65112533 Msa0656050:intron 50.0%
GGCCGCAATTAGGAAAGTAG+GGG + chr4_3:65112519-65112538 None:intergenic 50.0%
CTTTCCTAATTGCGGCCTTC+GGG - chr4_3:65112522-65112541 Msa0656050:intron 50.0%
ACACAATGAAGGCAACCCGA+AGG + chr4_3:65112540-65112559 None:intergenic 50.0%
! TCGGGTTGCCTTCATTGTGT+CGG - chr4_3:65112540-65112559 Msa0656050:intron 50.0%
!! CGGTTTTGTAGGGCTGTGTT+AGG - chr4_3:65112665-65112684 Msa0656050:intron 50.0%
! TAGGGTCACAAGTGTTGCCT+TGG - chr4_3:65112728-65112747 Msa0656050:intron 50.0%
! AGGGTCACAAGTGTTGCCTT+GGG - chr4_3:65112729-65112748 Msa0656050:intron 50.0%
!! GTGCTTGCCGGTTCTATTTG+TGG - chr4_3:65112983-65113002 Msa0656050:intron 50.0%
AAGTCATGCTTCCGCATCTG+CGG - chr4_3:65113574-65113593 Msa0656050:intron 50.0%
TTCAGCAGTGGCAGTTGTCA+TGG + chr4_3:65113766-65113785 None:intergenic 50.0%
ATGACAACTGCCACTGCTGA+AGG - chr4_3:65113765-65113784 Msa0656050:intron 50.0%
GGAATAGGATGGCAGTGGTA+GGG + chr4_3:65113821-65113840 None:intergenic 50.0%
TGGAATAGGATGGCAGTGGT+AGG + chr4_3:65113822-65113841 None:intergenic 50.0%
! CGCGCTATAGTGGAATAGGA+TGG + chr4_3:65113832-65113851 None:intergenic 50.0%
TCCACTATAGCGCGCTATAG+CGG - chr4_3:65113838-65113857 Msa0656050:intron 50.0%
AGCCGAAGTAACAGAGCCAT+GGG - chr4_3:65115167-65115186 Msa0656050:CDS 50.0%
! TCCCTTTTCTTCGCCACCTT+TGG - chr4_3:65116105-65116124 Msa0656050:intron 50.0%
CCCAAAGGTGGCGAAGAAAA+GGG + chr4_3:65116109-65116128 None:intergenic 50.0%
! CCCTTTTCTTCGCCACCTTT+GGG - chr4_3:65116106-65116125 Msa0656050:intron 50.0%
! CCTTTTCTTCGCCACCTTTG+GGG - chr4_3:65116107-65116126 Msa0656050:intron 50.0%
! CTTTTCTTCGCCACCTTTGG+GGG - chr4_3:65116108-65116127 Msa0656050:intron 50.0%
GTAACCGATGCCAAACCAAG+TGG - chr4_3:65116629-65116648 Msa0656050:CDS 50.0%
!! AGAGCCACTTGGTTTGGCAT+CGG + chr4_3:65116636-65116655 None:intergenic 50.0%
ATGTCCAGAGCCACTTGGTT+TGG + chr4_3:65116642-65116661 None:intergenic 50.0%
TCAGAATGTCCAGAGCCACT+TGG + chr4_3:65116647-65116666 None:intergenic 50.0%
CGGAATTATGGAGTCGTAGC+TGG - chr4_3:65116701-65116720 Msa0656050:CDS 50.0%
! TGCAAAGAAGCCAGAAGTGC+AGG - chr4_3:65116769-65116788 Msa0656050:intron 50.0%
! AAAGAAGCCAGAAGTGCAGG+AGG - chr4_3:65116772-65116791 Msa0656050:intron 50.0%
CTTCAATCCTCCTGCACTTC+TGG + chr4_3:65116782-65116801 None:intergenic 50.0%
! CTCTGGGAAAGTTCTCGGTG+AGG - chr4_3:65111562-65111581 Msa0656050:CDS 55.0%
TGGGAAAGTTCTCGGTGAGG+AGG - chr4_3:65111565-65111584 Msa0656050:CDS 55.0%
CGGTGAGGAGGAAAAAGCTG+CGG - chr4_3:65111577-65111596 Msa0656050:CDS 55.0%
CATGCACAGAGGATGCAGAG+TGG + chr4_3:65112260-65112279 None:intergenic 55.0%
CGGGTTGCCTTCATTGTGTC+GGG - chr4_3:65112541-65112560 Msa0656050:intron 55.0%
TTGTGTCGGGTTTGAAGGGG+TGG - chr4_3:65112554-65112573 Msa0656050:intron 55.0%
! GTTGGAGAAGCTTGCTCGCA+AGG - chr4_3:65113048-65113067 Msa0656050:intron 55.0%
AGATAAGGCAGCCGCAGATG+CGG + chr4_3:65113588-65113607 None:intergenic 55.0%
ACAACTGCCACTGCTGAAGG+TGG - chr4_3:65113768-65113787 Msa0656050:intron 55.0%
! ACTGCTGAAGGTGGCTTGCA+GGG - chr4_3:65113777-65113796 Msa0656050:intron 55.0%
ACCGCTATAGCGCGCTATAG+TGG + chr4_3:65113842-65113861 None:intergenic 55.0%
! CACAGTTAACGGATGCCCTC+AGG - chr4_3:65114086-65114105 Msa0656050:intron 55.0%
GAGCCGAAGTAACAGAGCCA+TGG - chr4_3:65115166-65115185 Msa0656050:CDS 55.0%
CCCCAAAGGTGGCGAAGAAA+AGG + chr4_3:65116110-65116129 None:intergenic 55.0%
!! GCTGGTGTTGCTTCTGGTTG+AGG + chr4_3:65116590-65116609 None:intergenic 55.0%
GATGCCAAACCAAGTGGCTC+TGG - chr4_3:65116635-65116654 Msa0656050:CDS 55.0%
GACAGCAATGGCAACACGGG+TGG - chr4_3:65111502-65111521 Msa0656050:CDS 60.0%
!! GTAGGGGCGGACTGCAATGA+AGG + chr4_3:65112503-65112522 None:intergenic 60.0%
GCAACCCGAAGGCCGCAATT+AGG + chr4_3:65112529-65112548 None:intergenic 60.0%
CAGTGAAGCTCCGTGCTTGC+CGG - chr4_3:65112971-65112990 Msa0656050:intron 60.0%
CTGCAAGCCACCTTCAGCAG+TGG + chr4_3:65113778-65113797 None:intergenic 60.0%
! CACTGCTGAAGGTGGCTTGC+AGG - chr4_3:65113776-65113795 Msa0656050:intron 60.0%
! GGCAGTGGTAGGGTTTTGCG+CGG + chr4_3:65113811-65113830 None:intergenic 60.0%
AGACTGCAGCTGAGGCCTGA+GGG + chr4_3:65114104-65114123 None:intergenic 60.0%
!! CCTGCAGCTGGTGTTGCTTC+TGG + chr4_3:65116596-65116615 None:intergenic 60.0%
CCAGAAGCAACACCAGCTGC+AGG - chr4_3:65116593-65116612 Msa0656050:intron 60.0%
GCAACACCAGCTGCAGGTTC+AGG - chr4_3:65116599-65116618 Msa0656050:intron 60.0%
ACACCAGCTGCAGGTTCAGG+TGG - chr4_3:65116602-65116621 Msa0656050:intron 60.0%
GAACCACCTGAACCTGCAGC+TGG + chr4_3:65116608-65116627 None:intergenic 60.0%
CAGACTGCAGCTGAGGCCTG+AGG + chr4_3:65114105-65114124 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 65110857 65117374 65110857 ID=Msa0656050;Name=Msa0656050
chr4_3 mRNA 65110857 65117374 65110857 ID=Msa0656050-mRNA-1;Parent=Msa0656050;Name=Msa0656050-mRNA-1;_AED=0.04;_eAED=0.04;_QI=147|1|1|1|0.66|0.5|4|575|120
chr4_3 exon 65110857 65111647 65110857 ID=Msa0656050-mRNA-1:exon:18474;Parent=Msa0656050-mRNA-1
chr4_3 exon 65115162 65115200 65115162 ID=Msa0656050-mRNA-1:exon:18473;Parent=Msa0656050-mRNA-1
chr4_3 exon 65116615 65116750 65116615 ID=Msa0656050-mRNA-1:exon:18472;Parent=Msa0656050-mRNA-1
chr4_3 exon 65117256 65117374 65117256 ID=Msa0656050-mRNA-1:exon:18471;Parent=Msa0656050-mRNA-1
chr4_3 five_prime_UTR 65117256 65117374 65117256 ID=Msa0656050-mRNA-1:five_prime_utr;Parent=Msa0656050-mRNA-1
chr4_3 five_prime_UTR 65116723 65116750 65116723 ID=Msa0656050-mRNA-1:five_prime_utr;Parent=Msa0656050-mRNA-1
chr4_3 CDS 65116615 65116722 65116615 ID=Msa0656050-mRNA-1:cds;Parent=Msa0656050-mRNA-1
chr4_3 CDS 65115162 65115200 65115162 ID=Msa0656050-mRNA-1:cds;Parent=Msa0656050-mRNA-1
chr4_3 CDS 65111432 65111647 65111432 ID=Msa0656050-mRNA-1:cds;Parent=Msa0656050-mRNA-1
chr4_3 three_prime_UTR 65110857 65111431 65110857 ID=Msa0656050-mRNA-1:three_prime_utr;Parent=Msa0656050-mRNA-1
Gene Sequence

>Msa0656050

ATGGCAACACGGGTGGCAGCAAGATTTGCATCTAGAAGGCTATTTAGCAGTGGCTCTGGGAAAGTTCTCGGTGAGGAGGAAAAAGCTGCGGAAAATGCTTACTTCAAGAAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGGGTCCTCAACCAGAAGCAACACCAGCTGCAGGTTCAGGTGGTTCAGTAACCGATGCCAAACCAAGTGGCTCTGGACATTCTGATACATCAGGTCCCAAAGTTTCAAGTGACAAATACCGGAATTATGGAGTCGTAGCTGGCACTATAACAATTTTTGCGGCCTTAGGTTGGTACCTTAAAGGCACTGCAAAGAAGCCAGAAGTGCAGGAGGATTGA
Protein sequence

>Msa0656050

MATRVAARFASRRLFSSGSGKVLGEEEKAAENAYFKKAEQEKLEKLARKGPQPEATPAAGSGGSVTDAKPSGSGHSDTSGPKVSSDKYRNYGVVAGTITIFAALGWYLKGTAKKPEVQED*