Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740610 | XP_003617144.2 | 97.911 | 383 | 7 | 1 | 1 | 383 | 1 | 382 | 0.0 | 758 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740610 | sp|Q9LTR2|TGD2_ARATH | 67.102 | 383 | 124 | 2 | 1 | 383 | 1 | 381 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740610 | G7K7Q7 | 97.911 | 383 | 7 | 1 | 1 | 383 | 1 | 382 | 0.0 | 758 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0114720 | Msa0740610 | 0.823590 | 1.275913e-53 | -8.615850e-47 |
| Msa0656050 | Msa0740610 | 0.808197 | 3.485544e-50 | -8.615850e-47 |
| Msa0740610 | Msa0774250 | 0.808251 | 3.394143e-50 | -8.615850e-47 |
| Msa0545540 | Msa0740610 | 0.809233 | 2.094217e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740610 | MtrunA17_Chr5g0441001 | 97.911 | 383 | 7 | 1 | 1 | 383 | 1 | 382 | 0.0 | 758 |
| Msa0740610 | MtrunA17_Chr3g0093291 | 69.948 | 386 | 102 | 3 | 1 | 383 | 1 | 375 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740610 | AT3G20320.1 | 67.102 | 383 | 124 | 2 | 1 | 383 | 1 | 381 | 0.0 | 511 |
| Msa0740610 | AT3G20320.3 | 64.085 | 284 | 100 | 2 | 1 | 284 | 1 | 282 | 1.41e-124 | 361 |
| Msa0740610 | AT3G20320.2 | 64.085 | 284 | 100 | 2 | 1 | 284 | 1 | 282 | 1.41e-124 | 361 |
Find 134 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAATTTCTTATGTTTAAT+TGG | 0.102443 | 5_1:-59625022 | Msa0740610:three_prime_UTR |
| TTCTGAATTTGGAATTTATT+TGG | 0.110769 | 5_1:+59627835 | None:intergenic |
| TGCCGTGTACTTTCTGAATT+TGG | 0.116083 | 5_1:+59627824 | None:intergenic |
| TTGGTTTCTGCTCAAGTTAT+TGG | 0.183529 | 5_1:-59625116 | Msa0740610:three_prime_UTR |
| CTGGTTCCATTAAGTGATTT+TGG | 0.187008 | 5_1:-59627954 | Msa0740610:CDS |
| TGGTTTCTGCTCAAGTTATT+GGG | 0.199640 | 5_1:-59625115 | Msa0740610:three_prime_UTR |
| TTTGTGAATCCTGACCTTTC+TGG | 0.213461 | 5_1:+59629483 | None:intergenic |
| TTGCTTGAGAACTAGTATTT+TGG | 0.256519 | 5_1:-59624715 | Msa0740610:three_prime_UTR |
| TCGACATTCCTAGACGTATT+TGG | 0.262993 | 5_1:-59627986 | Msa0740610:CDS |
| AAAATGAAGTCACAGTTTAA+AGG | 0.271407 | 5_1:-59625049 | Msa0740610:three_prime_UTR |
| CCGAACCCAAAATCACTTAA+TGG | 0.272777 | 5_1:+59627948 | None:intergenic |
| AGAATTTCTTATGTTTAATT+GGG | 0.276220 | 5_1:-59625021 | Msa0740610:three_prime_UTR |
| TTAGTTGCTCTCTCTTCTTT+TGG | 0.289035 | 5_1:-59624793 | Msa0740610:three_prime_UTR |
| TAAGTGTGTGTATGGACTTC+TGG | 0.303339 | 5_1:+59625831 | None:intergenic |
| CCCTAGCTTCTGATGATTTG+AGG | 0.341669 | 5_1:-59626431 | Msa0740610:intron |
| ACCTCAACGAATGAGTTCTT+TGG | 0.362103 | 5_1:+59627233 | None:intergenic |
| CCAACTGAAGGTGTCGGAAT+TGG | 0.367176 | 5_1:+59627158 | None:intergenic |
| CTCTTCTCGTCTCTTCGATT+CGG | 0.370282 | 5_1:-59629340 | Msa0740610:five_prime_UTR |
| TCTGATTCTCACAGGTGTTC+CGG | 0.373808 | 5_1:+59627767 | None:intergenic |
| GATACTATTTGTGCTCAGTA+TGG | 0.382900 | 5_1:-59627874 | Msa0740610:CDS |
| TCTAGATGTTCAACCTTTGT+TGG | 0.383759 | 5_1:-59626511 | Msa0740610:CDS |
| GGTAAATATAAGTGTGTGTA+TGG | 0.394496 | 5_1:+59625823 | None:intergenic |
| GCAGAATATTACCTCTGATA+TGG | 0.395381 | 5_1:-59625705 | Msa0740610:intron |
| CAGAAGCTAGGGTAAGGCTT+CGG | 0.397566 | 5_1:+59626442 | None:intergenic |
| CCTGACCTTTCTGGTGAAAA+CGG | 0.401802 | 5_1:+59629492 | None:intergenic |
| GGGTCACCAAGGAGTAAGTT+TGG | 0.410151 | 5_1:-59627075 | Msa0740610:CDS |
| CCTGTTGTATGCTACTTCAC+TGG | 0.413187 | 5_1:+59625598 | None:intergenic |
| AGGTTGGTTTGAAGATGGTT+GGG | 0.416348 | 5_1:-59628214 | Msa0740610:exon |
| CGCCGCTTTCAATTCGAAAT+CGG | 0.416898 | 5_1:-59628106 | Msa0740610:CDS |
| GGACGAGATGTAGAGGGAAT+TGG | 0.419956 | 5_1:-59627023 | Msa0740610:CDS |
| TACGTACCTTACAGTGTTGA+TGG | 0.425707 | 5_1:+59629270 | None:intergenic |
| CAATTAATACATTGCTAAGA+TGG | 0.426922 | 5_1:+59624973 | None:intergenic |
| TCAAACCTCAATGTTCTTCA+AGG | 0.432770 | 5_1:+59625802 | None:intergenic |
| AGGAGTAAGTTTGGATGAAA+TGG | 0.434275 | 5_1:-59627066 | Msa0740610:CDS |
| TGGTTGGGATAGATATTAAG+AGG | 0.436953 | 5_1:+59629421 | None:intergenic |
| GAAATAGTGTCTGGGAAGGC+GGG | 0.437086 | 5_1:-59627923 | Msa0740610:CDS |
| TTCGTTGAGGTTAACCAGTC+AGG | 0.437205 | 5_1:-59627221 | Msa0740610:CDS |
| GGTTCGGTCGAAATAGTGTC+TGG | 0.437469 | 5_1:-59627932 | Msa0740610:CDS |
| AGAAGCTAGGGTAAGGCTTC+GGG | 0.447061 | 5_1:+59626443 | None:intergenic |
| GAGGTTGGTTTGAAGATGGT+TGG | 0.449335 | 5_1:-59628215 | Msa0740610:exon |
| AGTGTCTGGGAAGGCGGGGT+TGG | 0.452641 | 5_1:-59627918 | Msa0740610:CDS |
| ATCTAAGAAGCATGAATCAT+AGG | 0.458575 | 5_1:+59629306 | None:intergenic |
| AACTCTCAACTTCCTTCAAT+AGG | 0.459217 | 5_1:+59626469 | None:intergenic |
| CTTAAATTCAAATTACCAGC+TGG | 0.461606 | 5_1:-59624689 | Msa0740610:three_prime_UTR |
| GATATTAAGAGGAAAGAAAG+TGG | 0.462883 | 5_1:+59629432 | None:intergenic |
| GTCACATTCGAACATTCATT+CGG | 0.463561 | 5_1:+59629390 | None:intergenic |
| AATGATGAGAGATGGATTGC+AGG | 0.470223 | 5_1:+59628188 | None:intergenic |
| AGAAGATATAGCTCTAATCT+TGG | 0.470549 | 5_1:+59628073 | None:intergenic |
| CATTAAACTACACTGTTGCA+TGG | 0.474864 | 5_1:+59624928 | None:intergenic |
| AGGTCAGGATTCACAAAGAT+CGG | 0.476045 | 5_1:-59629477 | Msa0740610:five_prime_UTR |
| CTCTACATCTCGTCCGAGAC+GGG | 0.476394 | 5_1:+59627031 | None:intergenic |
| CCGTGATAGCGGCCTATTGA+AGG | 0.476864 | 5_1:-59626481 | Msa0740610:CDS |
| TTTCATCCAAACTTACTCCT+TGG | 0.476894 | 5_1:+59627069 | None:intergenic |
| CTCAACAGTTCTATCTATCA+AGG | 0.484924 | 5_1:+59628249 | None:intergenic |
| TTAAGCTGTGAAAACTGGAT+TGG | 0.488683 | 5_1:-59624742 | Msa0740610:three_prime_UTR |
| CAAGTTATTGGGGCCATCTG+TGG | 0.489351 | 5_1:-59625104 | Msa0740610:three_prime_UTR |
| CAAGGAGGTTGGTTTGAAGA+TGG | 0.491554 | 5_1:-59628219 | Msa0740610:exon |
| CCAGTGAAGTAGCATACAAC+AGG | 0.491886 | 5_1:-59625598 | Msa0740610:intron |
| TCTCTTCCATCAACACTGTA+AGG | 0.496355 | 5_1:-59629276 | Msa0740610:intron |
| TATCGTCAACAGCTACTCAT+TGG | 0.501193 | 5_1:-59627000 | Msa0740610:CDS |
| TTCGAGTTTGCTCAAGCTTG+TGG | 0.510719 | 5_1:-59627798 | Msa0740610:CDS |
| AGGCAACTCATTAAAGTTTG+CGG | 0.512937 | 5_1:-59628129 | Msa0740610:CDS |
| GATCAGCTCAGCGTTCTCAT+TGG | 0.514219 | 5_1:+59625853 | None:intergenic |
| TGTTCAACCTTTGTTGGCCG+AGG | 0.515090 | 5_1:-59626505 | Msa0740610:CDS |
| CGAAATAGTGTCTGGGAAGG+CGG | 0.516663 | 5_1:-59627924 | Msa0740610:CDS |
| CCTCTACATCTCGTCCGAGA+CGG | 0.518019 | 5_1:+59627030 | None:intergenic |
| ACCTCAAATCATCAGAAGCT+AGG | 0.518321 | 5_1:+59626430 | None:intergenic |
| AGTAAGTTTGGATGAAATGG+TGG | 0.526004 | 5_1:-59627063 | Msa0740610:CDS |
| GAATTTCTTATGTTTAATTG+GGG | 0.526181 | 5_1:-59625020 | Msa0740610:three_prime_UTR |
| GGTTTCTGCTCAAGTTATTG+GGG | 0.526595 | 5_1:-59625114 | Msa0740610:three_prime_UTR |
| AATCAACTTTCTCAACTCAA+TGG | 0.527530 | 5_1:+59625156 | None:intergenic |
| TATTTGTGCTCAGTATGGCT+TGG | 0.529985 | 5_1:-59627869 | Msa0740610:CDS |
| TTATCGATTCGGAAACCAGC+TGG | 0.532018 | 5_1:+59624674 | None:intergenic |
| CCTCAAATCATCAGAAGCTA+GGG | 0.532646 | 5_1:+59626431 | None:intergenic |
| TCCTTCCTTGAAAAGTATTG+AGG | 0.533072 | 5_1:-59627712 | Msa0740610:CDS |
| GACGAAGAATGTGCTAAAGA+AGG | 0.539788 | 5_1:-59627128 | Msa0740610:CDS |
| GAATGTGACTACATAGTACT+TGG | 0.541180 | 5_1:-59629376 | Msa0740610:five_prime_UTR |
| GGTCAGGATTCACAAAGATC+GGG | 0.541291 | 5_1:-59629476 | Msa0740610:five_prime_UTR |
| GCAAACTTTAATGAGTTGCC+TGG | 0.541843 | 5_1:+59628131 | None:intergenic |
| TTAGCACATTCTTCGTCAAG+AGG | 0.542683 | 5_1:+59627134 | None:intergenic |
| AGACATGAAGAAACAGAAGT+TGG | 0.546046 | 5_1:+59628164 | None:intergenic |
| AATCATCAGAAGCTAGGGTA+AGG | 0.550341 | 5_1:+59626436 | None:intergenic |
| GTTTGCTTCCAAATACGTCT+AGG | 0.553355 | 5_1:+59627978 | None:intergenic |
| TACTTATCAAGAATCTCAGC+AGG | 0.558675 | 5_1:-59625640 | Msa0740610:CDS |
| TTGGCCGAGGTCCGTGATAG+CGG | 0.559975 | 5_1:-59626492 | Msa0740610:CDS |
| TTTCCATCAAAAGACCTGAC+TGG | 0.561040 | 5_1:+59627207 | None:intergenic |
| ATTAAACTACACTGTTGCAT+GGG | 0.566235 | 5_1:+59624929 | None:intergenic |
| CAAGCTTGTGGTATAAGCAC+CGG | 0.567613 | 5_1:-59627786 | Msa0740610:CDS |
| AATATTACCTCTGATATGGT+AGG | 0.567654 | 5_1:-59625701 | Msa0740610:CDS |
| TCATGTCTGATTTCTCTACC+AGG | 0.568622 | 5_1:-59628149 | Msa0740610:CDS |
| AAGTTGGTAATGATGAGAGA+TGG | 0.569327 | 5_1:+59628180 | None:intergenic |
| GCTGTGAAAACTGGATTGGT+TGG | 0.570353 | 5_1:-59624738 | Msa0740610:three_prime_UTR |
| CCGTCTCGGACGAGATGTAG+AGG | 0.578909 | 5_1:-59627030 | Msa0740610:CDS |
| AGAATCAGAGGGGTCACTGT+TGG | 0.578987 | 5_1:-59627753 | Msa0740610:CDS |
| AGCAAGACCGCTTCTTACAC+AGG | 0.579688 | 5_1:-59626949 | Msa0740610:intron |
| ATTTACCTTGAAGAACATTG+AGG | 0.581288 | 5_1:-59625807 | Msa0740610:intron |
| ACCAAAGAACTCATTCGTTG+AGG | 0.582607 | 5_1:-59627234 | Msa0740610:CDS |
| ACGTATTTGGAAGCAAACAC+TGG | 0.584425 | 5_1:-59627973 | Msa0740610:CDS |
| GTGTAGTTTAATGTTACAGA+GGG | 0.585646 | 5_1:-59624918 | Msa0740610:three_prime_UTR |
| TTCCGATTTCGAATTGAAAG+CGG | 0.589796 | 5_1:+59628104 | None:intergenic |
| ATGATGAGAGATGGATTGCA+GGG | 0.591195 | 5_1:+59628189 | None:intergenic |
| AAGTATTGAGGCAGTTGTCG+AGG | 0.591258 | 5_1:-59627700 | Msa0740610:intron |
| GTGCGATAGAGAAAAGATCA+AGG | 0.594027 | 5_1:-59627096 | Msa0740610:CDS |
| ATGTCGAATACAACTGCAAG+TGG | 0.594100 | 5_1:+59628002 | None:intergenic |
| CCTTCAATAGGCCGCTATCA+CGG | 0.604578 | 5_1:+59626481 | None:intergenic |
| CCAATTCCGACACCTTCAGT+TGG | 0.606380 | 5_1:-59627158 | Msa0740610:CDS |
| GTGACCCCTCTGATTCTCAC+AGG | 0.607320 | 5_1:+59627759 | None:intergenic |
| CAGTGTTGATGGAAGAGAGA+GGG | 0.607639 | 5_1:+59629281 | None:intergenic |
| GAAAAGATCAAGGGTCACCA+AGG | 0.610061 | 5_1:-59627086 | Msa0740610:CDS |
| TCACGGACCTCGGCCAACAA+AGG | 0.611021 | 5_1:+59626498 | None:intergenic |
| AAATAGTGTCTGGGAAGGCG+GGG | 0.611678 | 5_1:-59627922 | Msa0740610:CDS |
| TGATTTCTAGTTCAATTGTG+CGG | 0.619362 | 5_1:-59628296 | Msa0740610:intron |
| GGAACACCTGTGAGAATCAG+AGG | 0.623624 | 5_1:-59627765 | Msa0740610:CDS |
| TAGGCCGCTATCACGGACCT+CGG | 0.624041 | 5_1:+59626488 | None:intergenic |
| GTAAGTTTGGATGAAATGGT+GGG | 0.624337 | 5_1:-59627062 | Msa0740610:CDS |
| TCGTCAAGAGGACCAACTGA+AGG | 0.630553 | 5_1:+59627146 | None:intergenic |
| AGGTTGAACATCTAGAGCCA+TGG | 0.633693 | 5_1:+59626518 | None:intergenic |
| GAACACCTGTGAGAATCAGA+GGG | 0.634134 | 5_1:-59627764 | Msa0740610:CDS |
| AGAGGACCAACTGAAGGTGT+CGG | 0.635149 | 5_1:+59627152 | None:intergenic |
| CATCACACCTGTGTAAGAAG+CGG | 0.635877 | 5_1:+59626942 | None:intergenic |
| TTCCAAATTCAGAAAGTACA+CGG | 0.638247 | 5_1:-59627826 | Msa0740610:CDS |
| TGCGATAGAGAAAAGATCAA+GGG | 0.640269 | 5_1:-59627095 | Msa0740610:CDS |
| GGTCGAAATAGTGTCTGGGA+AGG | 0.641754 | 5_1:-59627927 | Msa0740610:CDS |
| GTTCGGTCGAAATAGTGTCT+GGG | 0.643675 | 5_1:-59627931 | Msa0740610:CDS |
| CAAGTGACATGATCCACAGA+TGG | 0.643745 | 5_1:+59625091 | None:intergenic |
| CGTCTCGGACGAGATGTAGA+GGG | 0.646951 | 5_1:-59627029 | Msa0740610:CDS |
| AGTGTAGTTTAATGTTACAG+AGG | 0.647387 | 5_1:-59624919 | Msa0740610:three_prime_UTR |
| AGTAAAACCTACCATATCAG+AGG | 0.647833 | 5_1:+59625694 | None:intergenic |
| GTGGGAATATACACCCGTCT+CGG | 0.650124 | 5_1:-59627044 | Msa0740610:CDS |
| AGTCATCTAGTTCAGAAACA+AGG | 0.655721 | 5_1:-59628028 | Msa0740610:CDS |
| GATGCCTCAGATGAAAGCCA+TGG | 0.676272 | 5_1:-59626535 | Msa0740610:intron |
| GGTGTCGGAATTGGATCACG+AGG | 0.685334 | 5_1:+59627167 | None:intergenic |
| ACAGTGTTGATGGAAGAGAG+AGG | 0.720353 | 5_1:+59629280 | None:intergenic |
| AACACCTGTGAGAATCAGAG+GGG | 0.773848 | 5_1:-59627763 | Msa0740610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTGATTAATGTTATTT+TGG | - | chr5_1:59625323-59625342 | Msa0740610:intron | 10.0% |
| !! | AATTCATAAAAATTGAAAAA+GGG | + | chr5_1:59625806-59625825 | None:intergenic | 10.0% |
| !! | TGAATTATTAAAAATGATAA+TGG | - | chr5_1:59627488-59627507 | Msa0740610:intron | 10.0% |
| !!! | TAGTAATTTAAATTGTTTTA+AGG | - | chr5_1:59628625-59628644 | Msa0740610:intron | 10.0% |
| !!! | AGTAATTTAAATTGTTTTAA+GGG | - | chr5_1:59628626-59628645 | Msa0740610:intron | 10.0% |
| !! | TCCAAGAAAAAATTAAAATT+GGG | + | chr5_1:59625078-59625097 | None:intergenic | 15.0% |
| !! | ATCCAAGAAAAAATTAAAAT+TGG | + | chr5_1:59625079-59625098 | None:intergenic | 15.0% |
| !! | AAAGTAATTTAACACAAAAA+AGG | + | chr5_1:59625713-59625732 | None:intergenic | 15.0% |
| !! | ATTCATAAAAATTGAAAAAG+GGG | + | chr5_1:59625805-59625824 | None:intergenic | 15.0% |
| !! | CAATTCATAAAAATTGAAAA+AGG | + | chr5_1:59625807-59625826 | None:intergenic | 15.0% |
| !! | AAAATCATATAATCTTAATC+GGG | + | chr5_1:59625833-59625852 | None:intergenic | 15.0% |
| !! | CAAAATCATATAATCTTAAT+CGG | + | chr5_1:59625834-59625853 | None:intergenic | 15.0% |
| !!! | ACTTTCATTTTTTTAGTTTT+TGG | - | chr5_1:59626837-59626856 | Msa0740610:intron | 15.0% |
| !! | TAGAATTTCTTATGTTTAAT+TGG | - | chr5_1:59629126-59629145 | Msa0740610:intron | 15.0% |
| !! | AGAATTTCTTATGTTTAATT+GGG | - | chr5_1:59629127-59629146 | Msa0740610:intron | 15.0% |
| !!! | CTATTTTTTATTTATCGATT+CGG | + | chr5_1:59629488-59629507 | None:intergenic | 15.0% |
| !!! | AATTTCATCTTTTCTCTAAT+TGG | - | chr5_1:59624933-59624952 | Msa0740610:three_prime_UTR | 20.0% |
| !! | TGAAAAGTTTAGATAGAAAA+GGG | + | chr5_1:59624964-59624983 | None:intergenic | 20.0% |
| !! | ATGAAAAGTTTAGATAGAAA+AGG | + | chr5_1:59624965-59624984 | None:intergenic | 20.0% |
| !! | AAAATGATGTATAGACATAA+AGG | + | chr5_1:59625030-59625049 | None:intergenic | 20.0% |
| !!! | ACCCAATTTTAATTTTTTCT+TGG | - | chr5_1:59625074-59625093 | Msa0740610:three_prime_UTR | 20.0% |
| !!! | TTTGAGACTAGAATAATAAT+GGG | + | chr5_1:59625129-59625148 | None:intergenic | 20.0% |
| !!! | ATTTGAGACTAGAATAATAA+TGG | + | chr5_1:59625130-59625149 | None:intergenic | 20.0% |
| !! | TTAATGTTCACATTATGAAA+AGG | - | chr5_1:59625178-59625197 | Msa0740610:intron | 20.0% |
| !!! | ATGAAAAGGTGAAATTTTTA+AGG | - | chr5_1:59625192-59625211 | Msa0740610:intron | 20.0% |
| !!! | TGAAAAGGTGAAATTTTTAA+GGG | - | chr5_1:59625193-59625212 | Msa0740610:intron | 20.0% |
| !! | TTAATCATAAGCATGTTATT+AGG | - | chr5_1:59625235-59625254 | Msa0740610:intron | 20.0% |
| !!! | ATTAGGATTTGGTTTATTAT+TGG | - | chr5_1:59625252-59625271 | Msa0740610:intron | 20.0% |
| !!! | ACTTGTGTTATTAGAATATT+TGG | - | chr5_1:59625294-59625313 | Msa0740610:intron | 20.0% |
| !!! | TTATTTTGGTTTATTATGTG+TGG | - | chr5_1:59625337-59625356 | Msa0740610:intron | 20.0% |
| !!! | CTTCTTAATAGTTTTTCTTA+TGG | + | chr5_1:59625568-59625587 | None:intergenic | 20.0% |
| !!! | ACTTTTGTTATCAGATTATT+TGG | - | chr5_1:59625728-59625747 | Msa0740610:intron | 20.0% |
| !!! | ATGATTGATTAGTGTTATTT+TGG | - | chr5_1:59625757-59625776 | Msa0740610:intron | 20.0% |
| !!! | TAGTGTTATTTTGGTTTATT+TGG | - | chr5_1:59625766-59625785 | Msa0740610:intron | 20.0% |
| !!! | TTCTGAATTTGGAATTTATT+TGG | + | chr5_1:59626316-59626335 | None:intergenic | 20.0% |
| !! | GACATAACAAAATTATATGT+TGG | + | chr5_1:59626667-59626686 | None:intergenic | 20.0% |
| !! | TCATAATAAGATTTGATTCA+CGG | - | chr5_1:59626749-59626768 | Msa0740610:intron | 20.0% |
| !!! | ACATGAAATTCTTATTTCTA+AGG | + | chr5_1:59627451-59627470 | None:intergenic | 20.0% |
| !! | CATATTAGGATAAACATAAT+AGG | + | chr5_1:59628116-59628135 | None:intergenic | 20.0% |
| !!! | AATACACAGAATTTTTGAAT+TGG | + | chr5_1:59628157-59628176 | None:intergenic | 20.0% |
| !!! | ACTTTTTCTCATGTTTTTTT+TGG | - | chr5_1:59628410-59628429 | Msa0740610:intron | 20.0% |
| !!! | AAGTAGTTTCAAATTCTTTT+TGG | + | chr5_1:59628493-59628512 | None:intergenic | 20.0% |
| !!! | TTTAGCTTATTTCCATAAAT+TGG | - | chr5_1:59628755-59628774 | Msa0740610:intron | 20.0% |
| !! | AATAAGAAAACACCAATTTA+TGG | + | chr5_1:59628770-59628789 | None:intergenic | 20.0% |
| !! | GAATTTCTTATGTTTAATTG+GGG | - | chr5_1:59629128-59629147 | Msa0740610:intron | 20.0% |
| ! | TTGAGACTAGAATAATAATG+GGG | + | chr5_1:59625128-59625147 | None:intergenic | 25.0% |
| ! | ATAAGCATGTTATTAGGATT+TGG | - | chr5_1:59625241-59625260 | Msa0740610:intron | 25.0% |
| !! | TGAATGTTGATTATGTAGTA+AGG | - | chr5_1:59625484-59625503 | Msa0740610:intron | 25.0% |
| ! | AAACTATTAAGAAGATGTAG+AGG | - | chr5_1:59625574-59625593 | Msa0740610:intron | 25.0% |
| ! | TATTCAGTTGGATTGAAATA+CGG | - | chr5_1:59625598-59625617 | Msa0740610:intron | 25.0% |
| ! | AATTGAAAAAGGGGATAAAA+AGG | + | chr5_1:59625796-59625815 | None:intergenic | 25.0% |
| ! | TAGAGTCATCAATGAAATTA+TGG | + | chr5_1:59626486-59626505 | None:intergenic | 25.0% |
| ! | AATAAATTGGGATTCACAAT+GGG | + | chr5_1:59626616-59626635 | None:intergenic | 25.0% |
| ! | ACTACATCAAAACGAAAATA+CGG | + | chr5_1:59627593-59627612 | None:intergenic | 25.0% |
| ! | CAATCATAATTTATACCAAG+AGG | + | chr5_1:59627862-59627881 | None:intergenic | 25.0% |
| ! | CTTGGTATAAATTATGATTG+AGG | - | chr5_1:59627862-59627881 | Msa0740610:CDS | 25.0% |
| ! | GATTTAATGGGAAAAATATG+AGG | - | chr5_1:59627897-59627916 | Msa0740610:CDS | 25.0% |
| ! | TGTGCTTATCAATATATGAA+TGG | + | chr5_1:59627977-59627996 | None:intergenic | 25.0% |
| !! | CATGTGAAATTTCAGTTTTA+GGG | + | chr5_1:59628049-59628068 | None:intergenic | 25.0% |
| !! | TCATGTGAAATTTCAGTTTT+AGG | + | chr5_1:59628050-59628069 | None:intergenic | 25.0% |
| ! | AAATAAGCTAAACCAACTTA+TGG | + | chr5_1:59628747-59628766 | None:intergenic | 25.0% |
| ! | AAACTATCATGGAAAACATA+TGG | + | chr5_1:59628794-59628813 | None:intergenic | 25.0% |
| ! | TCCATGATAGTTTATGAAAA+CGG | - | chr5_1:59628801-59628820 | Msa0740610:intron | 25.0% |
| ! | AATAGCTTATACATAAGAAC+AGG | - | chr5_1:59628851-59628870 | Msa0740610:intron | 25.0% |
| !! | TTTTTACGTGACAACTTTTT+TGG | - | chr5_1:59629013-59629032 | Msa0740610:intron | 25.0% |
| !!! | ACTTCATTTTTCTCAAAATC+TGG | + | chr5_1:59629089-59629108 | None:intergenic | 25.0% |
| ! | AAAATGAAGTCACAGTTTAA+AGG | - | chr5_1:59629099-59629118 | Msa0740610:intron | 25.0% |
| ! | CAATTAATACATTGCTAAGA+TGG | + | chr5_1:59629178-59629197 | None:intergenic | 25.0% |
| !!! | GGCTTTCAATACTTTTTTTA+AGG | - | chr5_1:59629251-59629270 | Msa0740610:intron | 25.0% |
| !!! | TTCAATACTTTTTTTAAGGC+AGG | - | chr5_1:59629255-59629274 | Msa0740610:intron | 25.0% |
| GATATTAAGAGGAAAGAAAG+TGG | + | chr5_1:59624719-59624738 | None:intergenic | 30.0% | |
| ! | ACATTCATTCGGTTTTTGTT+TGG | + | chr5_1:59624750-59624769 | None:intergenic | 30.0% |
| ! | ATCTAAGAAGCATGAATCAT+AGG | + | chr5_1:59624845-59624864 | None:intergenic | 30.0% |
| TTGAAGTGTAGAAAAACAGT+GGG | + | chr5_1:59624915-59624934 | None:intergenic | 30.0% | |
| ATTGAAGTGTAGAAAAACAG+TGG | + | chr5_1:59624916-59624935 | None:intergenic | 30.0% | |
| ! | ACATAAAGGTATGAGATTGA+AGG | + | chr5_1:59625016-59625035 | None:intergenic | 30.0% |
| GACATTAGAGAGTGAAATTT+GGG | - | chr5_1:59625391-59625410 | Msa0740610:intron | 30.0% | |
| AGAACCTATAGTAGAAAAGA+TGG | - | chr5_1:59625415-59625434 | Msa0740610:intron | 30.0% | |
| !! | TAGAAAAGATGGTGGAAAAT+AGG | - | chr5_1:59625426-59625445 | Msa0740610:intron | 30.0% |
| CGGTTTATGATAGAACATTA+TGG | - | chr5_1:59625618-59625637 | Msa0740610:exon | 30.0% | |
| AACAAACAAACAACAACAAC+CGG | + | chr5_1:59625669-59625688 | None:intergenic | 30.0% | |
| !! | TGATTTCTAGTTCAATTGTG+CGG | - | chr5_1:59625852-59625871 | Msa0740610:CDS | 30.0% |
| !! | AGAAGATATAGCTCTAATCT+TGG | + | chr5_1:59626078-59626097 | None:intergenic | 30.0% |
| ! | TGGTTCCATTAAGTGATTTT+GGG | - | chr5_1:59626195-59626214 | Msa0740610:intron | 30.0% |
| ! | TTCCAAATTCAGAAAGTACA+CGG | - | chr5_1:59626322-59626341 | Msa0740610:intron | 30.0% |
| ! | TCATTGATGACTCTAATACA+TGG | - | chr5_1:59626491-59626510 | Msa0740610:CDS | 30.0% |
| ATCTCTAGTGTGTATCTATT+TGG | - | chr5_1:59626582-59626601 | Msa0740610:intron | 30.0% | |
| CAATAAATTGGGATTCACAA+TGG | + | chr5_1:59626617-59626636 | None:intergenic | 30.0% | |
| GGAATTCATCGCAATAAATT+GGG | + | chr5_1:59626628-59626647 | None:intergenic | 30.0% | |
| GTTGGTATATCATAGTGAAT+CGG | + | chr5_1:59626649-59626668 | None:intergenic | 30.0% | |
| CGCAAGATATTATTAACACT+TGG | + | chr5_1:59626809-59626828 | None:intergenic | 30.0% | |
| GTGTTAATAATATCTTGCGT+TGG | - | chr5_1:59626810-59626829 | Msa0740610:intron | 30.0% | |
| ATTTCTATGCCAATAGAAAG+TGG | - | chr5_1:59627292-59627311 | Msa0740610:intron | 30.0% | |
| GAGAATGCATCATATAGTAA+AGG | + | chr5_1:59627566-59627585 | None:intergenic | 30.0% | |
| CTACATCAAAACGAAAATAC+GGG | + | chr5_1:59627592-59627611 | None:intergenic | 30.0% | |
| AGACTTGTCAGAGATTTAAT+GGG | - | chr5_1:59627885-59627904 | Msa0740610:CDS | 30.0% | |
| ! | ATGGCAACTGATTTAAACTT+AGG | + | chr5_1:59627958-59627977 | None:intergenic | 30.0% |
| ! | TAATGATTTTTCTCATGCAG+TGG | + | chr5_1:59628092-59628111 | None:intergenic | 30.0% |
| ATTCTCACAAGTTGCATATT+AGG | + | chr5_1:59628130-59628149 | None:intergenic | 30.0% | |
| TCAATTAGTTACCATGTTTC+AGG | + | chr5_1:59628230-59628249 | None:intergenic | 30.0% | |
| GGTAAATATAAGTGTGTGTA+TGG | + | chr5_1:59628328-59628347 | None:intergenic | 30.0% | |
| ATTTACCTTGAAGAACATTG+AGG | - | chr5_1:59628341-59628360 | Msa0740610:intron | 30.0% | |
| AATATTACCTCTGATATGGT+AGG | - | chr5_1:59628447-59628466 | Msa0740610:intron | 30.0% | |
| ! | TATTTTCTCCTTCAATGTTG+TGG | + | chr5_1:59628607-59628626 | None:intergenic | 30.0% |
| GCAGATAAGCACAAATAAAT+AGG | + | chr5_1:59628666-59628685 | None:intergenic | 30.0% | |
| ATTTATTTGTGCTTATCTGC+TGG | - | chr5_1:59628666-59628685 | Msa0740610:intron | 30.0% | |
| ! | AAGCACTTGAGAAATTGTTT+TGG | - | chr5_1:59628692-59628711 | Msa0740610:intron | 30.0% |
| ! | ACCGTTTTCATAAACTATCA+TGG | + | chr5_1:59628805-59628824 | None:intergenic | 30.0% |
| ! | CTGATAAAAGTTGTCTTTTG+TGG | - | chr5_1:59628949-59628968 | Msa0740610:intron | 30.0% |
| AATCAACTTTCTCAACTCAA+TGG | + | chr5_1:59628995-59629014 | None:intergenic | 30.0% | |
| ATTAAACTACACTGTTGCAT+GGG | + | chr5_1:59629222-59629241 | None:intergenic | 30.0% | |
| AGTGTAGTTTAATGTTACAG+AGG | - | chr5_1:59629229-59629248 | Msa0740610:intron | 30.0% | |
| GTGTAGTTTAATGTTACAGA+GGG | - | chr5_1:59629230-59629249 | Msa0740610:intron | 30.0% | |
| !! | CTCTTCTTTTGGTTAATTCA+AGG | - | chr5_1:59629366-59629385 | Msa0740610:five_prime_UTR | 30.0% |
| !! | TCTTTTGGTTAATTCAAGGT+TGG | - | chr5_1:59629370-59629389 | Msa0740610:five_prime_UTR | 30.0% |
| ! | TTGCTTGAGAACTAGTATTT+TGG | - | chr5_1:59629433-59629452 | Msa0740610:five_prime_UTR | 30.0% |
| CTTAAATTCAAATTACCAGC+TGG | - | chr5_1:59629459-59629478 | Msa0740610:five_prime_UTR | 30.0% | |
| TGGTTGGGATAGATATTAAG+AGG | + | chr5_1:59624730-59624749 | None:intergenic | 35.0% | |
| !! | CATTCGGTTTTTGTTTGGTT+GGG | + | chr5_1:59624745-59624764 | None:intergenic | 35.0% |
| !! | TCATTCGGTTTTTGTTTGGT+TGG | + | chr5_1:59624746-59624765 | None:intergenic | 35.0% |
| GTCACATTCGAACATTCATT+CGG | + | chr5_1:59624761-59624780 | None:intergenic | 35.0% | |
| GAATGTGACTACATAGTACT+TGG | - | chr5_1:59624772-59624791 | Msa0740610:three_prime_UTR | 35.0% | |
| CGACATTAGAGAGTGAAATT+TGG | - | chr5_1:59625390-59625409 | Msa0740610:intron | 35.0% | |
| ACCTATAGTAGAAAAGATGG+TGG | - | chr5_1:59625418-59625437 | Msa0740610:intron | 35.0% | |
| ! | TCCACCATCTTTTCTACTAT+AGG | + | chr5_1:59625422-59625441 | None:intergenic | 35.0% |
| AAAATAGGCTTAGGTGGTTT+GGG | - | chr5_1:59625441-59625460 | Msa0740610:intron | 35.0% | |
| AGATGTAGAGGTTATTCAGT+TGG | - | chr5_1:59625586-59625605 | Msa0740610:intron | 35.0% | |
| ACAAACAAACAACAACAACC+GGG | + | chr5_1:59625668-59625687 | None:intergenic | 35.0% | |
| CTCAACAGTTCTATCTATCA+AGG | + | chr5_1:59625902-59625921 | None:intergenic | 35.0% | |
| !! | AAGTTGGTAATGATGAGAGA+TGG | + | chr5_1:59625971-59625990 | None:intergenic | 35.0% |
| AGACATGAAGAAACAGAAGT+TGG | + | chr5_1:59625987-59626006 | None:intergenic | 35.0% | |
| AGGCAACTCATTAAAGTTTG+CGG | - | chr5_1:59626019-59626038 | Msa0740610:intron | 35.0% | |
| TTCCGATTTCGAATTGAAAG+CGG | + | chr5_1:59626047-59626066 | None:intergenic | 35.0% | |
| ! | AGTCATCTAGTTCAGAAACA+AGG | - | chr5_1:59626120-59626139 | Msa0740610:intron | 35.0% |
| ! | CTGGTTCCATTAAGTGATTT+TGG | - | chr5_1:59626194-59626213 | Msa0740610:intron | 35.0% |
| !!! | CCATTAAGTGATTTTGGGTT+CGG | - | chr5_1:59626200-59626219 | Msa0740610:intron | 35.0% |
| GATACTATTTGTGCTCAGTA+TGG | - | chr5_1:59626274-59626293 | Msa0740610:intron | 35.0% | |
| !! | TCCTTCCTTGAAAAGTATTG+AGG | - | chr5_1:59626436-59626455 | Msa0740610:CDS | 35.0% |
| ! | AACTGCCTCAATACTTTTCA+AGG | + | chr5_1:59626444-59626463 | None:intergenic | 35.0% |
| TTTAGCATCAATTGAGACAC+TGG | + | chr5_1:59626543-59626562 | None:intergenic | 35.0% | |
| ! | CACTAGAGATTCGTATTGAT+TGG | + | chr5_1:59626572-59626591 | None:intergenic | 35.0% |
| CGGAATTCATCGCAATAAAT+TGG | + | chr5_1:59626629-59626648 | None:intergenic | 35.0% | |
| TGCGATAGAGAAAAGATCAA+GGG | - | chr5_1:59627053-59627072 | Msa0740610:CDS | 35.0% | |
| TTTCATCCAAACTTACTCCT+TGG | + | chr5_1:59627082-59627101 | None:intergenic | 35.0% | |
| AGGAGTAAGTTTGGATGAAA+TGG | - | chr5_1:59627082-59627101 | Msa0740610:CDS | 35.0% | |
| AGTAAGTTTGGATGAAATGG+TGG | - | chr5_1:59627085-59627104 | Msa0740610:CDS | 35.0% | |
| GTAAGTTTGGATGAAATGGT+GGG | - | chr5_1:59627086-59627105 | Msa0740610:CDS | 35.0% | |
| !!! | TGAACGAGTTTTTGCTGTTA+TGG | - | chr5_1:59627172-59627191 | Msa0740610:CDS | 35.0% |
| !!! | TGTTATTTTACCTGTGTGCT+TGG | - | chr5_1:59627227-59627246 | Msa0740610:CDS | 35.0% |
| TGCATGAATCCACTTTCTAT+TGG | + | chr5_1:59627304-59627323 | None:intergenic | 35.0% | |
| TCTCTTACCCTAACTTCTAT+CGG | - | chr5_1:59627360-59627379 | Msa0740610:intron | 35.0% | |
| GTTGTCTTGGACATAATCTT+TGG | - | chr5_1:59627384-59627403 | Msa0740610:intron | 35.0% | |
| ! | TTGGACATAATCTTTGGCTT+TGG | - | chr5_1:59627390-59627409 | Msa0740610:intron | 35.0% |
| !! | ACATAATCTTTGGCTTTGGT+AGG | - | chr5_1:59627394-59627413 | Msa0740610:intron | 35.0% |
| AATATGTGTCTGCAGCTTTA+TGG | - | chr5_1:59627517-59627536 | Msa0740610:intron | 35.0% | |
| TCTAGATGTTCAACCTTTGT+TGG | - | chr5_1:59627637-59627656 | Msa0740610:intron | 35.0% | |
| AACTCTCAACTTCCTTCAAT+AGG | + | chr5_1:59627682-59627701 | None:intergenic | 35.0% | |
| TGACAAACTCAATAACCTCT+TGG | - | chr5_1:59627844-59627863 | Msa0740610:CDS | 35.0% | |
| GAGACTTGTCAGAGATTTAA+TGG | - | chr5_1:59627884-59627903 | Msa0740610:CDS | 35.0% | |
| CTGATTTAAACTTAGGACGA+GGG | + | chr5_1:59627951-59627970 | None:intergenic | 35.0% | |
| ! | ACTGATTTAAACTTAGGACG+AGG | + | chr5_1:59627952-59627971 | None:intergenic | 35.0% |
| CGCACAAATCTTATCACATA+AGG | + | chr5_1:59628003-59628022 | None:intergenic | 35.0% | |
| AATTCAACTCTCCTGAAACA+TGG | - | chr5_1:59628216-59628235 | Msa0740610:exon | 35.0% | |
| TTCCCTTTGTGTATTCAGAA+AGG | - | chr5_1:59628254-59628273 | Msa0740610:five_prime_UTR | 35.0% | |
| TCAAACCTCAATGTTCTTCA+AGG | + | chr5_1:59628349-59628368 | None:intergenic | 35.0% | |
| GCAGAATATTACCTCTGATA+TGG | - | chr5_1:59628443-59628462 | Msa0740610:intron | 35.0% | |
| AGTAAAACCTACCATATCAG+AGG | + | chr5_1:59628457-59628476 | None:intergenic | 35.0% | |
| ! | TCTGATATGGTAGGTTTTAC+TGG | - | chr5_1:59628456-59628475 | Msa0740610:intron | 35.0% |
| TACTTATCAAGAATCTCAGC+AGG | - | chr5_1:59628508-59628527 | Msa0740610:intron | 35.0% | |
| !!! | AAATTGTTTTGGAGAGCTTG+CGG | - | chr5_1:59628703-59628722 | Msa0740610:intron | 35.0% |
| CTTATGACATGTCCATAAGT+TGG | - | chr5_1:59628732-59628751 | Msa0740610:intron | 35.0% | |
| GGATGAACAGCTTAATTAAG+CGG | + | chr5_1:59628891-59628910 | None:intergenic | 35.0% | |
| AATTAAGCTGTTCATCCAAC+AGG | - | chr5_1:59628894-59628913 | Msa0740610:intron | 35.0% | |
| ATTAAGCTGTTCATCCAACA+GGG | - | chr5_1:59628895-59628914 | Msa0740610:intron | 35.0% | |
| GCAAGAAGAAAGATAGACTT+AGG | + | chr5_1:59628921-59628940 | None:intergenic | 35.0% | |
| TTGGTTTCTGCTCAAGTTAT+TGG | - | chr5_1:59629032-59629051 | Msa0740610:intron | 35.0% | |
| TGGTTTCTGCTCAAGTTATT+GGG | - | chr5_1:59629033-59629052 | Msa0740610:intron | 35.0% | |
| CATTAAACTACACTGTTGCA+TGG | + | chr5_1:59629223-59629242 | None:intergenic | 35.0% | |
| ! | TTAGTTGCTCTCTCTTCTTT+TGG | - | chr5_1:59629355-59629374 | Msa0740610:five_prime_UTR | 35.0% |
| !! | GCTTTTTAAGCTGTGAAAAC+TGG | - | chr5_1:59629401-59629420 | Msa0740610:five_prime_UTR | 35.0% |
| TTAAGCTGTGAAAACTGGAT+TGG | - | chr5_1:59629406-59629425 | Msa0740610:five_prime_UTR | 35.0% | |
| TTTGTGAATCCTGACCTTTC+TGG | + | chr5_1:59624668-59624687 | None:intergenic | 40.0% | |
| AGGTCAGGATTCACAAAGAT+CGG | - | chr5_1:59624671-59624690 | Msa0740610:three_prime_UTR | 40.0% | |
| TCTCTTCCATCAACACTGTA+AGG | - | chr5_1:59624872-59624891 | Msa0740610:three_prime_UTR | 40.0% | |
| ! | TACGTACCTTACAGTGTTGA+TGG | + | chr5_1:59624881-59624900 | None:intergenic | 40.0% |
| !! | AGATGGTGGAAAATAGGCTT+AGG | - | chr5_1:59625432-59625451 | Msa0740610:intron | 40.0% |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr5_1:59625440-59625459 | Msa0740610:intron | 40.0% | |
| CAAACAAACAACAACAACCG+GGG | + | chr5_1:59625667-59625686 | None:intergenic | 40.0% | |
| !!! | GAACTGTTGAGTTTTGAGCA+AGG | - | chr5_1:59625911-59625930 | Msa0740610:intron | 40.0% |
| !! | AGGTTGGTTTGAAGATGGTT+GGG | - | chr5_1:59625934-59625953 | Msa0740610:intron | 40.0% |
| !! | ATGATGAGAGATGGATTGCA+GGG | + | chr5_1:59625962-59625981 | None:intergenic | 40.0% |
| !! | AATGATGAGAGATGGATTGC+AGG | + | chr5_1:59625963-59625982 | None:intergenic | 40.0% |
| TCATGTCTGATTTCTCTACC+AGG | - | chr5_1:59625999-59626018 | Msa0740610:intron | 40.0% | |
| GCAAACTTTAATGAGTTGCC+TGG | + | chr5_1:59626020-59626039 | None:intergenic | 40.0% | |
| ATGTCGAATACAACTGCAAG+TGG | + | chr5_1:59626149-59626168 | None:intergenic | 40.0% | |
| TCGACATTCCTAGACGTATT+TGG | - | chr5_1:59626162-59626181 | Msa0740610:intron | 40.0% | |
| GTTTGCTTCCAAATACGTCT+AGG | + | chr5_1:59626173-59626192 | None:intergenic | 40.0% | |
| ACGTATTTGGAAGCAAACAC+TGG | - | chr5_1:59626175-59626194 | Msa0740610:intron | 40.0% | |
| CCGAACCCAAAATCACTTAA+TGG | + | chr5_1:59626203-59626222 | None:intergenic | 40.0% | |
| !!! | GTTGGACTGTTTTTGGTATC+TGG | - | chr5_1:59626248-59626267 | Msa0740610:intron | 40.0% |
| TATTTGTGCTCAGTATGGCT+TGG | - | chr5_1:59626279-59626298 | Msa0740610:intron | 40.0% | |
| TGCCGTGTACTTTCTGAATT+TGG | + | chr5_1:59626327-59626346 | None:intergenic | 40.0% | |
| !! | GCCTCAATACTTTTCAAGGA+AGG | + | chr5_1:59626440-59626459 | None:intergenic | 40.0% |
| ACCAAAGAACTCATTCGTTG+AGG | - | chr5_1:59626914-59626933 | Msa0740610:intron | 40.0% | |
| ACCTCAACGAATGAGTTCTT+TGG | + | chr5_1:59626918-59626937 | None:intergenic | 40.0% | |
| ! | TAACCAGTCAGGTCTTTTGA+TGG | - | chr5_1:59626938-59626957 | Msa0740610:intron | 40.0% |
| TTTCCATCAAAAGACCTGAC+TGG | + | chr5_1:59626944-59626963 | None:intergenic | 40.0% | |
| TTAGCACATTCTTCGTCAAG+AGG | + | chr5_1:59627017-59627036 | None:intergenic | 40.0% | |
| GACGAAGAATGTGCTAAAGA+AGG | - | chr5_1:59627020-59627039 | Msa0740610:CDS | 40.0% | |
| GTGCGATAGAGAAAAGATCA+AGG | - | chr5_1:59627052-59627071 | Msa0740610:CDS | 40.0% | |
| TATCGTCAACAGCTACTCAT+TGG | - | chr5_1:59627148-59627167 | Msa0740610:CDS | 40.0% | |
| GATAGAAGTTAGGGTAAGAG+AGG | + | chr5_1:59627361-59627380 | None:intergenic | 40.0% | |
| GACAACACCGATAGAAGTTA+GGG | + | chr5_1:59627370-59627389 | None:intergenic | 40.0% | |
| AGACAACACCGATAGAAGTT+AGG | + | chr5_1:59627371-59627390 | None:intergenic | 40.0% | |
| !! | AACTTCTATCGGTGTTGTCT+TGG | - | chr5_1:59627371-59627390 | Msa0740610:intron | 40.0% |
| AATCATCAGAAGCTAGGGTA+AGG | + | chr5_1:59627715-59627734 | None:intergenic | 40.0% | |
| CCTCAAATCATCAGAAGCTA+GGG | + | chr5_1:59627720-59627739 | None:intergenic | 40.0% | |
| ACCTCAAATCATCAGAAGCT+AGG | + | chr5_1:59627721-59627740 | None:intergenic | 40.0% | |
| GCTTCTCTGTACGACTAATT+TGG | - | chr5_1:59627761-59627780 | Msa0740610:CDS | 40.0% | |
| TAGCACAATGTTGTTCGTGT+AGG | - | chr5_1:59627816-59627835 | Msa0740610:CDS | 40.0% | |
| AGCACAATGTTGTTCGTGTA+GGG | - | chr5_1:59627817-59627836 | Msa0740610:CDS | 40.0% | |
| GGGAAAAATATGAGGTTGTG+TGG | - | chr5_1:59627905-59627924 | Msa0740610:CDS | 40.0% | |
| ! | TTTAGGGTCTTCAACTGAAC+AGG | + | chr5_1:59628033-59628052 | None:intergenic | 40.0% |
| CGCCTTTCTGAATACACAAA+GGG | + | chr5_1:59628259-59628278 | None:intergenic | 40.0% | |
| TAAGTGTGTGTATGGACTTC+TGG | + | chr5_1:59628320-59628339 | None:intergenic | 40.0% | |
| GTTGTGGCAGAGGAAAAATA+TGG | + | chr5_1:59628591-59628610 | None:intergenic | 40.0% | |
| GGTTTCTGCTCAAGTTATTG+GGG | - | chr5_1:59629034-59629053 | Msa0740610:intron | 40.0% | |
| GGTCAGGATTCACAAAGATC+GGG | - | chr5_1:59624672-59624691 | Msa0740610:three_prime_UTR | 45.0% | |
| CTCTTCTCGTCTCTTCGATT+CGG | - | chr5_1:59624808-59624827 | Msa0740610:three_prime_UTR | 45.0% | |
| !! | CAGTGTTGATGGAAGAGAGA+GGG | + | chr5_1:59624870-59624889 | None:intergenic | 45.0% |
| !! | ACAGTGTTGATGGAAGAGAG+AGG | + | chr5_1:59624871-59624890 | None:intergenic | 45.0% |
| TGGTGGAAAATAGGCTTAGG+TGG | - | chr5_1:59625435-59625454 | Msa0740610:intron | 45.0% | |
| AAGGAGAGTAGACCAGATGA+AGG | - | chr5_1:59625503-59625522 | Msa0740610:intron | 45.0% | |
| AGGAGAGTAGACCAGATGAA+GGG | - | chr5_1:59625504-59625523 | Msa0740610:intron | 45.0% | |
| !!! | CTGTTGAGTTTTGAGCAAGG+AGG | - | chr5_1:59625914-59625933 | Msa0740610:intron | 45.0% |
| !!! | TGAGTTTTGAGCAAGGAGGT+TGG | - | chr5_1:59625918-59625937 | Msa0740610:intron | 45.0% |
| !! | CAAGGAGGTTGGTTTGAAGA+TGG | - | chr5_1:59625929-59625948 | Msa0740610:intron | 45.0% |
| !! | GAGGTTGGTTTGAAGATGGT+TGG | - | chr5_1:59625933-59625952 | Msa0740610:intron | 45.0% |
| ! | CGCCGCTTTCAATTCGAAAT+CGG | - | chr5_1:59626042-59626061 | Msa0740610:intron | 45.0% |
| GTTCGGTCGAAATAGTGTCT+GGG | - | chr5_1:59626217-59626236 | Msa0740610:intron | 45.0% | |
| ! | TTCGAGTTTGCTCAAGCTTG+TGG | - | chr5_1:59626350-59626369 | Msa0740610:intron | 45.0% |
| CAAGCTTGTGGTATAAGCAC+CGG | - | chr5_1:59626362-59626381 | Msa0740610:intron | 45.0% | |
| TCTGATTCTCACAGGTGTTC+CGG | + | chr5_1:59626384-59626403 | None:intergenic | 45.0% | |
| GAACACCTGTGAGAATCAGA+GGG | - | chr5_1:59626384-59626403 | Msa0740610:intron | 45.0% | |
| AACACCTGTGAGAATCAGAG+GGG | - | chr5_1:59626385-59626404 | Msa0740610:intron | 45.0% | |
| !! | AAGTATTGAGGCAGTTGTCG+AGG | - | chr5_1:59626448-59626467 | Msa0740610:CDS | 45.0% |
| ! | GCAGTTGTCGAGGTTTGTTT+CGG | - | chr5_1:59626458-59626477 | Msa0740610:CDS | 45.0% |
| ACACTGGTCGCATGTATCAT+AGG | + | chr5_1:59626527-59626546 | None:intergenic | 45.0% | |
| TTCGTTGAGGTTAACCAGTC+AGG | - | chr5_1:59626927-59626946 | Msa0740610:intron | 45.0% | |
| GAAAAGATCAAGGGTCACCA+AGG | - | chr5_1:59627062-59627081 | Msa0740610:CDS | 45.0% | |
| CATCACACCTGTGTAAGAAG+CGG | + | chr5_1:59627209-59627228 | None:intergenic | 45.0% | |
| ! | AGGTTGAACATCTAGAGCCA+TGG | + | chr5_1:59627633-59627652 | None:intergenic | 45.0% |
| CCCTAGCTTCTGATGATTTG+AGG | - | chr5_1:59627717-59627736 | Msa0740610:CDS | 45.0% | |
| GTCAGTTGCCTAAACACCAA+TGG | - | chr5_1:59627739-59627758 | Msa0740610:CDS | 45.0% | |
| ! | CAGAGAAGCCATTGGTGTTT+AGG | + | chr5_1:59627750-59627769 | None:intergenic | 45.0% |
| TAGTCGTACAGAGAAGCCAT+TGG | + | chr5_1:59627758-59627777 | None:intergenic | 45.0% | |
| GCACAATGTTGTTCGTGTAG+GGG | - | chr5_1:59627818-59627837 | Msa0740610:CDS | 45.0% | |
| GCGCCTTTCTGAATACACAA+AGG | + | chr5_1:59628260-59628279 | None:intergenic | 45.0% | |
| ! | CCTGTTGTATGCTACTTCAC+TGG | + | chr5_1:59628553-59628572 | None:intergenic | 45.0% |
| CCAGTGAAGTAGCATACAAC+AGG | - | chr5_1:59628550-59628569 | Msa0740610:intron | 45.0% | |
| TTCCTCTGCCACAACATTGA+AGG | - | chr5_1:59628596-59628615 | Msa0740610:intron | 45.0% | |
| AAGATAGACTTAGGCCCTGT+TGG | + | chr5_1:59628912-59628931 | None:intergenic | 45.0% | |
| CAAGTGACATGATCCACAGA+TGG | + | chr5_1:59629060-59629079 | None:intergenic | 45.0% | |
| !! | GCTGTGAAAACTGGATTGGT+TGG | - | chr5_1:59629410-59629429 | Msa0740610:five_prime_UTR | 45.0% |
| !! | TTATCGATTCGGAAACCAGC+TGG | + | chr5_1:59629477-59629496 | None:intergenic | 45.0% |
| !!! | ATTTTTAATAATTCATTTTA+CGG | + | chr5_1:59627483-59627502 | None:intergenic | 5.0% |
| TGATTCGACTGCCCTTCATC+TGG | + | chr5_1:59625518-59625537 | None:intergenic | 50.0% | |
| CAAACAACAACAACCGGGGT+CGG | + | chr5_1:59625663-59625682 | None:intergenic | 50.0% | |
| ! | GGTTCGGTCGAAATAGTGTC+TGG | - | chr5_1:59626216-59626235 | Msa0740610:intron | 50.0% |
| GGTCGAAATAGTGTCTGGGA+AGG | - | chr5_1:59626221-59626240 | Msa0740610:intron | 50.0% | |
| CGAAATAGTGTCTGGGAAGG+CGG | - | chr5_1:59626224-59626243 | Msa0740610:intron | 50.0% | |
| GAAATAGTGTCTGGGAAGGC+GGG | - | chr5_1:59626225-59626244 | Msa0740610:intron | 50.0% | |
| AAATAGTGTCTGGGAAGGCG+GGG | - | chr5_1:59626226-59626245 | Msa0740610:intron | 50.0% | |
| GGAACACCTGTGAGAATCAG+AGG | - | chr5_1:59626383-59626402 | Msa0740610:intron | 50.0% | |
| AGAATCAGAGGGGTCACTGT+TGG | - | chr5_1:59626395-59626414 | Msa0740610:intron | 50.0% | |
| !! | CCAACTGAAGGTGTCGGAAT+TGG | + | chr5_1:59626993-59627012 | None:intergenic | 50.0% |
| CCAATTCCGACACCTTCAGT+TGG | - | chr5_1:59626990-59627009 | Msa0740610:CDS | 50.0% | |
| ! | AGAGGACCAACTGAAGGTGT+CGG | + | chr5_1:59626999-59627018 | None:intergenic | 50.0% |
| TCGTCAAGAGGACCAACTGA+AGG | + | chr5_1:59627005-59627024 | None:intergenic | 50.0% | |
| GGGTCACCAAGGAGTAAGTT+TGG | - | chr5_1:59627073-59627092 | Msa0740610:CDS | 50.0% | |
| GTGGGAATATACACCCGTCT+CGG | - | chr5_1:59627104-59627123 | Msa0740610:CDS | 50.0% | |
| GGACGAGATGTAGAGGGAAT+TGG | - | chr5_1:59627125-59627144 | Msa0740610:CDS | 50.0% | |
| AGCAAGACCGCTTCTTACAC+AGG | - | chr5_1:59627199-59627218 | Msa0740610:CDS | 50.0% | |
| TTACCTGTGTGCTTGGCATG+TGG | - | chr5_1:59627234-59627253 | Msa0740610:CDS | 50.0% | |
| TTTCCACATGCCAAGCACAC+AGG | + | chr5_1:59627240-59627259 | None:intergenic | 50.0% | |
| ! | GTTAGGGTAAGAGAGGCACA+TGG | + | chr5_1:59627354-59627373 | None:intergenic | 50.0% |
| GATGCCTCAGATGAAAGCCA+TGG | - | chr5_1:59627613-59627632 | Msa0740610:intron | 50.0% | |
| AGAGCCATGGCTTTCATCTG+AGG | + | chr5_1:59627620-59627639 | None:intergenic | 50.0% | |
| TGTTCAACCTTTGTTGGCCG+AGG | - | chr5_1:59627643-59627662 | Msa0740610:intron | 50.0% | |
| CCTTCAATAGGCCGCTATCA+CGG | + | chr5_1:59627670-59627689 | None:intergenic | 50.0% | |
| AGAAGCTAGGGTAAGGCTTC+GGG | + | chr5_1:59627708-59627727 | None:intergenic | 50.0% | |
| CAGAAGCTAGGGTAAGGCTT+CGG | + | chr5_1:59627709-59627728 | None:intergenic | 50.0% | |
| GATCAGCTCAGCGTTCTCAT+TGG | + | chr5_1:59628298-59628317 | None:intergenic | 50.0% | |
| CTCCTTCAATGTTGTGGCAG+AGG | + | chr5_1:59628601-59628620 | None:intergenic | 50.0% | |
| !! | TTTGTGGTGTTGATGCGTGC+AGG | - | chr5_1:59628965-59628984 | Msa0740610:intron | 50.0% |
| CAAGTTATTGGGGCCATCTG+TGG | - | chr5_1:59629044-59629063 | Msa0740610:intron | 50.0% | |
| TTGATCCATGTAGCCGACCC+CGG | - | chr5_1:59625647-59625666 | Msa0740610:CDS | 55.0% | |
| ! | AGGCGGGGTTGGACTGTTTT+TGG | - | chr5_1:59626241-59626260 | Msa0740610:intron | 55.0% |
| GTGACCCCTCTGATTCTCAC+AGG | + | chr5_1:59626392-59626411 | None:intergenic | 55.0% | |
| ! | GGTGTCGGAATTGGATCACG+AGG | + | chr5_1:59626984-59627003 | None:intergenic | 55.0% |
| CTCTACATCTCGTCCGAGAC+GGG | + | chr5_1:59627120-59627139 | None:intergenic | 55.0% | |
| CCTCTACATCTCGTCCGAGA+CGG | + | chr5_1:59627121-59627140 | None:intergenic | 55.0% | |
| CGTCTCGGACGAGATGTAGA+GGG | - | chr5_1:59627119-59627138 | Msa0740610:CDS | 55.0% | |
| !! | CCGTGATAGCGGCCTATTGA+AGG | - | chr5_1:59627667-59627686 | Msa0740610:intron | 55.0% |
| AACAACCGGGGTCGGCTACA+TGG | + | chr5_1:59625655-59625674 | None:intergenic | 60.0% | |
| CCGTCTCGGACGAGATGTAG+AGG | - | chr5_1:59627118-59627137 | Msa0740610:CDS | 60.0% | |
| TCACGGACCTCGGCCAACAA+AGG | + | chr5_1:59627653-59627672 | None:intergenic | 60.0% | |
| TTGGCCGAGGTCCGTGATAG+CGG | - | chr5_1:59627656-59627675 | Msa0740610:intron | 60.0% | |
| TAGGCCGCTATCACGGACCT+CGG | + | chr5_1:59627663-59627682 | None:intergenic | 60.0% | |
| GGGCATCTGTGTTCTCGAGC+AGG | + | chr5_1:59627931-59627950 | None:intergenic | 60.0% | |
| AGTGTCTGGGAAGGCGGGGT+TGG | - | chr5_1:59626230-59626249 | Msa0740610:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 59624658 | 59629512 | 59624658 | ID=Msa0740610;Name=Msa0740610 |
| chr5_1 | mRNA | 59624658 | 59629512 | 59624658 | ID=Msa0740610-mRNA-1;Parent=Msa0740610;Name=Msa0740610-mRNA-1;_AED=0.18;_eAED=0.18;_QI=328|1|1|1|0.66|0.57|7|558|383 |
| chr5_1 | exon | 59624658 | 59625183 | 59624658 | ID=Msa0740610-mRNA-1:exon:17224;Parent=Msa0740610-mRNA-1 |
| chr5_1 | exon | 59625599 | 59625723 | 59625599 | ID=Msa0740610-mRNA-1:exon:17223;Parent=Msa0740610-mRNA-1 |
| chr5_1 | exon | 59625808 | 59625898 | 59625808 | ID=Msa0740610-mRNA-1:exon:17222;Parent=Msa0740610-mRNA-1 |
| chr5_1 | exon | 59626432 | 59626547 | 59626432 | ID=Msa0740610-mRNA-1:exon:17221;Parent=Msa0740610-mRNA-1 |
| chr5_1 | exon | 59626950 | 59627279 | 59626950 | ID=Msa0740610-mRNA-1:exon:17220;Parent=Msa0740610-mRNA-1 |
| chr5_1 | exon | 59627701 | 59628314 | 59627701 | ID=Msa0740610-mRNA-1:exon:17219;Parent=Msa0740610-mRNA-1 |
| chr5_1 | exon | 59629277 | 59629512 | 59629277 | ID=Msa0740610-mRNA-1:exon:17218;Parent=Msa0740610-mRNA-1 |
| chr5_1 | five_prime_UTR | 59629277 | 59629512 | 59629277 | ID=Msa0740610-mRNA-1:five_prime_utr;Parent=Msa0740610-mRNA-1 |
| chr5_1 | five_prime_UTR | 59628223 | 59628314 | 59628223 | ID=Msa0740610-mRNA-1:five_prime_utr;Parent=Msa0740610-mRNA-1 |
| chr5_1 | CDS | 59627701 | 59628222 | 59627701 | ID=Msa0740610-mRNA-1:cds;Parent=Msa0740610-mRNA-1 |
| chr5_1 | CDS | 59626950 | 59627279 | 59626950 | ID=Msa0740610-mRNA-1:cds;Parent=Msa0740610-mRNA-1 |
| chr5_1 | CDS | 59626432 | 59626547 | 59626432 | ID=Msa0740610-mRNA-1:cds;Parent=Msa0740610-mRNA-1 |
| chr5_1 | CDS | 59625808 | 59625898 | 59625808 | ID=Msa0740610-mRNA-1:cds;Parent=Msa0740610-mRNA-1 |
| chr5_1 | CDS | 59625631 | 59625723 | 59625631 | ID=Msa0740610-mRNA-1:cds;Parent=Msa0740610-mRNA-1 |
| chr5_1 | three_prime_UTR | 59625599 | 59625630 | 59625599 | ID=Msa0740610-mRNA-1:three_prime_utr;Parent=Msa0740610-mRNA-1 |
| chr5_1 | three_prime_UTR | 59624658 | 59625183 | 59624658 | ID=Msa0740610-mRNA-1:three_prime_utr;Parent=Msa0740610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
