Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777190 | A0A396J899 | 82.857 | 140 | 14 | 2 | 1 | 133 | 104 | 240 | 8.52e-71 | 231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0739350 | Msa0777190 | 0.844208 | 8.715034e-59 | -8.615850e-47 |
| Msa0777190 | Msa1015450 | 0.878666 | 2.335349e-69 | -8.615850e-47 |
| Msa0777190 | Msa1133620 | 0.871240 | 7.944164e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777190 | MtrunA17_Chr2g0309001 | 82.857 | 140 | 14 | 2 | 1 | 133 | 104 | 240 | 1.64e-74 | 231 |
| Msa0777190 | MtrunA17_Chr5g0419101 | 90.411 | 73 | 7 | 0 | 121 | 193 | 30 | 102 | 9.74e-41 | 134 |
| Msa0777190 | MtrunA17_Chr8g0356411 | 93.443 | 61 | 4 | 0 | 136 | 196 | 1 | 61 | 7.22e-35 | 117 |
| Msa0777190 | MtrunA17_Chr2g0309021 | 89.394 | 66 | 7 | 0 | 128 | 193 | 461 | 526 | 1.66e-32 | 122 |
| Msa0777190 | MtrunA17_Chr7g0242031 | 39.189 | 148 | 71 | 5 | 1 | 130 | 45 | 191 | 8.56e-24 | 97.8 |
| Msa0777190 | MtrunA17_Chr3g0097741 | 41.304 | 138 | 62 | 5 | 1 | 120 | 97 | 233 | 2.78e-23 | 96.7 |
| Msa0777190 | MtrunA17_Chr7g0226101 | 42.969 | 128 | 57 | 5 | 1 | 120 | 1 | 120 | 1.65e-21 | 91.7 |
| Msa0777190 | MtrunA17_Chr5g0415911 | 42.000 | 100 | 51 | 1 | 28 | 120 | 113 | 212 | 6.15e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGATTTATGCGTTGTTAA+AGG | 0.165726 | 5_2:-56023144 | Msa0777190:CDS |
| TTAGCCTCGTAGAATGAATT+AGG | 0.235420 | 5_2:+56022966 | Msa0777180:intron |
| CAAAGCCATGACTATGATTC+TGG | 0.297800 | 5_2:-56023024 | Msa0777190:CDS |
| CAATATAACATACAATCATT+TGG | 0.327224 | 5_2:+56022894 | Msa0777180:intron |
| TTGTGTATCATTGGGAAATA+AGG | 0.351637 | 5_2:+56022288 | Msa0777180:intron |
| GTCAATGATGCATTTGGAAT+TGG | 0.398868 | 5_2:-56023248 | Msa0777190:CDS |
| TTATACCTGTTGTGTATCAT+TGG | 0.404371 | 5_2:+56022279 | Msa0777180:intron |
| AATATAACATACAATCATTT+GGG | 0.410782 | 5_2:+56022895 | Msa0777180:intron |
| GATGATCTAGATATGTCATT+AGG | 0.423580 | 5_2:+56021608 | Msa0777180:intron |
| ATCATCAACAAACTTGGTCT+TGG | 0.426063 | 5_2:-56022939 | Msa0777190:CDS |
| TGCAACTATGGAGGCTCAAA+TGG | 0.437214 | 5_2:-56022374 | Msa0777190:CDS |
| GCTCAAATGGCAGCACTTGT+TGG | 0.439947 | 5_2:-56022361 | Msa0777190:CDS |
| TCCTCTGTGCATAACAATGA+AGG | 0.459428 | 5_2:-56023197 | Msa0777190:CDS |
| AACATGGTCAATGATGCATT+TGG | 0.460772 | 5_2:-56023254 | Msa0777190:CDS |
| ATTTCCCAATGATACACAAC+AGG | 0.483592 | 5_2:-56022284 | Msa0777190:intron |
| AATAAGGCAGCAGCTAACTC+TGG | 0.498255 | 5_2:+56022304 | Msa0777180:intron |
| GCAAATGAAGAATTATATGA+AGG | 0.512125 | 5_2:-56023119 | Msa0777190:CDS |
| AAGAAAATCATCAACAAACT+TGG | 0.513089 | 5_2:-56022945 | Msa0777190:CDS |
| TGGAATTGGTCGAAACAACC+TGG | 0.516501 | 5_2:-56023234 | Msa0777190:CDS |
| TTCAAGCGGCAGTTCTGCAT+TGG | 0.518225 | 5_2:-56022410 | Msa0777190:CDS |
| ATACAATCATTTGGGCAAGC+AGG | 0.533435 | 5_2:+56022903 | Msa0777180:intron |
| TATACCTGTTGTGTATCATT+GGG | 0.541600 | 5_2:+56022280 | Msa0777180:intron |
| CTAGATATGTCATTAGGTGT+TGG | 0.547570 | 5_2:+56021614 | Msa0777180:intron |
| TCATTGTTATGCACAGAGGA+TGG | 0.552649 | 5_2:+56023200 | Msa0777180:intron |
| AGGATGGAACAGCATCGTCC+AGG | 0.553722 | 5_2:+56023216 | Msa0777180:intron |
| TACATTAAAGCGAAGGAAGG+TGG | 0.589028 | 5_2:-56022337 | Msa0777190:CDS |
| CAAATGAAGAATTATATGAA+GGG | 0.594831 | 5_2:-56023118 | Msa0777190:CDS |
| CAATTCCAGAATCATAGTCA+TGG | 0.605123 | 5_2:+56023019 | Msa0777180:intron |
| CCTCTGTGCATAACAATGAA+GGG | 0.607208 | 5_2:-56023196 | Msa0777190:CDS |
| TGTTGGCTACATTAAAGCGA+AGG | 0.611559 | 5_2:-56022344 | Msa0777190:CDS |
| GGCTACATTAAAGCGAAGGA+AGG | 0.617737 | 5_2:-56022340 | Msa0777190:CDS |
| ACAAAATCCAATGGAAAACA+TGG | 0.628430 | 5_2:-56023270 | None:intergenic |
| CCCTTCATTGTTATGCACAG+AGG | 0.656414 | 5_2:+56023196 | Msa0777180:intron |
| TTTCGAGGTAGTACTTCAAG+CGG | 0.664437 | 5_2:-56022424 | Msa0777190:intron |
| TCAGATGAAAGCAACGCACG+TGG | 0.667433 | 5_2:-56021587 | Msa0777190:CDS |
| AAGGCAGCAGCTAACTCTGG+AGG | 0.673734 | 5_2:+56022307 | Msa0777180:intron |
| GATTCCTAATTCATTCTACG+AGG | 0.738274 | 5_2:-56022970 | Msa0777190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAACATACAATCATTT+GGG | + | chr5_2:56021939-56021958 | Msa0777180:intron | 15.0% |
| !! | AAATGATTGTATGTTATATT+GGG | - | chr5_2:56021939-56021958 | Msa0777190:intron | 15.0% |
| !!! | AGAATAAATGAAAGTTTTAA+GGG | - | chr5_2:56022811-56022830 | Msa0777190:intron | 15.0% |
| !!! | TTTGATGATATTTTACAAAA+TGG | - | chr5_2:56022931-56022950 | Msa0777190:CDS | 15.0% |
| !!! | CAATTATGAAAAATTGATTT+TGG | - | chr5_2:56023055-56023074 | Msa0777190:intron | 15.0% |
| !!! | CAATTATAATATTTTTTTGC+AGG | - | chr5_2:56023171-56023190 | Msa0777190:CDS | 15.0% |
| !! | AATATAACATACAATCATTT+GGG | + | chr5_2:56021939-56021958 | Msa0777180:intron | 15.0% |
| !! | AAATGATTGTATGTTATATT+GGG | - | chr5_2:56021939-56021958 | Msa0777190:intron | 15.0% |
| !!! | AGAATAAATGAAAGTTTTAA+GGG | - | chr5_2:56022811-56022830 | Msa0777190:intron | 15.0% |
| !!! | TTTGATGATATTTTACAAAA+TGG | - | chr5_2:56022931-56022950 | Msa0777190:CDS | 15.0% |
| !!! | CAATTATGAAAAATTGATTT+TGG | - | chr5_2:56023055-56023074 | Msa0777190:intron | 15.0% |
| !!! | CAATTATAATATTTTTTTGC+AGG | - | chr5_2:56023171-56023190 | Msa0777190:CDS | 15.0% |
| !! | CAAATGAAGAATTATATGAA+GGG | - | chr5_2:56021713-56021732 | Msa0777190:intron | 20.0% |
| !! | CAATATAACATACAATCATT+TGG | + | chr5_2:56021940-56021959 | Msa0777180:intron | 20.0% |
| !! | CAAATGATTGTATGTTATAT+TGG | - | chr5_2:56021938-56021957 | Msa0777190:intron | 20.0% |
| !! | AATGATTGTATGTTATATTG+GGG | - | chr5_2:56021940-56021959 | Msa0777190:intron | 20.0% |
| !!! | CTTCACTTATTTTATAACTT+GGG | + | chr5_2:56022694-56022713 | Msa0777180:intron | 20.0% |
| !!! | TCTTCACTTATTTTATAACT+TGG | + | chr5_2:56022695-56022714 | Msa0777180:intron | 20.0% |
| !!! | GAGAATAAATGAAAGTTTTA+AGG | - | chr5_2:56022810-56022829 | Msa0777190:intron | 20.0% |
| !! | TCATATTACATAACAACATT+TGG | + | chr5_2:56022844-56022863 | Msa0777180:intron | 20.0% |
| !!! | TAATAACTTTTACTTTGCTT+AGG | - | chr5_2:56023108-56023127 | Msa0777190:CDS | 20.0% |
| !! | CAAATGAAGAATTATATGAA+GGG | - | chr5_2:56021713-56021732 | Msa0777190:intron | 20.0% |
| !! | CAATATAACATACAATCATT+TGG | + | chr5_2:56021940-56021959 | Msa0777180:intron | 20.0% |
| !! | CAAATGATTGTATGTTATAT+TGG | - | chr5_2:56021938-56021957 | Msa0777190:intron | 20.0% |
| !! | AATGATTGTATGTTATATTG+GGG | - | chr5_2:56021940-56021959 | Msa0777190:intron | 20.0% |
| !!! | CTTCACTTATTTTATAACTT+GGG | + | chr5_2:56022694-56022713 | Msa0777180:intron | 20.0% |
| !!! | TCTTCACTTATTTTATAACT+TGG | + | chr5_2:56022695-56022714 | Msa0777180:intron | 20.0% |
| !!! | GAGAATAAATGAAAGTTTTA+AGG | - | chr5_2:56022810-56022829 | Msa0777190:intron | 20.0% |
| !! | TCATATTACATAACAACATT+TGG | + | chr5_2:56022844-56022863 | Msa0777180:intron | 20.0% |
| !!! | TAATAACTTTTACTTTGCTT+AGG | - | chr5_2:56023108-56023127 | Msa0777190:CDS | 20.0% |
| ! | GCAAATGAAGAATTATATGA+AGG | - | chr5_2:56021712-56021731 | Msa0777190:intron | 25.0% |
| ! | AAGAAAATCATCAACAAACT+TGG | - | chr5_2:56021886-56021905 | Msa0777190:intron | 25.0% |
| ! | TATATATTTAGCAATGAGGA+AGG | + | chr5_2:56022637-56022656 | Msa0777180:intron | 25.0% |
| ! | TCTCTATATATTTAGCAATG+AGG | + | chr5_2:56022641-56022660 | Msa0777180:intron | 25.0% |
| !!! | AATGAAAGTTTTAAGGGTTA+CGG | - | chr5_2:56022817-56022836 | Msa0777190:intron | 25.0% |
| ! | AAAATGGATCTTAATGCTAT+TGG | - | chr5_2:56022947-56022966 | Msa0777190:CDS | 25.0% |
| ! | AAATGGATCTTAATGCTATT+GGG | - | chr5_2:56022948-56022967 | Msa0777190:CDS | 25.0% |
| ! | GCAAATGAAGAATTATATGA+AGG | - | chr5_2:56021712-56021731 | Msa0777190:intron | 25.0% |
| ! | AAGAAAATCATCAACAAACT+TGG | - | chr5_2:56021886-56021905 | Msa0777190:intron | 25.0% |
| ! | TATATATTTAGCAATGAGGA+AGG | + | chr5_2:56022637-56022656 | Msa0777180:intron | 25.0% |
| ! | TCTCTATATATTTAGCAATG+AGG | + | chr5_2:56022641-56022660 | Msa0777180:intron | 25.0% |
| !!! | AATGAAAGTTTTAAGGGTTA+CGG | - | chr5_2:56022817-56022836 | Msa0777190:intron | 25.0% |
| ! | AAAATGGATCTTAATGCTAT+TGG | - | chr5_2:56022947-56022966 | Msa0777190:CDS | 25.0% |
| ! | AAATGGATCTTAATGCTATT+GGG | - | chr5_2:56022948-56022967 | Msa0777190:CDS | 25.0% |
| AAATATGCAAGACATCTAAG+TGG | - | chr5_2:56021992-56022011 | Msa0777190:intron | 30.0% | |
| TTGAACTCATAACTCCAAAA+GGG | + | chr5_2:56022266-56022285 | Msa0777180:intron | 30.0% | |
| TTTGAACTCATAACTCCAAA+AGG | + | chr5_2:56022267-56022286 | Msa0777180:intron | 30.0% | |
| GTATGCTTAAAAGCAATAGT+AGG | + | chr5_2:56022353-56022372 | Msa0777180:intron | 30.0% | |
| TTGTGTATCATTGGGAAATA+AGG | + | chr5_2:56022546-56022565 | Msa0777180:intron | 30.0% | |
| TATACCTGTTGTGTATCATT+GGG | + | chr5_2:56022554-56022573 | Msa0777180:intron | 30.0% | |
| TTATACCTGTTGTGTATCAT+TGG | + | chr5_2:56022555-56022574 | Msa0777180:intron | 30.0% | |
| ! | ATTTTATAACTTGGGCCTTT+TGG | + | chr5_2:56022686-56022705 | Msa0777180:intron | 30.0% |
| ! | GATTAGTCATTATCAACTCT+TGG | + | chr5_2:56022721-56022740 | Msa0777180:intron | 30.0% |
| ! | ATCAGTAAAACGCAATTTTG+TGG | - | chr5_2:56022758-56022777 | Msa0777190:intron | 30.0% |
| GATGATCTAGATATGTCATT+AGG | + | chr5_2:56023226-56023245 | Msa0777180:intron | 30.0% | |
| AAATATGCAAGACATCTAAG+TGG | - | chr5_2:56021992-56022011 | Msa0777190:intron | 30.0% | |
| TTGAACTCATAACTCCAAAA+GGG | + | chr5_2:56022266-56022285 | Msa0777180:intron | 30.0% | |
| TTTGAACTCATAACTCCAAA+AGG | + | chr5_2:56022267-56022286 | Msa0777180:intron | 30.0% | |
| GTATGCTTAAAAGCAATAGT+AGG | + | chr5_2:56022353-56022372 | Msa0777180:intron | 30.0% | |
| TTGTGTATCATTGGGAAATA+AGG | + | chr5_2:56022546-56022565 | Msa0777180:intron | 30.0% | |
| TATACCTGTTGTGTATCATT+GGG | + | chr5_2:56022554-56022573 | Msa0777180:intron | 30.0% | |
| TTATACCTGTTGTGTATCAT+TGG | + | chr5_2:56022555-56022574 | Msa0777180:intron | 30.0% | |
| ! | ATTTTATAACTTGGGCCTTT+TGG | + | chr5_2:56022686-56022705 | Msa0777180:intron | 30.0% |
| ! | GATTAGTCATTATCAACTCT+TGG | + | chr5_2:56022721-56022740 | Msa0777180:intron | 30.0% |
| ! | ATCAGTAAAACGCAATTTTG+TGG | - | chr5_2:56022758-56022777 | Msa0777190:intron | 30.0% |
| GATGATCTAGATATGTCATT+AGG | + | chr5_2:56023226-56023245 | Msa0777180:intron | 30.0% | |
| AACATGGTCAATGATGCATT+TGG | - | chr5_2:56021577-56021596 | Msa0777190:CDS | 35.0% | |
| ! | GTCAATGATGCATTTGGAAT+TGG | - | chr5_2:56021583-56021602 | Msa0777190:CDS | 35.0% |
| CGAGATTTATGCGTTGTTAA+AGG | - | chr5_2:56021687-56021706 | Msa0777190:intron | 35.0% | |
| CAATTCCAGAATCATAGTCA+TGG | + | chr5_2:56021815-56021834 | Msa0777180:intron | 35.0% | |
| GATTCCTAATTCATTCTACG+AGG | - | chr5_2:56021861-56021880 | Msa0777190:intron | 35.0% | |
| TTAGCCTCGTAGAATGAATT+AGG | + | chr5_2:56021868-56021887 | Msa0777180:intron | 35.0% | |
| ATCATCAACAAACTTGGTCT+TGG | - | chr5_2:56021892-56021911 | Msa0777190:intron | 35.0% | |
| GGGTGAAGAAAATCAAGAAT+TGG | - | chr5_2:56021960-56021979 | Msa0777190:intron | 35.0% | |
| ATAAATAGCCTCTGCAATCT+TGG | + | chr5_2:56022072-56022091 | Msa0777180:intron | 35.0% | |
| AAGATTGCAGAGGCTATTTA+TGG | - | chr5_2:56022071-56022090 | Msa0777190:intron | 35.0% | |
| AGATTGCAGAGGCTATTTAT+GGG | - | chr5_2:56022072-56022091 | Msa0777190:intron | 35.0% | |
| TGAGTTCAAACTACAGCATT+TGG | - | chr5_2:56022277-56022296 | Msa0777190:intron | 35.0% | |
| GAACCAAAAACTTGCAACTA+TGG | - | chr5_2:56022445-56022464 | Msa0777190:intron | 35.0% | |
| ATTTCCCAATGATACACAAC+AGG | - | chr5_2:56022547-56022566 | Msa0777190:intron | 35.0% | |
| ! | ATTTTGTGCATGTGTCTTTC+TGG | - | chr5_2:56022596-56022615 | Msa0777190:intron | 35.0% |
| TATACCACTACCACTATTAC+CGG | - | chr5_2:56022876-56022895 | Msa0777190:intron | 35.0% | |
| ! | CTTTGCTTAGGTTGTTGAAT+TGG | - | chr5_2:56023120-56023139 | Msa0777190:CDS | 35.0% |
| CTAGATATGTCATTAGGTGT+TGG | + | chr5_2:56023220-56023239 | Msa0777180:intron | 35.0% | |
| AACATGGTCAATGATGCATT+TGG | - | chr5_2:56021577-56021596 | Msa0777190:CDS | 35.0% | |
| ! | GTCAATGATGCATTTGGAAT+TGG | - | chr5_2:56021583-56021602 | Msa0777190:CDS | 35.0% |
| CGAGATTTATGCGTTGTTAA+AGG | - | chr5_2:56021687-56021706 | Msa0777190:intron | 35.0% | |
| CAATTCCAGAATCATAGTCA+TGG | + | chr5_2:56021815-56021834 | Msa0777180:intron | 35.0% | |
| GATTCCTAATTCATTCTACG+AGG | - | chr5_2:56021861-56021880 | Msa0777190:intron | 35.0% | |
| TTAGCCTCGTAGAATGAATT+AGG | + | chr5_2:56021868-56021887 | Msa0777180:intron | 35.0% | |
| ATCATCAACAAACTTGGTCT+TGG | - | chr5_2:56021892-56021911 | Msa0777190:intron | 35.0% | |
| GGGTGAAGAAAATCAAGAAT+TGG | - | chr5_2:56021960-56021979 | Msa0777190:intron | 35.0% | |
| ATAAATAGCCTCTGCAATCT+TGG | + | chr5_2:56022072-56022091 | Msa0777180:intron | 35.0% | |
| AAGATTGCAGAGGCTATTTA+TGG | - | chr5_2:56022071-56022090 | Msa0777190:intron | 35.0% | |
| AGATTGCAGAGGCTATTTAT+GGG | - | chr5_2:56022072-56022091 | Msa0777190:intron | 35.0% | |
| TGAGTTCAAACTACAGCATT+TGG | - | chr5_2:56022277-56022296 | Msa0777190:intron | 35.0% | |
| GAACCAAAAACTTGCAACTA+TGG | - | chr5_2:56022445-56022464 | Msa0777190:intron | 35.0% | |
| ATTTCCCAATGATACACAAC+AGG | - | chr5_2:56022547-56022566 | Msa0777190:intron | 35.0% | |
| ! | ATTTTGTGCATGTGTCTTTC+TGG | - | chr5_2:56022596-56022615 | Msa0777190:intron | 35.0% |
| TATACCACTACCACTATTAC+CGG | - | chr5_2:56022876-56022895 | Msa0777190:intron | 35.0% | |
| ! | CTTTGCTTAGGTTGTTGAAT+TGG | - | chr5_2:56023120-56023139 | Msa0777190:CDS | 35.0% |
| CTAGATATGTCATTAGGTGT+TGG | + | chr5_2:56023220-56023239 | Msa0777180:intron | 35.0% | |
| TCATTGTTATGCACAGAGGA+TGG | + | chr5_2:56021634-56021653 | Msa0777180:intron | 40.0% | |
| TCCTCTGTGCATAACAATGA+AGG | - | chr5_2:56021634-56021653 | Msa0777190:CDS | 40.0% | |
| CCTCTGTGCATAACAATGAA+GGG | - | chr5_2:56021635-56021654 | Msa0777190:CDS | 40.0% | |
| CAAAGCCATGACTATGATTC+TGG | - | chr5_2:56021807-56021826 | Msa0777190:intron | 40.0% | |
| ATACAATCATTTGGGCAAGC+AGG | + | chr5_2:56021931-56021950 | Msa0777180:intron | 40.0% | |
| ATGCAAGACATCTAAGTGGA+AGG | - | chr5_2:56021996-56022015 | Msa0777190:intron | 40.0% | |
| AAGTAGCGCAATATCTTTGC+AGG | + | chr5_2:56022039-56022058 | Msa0777180:intron | 40.0% | |
| CATTGGATGGTAACCAAGAT+GGG | - | chr5_2:56022127-56022146 | Msa0777190:intron | 40.0% | |
| TCCAAAAGGGTTAAAGCCAT+CGG | + | chr5_2:56022253-56022272 | Msa0777180:intron | 40.0% | |
| TTCAAACTACAGCATTTGGC+CGG | - | chr5_2:56022281-56022300 | Msa0777190:intron | 40.0% | |
| TTGTATGGGATAAGAACCAC+CGG | + | chr5_2:56022303-56022322 | Msa0777180:intron | 40.0% | |
| TTTCGAGGTAGTACTTCAAG+CGG | - | chr5_2:56022407-56022426 | Msa0777190:CDS | 40.0% | |
| ! | CCTCCATAGTTGCAAGTTTT+TGG | + | chr5_2:56022451-56022470 | Msa0777180:intron | 40.0% |
| CCAAAAACTTGCAACTATGG+AGG | - | chr5_2:56022448-56022467 | Msa0777190:intron | 40.0% | |
| ! | TGTTGGCTACATTAAAGCGA+AGG | - | chr5_2:56022487-56022506 | Msa0777190:intron | 40.0% |
| TACATTAAAGCGAAGGAAGG+TGG | - | chr5_2:56022494-56022513 | Msa0777190:intron | 40.0% | |
| TTAGCAATGAGGAAGGTTGT+AGG | + | chr5_2:56022630-56022649 | Msa0777180:intron | 40.0% | |
| CTAGTTGCGTAGAATCCAAA+AGG | - | chr5_2:56022668-56022687 | Msa0777190:intron | 40.0% | |
| ! | TTTTTGCAGGCATCAAACGT+AGG | - | chr5_2:56023184-56023203 | Msa0777190:CDS | 40.0% |
| TCATTGTTATGCACAGAGGA+TGG | + | chr5_2:56021634-56021653 | Msa0777180:intron | 40.0% | |
| TCCTCTGTGCATAACAATGA+AGG | - | chr5_2:56021634-56021653 | Msa0777190:CDS | 40.0% | |
| CCTCTGTGCATAACAATGAA+GGG | - | chr5_2:56021635-56021654 | Msa0777190:CDS | 40.0% | |
| CAAAGCCATGACTATGATTC+TGG | - | chr5_2:56021807-56021826 | Msa0777190:intron | 40.0% | |
| ATACAATCATTTGGGCAAGC+AGG | + | chr5_2:56021931-56021950 | Msa0777180:intron | 40.0% | |
| ATGCAAGACATCTAAGTGGA+AGG | - | chr5_2:56021996-56022015 | Msa0777190:intron | 40.0% | |
| AAGTAGCGCAATATCTTTGC+AGG | + | chr5_2:56022039-56022058 | Msa0777180:intron | 40.0% | |
| CATTGGATGGTAACCAAGAT+GGG | - | chr5_2:56022127-56022146 | Msa0777190:intron | 40.0% | |
| TCCAAAAGGGTTAAAGCCAT+CGG | + | chr5_2:56022253-56022272 | Msa0777180:intron | 40.0% | |
| TTCAAACTACAGCATTTGGC+CGG | - | chr5_2:56022281-56022300 | Msa0777190:intron | 40.0% | |
| TTGTATGGGATAAGAACCAC+CGG | + | chr5_2:56022303-56022322 | Msa0777180:intron | 40.0% | |
| TTTCGAGGTAGTACTTCAAG+CGG | - | chr5_2:56022407-56022426 | Msa0777190:CDS | 40.0% | |
| ! | CCTCCATAGTTGCAAGTTTT+TGG | + | chr5_2:56022451-56022470 | Msa0777180:intron | 40.0% |
| CCAAAAACTTGCAACTATGG+AGG | - | chr5_2:56022448-56022467 | Msa0777190:intron | 40.0% | |
| ! | TGTTGGCTACATTAAAGCGA+AGG | - | chr5_2:56022487-56022506 | Msa0777190:intron | 40.0% |
| TACATTAAAGCGAAGGAAGG+TGG | - | chr5_2:56022494-56022513 | Msa0777190:intron | 40.0% | |
| TTAGCAATGAGGAAGGTTGT+AGG | + | chr5_2:56022630-56022649 | Msa0777180:intron | 40.0% | |
| CTAGTTGCGTAGAATCCAAA+AGG | - | chr5_2:56022668-56022687 | Msa0777190:intron | 40.0% | |
| ! | TTTTTGCAGGCATCAAACGT+AGG | - | chr5_2:56023184-56023203 | Msa0777190:CDS | 40.0% |
| TGGAATTGGTCGAAACAACC+TGG | - | chr5_2:56021597-56021616 | Msa0777190:CDS | 45.0% | |
| CCCTTCATTGTTATGCACAG+AGG | + | chr5_2:56021638-56021657 | Msa0777180:intron | 45.0% | |
| !! | CTCTGCAATCTTGGCTTTAG+TGG | + | chr5_2:56022063-56022082 | Msa0777180:intron | 45.0% |
| CACTAAAGCCAAGATTGCAG+AGG | - | chr5_2:56022061-56022080 | Msa0777190:intron | 45.0% | |
| ! | ACTCATAGACTCTGCGGTTT+TGG | + | chr5_2:56022100-56022119 | Msa0777180:intron | 45.0% |
| AAACCGCAGAGTCTATGAGT+TGG | - | chr5_2:56022100-56022119 | Msa0777190:intron | 45.0% | |
| ATGCCAACTCATAGACTCTG+CGG | + | chr5_2:56022106-56022125 | Msa0777180:intron | 45.0% | |
| ! | GTCTATGAGTTGGCATGCAT+TGG | - | chr5_2:56022110-56022129 | Msa0777190:intron | 45.0% |
| ! | ATGAGTTGGCATGCATTGGA+TGG | - | chr5_2:56022114-56022133 | Msa0777190:intron | 45.0% |
| GCATTGGATGGTAACCAAGA+TGG | - | chr5_2:56022126-56022145 | Msa0777190:intron | 45.0% | |
| ATCCTAAAGATTCCGAGGCA+TGG | - | chr5_2:56022160-56022179 | Msa0777190:intron | 45.0% | |
| TTCCATGCCTCGGAATCTTT+AGG | + | chr5_2:56022165-56022184 | Msa0777180:intron | 45.0% | |
| ! | GTCAAACGTTTTCCATGCCT+CGG | + | chr5_2:56022175-56022194 | Msa0777180:intron | 45.0% |
| GATCCTCGAAATGTACGACT+TGG | - | chr5_2:56022219-56022238 | Msa0777190:intron | 45.0% | |
| AAAAGGGTTAAAGCCATCGG+TGG | + | chr5_2:56022250-56022269 | Msa0777180:intron | 45.0% | |
| !!! | ACCGATGGCTTTAACCCTTT+TGG | - | chr5_2:56022249-56022268 | Msa0777190:intron | 45.0% |
| CATACTACCACACGACTTAG+CGG | - | chr5_2:56022368-56022387 | Msa0777190:CDS | 45.0% | |
| !!! | ATGGAGTTTGGCTCTTTTCG+AGG | - | chr5_2:56022392-56022411 | Msa0777190:CDS | 45.0% |
| TGCAACTATGGAGGCTCAAA+TGG | - | chr5_2:56022457-56022476 | Msa0777190:intron | 45.0% | |
| GGCTACATTAAAGCGAAGGA+AGG | - | chr5_2:56022491-56022510 | Msa0777190:intron | 45.0% | |
| AATAAGGCAGCAGCTAACTC+TGG | + | chr5_2:56022530-56022549 | Msa0777180:intron | 45.0% | |
| CTGATCATGTCTGAACGTGA+TGG | + | chr5_2:56022743-56022762 | Msa0777180:intron | 45.0% | |
| !! | TAATGTAGCGCCGGTAATAG+TGG | + | chr5_2:56022889-56022908 | Msa0777180:intron | 45.0% |
| TCCAAAGCTTAATGTAGCGC+CGG | + | chr5_2:56022898-56022917 | Msa0777180:intron | 45.0% | |
| TGGAATTGGTCGAAACAACC+TGG | - | chr5_2:56021597-56021616 | Msa0777190:CDS | 45.0% | |
| CCCTTCATTGTTATGCACAG+AGG | + | chr5_2:56021638-56021657 | Msa0777180:intron | 45.0% | |
| !! | CTCTGCAATCTTGGCTTTAG+TGG | + | chr5_2:56022063-56022082 | Msa0777180:intron | 45.0% |
| CACTAAAGCCAAGATTGCAG+AGG | - | chr5_2:56022061-56022080 | Msa0777190:intron | 45.0% | |
| ! | ACTCATAGACTCTGCGGTTT+TGG | + | chr5_2:56022100-56022119 | Msa0777180:intron | 45.0% |
| AAACCGCAGAGTCTATGAGT+TGG | - | chr5_2:56022100-56022119 | Msa0777190:intron | 45.0% | |
| ATGCCAACTCATAGACTCTG+CGG | + | chr5_2:56022106-56022125 | Msa0777180:intron | 45.0% | |
| ! | GTCTATGAGTTGGCATGCAT+TGG | - | chr5_2:56022110-56022129 | Msa0777190:intron | 45.0% |
| ! | ATGAGTTGGCATGCATTGGA+TGG | - | chr5_2:56022114-56022133 | Msa0777190:intron | 45.0% |
| GCATTGGATGGTAACCAAGA+TGG | - | chr5_2:56022126-56022145 | Msa0777190:intron | 45.0% | |
| ATCCTAAAGATTCCGAGGCA+TGG | - | chr5_2:56022160-56022179 | Msa0777190:intron | 45.0% | |
| TTCCATGCCTCGGAATCTTT+AGG | + | chr5_2:56022165-56022184 | Msa0777180:intron | 45.0% | |
| ! | GTCAAACGTTTTCCATGCCT+CGG | + | chr5_2:56022175-56022194 | Msa0777180:intron | 45.0% |
| GATCCTCGAAATGTACGACT+TGG | - | chr5_2:56022219-56022238 | Msa0777190:intron | 45.0% | |
| AAAAGGGTTAAAGCCATCGG+TGG | + | chr5_2:56022250-56022269 | Msa0777180:intron | 45.0% | |
| !!! | ACCGATGGCTTTAACCCTTT+TGG | - | chr5_2:56022249-56022268 | Msa0777190:intron | 45.0% |
| CATACTACCACACGACTTAG+CGG | - | chr5_2:56022368-56022387 | Msa0777190:CDS | 45.0% | |
| !!! | ATGGAGTTTGGCTCTTTTCG+AGG | - | chr5_2:56022392-56022411 | Msa0777190:CDS | 45.0% |
| TGCAACTATGGAGGCTCAAA+TGG | - | chr5_2:56022457-56022476 | Msa0777190:intron | 45.0% | |
| GGCTACATTAAAGCGAAGGA+AGG | - | chr5_2:56022491-56022510 | Msa0777190:intron | 45.0% | |
| AATAAGGCAGCAGCTAACTC+TGG | + | chr5_2:56022530-56022549 | Msa0777180:intron | 45.0% | |
| CTGATCATGTCTGAACGTGA+TGG | + | chr5_2:56022743-56022762 | Msa0777180:intron | 45.0% | |
| !! | TAATGTAGCGCCGGTAATAG+TGG | + | chr5_2:56022889-56022908 | Msa0777180:intron | 45.0% |
| TCCAAAGCTTAATGTAGCGC+CGG | + | chr5_2:56022898-56022917 | Msa0777180:intron | 45.0% | |
| GCGACATCCTAAAGATTCCG+AGG | - | chr5_2:56022155-56022174 | Msa0777190:intron | 50.0% | |
| CGAGGATCTGCTGCAAATTC+AGG | + | chr5_2:56022207-56022226 | Msa0777180:intron | 50.0% | |
| AGGCCAAGTCGTACATTTCG+AGG | + | chr5_2:56022225-56022244 | Msa0777180:intron | 50.0% | |
| GGTTAAAGCCATCGGTGGAT+AGG | + | chr5_2:56022245-56022264 | Msa0777180:intron | 50.0% | |
| AAACTACAGCATTTGGCCGG+TGG | - | chr5_2:56022284-56022303 | Msa0777190:intron | 50.0% | |
| ACCATTCCCATTCCCATGGA+GGG | + | chr5_2:56022329-56022348 | Msa0777180:intron | 50.0% | |
| AACCATTCCCATTCCCATGG+AGG | + | chr5_2:56022330-56022349 | Msa0777180:intron | 50.0% | |
| AGGAACCATTCCCATTCCCA+TGG | + | chr5_2:56022333-56022352 | Msa0777180:intron | 50.0% | |
| TACCACACGACTTAGCGGTA+TGG | - | chr5_2:56022373-56022392 | Msa0777190:CDS | 50.0% | |
| CGACTTAGCGGTATGGAGTT+TGG | - | chr5_2:56022380-56022399 | Msa0777190:CDS | 50.0% | |
| TTCAAGCGGCAGTTCTGCAT+TGG | - | chr5_2:56022421-56022440 | Msa0777190:intron | 50.0% | |
| GCTCAAATGGCAGCACTTGT+TGG | - | chr5_2:56022470-56022489 | Msa0777190:intron | 50.0% | |
| ACCGGCGCTACATTAAGCTT+TGG | - | chr5_2:56022894-56022913 | Msa0777190:intron | 50.0% | |
| TCAGATGAAAGCAACGCACG+TGG | - | chr5_2:56023244-56023263 | Msa0777190:CDS | 50.0% | |
| GCGACATCCTAAAGATTCCG+AGG | - | chr5_2:56022155-56022174 | Msa0777190:intron | 50.0% | |
| CGAGGATCTGCTGCAAATTC+AGG | + | chr5_2:56022207-56022226 | Msa0777180:intron | 50.0% | |
| AGGCCAAGTCGTACATTTCG+AGG | + | chr5_2:56022225-56022244 | Msa0777180:intron | 50.0% | |
| GGTTAAAGCCATCGGTGGAT+AGG | + | chr5_2:56022245-56022264 | Msa0777180:intron | 50.0% | |
| AAACTACAGCATTTGGCCGG+TGG | - | chr5_2:56022284-56022303 | Msa0777190:intron | 50.0% | |
| ACCATTCCCATTCCCATGGA+GGG | + | chr5_2:56022329-56022348 | Msa0777180:intron | 50.0% | |
| AACCATTCCCATTCCCATGG+AGG | + | chr5_2:56022330-56022349 | Msa0777180:intron | 50.0% | |
| AGGAACCATTCCCATTCCCA+TGG | + | chr5_2:56022333-56022352 | Msa0777180:intron | 50.0% | |
| TACCACACGACTTAGCGGTA+TGG | - | chr5_2:56022373-56022392 | Msa0777190:CDS | 50.0% | |
| CGACTTAGCGGTATGGAGTT+TGG | - | chr5_2:56022380-56022399 | Msa0777190:CDS | 50.0% | |
| TTCAAGCGGCAGTTCTGCAT+TGG | - | chr5_2:56022421-56022440 | Msa0777190:intron | 50.0% | |
| GCTCAAATGGCAGCACTTGT+TGG | - | chr5_2:56022470-56022489 | Msa0777190:intron | 50.0% | |
| ACCGGCGCTACATTAAGCTT+TGG | - | chr5_2:56022894-56022913 | Msa0777190:intron | 50.0% | |
| TCAGATGAAAGCAACGCACG+TGG | - | chr5_2:56023244-56023263 | Msa0777190:CDS | 50.0% | |
| AGGATGGAACAGCATCGTCC+AGG | + | chr5_2:56021618-56021637 | Msa0777180:intron | 55.0% | |
| GATGTCGCATCAGCCCATCT+TGG | + | chr5_2:56022143-56022162 | Msa0777180:intron | 55.0% | |
| TCCCATACAATCGCCCTCCA+TGG | - | chr5_2:56022313-56022332 | Msa0777190:CDS | 55.0% | |
| CCCATGGAGGGCGATTGTAT+GGG | + | chr5_2:56022317-56022336 | Msa0777180:intron | 55.0% | |
| CCCATACAATCGCCCTCCAT+GGG | - | chr5_2:56022314-56022333 | Msa0777190:CDS | 55.0% | |
| TCCCATGGAGGGCGATTGTA+TGG | + | chr5_2:56022318-56022337 | Msa0777180:intron | 55.0% | |
| ACAATCGCCCTCCATGGGAA+TGG | - | chr5_2:56022319-56022338 | Msa0777190:CDS | 55.0% | |
| CAATCGCCCTCCATGGGAAT+GGG | - | chr5_2:56022320-56022339 | Msa0777190:CDS | 55.0% | |
| CTCCATACCGCTAAGTCGTG+TGG | + | chr5_2:56022378-56022397 | Msa0777180:intron | 55.0% | |
| AAGGCAGCAGCTAACTCTGG+AGG | + | chr5_2:56022527-56022546 | Msa0777180:intron | 55.0% | |
| !! | AGCGCCGGTAATAGTGGTAG+TGG | + | chr5_2:56022883-56022902 | Msa0777180:intron | 55.0% |
| AGGATGGAACAGCATCGTCC+AGG | + | chr5_2:56021618-56021637 | Msa0777180:intron | 55.0% | |
| GATGTCGCATCAGCCCATCT+TGG | + | chr5_2:56022143-56022162 | Msa0777180:intron | 55.0% | |
| TCCCATACAATCGCCCTCCA+TGG | - | chr5_2:56022313-56022332 | Msa0777190:CDS | 55.0% | |
| CCCATGGAGGGCGATTGTAT+GGG | + | chr5_2:56022317-56022336 | Msa0777180:intron | 55.0% | |
| CCCATACAATCGCCCTCCAT+GGG | - | chr5_2:56022314-56022333 | Msa0777190:CDS | 55.0% | |
| TCCCATGGAGGGCGATTGTA+TGG | + | chr5_2:56022318-56022337 | Msa0777180:intron | 55.0% | |
| ACAATCGCCCTCCATGGGAA+TGG | - | chr5_2:56022319-56022338 | Msa0777190:CDS | 55.0% | |
| CAATCGCCCTCCATGGGAAT+GGG | - | chr5_2:56022320-56022339 | Msa0777190:CDS | 55.0% | |
| CTCCATACCGCTAAGTCGTG+TGG | + | chr5_2:56022378-56022397 | Msa0777180:intron | 55.0% | |
| AAGGCAGCAGCTAACTCTGG+AGG | + | chr5_2:56022527-56022546 | Msa0777180:intron | 55.0% | |
| !! | AGCGCCGGTAATAGTGGTAG+TGG | + | chr5_2:56022883-56022902 | Msa0777180:intron | 55.0% |
| ! | CGACTTGGCCTATCCACCGA+TGG | - | chr5_2:56022234-56022253 | Msa0777190:intron | 60.0% |
| GCCCTCCATGGGAATGGGAA+TGG | - | chr5_2:56022325-56022344 | Msa0777190:CDS | 60.0% | |
| ! | CGACTTGGCCTATCCACCGA+TGG | - | chr5_2:56022234-56022253 | Msa0777190:intron | 60.0% |
| GCCCTCCATGGGAATGGGAA+TGG | - | chr5_2:56022325-56022344 | Msa0777190:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 56021571 | 56023282 | 56021571 | ID=Msa0777190;Name=Msa0777190 |
| chr5_2 | mRNA | 56021571 | 56023282 | 56021571 | ID=Msa0777190-mRNA-1;Parent=Msa0777190;Name=Msa0777190-mRNA-1;_AED=0.13;_eAED=0.17;_QI=0|0|0|1|0.33|0.25|4|0|199 |
| chr5_2 | exon | 56023088 | 56023282 | 56023088 | ID=Msa0777190-mRNA-1:exon:16581;Parent=Msa0777190-mRNA-1 |
| chr5_2 | exon | 56022903 | 56023066 | 56022903 | ID=Msa0777190-mRNA-1:exon:16580;Parent=Msa0777190-mRNA-1 |
| chr5_2 | exon | 56022285 | 56022435 | 56022285 | ID=Msa0777190-mRNA-1:exon:16579;Parent=Msa0777190-mRNA-1 |
| chr5_2 | exon | 56021571 | 56021660 | 56021571 | ID=Msa0777190-mRNA-1:exon:16578;Parent=Msa0777190-mRNA-1 |
| chr5_2 | CDS | 56023088 | 56023282 | 56023088 | ID=Msa0777190-mRNA-1:cds;Parent=Msa0777190-mRNA-1 |
| chr5_2 | CDS | 56022903 | 56023066 | 56022903 | ID=Msa0777190-mRNA-1:cds;Parent=Msa0777190-mRNA-1 |
| chr5_2 | CDS | 56022285 | 56022435 | 56022285 | ID=Msa0777190-mRNA-1:cds;Parent=Msa0777190-mRNA-1 |
| chr5_2 | CDS | 56021571 | 56021660 | 56021571 | ID=Msa0777190-mRNA-1:cds;Parent=Msa0777190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
