Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777520 | sp|F4KEW8|NET4A_ARATH | 45.695 | 604 | 253 | 12 | 6 | 596 | 6 | 547 | 1.43e-132 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777520 | G7K0U4 | 96.192 | 604 | 23 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0735550 | Msa0777520 | 0.855561 | 5.807828e-62 | -8.615850e-47 |
| Msa0777520 | Msa0855110 | 0.895539 | 8.703460e-76 | -8.615850e-47 |
| Msa0245580 | Msa0777520 | 0.815335 | 9.747055e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777520 | MtrunA17_Chr5g0432781 | 96.192 | 604 | 23 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1186 |
| Msa0777520 | MtrunA17_Chr3g0107891 | 51.536 | 586 | 195 | 11 | 44 | 604 | 15 | 536 | 7.60e-174 | 504 |
| Msa0777520 | MtrunA17_Chr6g0483761 | 31.749 | 526 | 307 | 12 | 112 | 604 | 2 | 508 | 8.91e-52 | 186 |
| Msa0777520 | MtrunA17_Chr1g0204981 | 59.690 | 129 | 40 | 2 | 16 | 134 | 8 | 134 | 2.06e-42 | 164 |
| Msa0777520 | MtrunA17_Chr1g0185241 | 75.862 | 87 | 21 | 0 | 16 | 102 | 10 | 96 | 2.27e-40 | 158 |
| Msa0777520 | MtrunA17_Chr5g0394641 | 75.862 | 87 | 21 | 0 | 16 | 102 | 8 | 94 | 2.00e-39 | 155 |
| Msa0777520 | MtrunA17_Chr7g0260161 | 28.618 | 615 | 298 | 22 | 16 | 513 | 8 | 598 | 1.86e-38 | 152 |
| Msa0777520 | MtrunA17_Chr5g0412211 | 55.556 | 99 | 40 | 2 | 20 | 118 | 9 | 103 | 5.69e-31 | 129 |
| Msa0777520 | MtrunA17_Chr8g0367521 | 44.715 | 123 | 58 | 3 | 20 | 132 | 9 | 131 | 1.10e-28 | 122 |
| Msa0777520 | MtrunA17_Chr3g0128621 | 28.065 | 367 | 235 | 7 | 237 | 593 | 195 | 542 | 2.20e-27 | 116 |
| Msa0777520 | MtrunA17_Chr5g0427501 | 50.505 | 99 | 45 | 1 | 20 | 118 | 9 | 103 | 1.04e-25 | 112 |
| Msa0777520 | MtrunA17_Chr7g0268631 | 64.557 | 79 | 25 | 2 | 22 | 97 | 53 | 131 | 5.97e-25 | 106 |
| Msa0777520 | MtrunA17_Chr1g0196081 | 54.839 | 93 | 41 | 1 | 8 | 100 | 4 | 95 | 3.99e-24 | 106 |
| Msa0777520 | MtrunA17_Chr3g0132861 | 53.333 | 75 | 33 | 1 | 30 | 102 | 14 | 88 | 4.93e-18 | 88.6 |
| Msa0777520 | MtrunA17_Chr8g0350861 | 32.370 | 173 | 110 | 1 | 433 | 598 | 104 | 276 | 9.29e-18 | 84.0 |
| Msa0777520 | MtrunA17_Chr8g0350851 | 30.516 | 213 | 139 | 3 | 392 | 596 | 14 | 225 | 1.33e-15 | 76.6 |
| Msa0777520 | MtrunA17_Chr3g0128591 | 26.032 | 315 | 203 | 6 | 237 | 522 | 69 | 382 | 2.66e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777520 | AT5G58320.5 | 45.695 | 604 | 253 | 12 | 6 | 596 | 6 | 547 | 1.46e-133 | 402 |
| Msa0777520 | AT5G58320.2 | 45.695 | 604 | 253 | 12 | 6 | 596 | 6 | 547 | 1.46e-133 | 402 |
| Msa0777520 | AT2G30500.2 | 43.791 | 612 | 241 | 17 | 1 | 604 | 1 | 517 | 1.16e-124 | 378 |
| Msa0777520 | AT2G30500.1 | 43.791 | 612 | 241 | 17 | 1 | 604 | 1 | 517 | 1.16e-124 | 378 |
| Msa0777520 | AT2G30500.3 | 43.678 | 609 | 240 | 17 | 4 | 604 | 3 | 516 | 5.98e-123 | 373 |
| Msa0777520 | AT5G58320.1 | 50.442 | 452 | 199 | 10 | 6 | 448 | 6 | 441 | 1.93e-120 | 367 |
| Msa0777520 | AT5G58320.4 | 50.442 | 452 | 199 | 10 | 6 | 448 | 6 | 441 | 1.93e-120 | 367 |
| Msa0777520 | AT5G58320.3 | 48.804 | 418 | 181 | 9 | 44 | 448 | 1 | 398 | 7.87e-102 | 316 |
| Msa0777520 | AT1G03080.3 | 74.157 | 89 | 23 | 0 | 19 | 107 | 10 | 98 | 1.83e-39 | 155 |
| Msa0777520 | AT1G03080.1 | 74.157 | 89 | 23 | 0 | 19 | 107 | 10 | 98 | 1.83e-39 | 155 |
| Msa0777520 | AT1G03080.2 | 74.157 | 89 | 23 | 0 | 19 | 107 | 10 | 98 | 1.83e-39 | 155 |
| Msa0777520 | AT3G22790.1 | 75.581 | 86 | 20 | 1 | 16 | 101 | 8 | 92 | 2.70e-37 | 149 |
| Msa0777520 | AT3G22790.3 | 75.581 | 86 | 20 | 1 | 16 | 101 | 8 | 92 | 2.70e-37 | 149 |
| Msa0777520 | AT3G22790.2 | 75.581 | 86 | 20 | 1 | 16 | 101 | 8 | 92 | 2.70e-37 | 149 |
| Msa0777520 | AT4G02710.1 | 68.966 | 87 | 27 | 0 | 17 | 103 | 9 | 95 | 9.02e-37 | 147 |
| Msa0777520 | AT4G14760.4 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.89e-35 | 142 |
| Msa0777520 | AT4G14760.2 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.89e-35 | 142 |
| Msa0777520 | AT4G14760.3 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.89e-35 | 142 |
| Msa0777520 | AT4G14760.1 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.89e-35 | 142 |
| Msa0777520 | AT2G22560.1 | 62.651 | 83 | 31 | 0 | 20 | 102 | 9 | 91 | 1.89e-30 | 127 |
| Msa0777520 | AT5G10500.1 | 43.939 | 132 | 71 | 1 | 12 | 140 | 1 | 132 | 5.76e-29 | 123 |
| Msa0777520 | AT1G09720.1 | 61.446 | 83 | 32 | 0 | 20 | 102 | 9 | 91 | 3.39e-28 | 120 |
| Msa0777520 | AT1G58215.1 | 60.241 | 83 | 33 | 0 | 20 | 102 | 9 | 91 | 4.02e-28 | 120 |
| Msa0777520 | AT1G03470.2 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 7.23e-25 | 104 |
| Msa0777520 | AT1G03470.3 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 7.23e-25 | 104 |
| Msa0777520 | AT1G03470.1 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 7.23e-25 | 104 |
| Msa0777520 | AT1G03470.4 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 7.23e-25 | 104 |
| Msa0777520 | AT2G47920.2 | 56.098 | 82 | 36 | 0 | 16 | 97 | 4 | 85 | 2.56e-24 | 102 |
| Msa0777520 | AT2G47920.1 | 56.098 | 82 | 36 | 0 | 16 | 97 | 4 | 85 | 2.56e-24 | 102 |
| Msa0777520 | AT5G05180.1 | 30.935 | 278 | 149 | 7 | 353 | 595 | 152 | 421 | 2.81e-19 | 91.3 |
| Msa0777520 | AT5G05180.2 | 30.686 | 277 | 127 | 7 | 353 | 595 | 152 | 397 | 3.42e-19 | 90.9 |
| Msa0777520 | AT5G05180.3 | 30.935 | 278 | 149 | 7 | 353 | 595 | 122 | 391 | 5.31e-19 | 90.1 |
| Msa0777520 | AT3G10880.2 | 44.898 | 98 | 53 | 1 | 488 | 584 | 184 | 281 | 5.36e-13 | 70.1 |
| Msa0777520 | AT3G10880.4 | 44.898 | 98 | 53 | 1 | 488 | 584 | 184 | 281 | 5.36e-13 | 70.1 |
| Msa0777520 | AT3G10880.3 | 44.898 | 98 | 53 | 1 | 488 | 584 | 222 | 319 | 5.96e-13 | 70.5 |
| Msa0777520 | AT3G10880.1 | 44.898 | 98 | 53 | 1 | 488 | 584 | 222 | 319 | 5.96e-13 | 70.5 |
| Msa0777520 | AT4G03153.1 | 41.026 | 78 | 41 | 2 | 23 | 95 | 7 | 84 | 6.55e-12 | 65.9 |
Find 190 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGGTTTGATTTCTTTCT+TGG | 0.129859 | 5_2:-56525934 | Msa0777520:CDS |
| CATTATCTTATTGTAAAATT+AGG | 0.158172 | 5_2:-56524164 | Msa0777520:three_prime_UTR |
| GCATAAGAGGGTTCCAATTT+TGG | 0.168910 | 5_2:-56524573 | Msa0777520:CDS |
| TAAAATACCGAGATTGAATT+TGG | 0.169737 | 5_2:-56524303 | Msa0777520:three_prime_UTR |
| CTCTGGAAAATGGCTGCTTC+TGG | 0.173281 | 5_2:-56526811 | Msa0777520:exon |
| TCCAAACACACCTTTCTTTC+AGG | 0.174928 | 5_2:-56527755 | Msa0777520:intron |
| ATCCATATTTCTTGAATCTA+AGG | 0.206718 | 5_2:+56525531 | None:intergenic |
| AAGCAAAATTTATTATATAA+TGG | 0.234836 | 5_2:+56524097 | None:intergenic |
| AATTATTAGGCAGCCAAAAT+TGG | 0.250987 | 5_2:+56524560 | None:intergenic |
| TTGTTCGTATGCATTAATTT+TGG | 0.258097 | 5_2:+56525636 | None:intergenic |
| ATCCTTAGATTCAAGAAATA+TGG | 0.259814 | 5_2:-56525533 | Msa0777520:CDS |
| AAAGAGCCACTTAGAATTCT+TGG | 0.264250 | 5_2:+56526607 | None:intergenic |
| TCAACCAAAGCAACCAATTC+TGG | 0.267721 | 5_2:+56526138 | None:intergenic |
| AGCAAAATTTATTATATAAT+GGG | 0.275609 | 5_2:+56524098 | None:intergenic |
| TCAGCTTGACTCGGCTAAAA+AGG | 0.286993 | 5_2:-56525314 | Msa0777520:CDS |
| TTTGATTTCTTTCTTGGAAC+TGG | 0.294515 | 5_2:-56525928 | Msa0777520:CDS |
| TTAGATTTATACTAATTATT+AGG | 0.298988 | 5_2:+56524547 | None:intergenic |
| TCAACATCCGTTTCACATTC+CGG | 0.333589 | 5_2:+56526223 | None:intergenic |
| GAGGCCAGAATTGGTTGCTT+TGG | 0.335656 | 5_2:-56526142 | Msa0777520:CDS |
| AATCAAGGAAATCACATTCT+TGG | 0.339438 | 5_2:-56526652 | Msa0777520:CDS |
| TCAAAGTTAGAAGCTTGATA+TGG | 0.350146 | 5_2:-56524197 | Msa0777520:three_prime_UTR |
| CATCAGTGGTCGTTTGATCT+TGG | 0.352466 | 5_2:-56524347 | Msa0777520:three_prime_UTR |
| AAATCAAGCAACCGGGCTGC+TGG | 0.367538 | 5_2:-56525952 | Msa0777520:CDS |
| GACTTCAAATTAGCTTTCTC+GGG | 0.368269 | 5_2:+56525136 | None:intergenic |
| AAGGTTAAAGACTAGTTTAT+CGG | 0.368379 | 5_2:-56525221 | Msa0777520:CDS |
| AGACTTCAAATTAGCTTTCT+CGG | 0.376529 | 5_2:+56525135 | None:intergenic |
| TAGAAGCTTGATATGGATAA+AGG | 0.383398 | 5_2:-56524190 | Msa0777520:three_prime_UTR |
| TCTGGAAAATGGCTGCTTCT+GGG | 0.385154 | 5_2:-56526810 | Msa0777520:exon |
| AAGAGAAGCGCGAGGCGATC+AGG | 0.385466 | 5_2:-56524661 | Msa0777520:CDS |
| GTAGCAGCTGCTCTGGAAAA+TGG | 0.385473 | 5_2:-56526821 | Msa0777520:exon |
| ATGGATCTAAGAACAGGAAC+AGG | 0.397778 | 5_2:+56527807 | None:intergenic |
| CAGTGAAGCAACTTGCGTTT+CGG | 0.398464 | 5_2:+56525384 | None:intergenic |
| GATCCTGCATTCACGCATTC+GGG | 0.401170 | 5_2:-56524371 | Msa0777520:three_prime_UTR |
| AGATCCTGCATTCACGCATT+CGG | 0.403230 | 5_2:-56524372 | Msa0777520:three_prime_UTR |
| GATTTACGATGGGTCACGTT+TGG | 0.409430 | 5_2:+56525970 | None:intergenic |
| AATCACTAAAGAAAATCTTA+AGG | 0.409707 | 5_2:-56525410 | Msa0777520:CDS |
| AAGAGCCACTTAGAATTCTT+GGG | 0.412841 | 5_2:+56526608 | None:intergenic |
| TCGCGGAATGGTACTGATCC+AGG | 0.414382 | 5_2:-56525796 | Msa0777520:CDS |
| ACTACAAAGACCTTCCTTCC+CGG | 0.416014 | 5_2:-56527961 | Msa0777520:five_prime_UTR |
| CAACAAGCATAGGACATTAC+AGG | 0.417571 | 5_2:+56524482 | None:intergenic |
| GGCGAAGAAACTCGAGGAAC+AGG | 0.419693 | 5_2:-56524720 | Msa0777520:CDS |
| TTTATTCTTCTGTTCATCCC+TGG | 0.425227 | 5_2:+56525778 | None:intergenic |
| CCCATCGTAAATCAAGCAAC+CGG | 0.428996 | 5_2:-56525960 | Msa0777520:CDS |
| TTACAAGAAGAGGCCAGAAT+TGG | 0.431957 | 5_2:-56526151 | Msa0777520:CDS |
| ACCTGAAAGAAAGGTGTGTT+TGG | 0.435570 | 5_2:+56527754 | None:intergenic |
| GGAGAGATTTGAGGAGAGAG+AGG | 0.436086 | 5_2:+56527829 | None:intergenic |
| CCATGTGTAATTCGTTCAAA+TGG | 0.438638 | 5_2:+56524807 | None:intergenic |
| AGGTTTCAGTTTCATCTAGT+GGG | 0.439800 | 5_2:-56525690 | Msa0777520:CDS |
| GAGGTAGGTAGCAGCTGCTC+TGG | 0.439969 | 5_2:-56526828 | Msa0777520:five_prime_UTR |
| GTCTGAAATGTCAAAGTTGT+TGG | 0.441122 | 5_2:-56525116 | Msa0777520:CDS |
| GGATACTTGTATTATTATGT+AGG | 0.441250 | 5_2:+56527911 | None:intergenic |
| GAGGAGAGAGAGGTTTGGCT+TGG | 0.441700 | 5_2:+56527839 | None:intergenic |
| TGTCAATATCAGAGGGTTTG+AGG | 0.443115 | 5_2:-56526850 | Msa0777520:intron |
| AAGCATCGATGGTGTGGATA+AGG | 0.448894 | 5_2:-56525482 | Msa0777520:CDS |
| GAGGTTTCAGTTTCATCTAG+TGG | 0.450219 | 5_2:-56525691 | Msa0777520:CDS |
| AACTCAAGAGACGGTAGGAT+TGG | 0.454679 | 5_2:-56524842 | Msa0777520:CDS |
| GATTTCTTTCTTGGAACTGG+TGG | 0.455413 | 5_2:-56525925 | Msa0777520:CDS |
| TGGCTCTTTGAAAATCTTGA+AGG | 0.456114 | 5_2:-56526593 | Msa0777520:intron |
| AAATGAAGAGGTTGGAATCA+AGG | 0.459735 | 5_2:-56526667 | Msa0777520:CDS |
| TGAAGAAAAGGAGTTATGCT+TGG | 0.464990 | 5_2:-56524070 | Msa0777520:three_prime_UTR |
| CCCGGTTGCTTGATTTACGA+TGG | 0.468876 | 5_2:+56525959 | None:intergenic |
| TCATAGATTCCCCGCATTCA+CGG | 0.472121 | 5_2:+56524254 | None:intergenic |
| GATTTGAGGAGAGAGAGGTT+TGG | 0.473241 | 5_2:+56527834 | None:intergenic |
| GAAGAAAAGGAGTTATGCTT+GGG | 0.473967 | 5_2:-56524069 | Msa0777520:three_prime_UTR |
| CTACCGTGGTTACCGATCAT+TGG | 0.475144 | 5_2:-56526109 | Msa0777520:CDS |
| CTTGTATTATTATGTAGGGT+GGG | 0.478489 | 5_2:+56527916 | None:intergenic |
| TATGGATGTTGGTGTTGAGT+TGG | 0.479532 | 5_2:-56525515 | Msa0777520:CDS |
| ATTTCTTTCTTGGAACTGGT+GGG | 0.483275 | 5_2:-56525924 | Msa0777520:CDS |
| TTTGGAGAGGGCAAAGTTGA+GGG | 0.486062 | 5_2:+56525988 | None:intergenic |
| AGTTTAGTTACCTGAAAGAA+AGG | 0.487239 | 5_2:+56527745 | None:intergenic |
| GGAAATCACATTCTTGGTGG+TGG | 0.489138 | 5_2:-56526646 | Msa0777520:CDS |
| CGGACCGGGATCATGAGATC+AGG | 0.489204 | 5_2:-56525201 | Msa0777520:CDS |
| GATAATCTTAATGTAGAAGT+AGG | 0.496198 | 5_2:-56524884 | Msa0777520:CDS |
| ACTTGTATTATTATGTAGGG+TGG | 0.497089 | 5_2:+56527915 | None:intergenic |
| TAAGCAATGGATCTAAGAAC+AGG | 0.498793 | 5_2:+56527801 | None:intergenic |
| GGTTTGGCTTGGTTTGTATG+TGG | 0.501642 | 5_2:+56527850 | None:intergenic |
| AGTGAGGCTGTGTCACCACT+TGG | 0.504390 | 5_2:+56525448 | None:intergenic |
| ACTGAGAGAGAACAGCATAA+AGG | 0.506875 | 5_2:-56524945 | Msa0777520:CDS |
| CAGGAACAGGGAGAGATTTG+AGG | 0.507227 | 5_2:+56527820 | None:intergenic |
| TATGTAGGGTGGGGACATAT+AGG | 0.507990 | 5_2:+56527926 | None:intergenic |
| CTTTAACCTCAGAGATGGAC+CGG | 0.508828 | 5_2:-56526242 | Msa0777520:intron |
| CAGAAATGTATTACAAGAAG+AGG | 0.510966 | 5_2:-56526161 | Msa0777520:CDS |
| AGTGGTGACACAGCCTCACT+TGG | 0.511633 | 5_2:-56525445 | Msa0777520:CDS |
| TGTCCCGACTCCGTGAATGC+GGG | 0.512081 | 5_2:-56524264 | Msa0777520:three_prime_UTR |
| TTCCCCGCATTCACGGAGTC+GGG | 0.513282 | 5_2:+56524261 | None:intergenic |
| TGAAAGAGCTGATCAGAGAG+TGG | 0.513671 | 5_2:-56525078 | Msa0777520:CDS |
| AGGACTGCATATTGATGTAA+AGG | 0.514347 | 5_2:-56524144 | Msa0777520:three_prime_UTR |
| CCATTTGAACGAATTACACA+TGG | 0.514635 | 5_2:-56524807 | Msa0777520:CDS |
| GAACGTTACGATCATGTGAC+TGG | 0.515279 | 5_2:-56526084 | Msa0777520:CDS |
| TGATCTCCAATCCCAAGGCT+CGG | 0.516253 | 5_2:-56526037 | Msa0777520:CDS |
| TAAAGACTAGTTTATCGGAC+CGG | 0.517594 | 5_2:-56525216 | Msa0777520:CDS |
| GATCTCCAATCCCAAGGCTC+GGG | 0.520448 | 5_2:-56526036 | Msa0777520:CDS |
| AGATAGAATTCAGCAGCTGC+AGG | 0.520939 | 5_2:-56525338 | Msa0777520:CDS |
| CGATGGGTCACGTTTGGAGA+GGG | 0.521590 | 5_2:+56525976 | None:intergenic |
| CTGGAAAATGGCTGCTTCTG+GGG | 0.522334 | 5_2:-56526809 | Msa0777520:intron |
| CGTAACGTTCGGCCAATGAT+CGG | 0.523697 | 5_2:+56526097 | None:intergenic |
| CCGGTTGCTTGATTTACGAT+GGG | 0.528312 | 5_2:+56525960 | None:intergenic |
| AATGCAGGATCTATCACAGC+AGG | 0.528583 | 5_2:+56524383 | None:intergenic |
| TAGCAAGCAAATGAAGAGGT+TGG | 0.529450 | 5_2:-56526675 | Msa0777520:CDS |
| TATTCAGCTTTCTCGCGGAA+TGG | 0.530197 | 5_2:-56525808 | Msa0777520:CDS |
| GATACTTGTATTATTATGTA+GGG | 0.531861 | 5_2:+56527912 | None:intergenic |
| GAACAGAAGAATAAACGAGT+TGG | 0.532601 | 5_2:-56525770 | Msa0777520:CDS |
| GATTCAAGAAATATGGATGT+TGG | 0.539714 | 5_2:-56525526 | Msa0777520:CDS |
| ATATAGGAAAAGAAAGTGGC+CGG | 0.540204 | 5_2:+56527942 | None:intergenic |
| AATCAAGCAACCGGGCTGCT+GGG | 0.542696 | 5_2:-56525951 | Msa0777520:CDS |
| AGTAGGTTCACTCAAGGAAG+AGG | 0.544799 | 5_2:-56524867 | Msa0777520:CDS |
| CTCTACTATGACGGGTTCCG+AGG | 0.544882 | 5_2:-56525860 | Msa0777520:CDS |
| AAGAAAGTGGCCGGGAAGGA+AGG | 0.545466 | 5_2:+56527951 | None:intergenic |
| GTTTGGAGAGGGCAAAGTTG+AGG | 0.545858 | 5_2:+56525987 | None:intergenic |
| CTGTCCCGACTCCGTGAATG+CGG | 0.553235 | 5_2:-56524265 | Msa0777520:three_prime_UTR |
| GGTGTTGAGTTGGAAGTTGA+AGG | 0.555150 | 5_2:-56525505 | Msa0777520:CDS |
| AAAAGGAGTTATGCTTGGGT+TGG | 0.556606 | 5_2:-56524065 | Msa0777520:three_prime_UTR |
| CAAGGAAATCACATTCTTGG+TGG | 0.558813 | 5_2:-56526649 | Msa0777520:CDS |
| TGTACAACTGATTTCTGCAA+TGG | 0.559967 | 5_2:-56524780 | Msa0777520:CDS |
| GTGGTGACACAGCCTCACTT+GGG | 0.561345 | 5_2:-56525444 | Msa0777520:CDS |
| AGATGGACCGGAATGTGAAA+CGG | 0.562058 | 5_2:-56526230 | Msa0777520:CDS |
| AGTCACATGATCGTAACGTT+CGG | 0.563685 | 5_2:+56526086 | None:intergenic |
| TTTCTGCTCAGCATCAGATA+CGG | 0.563946 | 5_2:+56525165 | None:intergenic |
| GATGAGTCCTCTACTATGAC+GGG | 0.566905 | 5_2:-56525868 | Msa0777520:CDS |
| AAAGACTAGTTTATCGGACC+GGG | 0.567985 | 5_2:-56525215 | Msa0777520:CDS |
| AGAAATCAAACCCAGCAGCC+CGG | 0.570169 | 5_2:+56525941 | None:intergenic |
| TTGTATTATTATGTAGGGTG+GGG | 0.570369 | 5_2:+56527917 | None:intergenic |
| ACGAAGTCCAAATTCAATCT+CGG | 0.573725 | 5_2:+56524296 | None:intergenic |
| AGTCCCTGATCTCATGATCC+CGG | 0.574038 | 5_2:+56525197 | None:intergenic |
| CGCGGAATGGTACTGATCCA+GGG | 0.575403 | 5_2:-56525795 | Msa0777520:CDS |
| GAAATCACATTCTTGGTGGT+GGG | 0.575639 | 5_2:-56526645 | Msa0777520:CDS |
| GAAAGAGCTGATCAGAGAGT+GGG | 0.576449 | 5_2:-56525077 | Msa0777520:CDS |
| ACTAGTGTGGAATTTAAAAG+TGG | 0.576824 | 5_2:-56524232 | Msa0777520:three_prime_UTR |
| ATTCCCCGCATTCACGGAGT+CGG | 0.577537 | 5_2:+56524260 | None:intergenic |
| GAAGTTGAAGGAAGCATCGA+TGG | 0.578625 | 5_2:-56525493 | Msa0777520:CDS |
| GGATGAATCTGATGATTCAT+CGG | 0.580721 | 5_2:-56525839 | Msa0777520:CDS |
| TGTTGTTATAATCTGAGTCA+AGG | 0.587678 | 5_2:-56524464 | Msa0777520:three_prime_UTR |
| ATTCTAGCAAGCAAATGAAG+AGG | 0.587841 | 5_2:-56526679 | Msa0777520:CDS |
| TCAATCCGAAAAGATAGAGA+TGG | 0.588371 | 5_2:-56525014 | Msa0777520:CDS |
| GAAGCTGAGAGGTTAAGCAA+TGG | 0.588507 | 5_2:+56527788 | None:intergenic |
| TGAAGGAAGCATCGATGGTG+TGG | 0.589058 | 5_2:-56525488 | Msa0777520:CDS |
| GTCCCGACTCCGTGAATGCG+GGG | 0.589862 | 5_2:-56524263 | Msa0777520:three_prime_UTR |
| AGATGAGTCCTCTACTATGA+CGG | 0.591582 | 5_2:-56525869 | Msa0777520:CDS |
| CTCGGAACCCGTCATAGTAG+AGG | 0.596535 | 5_2:+56525861 | None:intergenic |
| GGAAAAGAAAGTGGCCGGGA+AGG | 0.599999 | 5_2:+56527947 | None:intergenic |
| CAGATTATAACAACAAGCAT+AGG | 0.602359 | 5_2:+56524472 | None:intergenic |
| ACTGCATATTGATGTAAAGG+AGG | 0.602626 | 5_2:-56524141 | Msa0777520:three_prime_UTR |
| AACTCGAGGAACAGGTGGAG+AGG | 0.604467 | 5_2:-56524712 | Msa0777520:CDS |
| AAATTAAAACCATTAAAACA+TGG | 0.605923 | 5_2:+56524418 | None:intergenic |
| CGGGGAATCTATGACTAGTG+TGG | 0.606271 | 5_2:-56524245 | Msa0777520:three_prime_UTR |
| ACAATTATTCAGCTTTCTCG+CGG | 0.609429 | 5_2:-56525813 | Msa0777520:CDS |
| TCGAAGCTCCTCCCCAAGTG+AGG | 0.614697 | 5_2:+56525432 | None:intergenic |
| ACGATGGGTCACGTTTGGAG+AGG | 0.616774 | 5_2:+56525975 | None:intergenic |
| GGTTTCAGTTTCATCTAGTG+GGG | 0.617920 | 5_2:-56525689 | Msa0777520:CDS |
| CCATCGTAAATCAAGCAACC+GGG | 0.618032 | 5_2:-56525959 | Msa0777520:CDS |
| TAATGGGAGACAAAGAGTAG+TGG | 0.618477 | 5_2:+56524114 | None:intergenic |
| CAATCTGATCTCCAATCCCA+AGG | 0.619499 | 5_2:-56526042 | Msa0777520:CDS |
| AGCAGCTGAAGAGAAGCGCG+AGG | 0.621012 | 5_2:-56524669 | Msa0777520:CDS |
| CTGCATATTGATGTAAAGGA+GGG | 0.621372 | 5_2:-56524140 | Msa0777520:three_prime_UTR |
| TGTAGAAGTAGGTTCACTCA+AGG | 0.622038 | 5_2:-56524873 | Msa0777520:CDS |
| TATAGGAAAAGAAAGTGGCC+GGG | 0.623100 | 5_2:+56527943 | None:intergenic |
| TGAATCATCAGATTCATCCT+CGG | 0.623472 | 5_2:+56525843 | None:intergenic |
| GGACCGGGATCATGAGATCA+GGG | 0.626205 | 5_2:-56525200 | Msa0777520:CDS |
| ATCCGAAAAGATAGAGATGG+AGG | 0.629419 | 5_2:-56525011 | Msa0777520:CDS |
| GATGTTGAAGCTGATAGAAG+AGG | 0.631830 | 5_2:-56526208 | Msa0777520:CDS |
| ATCAGAGGGTTTGAGGAGGT+AGG | 0.636621 | 5_2:-56526843 | Msa0777520:intron |
| TGTCCCGAATGCGTGAATGC+AGG | 0.637659 | 5_2:+56524368 | None:intergenic |
| CAGCTGCTGAATTCTATCTG+AGG | 0.637838 | 5_2:+56525342 | None:intergenic |
| TCAGTCCCAAGAATTCTAAG+TGG | 0.638403 | 5_2:-56526613 | Msa0777520:CDS |
| AGGTGAACTCAAGAGACGGT+AGG | 0.638743 | 5_2:-56524847 | Msa0777520:CDS |
| ATGAAGTAGAAGAAGCTGAG+AGG | 0.643755 | 5_2:+56527777 | None:intergenic |
| TTGGTTGAAGAGTTCTACCG+TGG | 0.644157 | 5_2:-56526123 | Msa0777520:CDS |
| TGACACAGCCTCACTTGGGG+AGG | 0.645310 | 5_2:-56525440 | Msa0777520:CDS |
| AGTAGAAGAGATGAAAACAA+AGG | 0.648447 | 5_2:-56524741 | Msa0777520:CDS |
| GAAGAGGTGAACTCAAGAGA+CGG | 0.656685 | 5_2:-56524851 | Msa0777520:CDS |
| GAAGAAACTCGAGGAACAGG+TGG | 0.656748 | 5_2:-56524717 | Msa0777520:CDS |
| TCACGCATTCGGGACATCAG+TGG | 0.658930 | 5_2:-56524361 | Msa0777520:three_prime_UTR |
| ATCAGAGAGTGGGAAAGCCG+CGG | 0.659031 | 5_2:-56525067 | Msa0777520:CDS |
| TGGTGACACAGCCTCACTTG+GGG | 0.660841 | 5_2:-56525443 | Msa0777520:CDS |
| ACAGGAAGGTGAACATGCAG+AGG | 0.661050 | 5_2:-56525710 | Msa0777520:CDS |
| GGACATATAGGAAAAGAAAG+TGG | 0.663239 | 5_2:+56527938 | None:intergenic |
| AACTTCAAGAAAGACTTGCA+AGG | 0.664304 | 5_2:-56525240 | Msa0777520:CDS |
| GCTGCAGGATCAGCTTGACT+CGG | 0.679769 | 5_2:-56525323 | Msa0777520:CDS |
| GGAGAGGGCAAAGTTGAGGG+CGG | 0.681487 | 5_2:+56525991 | None:intergenic |
| AAGGAATTGTTCGAGCCAAG+TGG | 0.683149 | 5_2:-56525463 | Msa0777520:CDS |
| ACTTCAAATTAGCTTTCTCG+GGG | 0.683797 | 5_2:+56525137 | None:intergenic |
| AGTTGCTTCACTGAAAATCG+AGG | 0.684914 | 5_2:-56525374 | Msa0777520:CDS |
| GTTGGAAAATGAACTGCGCG+AGG | 0.688241 | 5_2:-56525752 | Msa0777520:CDS |
| CAATATCAGAGGGTTTGAGG+AGG | 0.689373 | 5_2:-56526847 | Msa0777520:intron |
| ATCATGTGACTGGAGAATTG+CGG | 0.692757 | 5_2:-56526074 | Msa0777520:CDS |
| TGGATCTAAGAACAGGAACA+GGG | 0.696384 | 5_2:+56527808 | None:intergenic |
| ATGCAGGATCTATCACAGCA+GGG | 0.704762 | 5_2:+56524384 | None:intergenic |
| AACAAAGGCGAAGAAACTCG+AGG | 0.715395 | 5_2:-56524726 | Msa0777520:CDS |
| GCTCTTCAAATGATCGACCG+CGG | 0.720469 | 5_2:+56525050 | None:intergenic |
| CGGCCAATGATCGGTAACCA+CGG | 0.730068 | 5_2:+56526106 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAAGTGATT+TGG | + | chr5_2:56524309-56524328 | None:intergenic | 10.0% |
| !! | ATAGAATGTTAATTATATTT+AGG | - | chr5_2:56525729-56525748 | Msa0777520:CDS | 10.0% |
| !! | TTAGATTTATACTAATTATT+AGG | + | chr5_2:56527471-56527490 | None:intergenic | 10.0% |
| !!! | TTAAATTATATTGCATTTTT+TGG | + | chr5_2:56527695-56527714 | None:intergenic | 10.0% |
| !! | AGCAAAATTTATTATATAAT+GGG | + | chr5_2:56527920-56527939 | None:intergenic | 10.0% |
| !! | AAGCAAAATTTATTATATAA+TGG | + | chr5_2:56527921-56527940 | None:intergenic | 10.0% |
| !! | AAAACAAATTATGATATTTG+TGG | + | chr5_2:56524554-56524573 | None:intergenic | 15.0% |
| !!! | TAAAGATAATTTTGTCAAAA+CGG | + | chr5_2:56525758-56525777 | None:intergenic | 15.0% |
| !! | AAATTAAAACCATTAAAACA+TGG | + | chr5_2:56527600-56527619 | None:intergenic | 15.0% |
| !!! | TAATGGTTTTAATTTGAATT+CGG | - | chr5_2:56527605-56527624 | Msa0777520:intron | 15.0% |
| !! | CATTATCTTATTGTAAAATT+AGG | - | chr5_2:56527851-56527870 | Msa0777520:five_prime_UTR | 15.0% |
| !! | GATACTTGTATTATTATGTA+GGG | + | chr5_2:56524106-56524125 | None:intergenic | 20.0% |
| !! | AAAAATATGAAGATGTTGAA+GGG | + | chr5_2:56524128-56524147 | None:intergenic | 20.0% |
| !! | TAAAAATATGAAGATGTTGA+AGG | + | chr5_2:56524129-56524148 | None:intergenic | 20.0% |
| !! | AAATAAATGTTACATCAATG+TGG | + | chr5_2:56525071-56525090 | None:intergenic | 20.0% |
| !! | TTTATTATTGTCAATATCAG+AGG | - | chr5_2:56525157-56525176 | Msa0777520:CDS | 20.0% |
| !! | TTATTATTGTCAATATCAGA+GGG | - | chr5_2:56525158-56525177 | Msa0777520:CDS | 20.0% |
| !!! | AATTAACTTGCACATAATAA+TGG | - | chr5_2:56525288-56525307 | Msa0777520:CDS | 20.0% |
| !!! | CTACTTTAAAACTTTTTTGT+TGG | - | chr5_2:56525703-56525722 | Msa0777520:CDS | 20.0% |
| !! | AATCACTAAAGAAAATCTTA+AGG | - | chr5_2:56526605-56526624 | Msa0777520:CDS | 20.0% |
| ! | GGATACTTGTATTATTATGT+AGG | + | chr5_2:56524107-56524126 | None:intergenic | 25.0% |
| !! | ATACAAAAACAGCTGAATTT+TGG | + | chr5_2:56524333-56524352 | None:intergenic | 25.0% |
| ! | AAATGAAATTCCTTGTCATA+TGG | - | chr5_2:56524416-56524435 | Msa0777520:three_prime_UTR | 25.0% |
| !! | ATTATCTTTGAGAAACAACT+GGG | + | chr5_2:56524768-56524787 | None:intergenic | 25.0% |
| !! | TATTATCTTTGAGAAACAAC+TGG | + | chr5_2:56524769-56524788 | None:intergenic | 25.0% |
| !! | TTGTCTAAGTCTTTTCATTT+TGG | - | chr5_2:56525007-56525026 | Msa0777520:CDS | 25.0% |
| !! | TGTCTAAGTCTTTTCATTTT+GGG | - | chr5_2:56525008-56525027 | Msa0777520:CDS | 25.0% |
| ! | GACAATAATAAACACAAAAC+AGG | + | chr5_2:56525149-56525168 | None:intergenic | 25.0% |
| !!! | GTTGGTTATTTTGTTATCTT+AGG | - | chr5_2:56525310-56525329 | Msa0777520:CDS | 25.0% |
| !!! | AAACTCTTTAACTTGTATGT+CGG | - | chr5_2:56525635-56525654 | Msa0777520:CDS | 25.0% |
| !!! | GTAATACATTTCTGCTTTTT+TGG | + | chr5_2:56525848-56525867 | None:intergenic | 25.0% |
| !! | TTGTTCGTATGCATTAATTT+TGG | + | chr5_2:56526382-56526401 | None:intergenic | 25.0% |
| ! | ATCCTTAGATTCAAGAAATA+TGG | - | chr5_2:56526482-56526501 | Msa0777520:intron | 25.0% |
| ! | ATCCATATTTCTTGAATCTA+AGG | + | chr5_2:56526487-56526506 | None:intergenic | 25.0% |
| !!! | AAGGTTAAAGACTAGTTTAT+CGG | - | chr5_2:56526794-56526813 | Msa0777520:intron | 25.0% |
| !!! | TCTCTAGTTTTAAGTTATCA+AGG | + | chr5_2:56527109-56527128 | None:intergenic | 25.0% |
| ! | GATAATCTTAATGTAGAAGT+AGG | - | chr5_2:56527131-56527150 | Msa0777520:intron | 25.0% |
| !! | ATGCTTAAGCAACATTTTAT+AGG | - | chr5_2:56527419-56527438 | Msa0777520:intron | 25.0% |
| !! | TGCTTAAGCAACATTTTATA+GGG | - | chr5_2:56527420-56527439 | Msa0777520:intron | 25.0% |
| !!! | AAGTGATAACCATGTTTTAA+TGG | - | chr5_2:56527588-56527607 | Msa0777520:intron | 25.0% |
| ! | TAAAATACCGAGATTGAATT+TGG | - | chr5_2:56527712-56527731 | Msa0777520:intron | 25.0% |
| !! | TTTTGCTTTCTATGAAGAAA+AGG | - | chr5_2:56527933-56527952 | Msa0777520:five_prime_UTR | 25.0% |
| TTGTATTATTATGTAGGGTG+GGG | + | chr5_2:56524101-56524120 | None:intergenic | 30.0% | |
| CTTGTATTATTATGTAGGGT+GGG | + | chr5_2:56524102-56524121 | None:intergenic | 30.0% | |
| ACTTGTATTATTATGTAGGG+TGG | + | chr5_2:56524103-56524122 | None:intergenic | 30.0% | |
| AGTTTAGTTACCTGAAAGAA+AGG | + | chr5_2:56524273-56524292 | None:intergenic | 30.0% | |
| AAGATAAGAACCATATGACA+AGG | + | chr5_2:56524429-56524448 | None:intergenic | 30.0% | |
| TTTGTCGAAAAATCCAAAAC+TGG | + | chr5_2:56524485-56524504 | None:intergenic | 30.0% | |
| AACTTGCACATAATAATGGT+TGG | - | chr5_2:56525292-56525311 | Msa0777520:CDS | 30.0% | |
| AATCAAGGAAATCACATTCT+TGG | - | chr5_2:56525363-56525382 | Msa0777520:CDS | 30.0% | |
| TATTACTTTATTCGCCTTCT+TGG | - | chr5_2:56525590-56525609 | Msa0777520:CDS | 30.0% | |
| ATTACTTTATTCGCCTTCTT+GGG | - | chr5_2:56525591-56525610 | Msa0777520:CDS | 30.0% | |
| !! | TTAACTTGTATGTCGGTAAT+TGG | - | chr5_2:56525642-56525661 | Msa0777520:CDS | 30.0% |
| ATTATCTTTAACCTCAGAGA+TGG | - | chr5_2:56525768-56525787 | Msa0777520:CDS | 30.0% | |
| CAGAAATGTATTACAAGAAG+AGG | - | chr5_2:56525854-56525873 | Msa0777520:CDS | 30.0% | |
| ! | TTTGATTTCTTTCTTGGAAC+TGG | - | chr5_2:56526087-56526106 | Msa0777520:CDS | 30.0% |
| TCTGATATAAGCCAAAAAGA+CGG | - | chr5_2:56526120-56526139 | Msa0777520:CDS | 30.0% | |
| AAAAGAAAAACTTTGGACAC+AGG | - | chr5_2:56526287-56526306 | Msa0777520:intron | 30.0% | |
| !! | AATTTTGGCATAAACATCGT+CGG | + | chr5_2:56526367-56526386 | None:intergenic | 30.0% |
| GATTCAAGAAATATGGATGT+TGG | - | chr5_2:56526489-56526508 | Msa0777520:intron | 30.0% | |
| !! | AGACTTCAAATTAGCTTTCT+CGG | + | chr5_2:56526883-56526902 | None:intergenic | 30.0% |
| AGTAGAAGAGATGAAAACAA+AGG | - | chr5_2:56527274-56527293 | Msa0777520:intron | 30.0% | |
| ! | AACATTTTATAGGGCATAAG+AGG | - | chr5_2:56527429-56527448 | Msa0777520:intron | 30.0% |
| ! | ACATTTTATAGGGCATAAGA+GGG | - | chr5_2:56527430-56527449 | Msa0777520:intron | 30.0% |
| AATTATTAGGCAGCCAAAAT+TGG | + | chr5_2:56527458-56527477 | None:intergenic | 30.0% | |
| CAGATTATAACAACAAGCAT+AGG | + | chr5_2:56527546-56527565 | None:intergenic | 30.0% | |
| TGTTGTTATAATCTGAGTCA+AGG | - | chr5_2:56527551-56527570 | Msa0777520:intron | 30.0% | |
| ACTAGTGTGGAATTTAAAAG+TGG | - | chr5_2:56527783-56527802 | Msa0777520:five_prime_UTR | 30.0% | |
| TCAAAGTTAGAAGCTTGATA+TGG | - | chr5_2:56527818-56527837 | Msa0777520:five_prime_UTR | 30.0% | |
| TAGAAGCTTGATATGGATAA+AGG | - | chr5_2:56527825-56527844 | Msa0777520:five_prime_UTR | 30.0% | |
| ATATAGGAAAAGAAAGTGGC+CGG | + | chr5_2:56524076-56524095 | None:intergenic | 35.0% | |
| GGACATATAGGAAAAGAAAG+TGG | + | chr5_2:56524080-56524099 | None:intergenic | 35.0% | |
| TAAGCAATGGATCTAAGAAC+AGG | + | chr5_2:56524217-56524236 | None:intergenic | 35.0% | |
| ! | TCCTAAGAAAACACCAGTTT+TGG | - | chr5_2:56524469-56524488 | Msa0777520:three_prime_UTR | 35.0% |
| ! | TCCAAAACTGGTGTTTTCTT+AGG | + | chr5_2:56524473-56524492 | None:intergenic | 35.0% |
| !!! | TTTCAACGCACTCTCTTTTT+TGG | - | chr5_2:56524840-56524859 | Msa0777520:CDS | 35.0% |
| ATTCTAGCAAGCAAATGAAG+AGG | - | chr5_2:56525336-56525355 | Msa0777520:CDS | 35.0% | |
| AAATGAAGAGGTTGGAATCA+AGG | - | chr5_2:56525348-56525367 | Msa0777520:CDS | 35.0% | |
| AAGAGCCACTTAGAATTCTT+GGG | + | chr5_2:56525410-56525429 | None:intergenic | 35.0% | |
| AAAGAGCCACTTAGAATTCT+TGG | + | chr5_2:56525411-56525430 | None:intergenic | 35.0% | |
| ! | TGGCTCTTTGAAAATCTTGA+AGG | - | chr5_2:56525422-56525441 | Msa0777520:CDS | 35.0% |
| TTACTTTATTCGCCTTCTTG+GGG | - | chr5_2:56525592-56525611 | Msa0777520:CDS | 35.0% | |
| GCAATGGAGTTTCATAATTC+TGG | - | chr5_2:56525664-56525683 | Msa0777520:CDS | 35.0% | |
| ATTTCTTTCTTGGAACTGGT+GGG | - | chr5_2:56526091-56526110 | Msa0777520:CDS | 35.0% | |
| TGAATCATCAGATTCATCCT+CGG | + | chr5_2:56526175-56526194 | None:intergenic | 35.0% | |
| GGATGAATCTGATGATTCAT+CGG | - | chr5_2:56526176-56526195 | Msa0777520:CDS | 35.0% | |
| ACAATTATTCAGCTTTCTCG+CGG | - | chr5_2:56526202-56526221 | Msa0777520:CDS | 35.0% | |
| TTTATTCTTCTGTTCATCCC+TGG | + | chr5_2:56526240-56526259 | None:intergenic | 35.0% | |
| GAACAGAAGAATAAACGAGT+TGG | - | chr5_2:56526245-56526264 | Msa0777520:intron | 35.0% | |
| GCGAGGTAAAAGAAAAACTT+TGG | - | chr5_2:56526280-56526299 | Msa0777520:intron | 35.0% | |
| AGGTTTCAGTTTCATCTAGT+GGG | - | chr5_2:56526325-56526344 | Msa0777520:intron | 35.0% | |
| CTAAAAAGGATGTTGCTACT+TGG | - | chr5_2:56526715-56526734 | Msa0777520:intron | 35.0% | |
| ! | TCTTTTCTCGCTGTTGAATT+TGG | + | chr5_2:56526745-56526764 | None:intergenic | 35.0% |
| AACTTCAAGAAAGACTTGCA+AGG | - | chr5_2:56526775-56526794 | Msa0777520:intron | 35.0% | |
| !! | TAAAGACTAGTTTATCGGAC+CGG | - | chr5_2:56526799-56526818 | Msa0777520:intron | 35.0% |
| !! | ACTTCAAATTAGCTTTCTCG+GGG | + | chr5_2:56526881-56526900 | None:intergenic | 35.0% |
| !! | GACTTCAAATTAGCTTTCTC+GGG | + | chr5_2:56526882-56526901 | None:intergenic | 35.0% |
| ! | GTCTGAAATGTCAAAGTTGT+TGG | - | chr5_2:56526899-56526918 | Msa0777520:intron | 35.0% |
| TCAATCCGAAAAGATAGAGA+TGG | - | chr5_2:56527001-56527020 | Msa0777520:intron | 35.0% | |
| ATGGAGGCAGAATTGAAAAA+TGG | - | chr5_2:56527020-56527039 | Msa0777520:intron | 35.0% | |
| CCATGTGTAATTCGTTCAAA+TGG | + | chr5_2:56527211-56527230 | None:intergenic | 35.0% | |
| CCATTTGAACGAATTACACA+TGG | - | chr5_2:56527208-56527227 | Msa0777520:intron | 35.0% | |
| ! | TGTACAACTGATTTCTGCAA+TGG | - | chr5_2:56527235-56527254 | Msa0777520:intron | 35.0% |
| ACGAAGTCCAAATTCAATCT+CGG | + | chr5_2:56527722-56527741 | None:intergenic | 35.0% | |
| AGGACTGCATATTGATGTAA+AGG | - | chr5_2:56527871-56527890 | Msa0777520:five_prime_UTR | 35.0% | |
| ACTGCATATTGATGTAAAGG+AGG | - | chr5_2:56527874-56527893 | Msa0777520:five_prime_UTR | 35.0% | |
| CTGCATATTGATGTAAAGGA+GGG | - | chr5_2:56527875-56527894 | Msa0777520:five_prime_UTR | 35.0% | |
| TGAAGAAAAGGAGTTATGCT+TGG | - | chr5_2:56527945-56527964 | Msa0777520:five_prime_UTR | 35.0% | |
| GAAGAAAAGGAGTTATGCTT+GGG | - | chr5_2:56527946-56527965 | Msa0777520:five_prime_UTR | 35.0% | |
| TATAGGAAAAGAAAGTGGCC+GGG | + | chr5_2:56524075-56524094 | None:intergenic | 40.0% | |
| TGGATCTAAGAACAGGAACA+GGG | + | chr5_2:56524210-56524229 | None:intergenic | 40.0% | |
| ATGGATCTAAGAACAGGAAC+AGG | + | chr5_2:56524211-56524230 | None:intergenic | 40.0% | |
| ATGAAGTAGAAGAAGCTGAG+AGG | + | chr5_2:56524241-56524260 | None:intergenic | 40.0% | |
| TCCAAACACACCTTTCTTTC+AGG | - | chr5_2:56524260-56524279 | Msa0777520:three_prime_UTR | 40.0% | |
| ! | ACCTGAAAGAAAGGTGTGTT+TGG | + | chr5_2:56524264-56524283 | None:intergenic | 40.0% |
| ! | AAACGTGGTTGTTGACTAGT+TGG | + | chr5_2:56524693-56524712 | None:intergenic | 40.0% |
| ! | ACTAGTCAACAACCACGTTT+TGG | - | chr5_2:56524693-56524712 | Msa0777520:CDS | 40.0% |
| ! | AAGTCTTTTCATTTTGGGCC+TGG | - | chr5_2:56525013-56525032 | Msa0777520:CDS | 40.0% |
| ! | AGTCTTTTCATTTTGGGCCT+GGG | - | chr5_2:56525014-56525033 | Msa0777520:CDS | 40.0% |
| TGTCAATATCAGAGGGTTTG+AGG | - | chr5_2:56525165-56525184 | Msa0777520:CDS | 40.0% | |
| TAGCAAGCAAATGAAGAGGT+TGG | - | chr5_2:56525340-56525359 | Msa0777520:CDS | 40.0% | |
| CAAGGAAATCACATTCTTGG+TGG | - | chr5_2:56525366-56525385 | Msa0777520:CDS | 40.0% | |
| ! | GAAATCACATTCTTGGTGGT+GGG | - | chr5_2:56525370-56525389 | Msa0777520:CDS | 40.0% |
| TCAGTCCCAAGAATTCTAAG+TGG | - | chr5_2:56525402-56525421 | Msa0777520:CDS | 40.0% | |
| !! | TGAGTTTGTTAATGCATGCC+TGG | - | chr5_2:56525503-56525522 | Msa0777520:CDS | 40.0% |
| !! | GAGTTTGTTAATGCATGCCT+GGG | - | chr5_2:56525504-56525523 | Msa0777520:CDS | 40.0% |
| CAACTATACCAAAACTGCAG+AGG | + | chr5_2:56525561-56525580 | None:intergenic | 40.0% | |
| AATCACAAATCTCCCCAAGA+AGG | + | chr5_2:56525607-56525626 | None:intergenic | 40.0% | |
| TGTATGTCGGTAATTGGCAA+TGG | - | chr5_2:56525648-56525667 | Msa0777520:CDS | 40.0% | |
| TCAACATCCGTTTCACATTC+CGG | + | chr5_2:56525795-56525814 | None:intergenic | 40.0% | |
| GATGTTGAAGCTGATAGAAG+AGG | - | chr5_2:56525807-56525826 | Msa0777520:CDS | 40.0% | |
| TTACAAGAAGAGGCCAGAAT+TGG | - | chr5_2:56525864-56525883 | Msa0777520:CDS | 40.0% | |
| TCAACCAAAGCAACCAATTC+TGG | + | chr5_2:56525880-56525899 | None:intergenic | 40.0% | |
| AGTCACATGATCGTAACGTT+CGG | + | chr5_2:56525932-56525951 | None:intergenic | 40.0% | |
| ATCATGTGACTGGAGAATTG+CGG | - | chr5_2:56525941-56525960 | Msa0777520:CDS | 40.0% | |
| ! | GCTGGGTTTGATTTCTTTCT+TGG | - | chr5_2:56526081-56526100 | Msa0777520:CDS | 40.0% |
| GATTTCTTTCTTGGAACTGG+TGG | - | chr5_2:56526090-56526109 | Msa0777520:CDS | 40.0% | |
| ! | ACTCATCTTCTCCGTCTTTT+TGG | + | chr5_2:56526134-56526153 | None:intergenic | 40.0% |
| AGATGAGTCCTCTACTATGA+CGG | - | chr5_2:56526146-56526165 | Msa0777520:CDS | 40.0% | |
| GAAAAACTTTGGACACAGGA+AGG | - | chr5_2:56526291-56526310 | Msa0777520:intron | 40.0% | |
| GAGGTTTCAGTTTCATCTAG+TGG | - | chr5_2:56526324-56526343 | Msa0777520:intron | 40.0% | |
| GGTTTCAGTTTCATCTAGTG+GGG | - | chr5_2:56526326-56526345 | Msa0777520:intron | 40.0% | |
| !! | TATGGATGTTGGTGTTGAGT+TGG | - | chr5_2:56526500-56526519 | Msa0777520:intron | 40.0% |
| AGTTGCTTCACTGAAAATCG+AGG | - | chr5_2:56526641-56526660 | Msa0777520:CDS | 40.0% | |
| !! | AAAGACTAGTTTATCGGACC+GGG | - | chr5_2:56526800-56526819 | Msa0777520:intron | 40.0% |
| TTTCTGCTCAGCATCAGATA+CGG | + | chr5_2:56526853-56526872 | None:intergenic | 40.0% | |
| ATCCGAAAAGATAGAGATGG+AGG | - | chr5_2:56527004-56527023 | Msa0777520:intron | 40.0% | |
| ! | TGCCTCCATCTCTATCTTTT+CGG | + | chr5_2:56527009-56527028 | None:intergenic | 40.0% |
| ACTGAGAGAGAACAGCATAA+AGG | - | chr5_2:56527070-56527089 | Msa0777520:intron | 40.0% | |
| TGTAGAAGTAGGTTCACTCA+AGG | - | chr5_2:56527142-56527161 | Msa0777520:intron | 40.0% | |
| ! | GCATAAGAGGGTTCCAATTT+TGG | - | chr5_2:56527442-56527461 | Msa0777520:intron | 40.0% |
| CAACAAGCATAGGACATTAC+AGG | + | chr5_2:56527536-56527555 | None:intergenic | 40.0% | |
| TAATGGGAGACAAAGAGTAG+TGG | + | chr5_2:56527904-56527923 | None:intergenic | 40.0% | |
| AAAAGGAGTTATGCTTGGGT+TGG | - | chr5_2:56527950-56527969 | Msa0777520:five_prime_UTR | 40.0% | |
| TATGTAGGGTGGGGACATAT+AGG | + | chr5_2:56524092-56524111 | None:intergenic | 45.0% | |
| !! | GGTTTGGCTTGGTTTGTATG+TGG | + | chr5_2:56524168-56524187 | None:intergenic | 45.0% |
| GATTTGAGGAGAGAGAGGTT+TGG | + | chr5_2:56524184-56524203 | None:intergenic | 45.0% | |
| GAAGCTGAGAGGTTAAGCAA+TGG | + | chr5_2:56524230-56524249 | None:intergenic | 45.0% | |
| !!! | TCAACAACCACGTTTTGGAG+CGG | - | chr5_2:56524698-56524717 | Msa0777520:CDS | 45.0% |
| TGATTACGTGATACGACACG+TGG | - | chr5_2:56524721-56524740 | Msa0777520:CDS | 45.0% | |
| !! | AGAAGTGCGTGAGTTTTGCT+TGG | + | chr5_2:56524976-56524995 | None:intergenic | 45.0% |
| ! | TTTTCATTTTGGGCCTGGGT+CGG | - | chr5_2:56525018-56525037 | Msa0777520:CDS | 45.0% |
| AATGTGGACCACACCTACAT+GGG | + | chr5_2:56525055-56525074 | None:intergenic | 45.0% | |
| CAATATCAGAGGGTTTGAGG+AGG | - | chr5_2:56525168-56525187 | Msa0777520:CDS | 45.0% | |
| TCTGGAAAATGGCTGCTTCT+GGG | - | chr5_2:56525205-56525224 | Msa0777520:CDS | 45.0% | |
| !! | TGCTTCTGGGGTAAGTGTTA+TGG | - | chr5_2:56525218-56525237 | Msa0777520:CDS | 45.0% |
| GGAAATCACATTCTTGGTGG+TGG | - | chr5_2:56525369-56525388 | Msa0777520:CDS | 45.0% | |
| CTGTGGGATTGTCAGAATCA+CGG | - | chr5_2:56525531-56525550 | Msa0777520:CDS | 45.0% | |
| CTTTAACCTCAGAGATGGAC+CGG | - | chr5_2:56525773-56525792 | Msa0777520:CDS | 45.0% | |
| AGATGGACCGGAATGTGAAA+CGG | - | chr5_2:56525785-56525804 | Msa0777520:CDS | 45.0% | |
| TTGGTTGAAGAGTTCTACCG+TGG | - | chr5_2:56525892-56525911 | Msa0777520:CDS | 45.0% | |
| GAACGTTACGATCATGTGAC+TGG | - | chr5_2:56525931-56525950 | Msa0777520:CDS | 45.0% | |
| CAATCTGATCTCCAATCCCA+AGG | - | chr5_2:56525973-56525992 | Msa0777520:CDS | 45.0% | |
| TTTGGAGAGGGCAAAGTTGA+GGG | + | chr5_2:56526030-56526049 | None:intergenic | 45.0% | |
| GATTTACGATGGGTCACGTT+TGG | + | chr5_2:56526048-56526067 | None:intergenic | 45.0% | |
| CCGGTTGCTTGATTTACGAT+GGG | + | chr5_2:56526058-56526077 | None:intergenic | 45.0% | |
| CCCATCGTAAATCAAGCAAC+CGG | - | chr5_2:56526055-56526074 | Msa0777520:CDS | 45.0% | |
| CCATCGTAAATCAAGCAACC+GGG | - | chr5_2:56526056-56526075 | Msa0777520:CDS | 45.0% | |
| GATGAGTCCTCTACTATGAC+GGG | - | chr5_2:56526147-56526166 | Msa0777520:CDS | 45.0% | |
| TATTCAGCTTTCTCGCGGAA+TGG | - | chr5_2:56526207-56526226 | Msa0777520:CDS | 45.0% | |
| !! | GGTGTTGAGTTGGAAGTTGA+AGG | - | chr5_2:56526510-56526529 | Msa0777520:intron | 45.0% |
| !! | GAAGTTGAAGGAAGCATCGA+TGG | - | chr5_2:56526522-56526541 | Msa0777520:intron | 45.0% |
| !! | AAGCATCGATGGTGTGGATA+AGG | - | chr5_2:56526533-56526552 | Msa0777520:intron | 45.0% |
| AAGGAATTGTTCGAGCCAAG+TGG | - | chr5_2:56526552-56526571 | Msa0777520:intron | 45.0% | |
| CAGTGAAGCAACTTGCGTTT+CGG | + | chr5_2:56526634-56526653 | None:intergenic | 45.0% | |
| CAGCTGCTGAATTCTATCTG+AGG | + | chr5_2:56526676-56526695 | None:intergenic | 45.0% | |
| AGATAGAATTCAGCAGCTGC+AGG | - | chr5_2:56526677-56526696 | Msa0777520:CDS | 45.0% | |
| !! | TCAGCTTGACTCGGCTAAAA+AGG | - | chr5_2:56526701-56526720 | Msa0777520:intron | 45.0% |
| TGAAAGAGCTGATCAGAGAG+TGG | - | chr5_2:56526937-56526956 | Msa0777520:intron | 45.0% | |
| GAAAGAGCTGATCAGAGAGT+GGG | - | chr5_2:56526938-56526957 | Msa0777520:intron | 45.0% | |
| AGTAGGTTCACTCAAGGAAG+AGG | - | chr5_2:56527148-56527167 | Msa0777520:intron | 45.0% | |
| GAAGAGGTGAACTCAAGAGA+CGG | - | chr5_2:56527164-56527183 | Msa0777520:intron | 45.0% | |
| AACTCAAGAGACGGTAGGAT+TGG | - | chr5_2:56527173-56527192 | Msa0777520:intron | 45.0% | |
| AACAAAGGCGAAGAAACTCG+AGG | - | chr5_2:56527289-56527308 | Msa0777520:intron | 45.0% | |
| ATGCAGGATCTATCACAGCA+GGG | + | chr5_2:56527634-56527653 | None:intergenic | 45.0% | |
| AATGCAGGATCTATCACAGC+AGG | + | chr5_2:56527635-56527654 | None:intergenic | 45.0% | |
| AGATCCTGCATTCACGCATT+CGG | - | chr5_2:56527643-56527662 | Msa0777520:intron | 45.0% | |
| CATCAGTGGTCGTTTGATCT+TGG | - | chr5_2:56527668-56527687 | Msa0777520:intron | 45.0% | |
| TCATAGATTCCCCGCATTCA+CGG | + | chr5_2:56527764-56527783 | None:intergenic | 45.0% | |
| !! | GATAATATAATAATATAAAA+TGG | - | chr5_2:56524782-56524801 | Msa0777520:CDS | 5.0% |
| GGAGAGATTTGAGGAGAGAG+AGG | + | chr5_2:56524189-56524208 | None:intergenic | 50.0% | |
| CAGGAACAGGGAGAGATTTG+AGG | + | chr5_2:56524198-56524217 | None:intergenic | 50.0% | |
| GTAATCACCGCTCCAAAACG+TGG | + | chr5_2:56524708-56524727 | None:intergenic | 50.0% | |
| AATACAGGCCCATGTAGGTG+TGG | - | chr5_2:56525044-56525063 | Msa0777520:CDS | 50.0% | |
| CAATGTGGACCACACCTACA+TGG | + | chr5_2:56525056-56525075 | None:intergenic | 50.0% | |
| ATCAGAGGGTTTGAGGAGGT+AGG | - | chr5_2:56525172-56525191 | Msa0777520:CDS | 50.0% | |
| !! | GTAGCAGCTGCTCTGGAAAA+TGG | - | chr5_2:56525194-56525213 | Msa0777520:CDS | 50.0% |
| ! | CTCTGGAAAATGGCTGCTTC+TGG | - | chr5_2:56525204-56525223 | Msa0777520:CDS | 50.0% |
| CTGGAAAATGGCTGCTTCTG+GGG | - | chr5_2:56525206-56525225 | Msa0777520:CDS | 50.0% | |
| ATGCATGCCTGGGTTTACTG+TGG | - | chr5_2:56525514-56525533 | Msa0777520:CDS | 50.0% | |
| TGCATGCCTGGGTTTACTGT+GGG | - | chr5_2:56525515-56525534 | Msa0777520:CDS | 50.0% | |
| GACAATCCCACAGTAAACCC+AGG | + | chr5_2:56525524-56525543 | None:intergenic | 50.0% | |
| GAGGCCAGAATTGGTTGCTT+TGG | - | chr5_2:56525873-56525892 | Msa0777520:CDS | 50.0% | |
| CTACCGTGGTTACCGATCAT+TGG | - | chr5_2:56525906-56525925 | Msa0777520:CDS | 50.0% | |
| CGTAACGTTCGGCCAATGAT+CGG | + | chr5_2:56525921-56525940 | None:intergenic | 50.0% | |
| TGATCTCCAATCCCAAGGCT+CGG | - | chr5_2:56525978-56525997 | Msa0777520:CDS | 50.0% | |
| AAAAACCCGAGCCTTGGGAT+TGG | + | chr5_2:56525987-56526006 | None:intergenic | 50.0% | |
| GTCTGAAAAACCCGAGCCTT+GGG | + | chr5_2:56525992-56526011 | None:intergenic | 50.0% | |
| TGTCTGAAAAACCCGAGCCT+TGG | + | chr5_2:56525993-56526012 | None:intergenic | 50.0% | |
| GTTTGGAGAGGGCAAAGTTG+AGG | + | chr5_2:56526031-56526050 | None:intergenic | 50.0% | |
| CCCGGTTGCTTGATTTACGA+TGG | + | chr5_2:56526059-56526078 | None:intergenic | 50.0% | |
| AGAAATCAAACCCAGCAGCC+CGG | + | chr5_2:56526077-56526096 | None:intergenic | 50.0% | |
| GTTGGAAAATGAACTGCGCG+AGG | - | chr5_2:56526263-56526282 | Msa0777520:intron | 50.0% | |
| ACAGGAAGGTGAACATGCAG+AGG | - | chr5_2:56526305-56526324 | Msa0777520:intron | 50.0% | |
| !! | TGAAGGAAGCATCGATGGTG+TGG | - | chr5_2:56526527-56526546 | Msa0777520:intron | 50.0% |
| AGTCCCTGATCTCATGATCC+CGG | + | chr5_2:56526821-56526840 | None:intergenic | 50.0% | |
| GCTCTTCAAATGATCGACCG+CGG | + | chr5_2:56526968-56526987 | None:intergenic | 50.0% | |
| AGGTGAACTCAAGAGACGGT+AGG | - | chr5_2:56527168-56527187 | Msa0777520:intron | 50.0% | |
| GAAGAAACTCGAGGAACAGG+TGG | - | chr5_2:56527298-56527317 | Msa0777520:intron | 50.0% | |
| GATCCTGCATTCACGCATTC+GGG | - | chr5_2:56527644-56527663 | Msa0777520:intron | 50.0% | |
| CGGGGAATCTATGACTAGTG+TGG | - | chr5_2:56527770-56527789 | Msa0777520:five_prime_UTR | 50.0% | |
| AAGAAAGTGGCCGGGAAGGA+AGG | + | chr5_2:56524067-56524086 | None:intergenic | 55.0% | |
| GGAAAAGAAAGTGGCCGGGA+AGG | + | chr5_2:56524071-56524090 | None:intergenic | 55.0% | |
| GAGGAGAGAGAGGTTTGGCT+TGG | + | chr5_2:56524179-56524198 | None:intergenic | 55.0% | |
| GGTGGAATACAGGCCCATGT+AGG | - | chr5_2:56525039-56525058 | Msa0777520:CDS | 55.0% | |
| ! | ACGGTGAGCCTCTGCAGTTT+TGG | - | chr5_2:56525550-56525569 | Msa0777520:CDS | 55.0% |
| CACATTCCGGTCCATCTCTG+AGG | + | chr5_2:56525782-56525801 | None:intergenic | 55.0% | |
| CGGCCAATGATCGGTAACCA+CGG | + | chr5_2:56525912-56525931 | None:intergenic | 55.0% | |
| GATCTCCAATCCCAAGGCTC+GGG | - | chr5_2:56525979-56525998 | Msa0777520:CDS | 55.0% | |
| !! | GGCTCGGGTTTTTCAGACAC+TGG | - | chr5_2:56525994-56526013 | Msa0777520:CDS | 55.0% |
| CGATGGGTCACGTTTGGAGA+GGG | + | chr5_2:56526042-56526061 | None:intergenic | 55.0% | |
| ACGATGGGTCACGTTTGGAG+AGG | + | chr5_2:56526043-56526062 | None:intergenic | 55.0% | |
| AAATCAAGCAACCGGGCTGC+TGG | - | chr5_2:56526063-56526082 | Msa0777520:CDS | 55.0% | |
| AATCAAGCAACCGGGCTGCT+GGG | - | chr5_2:56526064-56526083 | Msa0777520:CDS | 55.0% | |
| CTCGGAACCCGTCATAGTAG+AGG | + | chr5_2:56526157-56526176 | None:intergenic | 55.0% | |
| !! | CTCTACTATGACGGGTTCCG+AGG | - | chr5_2:56526155-56526174 | Msa0777520:CDS | 55.0% |
| !! | TCGCGGAATGGTACTGATCC+AGG | - | chr5_2:56526219-56526238 | Msa0777520:CDS | 55.0% |
| !! | CGCGGAATGGTACTGATCCA+GGG | - | chr5_2:56526220-56526239 | Msa0777520:CDS | 55.0% |
| AGTGAGGCTGTGTCACCACT+TGG | + | chr5_2:56526570-56526589 | None:intergenic | 55.0% | |
| AGTGGTGACACAGCCTCACT+TGG | - | chr5_2:56526570-56526589 | Msa0777520:intron | 55.0% | |
| GTGGTGACACAGCCTCACTT+GGG | - | chr5_2:56526571-56526590 | Msa0777520:intron | 55.0% | |
| TGGTGACACAGCCTCACTTG+GGG | - | chr5_2:56526572-56526591 | Msa0777520:intron | 55.0% | |
| GCTGCAGGATCAGCTTGACT+CGG | - | chr5_2:56526692-56526711 | Msa0777520:intron | 55.0% | |
| GGACCGGGATCATGAGATCA+GGG | - | chr5_2:56526815-56526834 | Msa0777520:exon | 55.0% | |
| ATCAGAGAGTGGGAAAGCCG+CGG | - | chr5_2:56526948-56526967 | Msa0777520:intron | 55.0% | |
| GGCGAAGAAACTCGAGGAAC+AGG | - | chr5_2:56527295-56527314 | Msa0777520:intron | 55.0% | |
| AACTCGAGGAACAGGTGGAG+AGG | - | chr5_2:56527303-56527322 | Msa0777520:intron | 55.0% | |
| TGTCCCGAATGCGTGAATGC+AGG | + | chr5_2:56527650-56527669 | None:intergenic | 55.0% | |
| TCACGCATTCGGGACATCAG+TGG | - | chr5_2:56527654-56527673 | Msa0777520:intron | 55.0% | |
| ATTCCCCGCATTCACGGAGT+CGG | + | chr5_2:56527758-56527777 | None:intergenic | 55.0% | |
| ! | TCATTTTGGGCCTGGGTCGG+TGG | - | chr5_2:56525021-56525040 | Msa0777520:CDS | 60.0% |
| GAGGTAGGTAGCAGCTGCTC+TGG | - | chr5_2:56525187-56525206 | Msa0777520:CDS | 60.0% | |
| GGAGAGGGCAAAGTTGAGGG+CGG | + | chr5_2:56526027-56526046 | None:intergenic | 60.0% | |
| TGACACAGCCTCACTTGGGG+AGG | - | chr5_2:56526575-56526594 | Msa0777520:intron | 60.0% | |
| TCGAAGCTCCTCCCCAAGTG+AGG | + | chr5_2:56526586-56526605 | None:intergenic | 60.0% | |
| CGGACCGGGATCATGAGATC+AGG | - | chr5_2:56526814-56526833 | Msa0777520:exon | 60.0% | |
| ! | AGCAGCTGAAGAGAAGCGCG+AGG | - | chr5_2:56527346-56527365 | Msa0777520:intron | 60.0% |
| ! | AAGAGAAGCGCGAGGCGATC+AGG | - | chr5_2:56527354-56527373 | Msa0777520:intron | 60.0% |
| CTGTCCCGACTCCGTGAATG+CGG | - | chr5_2:56527750-56527769 | Msa0777520:intron | 60.0% | |
| TGTCCCGACTCCGTGAATGC+GGG | - | chr5_2:56527751-56527770 | Msa0777520:intron | 60.0% | |
| TTCCCCGCATTCACGGAGTC+GGG | + | chr5_2:56527757-56527776 | None:intergenic | 60.0% | |
| GGCCTGGGTCGGTGGAATAC+AGG | - | chr5_2:56525029-56525048 | Msa0777520:CDS | 65.0% | |
| GGCCTGTATTCCACCGACCC+AGG | + | chr5_2:56525034-56525053 | None:intergenic | 65.0% | |
| GTCCCGACTCCGTGAATGCG+GGG | - | chr5_2:56527752-56527771 | Msa0777520:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 56524057 | 56527980 | 56524057 | ID=Msa0777520;Name=Msa0777520 |
| chr5_2 | mRNA | 56524057 | 56527980 | 56524057 | ID=Msa0777520-mRNA-1;Parent=Msa0777520;Name=Msa0777520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=259|1|1|1|0.66|0.5|4|508|604 |
| chr5_2 | exon | 56524057 | 56526252 | 56524057 | ID=Msa0777520-mRNA-1:exon:16736;Parent=Msa0777520-mRNA-1 |
| chr5_2 | exon | 56526594 | 56526705 | 56526594 | ID=Msa0777520-mRNA-1:exon:16735;Parent=Msa0777520-mRNA-1 |
| chr5_2 | exon | 56526810 | 56526858 | 56526810 | ID=Msa0777520-mRNA-1:exon:16734;Parent=Msa0777520-mRNA-1 |
| chr5_2 | exon | 56527756 | 56527980 | 56527756 | ID=Msa0777520-mRNA-1:exon:16733;Parent=Msa0777520-mRNA-1 |
| chr5_2 | five_prime_UTR | 56527756 | 56527980 | 56527756 | ID=Msa0777520-mRNA-1:five_prime_utr;Parent=Msa0777520-mRNA-1 |
| chr5_2 | five_prime_UTR | 56526825 | 56526858 | 56526825 | ID=Msa0777520-mRNA-1:five_prime_utr;Parent=Msa0777520-mRNA-1 |
| chr5_2 | CDS | 56526810 | 56526824 | 56526810 | ID=Msa0777520-mRNA-1:cds;Parent=Msa0777520-mRNA-1 |
| chr5_2 | CDS | 56526594 | 56526705 | 56526594 | ID=Msa0777520-mRNA-1:cds;Parent=Msa0777520-mRNA-1 |
| chr5_2 | CDS | 56524565 | 56526252 | 56524565 | ID=Msa0777520-mRNA-1:cds;Parent=Msa0777520-mRNA-1 |
| chr5_2 | three_prime_UTR | 56524057 | 56524564 | 56524057 | ID=Msa0777520-mRNA-1:three_prime_utr;Parent=Msa0777520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
