AlfalfaGEDB | Msa0855110

M. sativa cultivar zhongmu-4 / Msa0855110

KEGG: K10352
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805
PFAM: PF07765.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855110	XP_003616041.1	96.358	604	22	0	1	604	1	604	0.0	1188

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855110	sp\|F4KEW8\|NET4A_ARATH	45.695	604	253	13	6	596	6	547	3.64e-133	404

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855110	G7K0U4	96.358	604	22	0	1	604	1	604	0.0	1188

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016540	Msa0855110	0.808042	3.760636e-50	-8.615850e-47
Msa0036540	Msa0855110	0.843865	1.077132e-58	-8.615850e-47
Msa0046560	Msa0855110	0.815024	1.142760e-51	-8.615850e-47
Msa0084400	Msa0855110	0.806283	8.868825e-50	-8.615850e-47
Msa0090510	Msa0855110	0.802474	5.514211e-49	-8.615850e-47
Msa0106620	Msa0855110	0.834716	2.551201e-56	-8.615850e-47
Msa0106710	Msa0855110	0.840515	8.301297e-58	-8.615850e-47
Msa0108410	Msa0855110	0.817715	2.855973e-52	-8.615850e-47
Msa0119440	Msa0855110	0.813723	2.216000e-51	-8.615850e-47
Msa0130720	Msa0855110	0.808532	2.957768e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855110	MtrunA17_Chr5g0432781	96.358	604	22	0	1	604	1	604	0.0	1188
Msa0855110	MtrunA17_Chr3g0107891	51.365	586	196	11	44	604	15	536	9.05e-174	504
Msa0855110	MtrunA17_Chr6g0483761	31.749	526	307	12	112	604	2	508	4.53e-52	186
Msa0855110	MtrunA17_Chr1g0204981	59.690	129	40	2	16	134	8	134	1.83e-42	164
Msa0855110	MtrunA17_Chr1g0185241	75.862	87	21	0	16	102	10	96	2.46e-40	158
Msa0855110	MtrunA17_Chr5g0394641	75.862	87	21	0	16	102	8	94	2.11e-39	155
Msa0855110	MtrunA17_Chr7g0260161	28.455	615	299	22	16	513	8	598	3.65e-39	154
Msa0855110	MtrunA17_Chr5g0412211	55.556	99	40	2	20	118	9	103	5.35e-31	129
Msa0855110	MtrunA17_Chr8g0367521	44.715	123	58	3	20	132	9	131	1.10e-28	122
Msa0855110	MtrunA17_Chr3g0128621	28.065	367	235	7	237	593	195	542	8.92e-28	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855110	AT5G58320.5	45.695	604	253	13	6	596	6	547	3.70e-134	404
Msa0855110	AT5G58320.2	45.695	604	253	13	6	596	6	547	3.70e-134	404
Msa0855110	AT2G30500.2	43.791	612	241	16	1	604	1	517	4.49e-125	379
Msa0855110	AT2G30500.1	43.791	612	241	16	1	604	1	517	4.49e-125	379
Msa0855110	AT2G30500.3	43.678	609	240	16	4	604	3	516	3.49e-123	374
Msa0855110	AT5G58320.1	50.442	452	199	10	6	448	6	441	9.69e-121	368
Msa0855110	AT5G58320.4	50.442	452	199	10	6	448	6	441	9.69e-121	368
Msa0855110	AT5G58320.3	48.804	418	181	9	44	448	1	398	3.03e-102	317
Msa0855110	AT1G03080.3	29.313	597	343	20	19	555	10	587	9.83e-40	157
Msa0855110	AT1G03080.1	29.313	597	343	20	19	555	10	587	9.83e-40	157

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Find 193 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGTTATGCTTGGGT+TGG	0.556606	5_4:-48200724	None:intergenic
AAAGACTAGTTTATCGGACC+GGG	0.567985	5_4:-48201890	Msa0855110:CDS
AAAGAGCCACTTAGAATTCT+TGG	0.264250	5_4:+48203286	None:intergenic
AAATCAAGCAACCGGGCTGC+TGG	0.367538	5_4:-48202627	Msa0855110:CDS
AAATGAAGAGGTTGGAATCA+AGG	0.459735	5_4:-48203346	Msa0855110:CDS
AAATTAAAACCATTAAAACA+TGG	0.605923	5_4:+48201093	None:intergenic
AACAAAGGCGAAGAAACTCG+AGG	0.715395	5_4:-48201401	Msa0855110:CDS
AACTCAAGAGACGGTAGGAT+CGG	0.532458	5_4:-48201517	Msa0855110:CDS
AACTCGAGGAACAGGTGGAG+AGG	0.604467	5_4:-48201387	Msa0855110:CDS
AACTTCAAGAAAGACTTGCG+AGG	0.705338	5_4:-48201915	Msa0855110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTATTATTATGTAGGGTG+GGG	+	chr5_4:48200769-48200788	None:intergenic	30.0%
CTTGTATTATTATGTAGGGT+GGG	+	chr5_4:48200770-48200789	None:intergenic	30.0%
ACTTGTATTATTATGTAGGG+TGG	+	chr5_4:48200771-48200790	None:intergenic	30.0%
AGTTTAGTTACCTGAAAGAA+AGG	+	chr5_4:48200940-48200959	None:intergenic	30.0%
AAATGAAATCCCTTGTCATA+TGG	-	chr5_4:48201086-48201105	Msa0855110:three_prime_UTR	30.0%
AGATAAGAACCATATGACAA+GGG	+	chr5_4:48201098-48201117	None:intergenic	30.0%
AAGATAAGAACCATATGACA+AGG	+	chr5_4:48201099-48201118	None:intergenic	30.0%
TTTGTCGAAAAATCCAAAAC+TGG	+	chr5_4:48201155-48201174	None:intergenic	30.0%
AGACTTAGACAACAAACAAA+CGG	+	chr5_4:48201685-48201704	None:intergenic	30.0%
AACTTGCACATAATAATGGT+TGG	-	chr5_4:48201975-48201994	Msa0855110:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	48200725	48204674	48200725	ID=Msa0855110;Name=Msa0855110
chr5_4	mRNA	48200725	48204674	48200725	ID=Msa0855110-mRNA-1;Parent=Msa0855110;Name=Msa0855110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=258\|1\|1\|1\|0.66\|0.5\|4\|515\|604
chr5_4	exon	48200725	48202927	48200725	ID=Msa0855110-mRNA-1:exon:15195;Parent=Msa0855110-mRNA-1
chr5_4	exon	48203273	48203384	48203273	ID=Msa0855110-mRNA-1:exon:15194;Parent=Msa0855110-mRNA-1
chr5_4	exon	48203489	48203537	48203489	ID=Msa0855110-mRNA-1:exon:15193;Parent=Msa0855110-mRNA-1
chr5_4	exon	48204451	48204674	48204451	ID=Msa0855110-mRNA-1:exon:15192;Parent=Msa0855110-mRNA-1
chr5_4	five_prime_UTR	48204451	48204674	48204451	ID=Msa0855110-mRNA-1:five_prime_utr;Parent=Msa0855110-mRNA-1
chr5_4	five_prime_UTR	48203504	48203537	48203504	ID=Msa0855110-mRNA-1:five_prime_utr;Parent=Msa0855110-mRNA-1
chr5_4	CDS	48203489	48203503	48203489	ID=Msa0855110-mRNA-1:cds;Parent=Msa0855110-mRNA-1
chr5_4	CDS	48203273	48203384	48203273	ID=Msa0855110-mRNA-1:cds;Parent=Msa0855110-mRNA-1
chr5_4	CDS	48201240	48202927	48201240	ID=Msa0855110-mRNA-1:cds;Parent=Msa0855110-mRNA-1
chr5_4	three_prime_UTR	48200725	48201239	48200725	ID=Msa0855110-mRNA-1:three_prime_utr;Parent=Msa0855110-mRNA-1

Gene Sequence

>Msa0855110

ATGGCTGCTTCTGGGGTTAATTCTAGCAAGCAAATGAAGAGGTTGGAATCAAGGAAATCACATTCTTGGTGGTGGGATAGTCATATCAGTCCCAAGAATTCTAAGTGGCTCTTTGAAAATCTTGAAGAGATGGACCGGAATGTGAAACGGATGTTGAAGCTGATAGAAGAGGATGCAGATTCATTTGCCAAAAAAGCAGAAATGTATTACAAGAAGAGGCCAGAATTGGTTGCTTTGGTTGAAGAGTTCTACCGTGGTTACCGATCATTGGCCGAACGTTACGATCATGTGACTGGAGAATTGCGGAAGAATGTACAATCTGATCTCCAATCCCAAGGCTCGGGTTTTTCAGACACTGGCTCTGAACCGCCCTCAACTTTGCCCTCTCCAAATGTGACCCATCGTAAATCAAGCAACCGGGCTGCTGGGTTTGATTTCTTTCTTGGAACTGGTGGGAATGCGTCTGATATAAGCCAAAAAGACGGAGAAGATGAGTCCTCTACTATGACGGGTTCCGAGGATGAATCTGATGATTCATCGGTTAACAATTATTCAGCTTTCTCGCGGAATGGTACTGATCCAGGGATGAACAGAAGAATAAACGAGTTGGAAAATGAACTGCGCGAGGTAAAAGAAAAACTTTGGACACAGGAAGGTGAACATGCAGAGGTTTCAGTTTCATCTAGTGGGGCGACATACGAGAATGCCGACGATGTTTATGCCAAAATTAATGCATACGAACAAGAATTGATGATTGTGAATGAAAAGTTAAGACTTTCAGAAGAAGAAATCACTAAACTAAAGACTGATCTTGAAAACTACAAATCCTTAGATTCAAGAAATATGGATGTTGGTGTTGAGTTGGAAGTTGAAGGAAGCATCGATGGTGTGGATAAGGAATTGTTCGAGCCAAGTGGTGACACAGCCTCACTCGGGGAGGAGCTTCGAATCACTAAAGAAAATCTTAAGGCTTCCGAAACGCAAGTTGCTTCACTGAAAACCGAGGTAAATAAATCCTCAGATAGAATTCAGCAGCTGCAGGATCAGCTTGACTCGGCTAAAAAGGATGTTGCTACTTGGAAAACCAAATTCAACAGCGAGAAAAGAGAGAGCACGAAACTTCAAGAAAGACTTGCGAGGTTAAAGACTAGTTTATCGGACCGGGATCATGAGATCAGGGACTTGAAAACTGCCGTATCTGATGCTGAGCAGAAAATCTTCCCCGAGAAAGCTAATTTGAAGTCTGAAATGTCAAAGTTGTTGGAAGAACAGACACATTTGAAAGAGCTGATCAGAGAGTGGGAAAGCCGCGGTCGATCATTTGAAGAGCAGATCAGAAACATTCAATCCGAAAAGATAGAGATGGAAGCAGAATTGAAAAATGGAATCGAGTTGCTAAAGTCAGTAATTGAACAGAGAGAGAACAGCATAAAGGATCTCAATGTAAGCCTTGATAACTTAAAACTAGAGAAAGATAATCTTAATGTAGAAGTAGGTTCACTCAAGGAAGAGGTGAACTCAAGAGACGGTAGGATCGGAAGTCTCGATTGCCATTTGAACGAATTACACATGGAACATGTACAACTGATTTCTGCAATGGAAGAAGCATGTAGACAAGTAGAAGAGATGAAAACAAAGGCGAAGAAACTCGAGGAACAGGTGGAGAGGCAAAAAACAGAGATCTTAGAAGCAGCTGAAGAGAAGCGCGAGGCGATCAGGCAACTATGCTTCTCACTTGAGCACTATAGAAATAACTATCATATGCTTAAGCAACATTTTATAGGGCATAAGAGGGTTCCAATTTTGGCTGCCTAA

Protein sequence

>Msa0855110

MAASGVNSSKQMKRLESRKSHSWWWDSHISPKNSKWLFENLEEMDRNVKRMLKLIEEDADSFAKKAEMYYKKRPELVALVEEFYRGYRSLAERYDHVTGELRKNVQSDLQSQGSGFSDTGSEPPSTLPSPNVTHRKSSNRAAGFDFFLGTGGNASDISQKDGEDESSTMTGSEDESDDSSVNNYSAFSRNGTDPGMNRRINELENELREVKEKLWTQEGEHAEVSVSSSGATYENADDVYAKINAYEQELMIVNEKLRLSEEEITKLKTDLENYKSLDSRNMDVGVELEVEGSIDGVDKELFEPSGDTASLGEELRITKENLKASETQVASLKTEVNKSSDRIQQLQDQLDSAKKDVATWKTKFNSEKRESTKLQERLARLKTSLSDRDHEIRDLKTAVSDAEQKIFPEKANLKSEMSKLLEEQTHLKELIREWESRGRSFEEQIRNIQSEKIEMEAELKNGIELLKSVIEQRENSIKDLNVSLDNLKLEKDNLNVEVGSLKEEVNSRDGRIGSLDCHLNELHMEHVQLISAMEEACRQVEEMKTKAKKLEEQVERQKTEILEAAEEKREAIRQLCFSLEHYRNNYHMLKQHFIGHKRVPILAA*