Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855110 | XP_003616041.1 | 96.358 | 604 | 22 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855110 | sp|F4KEW8|NET4A_ARATH | 45.695 | 604 | 253 | 13 | 6 | 596 | 6 | 547 | 3.64e-133 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855110 | G7K0U4 | 96.358 | 604 | 22 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016540 | Msa0855110 | 0.808042 | 3.760636e-50 | -8.615850e-47 |
| Msa0036540 | Msa0855110 | 0.843865 | 1.077132e-58 | -8.615850e-47 |
| Msa0046560 | Msa0855110 | 0.815024 | 1.142760e-51 | -8.615850e-47 |
| Msa0084400 | Msa0855110 | 0.806283 | 8.868825e-50 | -8.615850e-47 |
| Msa0090510 | Msa0855110 | 0.802474 | 5.514211e-49 | -8.615850e-47 |
| Msa0106620 | Msa0855110 | 0.834716 | 2.551201e-56 | -8.615850e-47 |
| Msa0106710 | Msa0855110 | 0.840515 | 8.301297e-58 | -8.615850e-47 |
| Msa0108410 | Msa0855110 | 0.817715 | 2.855973e-52 | -8.615850e-47 |
| Msa0119440 | Msa0855110 | 0.813723 | 2.216000e-51 | -8.615850e-47 |
| Msa0604290 | Msa0855110 | 0.800224 | 1.593527e-48 | -8.615850e-47 |
| Msa0616450 | Msa0855110 | 0.826987 | 2.005708e-54 | -8.615850e-47 |
| Msa0617170 | Msa0855110 | 0.843250 | 1.572614e-58 | -8.615850e-47 |
| Msa0629240 | Msa0855110 | 0.814548 | 1.456420e-51 | -8.615850e-47 |
| Msa0631320 | Msa0855110 | 0.801977 | 6.978750e-49 | -8.615850e-47 |
| Msa0640940 | Msa0855110 | 0.820240 | 7.613936e-53 | -8.615850e-47 |
| Msa0644030 | Msa0855110 | 0.808012 | 3.816762e-50 | -8.615850e-47 |
| Msa0655920 | Msa0855110 | 0.825673 | 4.124483e-54 | -8.615850e-47 |
| Msa0659790 | Msa0855110 | 0.822125 | 2.799716e-53 | -8.615850e-47 |
| Msa0672550 | Msa0855110 | 0.816496 | 5.367470e-52 | -8.615850e-47 |
| Msa0679360 | Msa0855110 | 0.821769 | 3.385116e-53 | -8.615850e-47 |
| Msa0682680 | Msa0855110 | 0.804729 | 1.878582e-49 | -8.615850e-47 |
| Msa0697680 | Msa0855110 | 0.813230 | 2.843405e-51 | -8.615850e-47 |
| Msa0699980 | Msa0855110 | 0.818327 | 2.076609e-52 | -8.615850e-47 |
| Msa0703800 | Msa0855110 | 0.807817 | 4.200161e-50 | -8.615850e-47 |
| Msa0709120 | Msa0855110 | 0.870443 | 1.453243e-66 | -8.615850e-47 |
| Msa0724370 | Msa0855110 | 0.802942 | 4.415166e-49 | -8.615850e-47 |
| Msa0735550 | Msa0855110 | 0.944360 | 2.249027e-103 | -8.615850e-47 |
| Msa0743530 | Msa0855110 | 0.814149 | 1.784182e-51 | -8.615850e-47 |
| Msa0746170 | Msa0855110 | 0.813015 | 3.170212e-51 | -8.615850e-47 |
| Msa0746210 | Msa0855110 | 0.809609 | 1.738630e-50 | -8.615850e-47 |
| Msa0764920 | Msa0855110 | 0.806283 | 8.868825e-50 | -8.615850e-47 |
| Msa0777520 | Msa0855110 | 0.895539 | 8.703460e-76 | -8.615850e-47 |
| Msa0780930 | Msa0855110 | 0.801675 | 8.052522e-49 | -8.615850e-47 |
| Msa0786750 | Msa0855110 | 0.805871 | 1.082757e-49 | -8.615850e-47 |
| Msa0822500 | Msa0855110 | 0.805598 | 1.235742e-49 | -8.615850e-47 |
| Msa0830660 | Msa0855110 | 0.815988 | 6.970238e-52 | -8.615850e-47 |
| Msa0833190 | Msa0855110 | -0.812802 | 3.529598e-51 | -8.615850e-47 |
| Msa0840060 | Msa0855110 | 0.821208 | 4.562323e-53 | -8.615850e-47 |
| Msa0130720 | Msa0855110 | 0.808532 | 2.957768e-50 | -8.615850e-47 |
| Msa0136120 | Msa0855110 | 0.802659 | 5.050178e-49 | -8.615850e-47 |
| Msa0137510 | Msa0855110 | 0.803381 | 3.581887e-49 | -8.615850e-47 |
| Msa0139670 | Msa0855110 | 0.872349 | 3.405175e-67 | -8.615850e-47 |
| Msa0142410 | Msa0855110 | 0.800012 | 1.759479e-48 | -8.615850e-47 |
| Msa0173800 | Msa0855110 | 0.835283 | 1.836134e-56 | -8.615850e-47 |
| Msa0183870 | Msa0855110 | 0.800501 | 1.399391e-48 | -8.615850e-47 |
| Msa0183910 | Msa0855110 | 0.806909 | 6.542545e-50 | -8.615850e-47 |
| Msa0192640 | Msa0855110 | 0.819396 | 1.187526e-52 | -8.615850e-47 |
| Msa0202410 | Msa0855110 | 0.836661 | 8.210454e-57 | -8.615850e-47 |
| Msa0204960 | Msa0855110 | 0.814710 | 1.341240e-51 | -8.615850e-47 |
| Msa0205010 | Msa0855110 | 0.811991 | 5.307593e-51 | -8.615850e-47 |
| Msa0209140 | Msa0855110 | 0.808945 | 2.413589e-50 | -8.615850e-47 |
| Msa0213430 | Msa0855110 | 0.817206 | 3.718474e-52 | -8.615850e-47 |
| Msa0223330 | Msa0855110 | 0.814314 | 1.640587e-51 | -8.615850e-47 |
| Msa0229920 | Msa0855110 | 0.820418 | 6.932566e-53 | -8.615850e-47 |
| Msa0231190 | Msa0855110 | 0.812157 | 4.882620e-51 | -8.615850e-47 |
| Msa0234090 | Msa0855110 | 0.804460 | 2.137103e-49 | -8.615850e-47 |
| Msa0378010 | Msa0855110 | 0.802994 | 4.306473e-49 | -8.615850e-47 |
| Msa0382370 | Msa0855110 | 0.855547 | 5.865277e-62 | -8.615850e-47 |
| Msa0385500 | Msa0855110 | 0.829482 | 5.022053e-55 | -8.615850e-47 |
| Msa0395980 | Msa0855110 | 0.824563 | 7.544151e-54 | -8.615850e-47 |
| Msa0403770 | Msa0855110 | 0.801863 | 7.364677e-49 | -8.615850e-47 |
| Msa0418400 | Msa0855110 | 0.815902 | 7.286020e-52 | -8.615850e-47 |
| Msa0419720 | Msa0855110 | 0.808389 | 3.172782e-50 | -8.615850e-47 |
| Msa0423030 | Msa0855110 | 0.810424 | 1.160690e-50 | -8.615850e-47 |
| Msa0427580 | Msa0855110 | 0.821856 | 3.231944e-53 | -8.615850e-47 |
| Msa0432160 | Msa0855110 | 0.835960 | 1.238044e-56 | -8.615850e-47 |
| Msa0437020 | Msa0855110 | 0.807458 | 5.005465e-50 | -8.615850e-47 |
| Msa0440510 | Msa0855110 | 0.814928 | 1.200086e-51 | -8.615850e-47 |
| Msa0450400 | Msa0855110 | -0.832662 | 8.316873e-56 | -8.615850e-47 |
| Msa0459100 | Msa0855110 | 0.805535 | 1.274085e-49 | -8.615850e-47 |
| Msa0472710 | Msa0855110 | 0.816322 | 5.869074e-52 | -8.615850e-47 |
| Msa0472770 | Msa0855110 | 0.811075 | 8.391109e-51 | -8.615850e-47 |
| Msa0476680 | Msa0855110 | 0.837844 | 4.090229e-57 | -8.615850e-47 |
| Msa0481970 | Msa0855110 | 0.827996 | 1.149165e-54 | -8.615850e-47 |
| Msa0241830 | Msa0855110 | 0.844535 | 7.118451e-59 | -8.615850e-47 |
| Msa0244970 | Msa0855110 | 0.843691 | 1.198926e-58 | -8.615850e-47 |
| Msa0244980 | Msa0855110 | 0.838897 | 2.189110e-57 | -8.615850e-47 |
| Msa0245580 | Msa0855110 | 0.807128 | 5.880000e-50 | -8.615850e-47 |
| Msa0249310 | Msa0855110 | 0.815432 | 9.274801e-52 | -8.615850e-47 |
| Msa0257490 | Msa0855110 | 0.829907 | 3.959071e-55 | -8.615850e-47 |
| Msa0261170 | Msa0855110 | 0.821739 | 3.440057e-53 | -8.615850e-47 |
| Msa0281530 | Msa0855110 | 0.821092 | 4.852854e-53 | -8.615850e-47 |
| Msa0283420 | Msa0855110 | 0.846912 | 1.612175e-59 | -8.615850e-47 |
| Msa0287790 | Msa0855110 | 0.808168 | 3.535427e-50 | -8.615850e-47 |
| Msa0296250 | Msa0855110 | 0.811706 | 6.121663e-51 | -8.615850e-47 |
| Msa0296790 | Msa0855110 | 0.855223 | 7.287194e-62 | -8.615850e-47 |
| Msa0305620 | Msa0855110 | 0.816449 | 5.498711e-52 | -8.615850e-47 |
| Msa0307960 | Msa0855110 | 0.802785 | 4.756812e-49 | -8.615850e-47 |
| Msa0317970 | Msa0855110 | 0.829910 | 3.950686e-55 | -8.615850e-47 |
| Msa0320590 | Msa0855110 | 0.827448 | 1.555742e-54 | -8.615850e-47 |
| Msa0321690 | Msa0855110 | 0.864277 | 1.365004e-64 | -8.615850e-47 |
| Msa0322240 | Msa0855110 | 0.818622 | 1.780766e-52 | -8.615850e-47 |
| Msa0322900 | Msa0855110 | 0.828934 | 6.820005e-55 | -8.615850e-47 |
| Msa0341840 | Msa0855110 | 0.806157 | 9.427384e-50 | -8.615850e-47 |
| Msa0358110 | Msa0855110 | 0.819014 | 1.450431e-52 | -8.615850e-47 |
| Msa0362890 | Msa0855110 | 0.805362 | 1.384576e-49 | -8.615850e-47 |
| Msa0482940 | Msa0855110 | 0.853631 | 2.103288e-61 | -8.615850e-47 |
| Msa0485240 | Msa0855110 | 0.827122 | 1.862476e-54 | -8.615850e-47 |
| Msa0491000 | Msa0855110 | 0.842718 | 2.179432e-58 | -8.615850e-47 |
| Msa0511770 | Msa0855110 | 0.807664 | 4.525351e-50 | -8.615850e-47 |
| Msa0518170 | Msa0855110 | 0.827362 | 1.631070e-54 | -8.615850e-47 |
| Msa0519160 | Msa0855110 | 0.805284 | 1.438043e-49 | -8.615850e-47 |
| Msa0521010 | Msa0855110 | 0.839070 | 1.973631e-57 | -8.615850e-47 |
| Msa0542490 | Msa0855110 | 0.802130 | 6.490462e-49 | -8.615850e-47 |
| Msa0542560 | Msa0855110 | 0.807760 | 4.317824e-50 | -8.615850e-47 |
| Msa0547160 | Msa0855110 | 0.803590 | 3.241661e-49 | -8.615850e-47 |
| Msa0547990 | Msa0855110 | 0.800691 | 1.279860e-48 | -8.615850e-47 |
| Msa0581970 | Msa0855110 | 0.805309 | 1.420366e-49 | -8.615850e-47 |
| Msa0600080 | Msa0855110 | 0.805189 | 1.505276e-49 | -8.615850e-47 |
| Msa0600450 | Msa0855110 | 0.813220 | 2.857923e-51 | -8.615850e-47 |
| Msa0844610 | Msa0855110 | 0.811660 | 6.263437e-51 | -8.615850e-47 |
| Msa0855110 | Msa0855140 | 0.820487 | 6.682984e-53 | -8.615850e-47 |
| Msa0855110 | Msa0865970 | 0.816774 | 4.649329e-52 | -8.615850e-47 |
| Msa0855110 | Msa0866070 | 0.813637 | 2.314313e-51 | -8.615850e-47 |
| Msa0855110 | Msa0870650 | 0.811463 | 6.912790e-51 | -8.615850e-47 |
| Msa0855110 | Msa0892640 | 0.842446 | 2.573679e-58 | -8.615850e-47 |
| Msa0855110 | Msa0903780 | 0.823781 | 1.151457e-53 | -8.615850e-47 |
| Msa0855110 | Msa0921420 | 0.811399 | 7.138942e-51 | -8.615850e-47 |
| Msa0855110 | Msa0933760 | 0.800174 | 1.631386e-48 | -8.615850e-47 |
| Msa0855110 | Msa0934140 | 0.828676 | 7.877420e-55 | -8.615850e-47 |
| Msa0855110 | Msa0944200 | 0.839946 | 1.168989e-57 | -8.615850e-47 |
| Msa0855110 | Msa0944610 | 0.808154 | 3.560202e-50 | -8.615850e-47 |
| Msa0855110 | Msa0960390 | 0.801819 | 7.521616e-49 | -8.615850e-47 |
| Msa0855110 | Msa0973070 | 0.819957 | 8.839745e-53 | -8.615850e-47 |
| Msa0855110 | Msa0973320 | 0.809052 | 2.288803e-50 | -8.615850e-47 |
| Msa0855110 | Msa0980540 | 0.800625 | 1.319839e-48 | -8.615850e-47 |
| Msa0855110 | Msa1002960 | 0.822763 | 1.990523e-53 | -8.615850e-47 |
| Msa0855110 | Msa1011090 | 0.805298 | 1.428153e-49 | -8.615850e-47 |
| Msa0855110 | Msa1034500 | 0.812689 | 3.737121e-51 | -8.615850e-47 |
| Msa0855110 | Msa1037520 | 0.822051 | 2.912391e-53 | -8.615850e-47 |
| Msa0855110 | Msa1080490 | 0.802252 | 6.126549e-49 | -8.615850e-47 |
| Msa0855110 | Msa1089450 | 0.822505 | 2.285716e-53 | -8.615850e-47 |
| Msa0855110 | Msa1096070 | 0.803764 | 2.983311e-49 | -8.615850e-47 |
| Msa0855110 | Msa1102820 | 0.807866 | 4.100700e-50 | -8.615850e-47 |
| Msa0855110 | Msa1123350 | 0.819794 | 9.630139e-53 | -8.615850e-47 |
| Msa0855110 | Msa1128270 | 0.814925 | 1.201630e-51 | -8.615850e-47 |
| Msa0855110 | Msa1165270 | 0.802177 | 6.348765e-49 | -8.615850e-47 |
| Msa0855110 | Msa1165780 | 0.817632 | 2.981962e-52 | -8.615850e-47 |
| Msa0855110 | Msa1167010 | 0.804921 | 1.712481e-49 | -8.615850e-47 |
| Msa0855110 | Msa1178580 | 0.812608 | 3.891983e-51 | -8.615850e-47 |
| Msa0855110 | Msa1183140 | 0.801716 | 7.895183e-49 | -8.615850e-47 |
| Msa0855110 | Msa1206650 | 0.805968 | 1.033100e-49 | -8.615850e-47 |
| Msa0855110 | Msa1208790 | 0.820681 | 6.033297e-53 | -8.615850e-47 |
| Msa0855110 | Msa1219150 | 0.820927 | 5.296456e-53 | -8.615850e-47 |
| Msa0855110 | Msa1226270 | 0.806256 | 8.984406e-50 | -8.615850e-47 |
| Msa0855110 | Msa1233850 | 0.813768 | 2.165634e-51 | -8.615850e-47 |
| Msa0855110 | Msa1234620 | 0.870577 | 1.313751e-66 | -8.615850e-47 |
| Msa0855110 | Msa1236110 | -0.828941 | 6.796100e-55 | -8.615850e-47 |
| Msa0855110 | Msa1258980 | 0.806810 | 6.866631e-50 | -8.615850e-47 |
| Msa0855110 | Msa1262890 | 0.801156 | 1.028555e-48 | -8.615850e-47 |
| Msa0855110 | Msa1265020 | 0.810379 | 1.186718e-50 | -8.615850e-47 |
| Msa0855110 | Msa1265590 | 0.821254 | 4.451955e-53 | -8.615850e-47 |
| Msa0855110 | Msa1266330 | 0.804423 | 2.176073e-49 | -8.615850e-47 |
| Msa0855110 | Msa1271130 | 0.817430 | 3.310641e-52 | -8.615850e-47 |
| Msa0855110 | Msa1276150 | 0.808651 | 2.789583e-50 | -8.615850e-47 |
| Msa0855110 | Msa1276970 | 0.832835 | 7.535639e-56 | -8.615850e-47 |
| Msa0855110 | Msa1277780 | 0.801194 | 1.010084e-48 | -8.615850e-47 |
| Msa0855110 | Msa1298100 | 0.808335 | 3.258440e-50 | -8.615850e-47 |
| Msa0855110 | Msa1307180 | 0.819716 | 1.003395e-52 | -8.615850e-47 |
| Msa0855110 | Msa1316360 | 0.806762 | 7.028987e-50 | -8.615850e-47 |
| Msa0855110 | Msa1330630 | 0.808765 | 2.636482e-50 | -8.615850e-47 |
| Msa0855110 | Msa1332050 | 0.811791 | 5.865642e-51 | -8.615850e-47 |
| Msa0855110 | Msa1337850 | 0.822578 | 2.197598e-53 | -8.615850e-47 |
| Msa0855110 | Msa1340200 | 0.806870 | 6.667269e-50 | -8.615850e-47 |
| Msa0855110 | Msa1351540 | 0.818701 | 1.708781e-52 | -8.615850e-47 |
| Msa0855110 | Msa1366550 | 0.815595 | 8.528268e-52 | -8.615850e-47 |
| Msa0855110 | Msa1369690 | 0.830252 | 3.261395e-55 | -8.615850e-47 |
| Msa0855110 | Msa1369920 | -0.806386 | 8.435308e-50 | -8.615850e-47 |
| Msa0855110 | Msa1370590 | 0.851133 | 1.081932e-60 | -8.615850e-47 |
| Msa0855110 | Msa1384100 | 0.852573 | 4.224846e-61 | -8.615850e-47 |
| Msa0855110 | Msa1395730 | 0.825589 | 4.316548e-54 | -8.615850e-47 |
| Msa0855110 | Msa1407190 | 0.815028 | 1.140094e-51 | -8.615850e-47 |
| Msa0855110 | Msa1416260 | 0.811144 | 8.106981e-51 | -8.615850e-47 |
| Msa0855110 | Msa1418240 | 0.824873 | 6.376593e-54 | -8.615850e-47 |
| Msa0855110 | Msa1421900 | 0.828784 | 7.414482e-55 | -8.615850e-47 |
| Msa0855110 | Msa1422810 | 0.846320 | 2.338703e-59 | -8.615850e-47 |
| Msa0855110 | Msa1424350 | 0.812219 | 4.732005e-51 | -8.615850e-47 |
| Msa0855110 | Msa1432130 | 0.828724 | 7.667996e-55 | -8.615850e-47 |
| Msa0855110 | Msa1434090 | 0.808845 | 2.535601e-50 | -8.615850e-47 |
| Msa0855110 | Msa1444120 | 0.856723 | 2.652988e-62 | -8.615850e-47 |
| Msa0855110 | Msa1454450 | 0.804151 | 2.479286e-49 | -8.615850e-47 |
| Msa0855110 | Msa1458090 | 0.836096 | 1.143449e-56 | -8.615850e-47 |
| Msa0855110 | Msa1461540 | 0.817497 | 3.198601e-52 | -8.615850e-47 |
| Msa0855110 | Msa1462470 | 0.814267 | 1.680376e-51 | -8.615850e-47 |
| Msa0855110 | Msa1463030 | 0.810445 | 1.148401e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855110 | MtrunA17_Chr5g0432781 | 96.358 | 604 | 22 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1188 |
| Msa0855110 | MtrunA17_Chr3g0107891 | 51.365 | 586 | 196 | 11 | 44 | 604 | 15 | 536 | 9.05e-174 | 504 |
| Msa0855110 | MtrunA17_Chr6g0483761 | 31.749 | 526 | 307 | 12 | 112 | 604 | 2 | 508 | 4.53e-52 | 186 |
| Msa0855110 | MtrunA17_Chr1g0204981 | 59.690 | 129 | 40 | 2 | 16 | 134 | 8 | 134 | 1.83e-42 | 164 |
| Msa0855110 | MtrunA17_Chr1g0185241 | 75.862 | 87 | 21 | 0 | 16 | 102 | 10 | 96 | 2.46e-40 | 158 |
| Msa0855110 | MtrunA17_Chr5g0394641 | 75.862 | 87 | 21 | 0 | 16 | 102 | 8 | 94 | 2.11e-39 | 155 |
| Msa0855110 | MtrunA17_Chr7g0260161 | 28.455 | 615 | 299 | 22 | 16 | 513 | 8 | 598 | 3.65e-39 | 154 |
| Msa0855110 | MtrunA17_Chr5g0412211 | 55.556 | 99 | 40 | 2 | 20 | 118 | 9 | 103 | 5.35e-31 | 129 |
| Msa0855110 | MtrunA17_Chr8g0367521 | 44.715 | 123 | 58 | 3 | 20 | 132 | 9 | 131 | 1.10e-28 | 122 |
| Msa0855110 | MtrunA17_Chr3g0128621 | 28.065 | 367 | 235 | 7 | 237 | 593 | 195 | 542 | 8.92e-28 | 117 |
| Msa0855110 | MtrunA17_Chr5g0427501 | 50.505 | 99 | 45 | 1 | 20 | 118 | 9 | 103 | 1.03e-25 | 112 |
| Msa0855110 | MtrunA17_Chr7g0268631 | 64.557 | 79 | 25 | 2 | 22 | 97 | 53 | 131 | 6.15e-25 | 106 |
| Msa0855110 | MtrunA17_Chr1g0196081 | 54.839 | 93 | 41 | 1 | 8 | 100 | 4 | 95 | 4.14e-24 | 106 |
| Msa0855110 | MtrunA17_Chr8g0350861 | 27.907 | 301 | 166 | 5 | 313 | 598 | 12 | 276 | 8.50e-19 | 87.0 |
| Msa0855110 | MtrunA17_Chr3g0132861 | 53.333 | 75 | 33 | 1 | 30 | 102 | 14 | 88 | 4.72e-18 | 88.6 |
| Msa0855110 | MtrunA17_Chr8g0350851 | 30.516 | 213 | 139 | 3 | 392 | 596 | 14 | 225 | 1.11e-15 | 77.0 |
| Msa0855110 | MtrunA17_Chr3g0128591 | 26.349 | 315 | 202 | 6 | 237 | 522 | 69 | 382 | 3.27e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855110 | AT5G58320.5 | 45.695 | 604 | 253 | 13 | 6 | 596 | 6 | 547 | 3.70e-134 | 404 |
| Msa0855110 | AT5G58320.2 | 45.695 | 604 | 253 | 13 | 6 | 596 | 6 | 547 | 3.70e-134 | 404 |
| Msa0855110 | AT2G30500.2 | 43.791 | 612 | 241 | 16 | 1 | 604 | 1 | 517 | 4.49e-125 | 379 |
| Msa0855110 | AT2G30500.1 | 43.791 | 612 | 241 | 16 | 1 | 604 | 1 | 517 | 4.49e-125 | 379 |
| Msa0855110 | AT2G30500.3 | 43.678 | 609 | 240 | 16 | 4 | 604 | 3 | 516 | 3.49e-123 | 374 |
| Msa0855110 | AT5G58320.1 | 50.442 | 452 | 199 | 10 | 6 | 448 | 6 | 441 | 9.69e-121 | 368 |
| Msa0855110 | AT5G58320.4 | 50.442 | 452 | 199 | 10 | 6 | 448 | 6 | 441 | 9.69e-121 | 368 |
| Msa0855110 | AT5G58320.3 | 48.804 | 418 | 181 | 9 | 44 | 448 | 1 | 398 | 3.03e-102 | 317 |
| Msa0855110 | AT1G03080.3 | 29.313 | 597 | 343 | 20 | 19 | 555 | 10 | 587 | 9.83e-40 | 157 |
| Msa0855110 | AT1G03080.1 | 29.313 | 597 | 343 | 20 | 19 | 555 | 10 | 587 | 9.83e-40 | 157 |
| Msa0855110 | AT1G03080.2 | 29.313 | 597 | 343 | 20 | 19 | 555 | 10 | 587 | 9.83e-40 | 157 |
| Msa0855110 | AT3G22790.1 | 75.581 | 86 | 20 | 1 | 16 | 101 | 8 | 92 | 2.52e-37 | 149 |
| Msa0855110 | AT3G22790.3 | 75.581 | 86 | 20 | 1 | 16 | 101 | 8 | 92 | 2.52e-37 | 149 |
| Msa0855110 | AT3G22790.2 | 75.581 | 86 | 20 | 1 | 16 | 101 | 8 | 92 | 2.52e-37 | 149 |
| Msa0855110 | AT4G02710.1 | 68.966 | 87 | 27 | 0 | 17 | 103 | 9 | 95 | 1.02e-36 | 147 |
| Msa0855110 | AT4G14760.4 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.89e-35 | 142 |
| Msa0855110 | AT4G14760.2 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.89e-35 | 142 |
| Msa0855110 | AT4G14760.3 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.89e-35 | 142 |
| Msa0855110 | AT4G14760.1 | 69.318 | 88 | 26 | 1 | 16 | 103 | 8 | 94 | 7.89e-35 | 142 |
| Msa0855110 | AT2G22560.1 | 62.651 | 83 | 31 | 0 | 20 | 102 | 9 | 91 | 1.79e-30 | 127 |
| Msa0855110 | AT5G10500.1 | 43.939 | 132 | 71 | 1 | 12 | 140 | 1 | 132 | 5.22e-29 | 123 |
| Msa0855110 | AT1G09720.1 | 61.446 | 83 | 32 | 0 | 20 | 102 | 9 | 91 | 3.42e-28 | 120 |
| Msa0855110 | AT1G58215.1 | 60.241 | 83 | 33 | 0 | 20 | 102 | 9 | 91 | 3.98e-28 | 120 |
| Msa0855110 | AT1G03470.2 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 6.38e-25 | 105 |
| Msa0855110 | AT1G03470.3 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 6.38e-25 | 105 |
| Msa0855110 | AT1G03470.1 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 6.38e-25 | 105 |
| Msa0855110 | AT1G03470.4 | 62.338 | 77 | 28 | 1 | 20 | 95 | 5 | 81 | 6.38e-25 | 105 |
| Msa0855110 | AT2G47920.2 | 56.098 | 82 | 36 | 0 | 16 | 97 | 4 | 85 | 2.56e-24 | 102 |
| Msa0855110 | AT2G47920.1 | 56.098 | 82 | 36 | 0 | 16 | 97 | 4 | 85 | 2.56e-24 | 102 |
| Msa0855110 | AT5G05180.1 | 30.935 | 278 | 149 | 7 | 353 | 595 | 152 | 421 | 1.01e-18 | 89.4 |
| Msa0855110 | AT5G05180.2 | 30.686 | 277 | 127 | 7 | 353 | 595 | 152 | 397 | 1.17e-18 | 89.0 |
| Msa0855110 | AT5G05180.3 | 30.935 | 278 | 149 | 7 | 353 | 595 | 122 | 391 | 1.69e-18 | 88.6 |
| Msa0855110 | AT3G10880.2 | 44.898 | 98 | 53 | 1 | 488 | 584 | 184 | 281 | 5.21e-13 | 70.5 |
| Msa0855110 | AT3G10880.4 | 44.898 | 98 | 53 | 1 | 488 | 584 | 184 | 281 | 5.21e-13 | 70.5 |
| Msa0855110 | AT3G10880.3 | 44.898 | 98 | 53 | 1 | 488 | 584 | 222 | 319 | 5.39e-13 | 70.9 |
| Msa0855110 | AT3G10880.1 | 44.898 | 98 | 53 | 1 | 488 | 584 | 222 | 319 | 5.39e-13 | 70.9 |
| Msa0855110 | AT4G03153.1 | 41.026 | 78 | 41 | 2 | 23 | 95 | 7 | 84 | 6.67e-12 | 65.9 |
Find 193 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGGTTTGATTTCTTTCT+TGG | 0.129859 | 5_4:-48202609 | Msa0855110:CDS |
| CATTATCTTATTGTAAAATT+AGG | 0.158172 | 5_4:-48200823 | Msa0855110:three_prime_UTR |
| GCATAAGAGGGTTCCAATTT+TGG | 0.168910 | 5_4:-48201248 | Msa0855110:CDS |
| TAAAATACCGAGATTGAATT+TGG | 0.169737 | 5_4:-48200977 | Msa0855110:three_prime_UTR |
| CTCTGGAAAATGGCTGCTTC+TGG | 0.173281 | 5_4:-48203490 | Msa0855110:exon |
| TCCAAACACACCTTTCTTTC+AGG | 0.174928 | 5_4:-48204450 | Msa0855110:intron |
| ATCCATATTTCTTGAATCTA+AGG | 0.206718 | 5_4:+48202206 | None:intergenic |
| AAGCAAAATTTATTATATAA+TGG | 0.234836 | 5_4:+48200756 | None:intergenic |
| AATTATTAGGCAGCCAAAAT+TGG | 0.250987 | 5_4:+48201235 | None:intergenic |
| TTGTTCGTATGCATTAATTT+TGG | 0.258097 | 5_4:+48202311 | None:intergenic |
| ATCCTTAGATTCAAGAAATA+TGG | 0.259814 | 5_4:-48202208 | Msa0855110:CDS |
| AAAGAGCCACTTAGAATTCT+TGG | 0.264250 | 5_4:+48203286 | None:intergenic |
| TCAACCAAAGCAACCAATTC+TGG | 0.267721 | 5_4:+48202813 | None:intergenic |
| AGCAAAATTTATTATATAAT+GGG | 0.275609 | 5_4:+48200757 | None:intergenic |
| TCAGCTTGACTCGGCTAAAA+AGG | 0.286993 | 5_4:-48201989 | Msa0855110:CDS |
| TTTGATTTCTTTCTTGGAAC+TGG | 0.294515 | 5_4:-48202603 | Msa0855110:CDS |
| TTAGATTTATACTAATTATT+AGG | 0.298988 | 5_4:+48201222 | None:intergenic |
| TCAACATCCGTTTCACATTC+CGG | 0.333589 | 5_4:+48202898 | None:intergenic |
| GAGGCCAGAATTGGTTGCTT+TGG | 0.335656 | 5_4:-48202817 | Msa0855110:CDS |
| AATCAAGGAAATCACATTCT+TGG | 0.339438 | 5_4:-48203331 | Msa0855110:CDS |
| TCAAAGTTAGAAGCTTGATA+TGG | 0.350146 | 5_4:-48200871 | Msa0855110:three_prime_UTR |
| CATCAGTGGTCGTTTGATCT+TGG | 0.352466 | 5_4:-48201022 | Msa0855110:three_prime_UTR |
| GAGGTAGGTGGTTGCTGCTC+TGG | 0.365877 | 5_4:-48203507 | Msa0855110:five_prime_UTR |
| AAATCAAGCAACCGGGCTGC+TGG | 0.367538 | 5_4:-48202627 | Msa0855110:CDS |
| GACTTCAAATTAGCTTTCTC+GGG | 0.368269 | 5_4:+48201811 | None:intergenic |
| AGAAGCTTGATATGGATATA+AGG | 0.370983 | 5_4:-48200863 | Msa0855110:three_prime_UTR |
| AGACTTCAAATTAGCTTTCT+CGG | 0.376529 | 5_4:+48201810 | None:intergenic |
| GATTTACGATGGGTCACATT+TGG | 0.376878 | 5_4:+48202645 | None:intergenic |
| ATGGATCTAGGAACAGGAAC+AGG | 0.377562 | 5_4:+48204502 | None:intergenic |
| TCTGGAAAATGGCTGCTTCT+GGG | 0.385154 | 5_4:-48203489 | Msa0855110:exon |
| AAGAGAAGCGCGAGGCGATC+AGG | 0.385466 | 5_4:-48201336 | Msa0855110:CDS |
| GAGGTTAAAGACTAGTTTAT+CGG | 0.389465 | 5_4:-48201896 | Msa0855110:CDS |
| CAGTGAAGCAACTTGCGTTT+CGG | 0.398464 | 5_4:+48202059 | None:intergenic |
| GATCCTGCATTCACGCATTC+GGG | 0.401170 | 5_4:-48201046 | Msa0855110:three_prime_UTR |
| AGATCCTGCATTCACGCATT+CGG | 0.403230 | 5_4:-48201047 | Msa0855110:three_prime_UTR |
| GTGGTTGCTGCTCTGGAAAA+TGG | 0.406053 | 5_4:-48203500 | Msa0855110:exon |
| GAGGAGAGAGAGGTTTGGTT+TGG | 0.409019 | 5_4:+48204534 | None:intergenic |
| AATCACTAAAGAAAATCTTA+AGG | 0.409707 | 5_4:-48202085 | Msa0855110:CDS |
| AAGAGCCACTTAGAATTCTT+GGG | 0.412841 | 5_4:+48203287 | None:intergenic |
| TCGCGGAATGGTACTGATCC+AGG | 0.414382 | 5_4:-48202471 | Msa0855110:CDS |
| ACTACAAAGACCTTCCTTCC+CGG | 0.416014 | 5_4:-48204655 | Msa0855110:five_prime_UTR |
| CAACAAGCATAGGACATTAC+AGG | 0.417571 | 5_4:+48201157 | None:intergenic |
| GGCGAAGAAACTCGAGGAAC+AGG | 0.419693 | 5_4:-48201395 | Msa0855110:CDS |
| TTTATTCTTCTGTTCATCCC+TGG | 0.425227 | 5_4:+48202453 | None:intergenic |
| CCCATCGTAAATCAAGCAAC+CGG | 0.428996 | 5_4:-48202635 | Msa0855110:CDS |
| TTACAAGAAGAGGCCAGAAT+TGG | 0.431957 | 5_4:-48202826 | Msa0855110:CDS |
| ACCTGAAAGAAAGGTGTGTT+TGG | 0.435570 | 5_4:+48204449 | None:intergenic |
| CCATGTGTAATTCGTTCAAA+TGG | 0.438638 | 5_4:+48201482 | None:intergenic |
| AGGTTTCAGTTTCATCTAGT+GGG | 0.439800 | 5_4:-48202365 | Msa0855110:CDS |
| GACTTGAGGAGAGAGAGGTT+TGG | 0.440624 | 5_4:+48204529 | None:intergenic |
| GTCTGAAATGTCAAAGTTGT+TGG | 0.441122 | 5_4:-48201791 | Msa0855110:CDS |
| GGATACTTGTATTATTATGT+AGG | 0.441250 | 5_4:+48204605 | None:intergenic |
| AAGCATCGATGGTGTGGATA+AGG | 0.448894 | 5_4:-48202157 | Msa0855110:CDS |
| GAGGTTTCAGTTTCATCTAG+TGG | 0.450219 | 5_4:-48202366 | Msa0855110:CDS |
| AGAGGTTAAGCAATGGATCT+AGG | 0.452031 | 5_4:+48204490 | None:intergenic |
| GGTTTGGTTTGGTTTGTATG+TGG | 0.453634 | 5_4:+48204545 | None:intergenic |
| GATTTCTTTCTTGGAACTGG+TGG | 0.455413 | 5_4:-48202600 | Msa0855110:CDS |
| TGGCTCTTTGAAAATCTTGA+AGG | 0.456114 | 5_4:-48203272 | Msa0855110:intron |
| AAATGAAGAGGTTGGAATCA+AGG | 0.459735 | 5_4:-48203346 | Msa0855110:CDS |
| TGAAGAAAAGGAGTTATGCT+TGG | 0.464990 | 5_4:-48200729 | Msa0855110:three_prime_UTR |
| CCCGGTTGCTTGATTTACGA+TGG | 0.468876 | 5_4:+48202634 | None:intergenic |
| TCATAGATTCCCCGCATTCA+CGG | 0.472121 | 5_4:+48200928 | None:intergenic |
| GAAGAAAAGGAGTTATGCTT+GGG | 0.473967 | 5_4:-48200728 | Msa0855110:three_prime_UTR |
| CTACCGTGGTTACCGATCAT+TGG | 0.475144 | 5_4:-48202784 | Msa0855110:CDS |
| CTTGTATTATTATGTAGGGT+GGG | 0.478489 | 5_4:+48204610 | None:intergenic |
| TATGGATGTTGGTGTTGAGT+TGG | 0.479532 | 5_4:-48202190 | Msa0855110:CDS |
| TAAGCAATGGATCTAGGAAC+AGG | 0.481194 | 5_4:+48204496 | None:intergenic |
| ATTTCTTTCTTGGAACTGGT+GGG | 0.483275 | 5_4:-48202599 | Msa0855110:CDS |
| TTTGGAGAGGGCAAAGTTGA+GGG | 0.486062 | 5_4:+48202663 | None:intergenic |
| AGTTTAGTTACCTGAAAGAA+AGG | 0.487239 | 5_4:+48204440 | None:intergenic |
| ATCTGAGGATTTATTTACCT+CGG | 0.488846 | 5_4:+48202032 | None:intergenic |
| GGAAATCACATTCTTGGTGG+TGG | 0.489138 | 5_4:-48203325 | Msa0855110:CDS |
| CGGACCGGGATCATGAGATC+AGG | 0.489204 | 5_4:-48201876 | Msa0855110:CDS |
| GATAATCTTAATGTAGAAGT+AGG | 0.496198 | 5_4:-48201559 | Msa0855110:CDS |
| ACTTGTATTATTATGTAGGG+TGG | 0.497089 | 5_4:+48204609 | None:intergenic |
| GATATAAGGCAAGCTTGAAA+AGG | 0.497587 | 5_4:-48200849 | Msa0855110:three_prime_UTR |
| ACAGAGAGAGAACAGCATAA+AGG | 0.502772 | 5_4:-48201620 | Msa0855110:CDS |
| TATGTAGGGTGGGGACATAT+AGG | 0.507990 | 5_4:+48204620 | None:intergenic |
| CTTTAACCTCAGAGATGGAC+CGG | 0.508828 | 5_4:-48202917 | Msa0855110:intron |
| AGTGAGGCTGTGTCACCACT+TGG | 0.510418 | 5_4:+48202123 | None:intergenic |
| CAGAAATGTATTACAAGAAG+AGG | 0.510966 | 5_4:-48202836 | Msa0855110:CDS |
| ATTGTCAACATCAGGGTTTG+AGG | 0.511289 | 5_4:-48203529 | Msa0855110:intron |
| TGTCCCGACTCCGTGAATGC+GGG | 0.512081 | 5_4:-48200938 | Msa0855110:three_prime_UTR |
| TTCCCCGCATTCACGGAGTC+GGG | 0.513282 | 5_4:+48200935 | None:intergenic |
| TGAAAGAGCTGATCAGAGAG+TGG | 0.513671 | 5_4:-48201753 | Msa0855110:CDS |
| AGGACTGCATATTGATGTAA+AGG | 0.514347 | 5_4:-48200803 | Msa0855110:three_prime_UTR |
| CCATTTGAACGAATTACACA+TGG | 0.514635 | 5_4:-48201482 | Msa0855110:CDS |
| GAACGTTACGATCATGTGAC+TGG | 0.515279 | 5_4:-48202759 | Msa0855110:CDS |
| TGATCTCCAATCCCAAGGCT+CGG | 0.516253 | 5_4:-48202712 | Msa0855110:CDS |
| TAAAGACTAGTTTATCGGAC+CGG | 0.517594 | 5_4:-48201891 | Msa0855110:CDS |
| GATCTCCAATCCCAAGGCTC+GGG | 0.520448 | 5_4:-48202711 | Msa0855110:CDS |
| AGATAGAATTCAGCAGCTGC+AGG | 0.520939 | 5_4:-48202013 | Msa0855110:CDS |
| CTGGAAAATGGCTGCTTCTG+GGG | 0.522334 | 5_4:-48203488 | Msa0855110:intron |
| CGTAACGTTCGGCCAATGAT+CGG | 0.523697 | 5_4:+48202772 | None:intergenic |
| CCGGTTGCTTGATTTACGAT+GGG | 0.528312 | 5_4:+48202635 | None:intergenic |
| AATGCAGGATCTATCACAGC+AGG | 0.528583 | 5_4:+48201058 | None:intergenic |
| TAGCAAGCAAATGAAGAGGT+TGG | 0.529450 | 5_4:-48203354 | Msa0855110:CDS |
| TATTCAGCTTTCTCGCGGAA+TGG | 0.530197 | 5_4:-48202483 | Msa0855110:CDS |
| GATACTTGTATTATTATGTA+GGG | 0.531861 | 5_4:+48204606 | None:intergenic |
| AACTCAAGAGACGGTAGGAT+CGG | 0.532458 | 5_4:-48201517 | Msa0855110:CDS |
| GAACAGAAGAATAAACGAGT+TGG | 0.532601 | 5_4:-48202445 | Msa0855110:CDS |
| ATTTGGAGAGGGCAAAGTTG+AGG | 0.537843 | 5_4:+48202662 | None:intergenic |
| AGTGGTGACACAGCCTCACT+CGG | 0.538297 | 5_4:-48202120 | Msa0855110:CDS |
| GATTCAAGAAATATGGATGT+TGG | 0.539714 | 5_4:-48202201 | Msa0855110:CDS |
| ATATAGGAAAAGAAAGTGGC+CGG | 0.540204 | 5_4:+48204636 | None:intergenic |
| CGATGGGTCACATTTGGAGA+GGG | 0.541591 | 5_4:+48202651 | None:intergenic |
| AATCAAGCAACCGGGCTGCT+GGG | 0.542696 | 5_4:-48202626 | Msa0855110:CDS |
| AGTAGGTTCACTCAAGGAAG+AGG | 0.544799 | 5_4:-48201542 | Msa0855110:CDS |
| CTCTACTATGACGGGTTCCG+AGG | 0.544882 | 5_4:-48202535 | Msa0855110:CDS |
| AAGAAAGTGGCCGGGAAGGA+AGG | 0.545466 | 5_4:+48204645 | None:intergenic |
| CTGTCCCGACTCCGTGAATG+CGG | 0.553235 | 5_4:-48200939 | Msa0855110:three_prime_UTR |
| GGTGTTGAGTTGGAAGTTGA+AGG | 0.555150 | 5_4:-48202180 | Msa0855110:CDS |
| AAAAGGAGTTATGCTTGGGT+TGG | 0.556606 | 5_4:-48200724 | None:intergenic |
| CAAGGAAATCACATTCTTGG+TGG | 0.558813 | 5_4:-48203328 | Msa0855110:CDS |
| TGTACAACTGATTTCTGCAA+TGG | 0.559967 | 5_4:-48201455 | Msa0855110:CDS |
| TCGAAGCTCCTCCCCGAGTG+AGG | 0.560954 | 5_4:+48202107 | None:intergenic |
| AGATGGACCGGAATGTGAAA+CGG | 0.562058 | 5_4:-48202905 | Msa0855110:CDS |
| AGTCACATGATCGTAACGTT+CGG | 0.563685 | 5_4:+48202761 | None:intergenic |
| TTTCTGCTCAGCATCAGATA+CGG | 0.563946 | 5_4:+48201840 | None:intergenic |
| GATGAGTCCTCTACTATGAC+GGG | 0.566905 | 5_4:-48202543 | Msa0855110:CDS |
| AAAGACTAGTTTATCGGACC+GGG | 0.567985 | 5_4:-48201890 | Msa0855110:CDS |
| AGAAATCAAACCCAGCAGCC+CGG | 0.570169 | 5_4:+48202616 | None:intergenic |
| TTGTATTATTATGTAGGGTG+GGG | 0.570369 | 5_4:+48204611 | None:intergenic |
| GGAGAGACTTGAGGAGAGAG+AGG | 0.570685 | 5_4:+48204524 | None:intergenic |
| ACGAAGTCCAAATTCAATCT+CGG | 0.573725 | 5_4:+48200970 | None:intergenic |
| AGTCCCTGATCTCATGATCC+CGG | 0.574038 | 5_4:+48201872 | None:intergenic |
| CGCGGAATGGTACTGATCCA+GGG | 0.575403 | 5_4:-48202470 | Msa0855110:CDS |
| GAAATCACATTCTTGGTGGT+GGG | 0.575639 | 5_4:-48203324 | Msa0855110:CDS |
| GTGGTGACACAGCCTCACTC+GGG | 0.576029 | 5_4:-48202119 | Msa0855110:CDS |
| GAAAGAGCTGATCAGAGAGT+GGG | 0.576449 | 5_4:-48201752 | Msa0855110:CDS |
| ACTAGTGTGGAATTTAAAAG+TGG | 0.576824 | 5_4:-48200906 | Msa0855110:three_prime_UTR |
| ATTCCCCGCATTCACGGAGT+CGG | 0.577537 | 5_4:+48200934 | None:intergenic |
| GAAGTTGAAGGAAGCATCGA+TGG | 0.578625 | 5_4:-48202168 | Msa0855110:CDS |
| GGATGAATCTGATGATTCAT+CGG | 0.580721 | 5_4:-48202514 | Msa0855110:CDS |
| TCAATCCGAAAAGATAGAGA+TGG | 0.581551 | 5_4:-48201689 | Msa0855110:CDS |
| TGTTGTTATAATCTGAGTCA+AGG | 0.587678 | 5_4:-48201139 | Msa0855110:three_prime_UTR |
| ATTCTAGCAAGCAAATGAAG+AGG | 0.587841 | 5_4:-48203358 | Msa0855110:CDS |
| GAAGCTGAGAGGTTAAGCAA+TGG | 0.588507 | 5_4:+48204483 | None:intergenic |
| TGAAGGAAGCATCGATGGTG+TGG | 0.589058 | 5_4:-48202163 | Msa0855110:CDS |
| GTCCCGACTCCGTGAATGCG+GGG | 0.589862 | 5_4:-48200937 | Msa0855110:three_prime_UTR |
| AGATGAGTCCTCTACTATGA+CGG | 0.591582 | 5_4:-48202544 | Msa0855110:CDS |
| CTCGGAACCCGTCATAGTAG+AGG | 0.596535 | 5_4:+48202536 | None:intergenic |
| GGAAAAGAAAGTGGCCGGGA+AGG | 0.599999 | 5_4:+48204641 | None:intergenic |
| CAGATTATAACAACAAGCAT+AGG | 0.602359 | 5_4:+48201147 | None:intergenic |
| ACTGCATATTGATGTAAAGG+AGG | 0.602626 | 5_4:-48200800 | Msa0855110:three_prime_UTR |
| AACTCGAGGAACAGGTGGAG+AGG | 0.604467 | 5_4:-48201387 | Msa0855110:CDS |
| AAATTAAAACCATTAAAACA+TGG | 0.605923 | 5_4:+48201093 | None:intergenic |
| CGGGGAATCTATGACTAGTG+TGG | 0.606271 | 5_4:-48200919 | Msa0855110:three_prime_UTR |
| ACAATTATTCAGCTTTCTCG+CGG | 0.609429 | 5_4:-48202488 | Msa0855110:CDS |
| GGTTTCAGTTTCATCTAGTG+GGG | 0.617920 | 5_4:-48202364 | Msa0855110:CDS |
| CCATCGTAAATCAAGCAACC+GGG | 0.618032 | 5_4:-48202634 | Msa0855110:CDS |
| TAATGGGAGACAAAGAGTAG+TGG | 0.618477 | 5_4:+48200773 | None:intergenic |
| CAGGAACAGGGAGAGACTTG+AGG | 0.619263 | 5_4:+48204515 | None:intergenic |
| CAATCTGATCTCCAATCCCA+AGG | 0.619499 | 5_4:-48202717 | Msa0855110:CDS |
| AGCAGCTGAAGAGAAGCGCG+AGG | 0.621012 | 5_4:-48201344 | Msa0855110:CDS |
| CTGCATATTGATGTAAAGGA+GGG | 0.621372 | 5_4:-48200799 | Msa0855110:three_prime_UTR |
| TGTAGAAGTAGGTTCACTCA+AGG | 0.622038 | 5_4:-48201548 | Msa0855110:CDS |
| TATAGGAAAAGAAAGTGGCC+GGG | 0.623100 | 5_4:+48204637 | None:intergenic |
| TGAATCATCAGATTCATCCT+CGG | 0.623472 | 5_4:+48202518 | None:intergenic |
| TCAGGGTTTGAGGAGGTAGG+TGG | 0.624311 | 5_4:-48203519 | Msa0855110:intron |
| GGACCGGGATCATGAGATCA+GGG | 0.626205 | 5_4:-48201875 | Msa0855110:CDS |
| ACGATGGGTCACATTTGGAG+AGG | 0.630400 | 5_4:+48202650 | None:intergenic |
| GTCAACATCAGGGTTTGAGG+AGG | 0.630741 | 5_4:-48203526 | Msa0855110:intron |
| GATGTTGAAGCTGATAGAAG+AGG | 0.631830 | 5_4:-48202883 | Msa0855110:CDS |
| TGTCCCGAATGCGTGAATGC+AGG | 0.637659 | 5_4:+48201043 | None:intergenic |
| CAGCTGCTGAATTCTATCTG+AGG | 0.637838 | 5_4:+48202017 | None:intergenic |
| TCAGTCCCAAGAATTCTAAG+TGG | 0.638403 | 5_4:-48203292 | Msa0855110:CDS |
| AGGTGAACTCAAGAGACGGT+AGG | 0.638743 | 5_4:-48201522 | Msa0855110:CDS |
| ATGAAGTAGAAGAAGCTGAG+AGG | 0.643755 | 5_4:+48204472 | None:intergenic |
| TTGGTTGAAGAGTTCTACCG+TGG | 0.644157 | 5_4:-48202798 | Msa0855110:CDS |
| TGGATCTAGGAACAGGAACA+GGG | 0.647082 | 5_4:+48204503 | None:intergenic |
| AGTAGAAGAGATGAAAACAA+AGG | 0.648447 | 5_4:-48201416 | Msa0855110:CDS |
| ACATCAGGGTTTGAGGAGGT+AGG | 0.654611 | 5_4:-48203522 | Msa0855110:intron |
| GAAGAGGTGAACTCAAGAGA+CGG | 0.656685 | 5_4:-48201526 | Msa0855110:CDS |
| GAAGAAACTCGAGGAACAGG+TGG | 0.656748 | 5_4:-48201392 | Msa0855110:CDS |
| TCACGCATTCGGGACATCAG+TGG | 0.658930 | 5_4:-48201036 | Msa0855110:three_prime_UTR |
| ATCAGAGAGTGGGAAAGCCG+CGG | 0.659031 | 5_4:-48201742 | Msa0855110:CDS |
| ACAGGAAGGTGAACATGCAG+AGG | 0.661050 | 5_4:-48202385 | Msa0855110:CDS |
| GGACATATAGGAAAAGAAAG+TGG | 0.663239 | 5_4:+48204632 | None:intergenic |
| GCTGCAGGATCAGCTTGACT+CGG | 0.679769 | 5_4:-48201998 | Msa0855110:CDS |
| AAGGAATTGTTCGAGCCAAG+TGG | 0.683149 | 5_4:-48202138 | Msa0855110:CDS |
| TGGTGACACAGCCTCACTCG+GGG | 0.683452 | 5_4:-48202118 | Msa0855110:CDS |
| GGAGAGGGCAAAGTTGAGGG+CGG | 0.683507 | 5_4:+48202666 | None:intergenic |
| ACTTCAAATTAGCTTTCTCG+GGG | 0.683797 | 5_4:+48201812 | None:intergenic |
| TGACACAGCCTCACTCGGGG+AGG | 0.685440 | 5_4:-48202115 | Msa0855110:CDS |
| GTTGGAAAATGAACTGCGCG+AGG | 0.688241 | 5_4:-48202427 | Msa0855110:CDS |
| ATCATGTGACTGGAGAATTG+CGG | 0.692757 | 5_4:-48202749 | Msa0855110:CDS |
| ATGCAGGATCTATCACAGCA+GGG | 0.704762 | 5_4:+48201059 | None:intergenic |
| AACTTCAAGAAAGACTTGCG+AGG | 0.705338 | 5_4:-48201915 | Msa0855110:CDS |
| AACAAAGGCGAAGAAACTCG+AGG | 0.715395 | 5_4:-48201401 | Msa0855110:CDS |
| GCTCTTCAAATGATCGACCG+CGG | 0.720469 | 5_4:+48201725 | None:intergenic |
| CGGCCAATGATCGGTAACCA+CGG | 0.730068 | 5_4:+48202781 | None:intergenic |
| AGTTGCTTCACTGAAAACCG+AGG | 0.737756 | 5_4:-48202049 | Msa0855110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAAGTGATT+TGG | + | chr5_4:48200976-48200995 | None:intergenic | 10.0% |
| !! | TATGTTTATTATTACTTTAA+TGG | - | chr5_4:48202268-48202287 | Msa0855110:CDS | 10.0% |
| !! | TTAGATTTATACTAATTATT+AGG | + | chr5_4:48204158-48204177 | None:intergenic | 10.0% |
| !!! | TAAATTATATTGCATTTTTT+TGG | + | chr5_4:48204382-48204401 | None:intergenic | 10.0% |
| !! | AGCAAAATTTATTATATAAT+GGG | + | chr5_4:48204623-48204642 | None:intergenic | 10.0% |
| !! | AAGCAAAATTTATTATATAA+TGG | + | chr5_4:48204624-48204643 | None:intergenic | 10.0% |
| !! | ATAGAATGTTAATTATCTTT+AGG | - | chr5_4:48202416-48202435 | Msa0855110:CDS | 15.0% |
| !!! | TAAAGATAATTTTGTCAAAA+CGG | + | chr5_4:48202445-48202464 | None:intergenic | 15.0% |
| !! | AAATTAAAACCATTAAAACA+TGG | + | chr5_4:48204287-48204306 | None:intergenic | 15.0% |
| !!! | TAATGGTTTTAATTTGAATT+CGG | - | chr5_4:48204292-48204311 | Msa0855110:intron | 15.0% |
| !! | CATTATCTTATTGTAAAATT+AGG | - | chr5_4:48204554-48204573 | Msa0855110:five_prime_UTR | 15.0% |
| !! | GATACTTGTATTATTATGTA+GGG | + | chr5_4:48200774-48200793 | None:intergenic | 20.0% |
| !! | AAAAATATGAAGATGTTGAA+GGG | + | chr5_4:48200796-48200815 | None:intergenic | 20.0% |
| !! | TAAAAATATGAAGATGTTGA+AGG | + | chr5_4:48200797-48200816 | None:intergenic | 20.0% |
| !!! | TGTCTTTTTTTCTTTATGAA+AGG | + | chr5_4:48201187-48201206 | None:intergenic | 20.0% |
| !! | AAATAAATGTTACATCAATG+TGG | + | chr5_4:48201756-48201775 | None:intergenic | 20.0% |
| !!! | AATTAACTTGCACATAATAA+TGG | - | chr5_4:48201971-48201990 | Msa0855110:CDS | 20.0% |
| !!! | CTACTTTAAAACTTTTTTGT+TGG | - | chr5_4:48202390-48202409 | Msa0855110:CDS | 20.0% |
| !! | AATCACTAAAGAAAATCTTA+AGG | - | chr5_4:48203292-48203311 | Msa0855110:CDS | 20.0% |
| ! | GGATACTTGTATTATTATGT+AGG | + | chr5_4:48200775-48200794 | None:intergenic | 25.0% |
| !! | ATACAAAAACAGCTGAATTT+TGG | + | chr5_4:48201003-48201022 | None:intergenic | 25.0% |
| !! | ATTATCTTTGAGAAACAACT+GGG | + | chr5_4:48201437-48201456 | None:intergenic | 25.0% |
| !! | TATTATCTTTGAGAAACAAC+TGG | + | chr5_4:48201438-48201457 | None:intergenic | 25.0% |
| !! | TTGTCTAAGTCTTTTCATTT+TGG | - | chr5_4:48201693-48201712 | Msa0855110:CDS | 25.0% |
| !! | TGTCTAAGTCTTTTCATTTT+GGG | - | chr5_4:48201694-48201713 | Msa0855110:CDS | 25.0% |
| ! | GACAATAATAAACACAAAAC+AGG | + | chr5_4:48201834-48201853 | None:intergenic | 25.0% |
| ! | TGTTTATTATTGTCAACATC+AGG | - | chr5_4:48201840-48201859 | Msa0855110:CDS | 25.0% |
| ! | GTTTATTATTGTCAACATCA+GGG | - | chr5_4:48201841-48201860 | Msa0855110:CDS | 25.0% |
| !!! | GTAATACATTTCTGCTTTTT+TGG | + | chr5_4:48202535-48202554 | None:intergenic | 25.0% |
| !! | TTGTTCGTATGCATTAATTT+TGG | + | chr5_4:48203069-48203088 | None:intergenic | 25.0% |
| ! | ATCCTTAGATTCAAGAAATA+TGG | - | chr5_4:48203169-48203188 | Msa0855110:intron | 25.0% |
| ! | ATCCATATTTCTTGAATCTA+AGG | + | chr5_4:48203174-48203193 | None:intergenic | 25.0% |
| !!! | TCTCTAGTTTTAAGTTATCA+AGG | + | chr5_4:48203796-48203815 | None:intergenic | 25.0% |
| ! | GATAATCTTAATGTAGAAGT+AGG | - | chr5_4:48203818-48203837 | Msa0855110:intron | 25.0% |
| !! | ATGCTTAAGCAACATTTTAT+AGG | - | chr5_4:48204106-48204125 | Msa0855110:intron | 25.0% |
| !! | TGCTTAAGCAACATTTTATA+GGG | - | chr5_4:48204107-48204126 | Msa0855110:intron | 25.0% |
| !!! | AAGTGATAACCATGTTTTAA+TGG | - | chr5_4:48204275-48204294 | Msa0855110:intron | 25.0% |
| ! | TAAAATACCGAGATTGAATT+TGG | - | chr5_4:48204400-48204419 | Msa0855110:intron | 25.0% |
| !! | TTTTGCTTTCTATGAAGAAA+AGG | - | chr5_4:48204636-48204655 | Msa0855110:five_prime_UTR | 25.0% |
| TTGTATTATTATGTAGGGTG+GGG | + | chr5_4:48200769-48200788 | None:intergenic | 30.0% | |
| CTTGTATTATTATGTAGGGT+GGG | + | chr5_4:48200770-48200789 | None:intergenic | 30.0% | |
| ACTTGTATTATTATGTAGGG+TGG | + | chr5_4:48200771-48200790 | None:intergenic | 30.0% | |
| AGTTTAGTTACCTGAAAGAA+AGG | + | chr5_4:48200940-48200959 | None:intergenic | 30.0% | |
| AAATGAAATCCCTTGTCATA+TGG | - | chr5_4:48201086-48201105 | Msa0855110:three_prime_UTR | 30.0% | |
| AGATAAGAACCATATGACAA+GGG | + | chr5_4:48201098-48201117 | None:intergenic | 30.0% | |
| AAGATAAGAACCATATGACA+AGG | + | chr5_4:48201099-48201118 | None:intergenic | 30.0% | |
| TTTGTCGAAAAATCCAAAAC+TGG | + | chr5_4:48201155-48201174 | None:intergenic | 30.0% | |
| ! | TTTCAACGCATTCTCTTTTT+CGG | - | chr5_4:48201509-48201528 | Msa0855110:CDS | 30.0% |
| AGACTTAGACAACAAACAAA+CGG | + | chr5_4:48201685-48201704 | None:intergenic | 30.0% | |
| AACTTGCACATAATAATGGT+TGG | - | chr5_4:48201975-48201994 | Msa0855110:CDS | 30.0% | |
| AATCAAGGAAATCACATTCT+TGG | - | chr5_4:48202046-48202065 | Msa0855110:CDS | 30.0% | |
| TATTACTTTAATGGCCTTCT+TGG | - | chr5_4:48202277-48202296 | Msa0855110:CDS | 30.0% | |
| ATTACTTTAATGGCCTTCTT+GGG | - | chr5_4:48202278-48202297 | Msa0855110:CDS | 30.0% | |
| AAACTCTTCAACTTGTATGT+CGG | - | chr5_4:48202322-48202341 | Msa0855110:CDS | 30.0% | |
| ATTATCTTTAACCTCAGAGA+TGG | - | chr5_4:48202455-48202474 | Msa0855110:CDS | 30.0% | |
| CAGAAATGTATTACAAGAAG+AGG | - | chr5_4:48202541-48202560 | Msa0855110:CDS | 30.0% | |
| ! | TTTGATTTCTTTCTTGGAAC+TGG | - | chr5_4:48202774-48202793 | Msa0855110:CDS | 30.0% |
| TCTGATATAAGCCAAAAAGA+CGG | - | chr5_4:48202807-48202826 | Msa0855110:CDS | 30.0% | |
| AAAAGAAAAACTTTGGACAC+AGG | - | chr5_4:48202974-48202993 | Msa0855110:intron | 30.0% | |
| !! | AATTTTGGCATAAACATCGT+CGG | + | chr5_4:48203054-48203073 | None:intergenic | 30.0% |
| GATTCAAGAAATATGGATGT+TGG | - | chr5_4:48203176-48203195 | Msa0855110:intron | 30.0% | |
| ATCTGAGGATTTATTTACCT+CGG | + | chr5_4:48203348-48203367 | None:intergenic | 30.0% | |
| !! | GAGGTTAAAGACTAGTTTAT+CGG | - | chr5_4:48203481-48203500 | Msa0855110:intron | 30.0% |
| !! | AGACTTCAAATTAGCTTTCT+CGG | + | chr5_4:48203570-48203589 | None:intergenic | 30.0% |
| ATGGAAGCAGAATTGAAAAA+TGG | - | chr5_4:48203707-48203726 | Msa0855110:intron | 30.0% | |
| AGTAGAAGAGATGAAAACAA+AGG | - | chr5_4:48203961-48203980 | Msa0855110:intron | 30.0% | |
| ! | AACATTTTATAGGGCATAAG+AGG | - | chr5_4:48204116-48204135 | Msa0855110:intron | 30.0% |
| ! | ACATTTTATAGGGCATAAGA+GGG | - | chr5_4:48204117-48204136 | Msa0855110:intron | 30.0% |
| AATTATTAGGCAGCCAAAAT+TGG | + | chr5_4:48204145-48204164 | None:intergenic | 30.0% | |
| CAGATTATAACAACAAGCAT+AGG | + | chr5_4:48204233-48204252 | None:intergenic | 30.0% | |
| TGTTGTTATAATCTGAGTCA+AGG | - | chr5_4:48204238-48204257 | Msa0855110:intron | 30.0% | |
| ACTAGTGTGGAATTTAAAAG+TGG | - | chr5_4:48204471-48204490 | Msa0855110:five_prime_UTR | 30.0% | |
| TCAAAGTTAGAAGCTTGATA+TGG | - | chr5_4:48204506-48204525 | Msa0855110:five_prime_UTR | 30.0% | |
| AGAAGCTTGATATGGATATA+AGG | - | chr5_4:48204514-48204533 | Msa0855110:five_prime_UTR | 30.0% | |
| ATATAGGAAAAGAAAGTGGC+CGG | + | chr5_4:48200744-48200763 | None:intergenic | 35.0% | |
| GGACATATAGGAAAAGAAAG+TGG | + | chr5_4:48200748-48200767 | None:intergenic | 35.0% | |
| ! | TCCTAAGAAAACACCAGTTT+TGG | - | chr5_4:48201139-48201158 | Msa0855110:three_prime_UTR | 35.0% |
| ! | TCCAAAACTGGTGTTTTCTT+AGG | + | chr5_4:48201143-48201162 | None:intergenic | 35.0% |
| !! | GTTGGCTGTTTTGTTATCTT+AGG | - | chr5_4:48201993-48202012 | Msa0855110:CDS | 35.0% |
| ATTCTAGCAAGCAAATGAAG+AGG | - | chr5_4:48202019-48202038 | Msa0855110:CDS | 35.0% | |
| AAATGAAGAGGTTGGAATCA+AGG | - | chr5_4:48202031-48202050 | Msa0855110:CDS | 35.0% | |
| AAGAGCCACTTAGAATTCTT+GGG | + | chr5_4:48202093-48202112 | None:intergenic | 35.0% | |
| AAAGAGCCACTTAGAATTCT+TGG | + | chr5_4:48202094-48202113 | None:intergenic | 35.0% | |
| ! | TGGCTCTTTGAAAATCTTGA+AGG | - | chr5_4:48202105-48202124 | Msa0855110:CDS | 35.0% |
| TTACTTTAATGGCCTTCTTG+GGG | - | chr5_4:48202279-48202298 | Msa0855110:CDS | 35.0% | |
| TCAACTTGTATGTCGGTAAT+TGG | - | chr5_4:48202329-48202348 | Msa0855110:CDS | 35.0% | |
| GCAATGGAGTTTCATAATTC+TGG | - | chr5_4:48202351-48202370 | Msa0855110:CDS | 35.0% | |
| ATTTCTTTCTTGGAACTGGT+GGG | - | chr5_4:48202778-48202797 | Msa0855110:CDS | 35.0% | |
| TGAATCATCAGATTCATCCT+CGG | + | chr5_4:48202862-48202881 | None:intergenic | 35.0% | |
| GGATGAATCTGATGATTCAT+CGG | - | chr5_4:48202863-48202882 | Msa0855110:CDS | 35.0% | |
| ACAATTATTCAGCTTTCTCG+CGG | - | chr5_4:48202889-48202908 | Msa0855110:CDS | 35.0% | |
| TTTATTCTTCTGTTCATCCC+TGG | + | chr5_4:48202927-48202946 | None:intergenic | 35.0% | |
| GAACAGAAGAATAAACGAGT+TGG | - | chr5_4:48202932-48202951 | Msa0855110:intron | 35.0% | |
| GCGAGGTAAAAGAAAAACTT+TGG | - | chr5_4:48202967-48202986 | Msa0855110:intron | 35.0% | |
| AGGTTTCAGTTTCATCTAGT+GGG | - | chr5_4:48203012-48203031 | Msa0855110:intron | 35.0% | |
| CTAAAAAGGATGTTGCTACT+TGG | - | chr5_4:48203402-48203421 | Msa0855110:intron | 35.0% | |
| ! | TCTTTTCTCGCTGTTGAATT+TGG | + | chr5_4:48203432-48203451 | None:intergenic | 35.0% |
| !! | TAAAGACTAGTTTATCGGAC+CGG | - | chr5_4:48203486-48203505 | Msa0855110:intron | 35.0% |
| !! | ACTTCAAATTAGCTTTCTCG+GGG | + | chr5_4:48203568-48203587 | None:intergenic | 35.0% |
| !! | GACTTCAAATTAGCTTTCTC+GGG | + | chr5_4:48203569-48203588 | None:intergenic | 35.0% |
| ! | GTCTGAAATGTCAAAGTTGT+TGG | - | chr5_4:48203586-48203605 | Msa0855110:intron | 35.0% |
| TCAATCCGAAAAGATAGAGA+TGG | - | chr5_4:48203688-48203707 | Msa0855110:intron | 35.0% | |
| ! | TGCTTCCATCTCTATCTTTT+CGG | + | chr5_4:48203696-48203715 | None:intergenic | 35.0% |
| CCATGTGTAATTCGTTCAAA+TGG | + | chr5_4:48203898-48203917 | None:intergenic | 35.0% | |
| CCATTTGAACGAATTACACA+TGG | - | chr5_4:48203895-48203914 | Msa0855110:intron | 35.0% | |
| ! | TGTACAACTGATTTCTGCAA+TGG | - | chr5_4:48203922-48203941 | Msa0855110:intron | 35.0% |
| ACGAAGTCCAAATTCAATCT+CGG | + | chr5_4:48204410-48204429 | None:intergenic | 35.0% | |
| GATATAAGGCAAGCTTGAAA+AGG | - | chr5_4:48204528-48204547 | Msa0855110:five_prime_UTR | 35.0% | |
| AGGACTGCATATTGATGTAA+AGG | - | chr5_4:48204574-48204593 | Msa0855110:five_prime_UTR | 35.0% | |
| ACTGCATATTGATGTAAAGG+AGG | - | chr5_4:48204577-48204596 | Msa0855110:five_prime_UTR | 35.0% | |
| CTGCATATTGATGTAAAGGA+GGG | - | chr5_4:48204578-48204597 | Msa0855110:five_prime_UTR | 35.0% | |
| TGAAGAAAAGGAGTTATGCT+TGG | - | chr5_4:48204648-48204667 | Msa0855110:five_prime_UTR | 35.0% | |
| GAAGAAAAGGAGTTATGCTT+GGG | - | chr5_4:48204649-48204668 | Msa0855110:five_prime_UTR | 35.0% | |
| TATAGGAAAAGAAAGTGGCC+GGG | + | chr5_4:48200743-48200762 | None:intergenic | 40.0% | |
| !! | GGTTTGGTTTGGTTTGTATG+TGG | + | chr5_4:48200835-48200854 | None:intergenic | 40.0% |
| TAAGCAATGGATCTAGGAAC+AGG | + | chr5_4:48200884-48200903 | None:intergenic | 40.0% | |
| AGAGGTTAAGCAATGGATCT+AGG | + | chr5_4:48200890-48200909 | None:intergenic | 40.0% | |
| ATGAAGTAGAAGAAGCTGAG+AGG | + | chr5_4:48200908-48200927 | None:intergenic | 40.0% | |
| TCCAAACACACCTTTCTTTC+AGG | - | chr5_4:48200927-48200946 | Msa0855110:three_prime_UTR | 40.0% | |
| ! | ACCTGAAAGAAAGGTGTGTT+TGG | + | chr5_4:48200931-48200950 | None:intergenic | 40.0% |
| ! | AAACGTGGTTGTTGACTAGT+TGG | + | chr5_4:48201362-48201381 | None:intergenic | 40.0% |
| ! | ACTAGTCAACAACCACGTTT+TGG | - | chr5_4:48201362-48201381 | Msa0855110:CDS | 40.0% |
| TGATTACGTGATATGACACG+TGG | - | chr5_4:48201390-48201409 | Msa0855110:CDS | 40.0% | |
| ! | AAGTCTTTTCATTTTGGGCC+TGG | - | chr5_4:48201699-48201718 | Msa0855110:CDS | 40.0% |
| ! | AGTCTTTTCATTTTGGGCCT+GGG | - | chr5_4:48201700-48201719 | Msa0855110:CDS | 40.0% |
| AATGTGGACCACACCTAAAT+GGG | + | chr5_4:48201740-48201759 | None:intergenic | 40.0% | |
| ATTGTCAACATCAGGGTTTG+AGG | - | chr5_4:48201848-48201867 | Msa0855110:CDS | 40.0% | |
| TAGCAAGCAAATGAAGAGGT+TGG | - | chr5_4:48202023-48202042 | Msa0855110:CDS | 40.0% | |
| CAAGGAAATCACATTCTTGG+TGG | - | chr5_4:48202049-48202068 | Msa0855110:CDS | 40.0% | |
| ! | GAAATCACATTCTTGGTGGT+GGG | - | chr5_4:48202053-48202072 | Msa0855110:CDS | 40.0% |
| TCAGTCCCAAGAATTCTAAG+TGG | - | chr5_4:48202085-48202104 | Msa0855110:CDS | 40.0% | |
| !! | TGAGTTTGTTAATGCATGCC+TGG | - | chr5_4:48202190-48202209 | Msa0855110:CDS | 40.0% |
| !! | GAGTTTGTTAATGCATGCCT+GGG | - | chr5_4:48202191-48202210 | Msa0855110:CDS | 40.0% |
| CTGTGAGATTGTCAGAATCA+CGG | - | chr5_4:48202218-48202237 | Msa0855110:CDS | 40.0% | |
| CAACTATACCAAAACTGCAG+AGG | + | chr5_4:48202248-48202267 | None:intergenic | 40.0% | |
| AATCACAAATCTCCCCAAGA+AGG | + | chr5_4:48202294-48202313 | None:intergenic | 40.0% | |
| TGTATGTCGGTAATTGGCAA+TGG | - | chr5_4:48202335-48202354 | Msa0855110:CDS | 40.0% | |
| TCAACATCCGTTTCACATTC+CGG | + | chr5_4:48202482-48202501 | None:intergenic | 40.0% | |
| GATGTTGAAGCTGATAGAAG+AGG | - | chr5_4:48202494-48202513 | Msa0855110:CDS | 40.0% | |
| TTACAAGAAGAGGCCAGAAT+TGG | - | chr5_4:48202551-48202570 | Msa0855110:CDS | 40.0% | |
| TCAACCAAAGCAACCAATTC+TGG | + | chr5_4:48202567-48202586 | None:intergenic | 40.0% | |
| AGTCACATGATCGTAACGTT+CGG | + | chr5_4:48202619-48202638 | None:intergenic | 40.0% | |
| ATCATGTGACTGGAGAATTG+CGG | - | chr5_4:48202628-48202647 | Msa0855110:CDS | 40.0% | |
| GATTTACGATGGGTCACATT+TGG | + | chr5_4:48202735-48202754 | None:intergenic | 40.0% | |
| ! | GCTGGGTTTGATTTCTTTCT+TGG | - | chr5_4:48202768-48202787 | Msa0855110:CDS | 40.0% |
| GATTTCTTTCTTGGAACTGG+TGG | - | chr5_4:48202777-48202796 | Msa0855110:CDS | 40.0% | |
| ! | ACTCATCTTCTCCGTCTTTT+TGG | + | chr5_4:48202821-48202840 | None:intergenic | 40.0% |
| AGATGAGTCCTCTACTATGA+CGG | - | chr5_4:48202833-48202852 | Msa0855110:CDS | 40.0% | |
| GAAAAACTTTGGACACAGGA+AGG | - | chr5_4:48202978-48202997 | Msa0855110:intron | 40.0% | |
| GAGGTTTCAGTTTCATCTAG+TGG | - | chr5_4:48203011-48203030 | Msa0855110:intron | 40.0% | |
| GGTTTCAGTTTCATCTAGTG+GGG | - | chr5_4:48203013-48203032 | Msa0855110:intron | 40.0% | |
| !! | TATGGATGTTGGTGTTGAGT+TGG | - | chr5_4:48203187-48203206 | Msa0855110:intron | 40.0% |
| AACTTCAAGAAAGACTTGCG+AGG | - | chr5_4:48203462-48203481 | Msa0855110:intron | 40.0% | |
| !! | AAAGACTAGTTTATCGGACC+GGG | - | chr5_4:48203487-48203506 | Msa0855110:intron | 40.0% |
| TTTCTGCTCAGCATCAGATA+CGG | + | chr5_4:48203540-48203559 | None:intergenic | 40.0% | |
| ACAGAGAGAGAACAGCATAA+AGG | - | chr5_4:48203757-48203776 | Msa0855110:intron | 40.0% | |
| TGTAGAAGTAGGTTCACTCA+AGG | - | chr5_4:48203829-48203848 | Msa0855110:intron | 40.0% | |
| ! | GCATAAGAGGGTTCCAATTT+TGG | - | chr5_4:48204129-48204148 | Msa0855110:intron | 40.0% |
| CAACAAGCATAGGACATTAC+AGG | + | chr5_4:48204223-48204242 | None:intergenic | 40.0% | |
| TAATGGGAGACAAAGAGTAG+TGG | + | chr5_4:48204607-48204626 | None:intergenic | 40.0% | |
| TATGTAGGGTGGGGACATAT+AGG | + | chr5_4:48200760-48200779 | None:intergenic | 45.0% | |
| TGGATCTAGGAACAGGAACA+GGG | + | chr5_4:48200877-48200896 | None:intergenic | 45.0% | |
| ATGGATCTAGGAACAGGAAC+AGG | + | chr5_4:48200878-48200897 | None:intergenic | 45.0% | |
| GAAGCTGAGAGGTTAAGCAA+TGG | + | chr5_4:48200897-48200916 | None:intergenic | 45.0% | |
| !!! | TCAACAACCACGTTTTGGAG+CGG | - | chr5_4:48201367-48201386 | Msa0855110:CDS | 45.0% |
| !! | AGAAGTGCGTGAGTTTTGCT+TGG | + | chr5_4:48201645-48201664 | None:intergenic | 45.0% |
| ! | TTTTCATTTTGGGCCTGGGT+CGG | - | chr5_4:48201704-48201723 | Msa0855110:CDS | 45.0% |
| GAATACAGCCCATTTAGGTG+TGG | - | chr5_4:48201729-48201748 | Msa0855110:CDS | 45.0% | |
| CAATGTGGACCACACCTAAA+TGG | + | chr5_4:48201741-48201760 | None:intergenic | 45.0% | |
| TCTGGAAAATGGCTGCTTCT+GGG | - | chr5_4:48201888-48201907 | Msa0855110:CDS | 45.0% | |
| !! | TGCTTCTGGGGTAAGTGTTA+TGG | - | chr5_4:48201901-48201920 | Msa0855110:CDS | 45.0% |
| GGAAATCACATTCTTGGTGG+TGG | - | chr5_4:48202052-48202071 | Msa0855110:CDS | 45.0% | |
| GACAATCTCACAGTAAACCC+AGG | + | chr5_4:48202211-48202230 | None:intergenic | 45.0% | |
| CTTTAACCTCAGAGATGGAC+CGG | - | chr5_4:48202460-48202479 | Msa0855110:CDS | 45.0% | |
| AGATGGACCGGAATGTGAAA+CGG | - | chr5_4:48202472-48202491 | Msa0855110:CDS | 45.0% | |
| TTGGTTGAAGAGTTCTACCG+TGG | - | chr5_4:48202579-48202598 | Msa0855110:CDS | 45.0% | |
| GAACGTTACGATCATGTGAC+TGG | - | chr5_4:48202618-48202637 | Msa0855110:CDS | 45.0% | |
| CAATCTGATCTCCAATCCCA+AGG | - | chr5_4:48202660-48202679 | Msa0855110:CDS | 45.0% | |
| TTTGGAGAGGGCAAAGTTGA+GGG | + | chr5_4:48202717-48202736 | None:intergenic | 45.0% | |
| ATTTGGAGAGGGCAAAGTTG+AGG | + | chr5_4:48202718-48202737 | None:intergenic | 45.0% | |
| CCGGTTGCTTGATTTACGAT+GGG | + | chr5_4:48202745-48202764 | None:intergenic | 45.0% | |
| CCCATCGTAAATCAAGCAAC+CGG | - | chr5_4:48202742-48202761 | Msa0855110:CDS | 45.0% | |
| CCATCGTAAATCAAGCAACC+GGG | - | chr5_4:48202743-48202762 | Msa0855110:CDS | 45.0% | |
| GATGAGTCCTCTACTATGAC+GGG | - | chr5_4:48202834-48202853 | Msa0855110:CDS | 45.0% | |
| TATTCAGCTTTCTCGCGGAA+TGG | - | chr5_4:48202894-48202913 | Msa0855110:CDS | 45.0% | |
| !! | GGTGTTGAGTTGGAAGTTGA+AGG | - | chr5_4:48203197-48203216 | Msa0855110:intron | 45.0% |
| !! | GAAGTTGAAGGAAGCATCGA+TGG | - | chr5_4:48203209-48203228 | Msa0855110:intron | 45.0% |
| !! | AAGCATCGATGGTGTGGATA+AGG | - | chr5_4:48203220-48203239 | Msa0855110:intron | 45.0% |
| AAGGAATTGTTCGAGCCAAG+TGG | - | chr5_4:48203239-48203258 | Msa0855110:intron | 45.0% | |
| CAGTGAAGCAACTTGCGTTT+CGG | + | chr5_4:48203321-48203340 | None:intergenic | 45.0% | |
| AGTTGCTTCACTGAAAACCG+AGG | - | chr5_4:48203328-48203347 | Msa0855110:CDS | 45.0% | |
| CAGCTGCTGAATTCTATCTG+AGG | + | chr5_4:48203363-48203382 | None:intergenic | 45.0% | |
| AGATAGAATTCAGCAGCTGC+AGG | - | chr5_4:48203364-48203383 | Msa0855110:CDS | 45.0% | |
| !! | TCAGCTTGACTCGGCTAAAA+AGG | - | chr5_4:48203388-48203407 | Msa0855110:intron | 45.0% |
| TGAAAGAGCTGATCAGAGAG+TGG | - | chr5_4:48203624-48203643 | Msa0855110:intron | 45.0% | |
| GAAAGAGCTGATCAGAGAGT+GGG | - | chr5_4:48203625-48203644 | Msa0855110:intron | 45.0% | |
| AGTAGGTTCACTCAAGGAAG+AGG | - | chr5_4:48203835-48203854 | Msa0855110:intron | 45.0% | |
| GAAGAGGTGAACTCAAGAGA+CGG | - | chr5_4:48203851-48203870 | Msa0855110:intron | 45.0% | |
| AACTCAAGAGACGGTAGGAT+CGG | - | chr5_4:48203860-48203879 | Msa0855110:intron | 45.0% | |
| AACAAAGGCGAAGAAACTCG+AGG | - | chr5_4:48203976-48203995 | Msa0855110:intron | 45.0% | |
| ATGCAGGATCTATCACAGCA+GGG | + | chr5_4:48204321-48204340 | None:intergenic | 45.0% | |
| AATGCAGGATCTATCACAGC+AGG | + | chr5_4:48204322-48204341 | None:intergenic | 45.0% | |
| AGATCCTGCATTCACGCATT+CGG | - | chr5_4:48204330-48204349 | Msa0855110:intron | 45.0% | |
| CATCAGTGGTCGTTTGATCT+TGG | - | chr5_4:48204355-48204374 | Msa0855110:intron | 45.0% | |
| TCATAGATTCCCCGCATTCA+CGG | + | chr5_4:48204452-48204471 | None:intergenic | 45.0% | |
| !! | GATAATATAATAATATAAAA+TGG | - | chr5_4:48201451-48201470 | Msa0855110:CDS | 5.0% |
| ! | GAGGAGAGAGAGGTTTGGTT+TGG | + | chr5_4:48200846-48200865 | None:intergenic | 50.0% |
| GACTTGAGGAGAGAGAGGTT+TGG | + | chr5_4:48200851-48200870 | None:intergenic | 50.0% | |
| GTAATCACCGCTCCAAAACG+TGG | + | chr5_4:48201377-48201396 | None:intergenic | 50.0% | |
| CGGTGGAATACAGCCCATTT+AGG | - | chr5_4:48201724-48201743 | Msa0855110:CDS | 50.0% | |
| GTCAACATCAGGGTTTGAGG+AGG | - | chr5_4:48201851-48201870 | Msa0855110:CDS | 50.0% | |
| ACATCAGGGTTTGAGGAGGT+AGG | - | chr5_4:48201855-48201874 | Msa0855110:CDS | 50.0% | |
| !! | GTGGTTGCTGCTCTGGAAAA+TGG | - | chr5_4:48201877-48201896 | Msa0855110:CDS | 50.0% |
| ! | CTCTGGAAAATGGCTGCTTC+TGG | - | chr5_4:48201887-48201906 | Msa0855110:CDS | 50.0% |
| CTGGAAAATGGCTGCTTCTG+GGG | - | chr5_4:48201889-48201908 | Msa0855110:CDS | 50.0% | |
| GAGGCCAGAATTGGTTGCTT+TGG | - | chr5_4:48202560-48202579 | Msa0855110:CDS | 50.0% | |
| CTACCGTGGTTACCGATCAT+TGG | - | chr5_4:48202593-48202612 | Msa0855110:CDS | 50.0% | |
| CGTAACGTTCGGCCAATGAT+CGG | + | chr5_4:48202608-48202627 | None:intergenic | 50.0% | |
| TGATCTCCAATCCCAAGGCT+CGG | - | chr5_4:48202665-48202684 | Msa0855110:CDS | 50.0% | |
| AAAAACCCGAGCCTTGGGAT+TGG | + | chr5_4:48202674-48202693 | None:intergenic | 50.0% | |
| GTCTGAAAAACCCGAGCCTT+GGG | + | chr5_4:48202679-48202698 | None:intergenic | 50.0% | |
| TGTCTGAAAAACCCGAGCCT+TGG | + | chr5_4:48202680-48202699 | None:intergenic | 50.0% | |
| CGATGGGTCACATTTGGAGA+GGG | + | chr5_4:48202729-48202748 | None:intergenic | 50.0% | |
| ACGATGGGTCACATTTGGAG+AGG | + | chr5_4:48202730-48202749 | None:intergenic | 50.0% | |
| CCCGGTTGCTTGATTTACGA+TGG | + | chr5_4:48202746-48202765 | None:intergenic | 50.0% | |
| AGAAATCAAACCCAGCAGCC+CGG | + | chr5_4:48202764-48202783 | None:intergenic | 50.0% | |
| GTTGGAAAATGAACTGCGCG+AGG | - | chr5_4:48202950-48202969 | Msa0855110:intron | 50.0% | |
| ACAGGAAGGTGAACATGCAG+AGG | - | chr5_4:48202992-48203011 | Msa0855110:intron | 50.0% | |
| !! | TGAAGGAAGCATCGATGGTG+TGG | - | chr5_4:48203214-48203233 | Msa0855110:intron | 50.0% |
| AGTCCCTGATCTCATGATCC+CGG | + | chr5_4:48203508-48203527 | None:intergenic | 50.0% | |
| GCTCTTCAAATGATCGACCG+CGG | + | chr5_4:48203655-48203674 | None:intergenic | 50.0% | |
| AGGTGAACTCAAGAGACGGT+AGG | - | chr5_4:48203855-48203874 | Msa0855110:intron | 50.0% | |
| GAAGAAACTCGAGGAACAGG+TGG | - | chr5_4:48203985-48204004 | Msa0855110:intron | 50.0% | |
| GATCCTGCATTCACGCATTC+GGG | - | chr5_4:48204331-48204350 | Msa0855110:intron | 50.0% | |
| CGGGGAATCTATGACTAGTG+TGG | - | chr5_4:48204458-48204477 | Msa0855110:five_prime_UTR | 50.0% | |
| AAGAAAGTGGCCGGGAAGGA+AGG | + | chr5_4:48200735-48200754 | None:intergenic | 55.0% | |
| GGAAAAGAAAGTGGCCGGGA+AGG | + | chr5_4:48200739-48200758 | None:intergenic | 55.0% | |
| GGAGAGACTTGAGGAGAGAG+AGG | + | chr5_4:48200856-48200875 | None:intergenic | 55.0% | |
| CAGGAACAGGGAGAGACTTG+AGG | + | chr5_4:48200865-48200884 | None:intergenic | 55.0% | |
| TCAGGGTTTGAGGAGGTAGG+TGG | - | chr5_4:48201858-48201877 | Msa0855110:CDS | 55.0% | |
| ! | ACGGTGAGCCTCTGCAGTTT+TGG | - | chr5_4:48202237-48202256 | Msa0855110:CDS | 55.0% |
| CACATTCCGGTCCATCTCTG+AGG | + | chr5_4:48202469-48202488 | None:intergenic | 55.0% | |
| CGGCCAATGATCGGTAACCA+CGG | + | chr5_4:48202599-48202618 | None:intergenic | 55.0% | |
| GATCTCCAATCCCAAGGCTC+GGG | - | chr5_4:48202666-48202685 | Msa0855110:CDS | 55.0% | |
| !! | GGCTCGGGTTTTTCAGACAC+TGG | - | chr5_4:48202681-48202700 | Msa0855110:CDS | 55.0% |
| AAATCAAGCAACCGGGCTGC+TGG | - | chr5_4:48202750-48202769 | Msa0855110:CDS | 55.0% | |
| AATCAAGCAACCGGGCTGCT+GGG | - | chr5_4:48202751-48202770 | Msa0855110:CDS | 55.0% | |
| CTCGGAACCCGTCATAGTAG+AGG | + | chr5_4:48202844-48202863 | None:intergenic | 55.0% | |
| !! | CTCTACTATGACGGGTTCCG+AGG | - | chr5_4:48202842-48202861 | Msa0855110:CDS | 55.0% |
| !! | TCGCGGAATGGTACTGATCC+AGG | - | chr5_4:48202906-48202925 | Msa0855110:CDS | 55.0% |
| !! | CGCGGAATGGTACTGATCCA+GGG | - | chr5_4:48202907-48202926 | Msa0855110:CDS | 55.0% |
| AGTGAGGCTGTGTCACCACT+TGG | + | chr5_4:48203257-48203276 | None:intergenic | 55.0% | |
| AGTGGTGACACAGCCTCACT+CGG | - | chr5_4:48203257-48203276 | Msa0855110:intron | 55.0% | |
| GCTGCAGGATCAGCTTGACT+CGG | - | chr5_4:48203379-48203398 | Msa0855110:intron | 55.0% | |
| GGACCGGGATCATGAGATCA+GGG | - | chr5_4:48203502-48203521 | Msa0855110:exon | 55.0% | |
| ATCAGAGAGTGGGAAAGCCG+CGG | - | chr5_4:48203635-48203654 | Msa0855110:intron | 55.0% | |
| GGCGAAGAAACTCGAGGAAC+AGG | - | chr5_4:48203982-48204001 | Msa0855110:intron | 55.0% | |
| AACTCGAGGAACAGGTGGAG+AGG | - | chr5_4:48203990-48204009 | Msa0855110:intron | 55.0% | |
| TGTCCCGAATGCGTGAATGC+AGG | + | chr5_4:48204337-48204356 | None:intergenic | 55.0% | |
| TCACGCATTCGGGACATCAG+TGG | - | chr5_4:48204341-48204360 | Msa0855110:intron | 55.0% | |
| ATTCCCCGCATTCACGGAGT+CGG | + | chr5_4:48204446-48204465 | None:intergenic | 55.0% | |
| ! | TCATTTTGGGCCTGGGTCGG+TGG | - | chr5_4:48201707-48201726 | Msa0855110:CDS | 60.0% |
| GAGGTAGGTGGTTGCTGCTC+TGG | - | chr5_4:48201870-48201889 | Msa0855110:CDS | 60.0% | |
| GGAGAGGGCAAAGTTGAGGG+CGG | + | chr5_4:48202714-48202733 | None:intergenic | 60.0% | |
| GTGGTGACACAGCCTCACTC+GGG | - | chr5_4:48203258-48203277 | Msa0855110:intron | 60.0% | |
| TGGTGACACAGCCTCACTCG+GGG | - | chr5_4:48203259-48203278 | Msa0855110:intron | 60.0% | |
| CGGACCGGGATCATGAGATC+AGG | - | chr5_4:48203501-48203520 | Msa0855110:exon | 60.0% | |
| ! | AGCAGCTGAAGAGAAGCGCG+AGG | - | chr5_4:48204033-48204052 | Msa0855110:intron | 60.0% |
| ! | AAGAGAAGCGCGAGGCGATC+AGG | - | chr5_4:48204041-48204060 | Msa0855110:intron | 60.0% |
| CTGTCCCGACTCCGTGAATG+CGG | - | chr5_4:48204438-48204457 | Msa0855110:intron | 60.0% | |
| TGTCCCGACTCCGTGAATGC+GGG | - | chr5_4:48204439-48204458 | Msa0855110:intron | 60.0% | |
| TTCCCCGCATTCACGGAGTC+GGG | + | chr5_4:48204445-48204464 | None:intergenic | 60.0% | |
| GGGCTGTATTCCACCGACCC+AGG | + | chr5_4:48201720-48201739 | None:intergenic | 65.0% | |
| TGACACAGCCTCACTCGGGG+AGG | - | chr5_4:48203262-48203281 | Msa0855110:intron | 65.0% | |
| TCGAAGCTCCTCCCCGAGTG+AGG | + | chr5_4:48203273-48203292 | None:intergenic | 65.0% | |
| GTCCCGACTCCGTGAATGCG+GGG | - | chr5_4:48204440-48204459 | Msa0855110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 48200725 | 48204674 | 48200725 | ID=Msa0855110;Name=Msa0855110 |
| chr5_4 | mRNA | 48200725 | 48204674 | 48200725 | ID=Msa0855110-mRNA-1;Parent=Msa0855110;Name=Msa0855110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=258|1|1|1|0.66|0.5|4|515|604 |
| chr5_4 | exon | 48200725 | 48202927 | 48200725 | ID=Msa0855110-mRNA-1:exon:15195;Parent=Msa0855110-mRNA-1 |
| chr5_4 | exon | 48203273 | 48203384 | 48203273 | ID=Msa0855110-mRNA-1:exon:15194;Parent=Msa0855110-mRNA-1 |
| chr5_4 | exon | 48203489 | 48203537 | 48203489 | ID=Msa0855110-mRNA-1:exon:15193;Parent=Msa0855110-mRNA-1 |
| chr5_4 | exon | 48204451 | 48204674 | 48204451 | ID=Msa0855110-mRNA-1:exon:15192;Parent=Msa0855110-mRNA-1 |
| chr5_4 | five_prime_UTR | 48204451 | 48204674 | 48204451 | ID=Msa0855110-mRNA-1:five_prime_utr;Parent=Msa0855110-mRNA-1 |
| chr5_4 | five_prime_UTR | 48203504 | 48203537 | 48203504 | ID=Msa0855110-mRNA-1:five_prime_utr;Parent=Msa0855110-mRNA-1 |
| chr5_4 | CDS | 48203489 | 48203503 | 48203489 | ID=Msa0855110-mRNA-1:cds;Parent=Msa0855110-mRNA-1 |
| chr5_4 | CDS | 48203273 | 48203384 | 48203273 | ID=Msa0855110-mRNA-1:cds;Parent=Msa0855110-mRNA-1 |
| chr5_4 | CDS | 48201240 | 48202927 | 48201240 | ID=Msa0855110-mRNA-1:cds;Parent=Msa0855110-mRNA-1 |
| chr5_4 | three_prime_UTR | 48200725 | 48201239 | 48200725 | ID=Msa0855110-mRNA-1:three_prime_utr;Parent=Msa0855110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
