AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0778480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778480 MtrunA17_Chr5g0434531 98.561 278 4 0 1 278 1 278 0.0 554
Msa0778480 MtrunA17_Chr3g0110311 64.769 281 91 3 1 278 1 276 1.16e-122 351
Msa0778480 MtrunA17_Chr8g0391511 50.958 261 121 2 23 276 27 287 6.99e-92 273
Msa0778480 MtrunA17_Chr7g0230381 41.923 260 143 7 1 256 14 269 4.44e-63 199
Msa0778480 MtrunA17_Chr1g0168311 31.469 286 179 8 6 276 6 289 7.94e-28 108
Msa0778480 MtrunA17_Chr1g0190321 31.615 291 171 14 8 278 10 292 1.17e-26 105
Msa0778480 MtrunA17_Chr1g0186151 29.329 283 178 7 13 276 18 297 2.79e-26 105
Msa0778480 MtrunA17_Chr7g0262011 27.465 284 182 8 5 277 85 355 1.18e-25 103
Msa0778480 MtrunA17_Chr2g0323011 28.571 231 154 2 8 227 9 239 5.58e-23 94.7
Msa0778480 MtrunA17_Chr2g0322981 27.966 236 158 5 3 227 5 239 5.21e-22 92.0
Msa0778480 MtrunA17_Chr1g0206331 26.820 261 145 6 7 236 11 256 1.64e-21 94.0
Msa0778480 MtrunA17_Chr5g0394001 28.929 280 167 8 13 269 15 285 2.08e-19 87.8
Msa0778480 MtrunA17_Chr6g0474871 28.980 245 147 8 4 226 3 242 9.31e-19 86.3
Msa0778480 MtrunA17_Chr1g0206351 28.111 217 137 4 28 227 34 248 1.26e-18 85.5
Msa0778480 MtrunA17_Chr3g0081001 26.360 239 154 5 1 226 10 239 1.97e-18 85.1
Msa0778480 MtrunA17_Chr6g0474901 26.126 222 124 3 33 226 28 237 2.61e-18 84.7
Msa0778480 MtrunA17_Chr3g0081031 25.630 238 158 4 6 228 21 254 1.13e-17 82.8
Msa0778480 MtrunA17_Chr6g0475001 26.667 240 157 6 6 226 5 244 5.15e-17 80.9
Msa0778480 MtrunA17_Chr6g0475201 25.726 241 160 4 5 226 3 243 7.67e-17 80.5
Msa0778480 MtrunA17_Chr8g0354351 23.051 295 202 6 3 277 5 294 7.79e-17 80.1
Msa0778480 MtrunA17_Chr6g0474971 26.538 260 169 7 4 246 3 257 8.58e-17 79.0
Msa0778480 MtrunA17_Chr1g0206361 25.379 264 174 8 23 266 31 291 2.78e-16 78.6
Msa0778480 MtrunA17_Chr8g0354341 24.312 218 152 3 22 226 22 239 4.26e-16 76.3
Msa0778480 MtrunA17_Chr3g0081011 25.616 203 138 3 34 226 39 238 4.84e-16 77.8
Msa0778480 MtrunA17_Chr7g0234231 27.273 198 121 5 46 227 42 232 7.09e-16 75.5
Msa0778480 MtrunA17_Chr8g0347571 25.000 236 167 3 1 226 1 236 7.29e-16 77.4
Msa0778480 MtrunA17_Chr1g0205771 22.876 306 207 8 1 278 7 311 1.00e-15 77.0
Msa0778480 MtrunA17_Chr3g0081051 24.138 232 164 3 9 228 5 236 1.50e-15 74.7
Msa0778480 MtrunA17_Chr6g0474861 25.581 215 142 6 2 204 6 214 1.72e-15 76.3
Msa0778480 MtrunA17_Chr6g0474811 25.714 245 158 6 4 226 3 245 5.26e-15 75.1
Msa0778480 MtrunA17_Chr1g0206291 25.207 242 157 6 7 227 21 259 5.93e-15 74.7
Msa0778480 MtrunA17_Chr8g0354421 26.906 223 147 5 3 211 28 248 8.18e-15 74.3
Msa0778480 MtrunA17_Chr1g0154351 27.459 244 149 9 7 228 10 247 1.52e-14 73.6
Msa0778480 MtrunA17_Chr5g0393981 28.272 191 108 3 38 207 113 295 3.90e-14 72.4
Msa0778480 MtrunA17_Chr5g0428591 26.341 205 132 4 38 227 39 239 4.06e-14 70.9
Msa0778480 MtrunA17_Chr7g0226901 28.085 235 145 9 6 228 10 232 5.18e-14 70.5
Msa0778480 MtrunA17_Chr5g0428571 26.214 206 133 4 38 228 40 241 1.88e-13 70.1
Msa0778480 MtrunA17_Chr6g0475121 25.758 198 126 5 20 204 272 461 2.29e-12 67.0
Msa0778480 MtrunA17_Chr6g0475121 25.424 236 155 4 7 226 14 244 1.26e-11 64.7
Msa0778480 MtrunA17_Chr6g0475111 25.103 243 165 3 1 226 4 246 4.89e-12 66.2
Msa0778480 MtrunA17_Chr8g0354411 25.728 206 125 5 27 211 28 226 7.29e-12 64.7
Msa0778480 MtrunA17_Chr5g0394021 23.826 298 186 8 1 273 10 291 8.65e-12 65.1
Msa0778480 MtrunA17_Chr8g0354431 24.670 227 149 8 2 211 5 226 1.35e-11 64.7
Msa0778480 MtrunA17_Chr3g0109411 25.000 224 152 5 17 227 18 238 1.93e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778480 AT5G37660.1 58.929 280 113 2 1 278 9 288 1.38e-109 318
Msa0778480 AT5G37660.2 58.781 279 113 2 1 277 9 287 1.12e-108 317
Msa0778480 AT2G01660.3 52.330 279 124 4 6 275 5 283 3.54e-98 290
Msa0778480 AT2G01660.1 52.330 279 124 4 6 275 5 283 4.76e-98 289
Msa0778480 AT2G01660.2 55.000 240 104 3 6 241 5 244 3.12e-90 268
Msa0778480 AT1G70690.1 43.262 282 147 4 7 275 10 291 7.04e-73 226
Msa0778480 AT3G60720.3 38.281 256 152 3 25 275 26 280 7.75e-57 184
Msa0778480 AT3G60720.1 38.824 255 146 4 25 274 26 275 1.21e-56 183
Msa0778480 AT3G60720.2 38.356 219 130 2 25 238 26 244 9.65e-50 164
Msa0778480 AT2G33330.1 27.645 293 193 5 1 276 10 300 6.60e-25 101
Msa0778480 AT1G04520.1 28.105 306 182 8 2 276 5 303 3.79e-24 99.4
Msa0778480 AT5G43980.1 28.102 274 175 6 26 278 27 299 1.98e-19 86.3
Msa0778480 AT5G48540.1 27.053 207 136 3 34 226 30 235 8.34e-19 84.0
Msa0778480 AT1G63550.1 26.570 207 135 4 38 229 42 246 5.52e-17 79.7
Msa0778480 AT3G58310.1 28.326 233 151 6 18 236 28 258 1.56e-16 77.8
Msa0778480 AT3G22060.1 30.000 220 133 7 23 226 29 243 1.14e-15 75.1
Msa0778480 AT1G63580.1 25.210 238 153 7 44 258 37 272 2.29e-15 74.7
Msa0778480 AT4G05200.1 25.941 239 162 4 4 227 5 243 3.48e-15 75.9
Msa0778480 AT4G05200.2 25.941 239 162 4 4 227 23 261 3.52e-15 75.9
Msa0778480 AT5G41290.1 23.695 249 156 7 3 228 6 243 2.99e-14 71.6
Msa0778480 AT1G63570.3 25.630 238 150 6 9 228 13 241 4.91e-14 70.9
Msa0778480 AT1G63570.1 25.630 238 150 6 9 228 13 241 4.91e-14 70.9
Msa0778480 AT5G41300.1 23.109 238 162 5 8 226 10 245 5.57e-14 70.9
Msa0778480 AT4G23280.2 26.800 250 152 9 18 242 18 261 6.53e-14 72.0
Msa0778480 AT4G23280.1 26.800 250 152 9 18 242 18 261 6.79e-14 72.0
Msa0778480 AT1G63570.2 26.027 219 139 5 28 228 81 294 7.41e-14 70.9
Msa0778480 AT4G23280.3 26.800 250 152 9 18 242 18 261 8.93e-14 71.6
Msa0778480 AT5G40380.3 27.622 286 164 12 3 267 8 271 9.67e-14 71.2
Msa0778480 AT5G40380.2 27.622 286 164 12 3 267 8 271 1.17e-13 71.2
Msa0778480 AT5G40380.1 28.322 286 162 13 3 267 8 271 1.23e-13 71.2
Msa0778480 AT1G63600.1 22.807 228 156 4 17 226 26 251 2.35e-13 69.7
Msa0778480 AT4G23310.1 28.509 228 144 6 28 239 28 252 3.16e-13 70.1
Msa0778480 AT4G23310.2 28.755 233 145 7 28 244 28 255 4.76e-13 69.3
Msa0778480 AT1G61750.1 21.661 277 178 6 28 267 29 303 8.53e-13 68.2
Msa0778480 AT4G23270.3 27.239 268 160 10 1 242 1 259 2.30e-12 67.4
Msa0778480 AT4G23270.2 27.239 268 160 10 1 242 1 259 2.41e-12 67.4
Msa0778480 AT4G23270.1 27.239 268 160 10 1 242 1 259 2.41e-12 67.4
Msa0778480 AT3G21970.1 26.778 239 142 9 7 221 13 242 3.42e-12 65.5
Msa0778480 AT4G23180.3 29.703 202 113 8 28 208 39 232 5.99e-12 65.9
Msa0778480 AT4G23180.2 29.703 202 113 8 28 208 39 232 7.60e-12 65.9
Msa0778480 AT4G23180.1 29.703 202 113 8 28 208 39 232 1.03e-11 65.5
Msa0778480 AT4G23160.3 25.714 210 119 7 22 205 619 817 1.45e-11 65.1
Msa0778480 AT4G23160.2 25.714 210 119 7 22 205 619 817 1.45e-11 65.1
Msa0778480 AT4G23160.1 25.714 210 119 7 22 205 39 237 3.80e-11 63.5
Msa0778480 AT4G21230.1 25.688 218 128 6 38 235 41 244 6.39e-11 63.2
Msa0778480 AT4G23170.1 26.977 215 117 10 38 226 39 239 8.49e-11 61.6

Find 109 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATTTGAAAGAGAAAA+AGG 0.150089 5_2:-58983012 None:intergenic
TCTCTTGAGCCCATGGCTTC+TGG 0.211124 5_2:-58981569 None:intergenic
ATTCTGATAAGGAAAGAAAA+AGG 0.268146 5_2:-58981160 None:intergenic
TGGATGGCTTGCAGGAAAAT+TGG 0.277770 5_2:+58982598 Msa0778480:intron
CCCGAACCACCAACCCTAAA+AGG 0.278748 5_2:-58981626 None:intergenic
TTTCATTCTAAGCAAATCAT+AGG 0.285670 5_2:+58981014 Msa0778480:five_prime_UTR
ATTAAGTTTGTGACACTTAG+TGG 0.319778 5_2:+58982897 Msa0778480:three_prime_UTR
CTTTCTTGAGCAAGATTTGT+AGG 0.320370 5_2:+58982696 Msa0778480:CDS
TGTACTGGGGATCTTAGTTT+CGG 0.327282 5_2:+58981671 Msa0778480:CDS
CGTGGTGTTGCCCAGTGTAC+TGG 0.330162 5_2:+58981656 Msa0778480:CDS
GCTGTGCTTGGCGGGCTTGT+GGG 0.336921 5_2:+58981593 Msa0778480:CDS
GTACTGGGGATCTTAGTTTC+GGG 0.339246 5_2:+58981672 Msa0778480:CDS
CTTGGCGGGCTTGTGGGCTT+AGG 0.343952 5_2:+58981599 Msa0778480:CDS
GATTGTGGTACTGCAGATTA+TGG 0.358387 5_2:+58981740 Msa0778480:CDS
GCACGCGCTGTCACACGTGC+TGG 0.363096 5_2:+58981410 Msa0778480:CDS
AAGAGATTTGCATTAATCAT+TGG 0.369856 5_2:+58982635 Msa0778480:CDS
GAATGAAAACTTTGAACAAT+GGG 0.370147 5_2:-58980999 None:intergenic
CAAGAGATGCTGTGCTTGGC+GGG 0.375041 5_2:+58981585 Msa0778480:CDS
GATTATGGAGATTTGTTCTT+GGG 0.375248 5_2:+58981755 Msa0778480:CDS
TGCTGTGCTTGGCGGGCTTG+TGG 0.384762 5_2:+58981592 Msa0778480:CDS
ACCCAACAAGACATAATATA+TGG 0.390192 5_2:+58981335 Msa0778480:CDS
AGCAATGAGAATAACAAGTA+TGG 0.392517 5_2:-58982675 None:intergenic
TTTGACTCGTAGGGTGAGTT+TGG 0.395292 5_2:-58981236 None:intergenic
GGCCATATATTATGTCTTGT+TGG 0.396998 5_2:-58981337 None:intergenic
ACCACAAACCTCTACCTATA+CGG 0.397734 5_2:+58981188 Msa0778480:CDS
TTAATCATTGGTTTATTAGC+AGG 0.406034 5_2:+58982647 Msa0778480:CDS
GGTGCAGCTGGACGGTTGTT+TGG 0.406253 5_2:+58981463 Msa0778480:CDS
GCCATATATTATGTCTTGTT+GGG 0.409991 5_2:-58981336 None:intergenic
GGTCGCCACGGCATTGATAT+AGG 0.413623 5_2:-58981358 None:intergenic
TCAAGAGATGCTGTGCTTGG+CGG 0.415902 5_2:+58981584 Msa0778480:CDS
TTTAAAATTGAATTCAAAAG+AGG 0.419428 5_2:+58983029 Msa0778480:three_prime_UTR
AGATTATGGAGATTTGTTCT+TGG 0.419653 5_2:+58981754 Msa0778480:CDS
GGCGGGCTTGTGGGCTTAGG+TGG 0.428475 5_2:+58981602 Msa0778480:CDS
AGATTAAAGACCTATGAGTA+TGG 0.432343 5_2:-58980975 None:intergenic
TGGGGCCCATGATACGTCTA+AGG 0.432532 5_2:+58981805 Msa0778480:CDS
AATTGCACAACTTTGTAAAG+TGG 0.436760 5_2:-58983169 None:intergenic
CACGCGCTGTCACACGTGCT+GGG 0.445092 5_2:+58981411 Msa0778480:CDS
TGTGGTTGATGATTCTGATA+AGG 0.461928 5_2:-58981171 None:intergenic
GCGGGCTTGTGGGCTTAGGT+GGG 0.463008 5_2:+58981603 Msa0778480:CDS
GTGTGGCGGCACGGTGCAGC+TGG 0.464456 5_2:+58981451 Msa0778480:CDS
GTGGTGTTGCCCAGTGTACT+GGG 0.465182 5_2:+58981657 Msa0778480:CDS
TACAACAACTTCACCGTCCT+AGG 0.469752 5_2:+58981308 Msa0778480:CDS
GCAGGAAAATTGGGTATAGT+AGG 0.470565 5_2:+58982608 Msa0778480:intron
CATGGGCCTTAGACGTATCA+TGG 0.471929 5_2:-58981811 None:intergenic
GTGAGGTGAGGAGTGAATTG+AGG 0.473079 5_2:-58981259 None:intergenic
GGATGGCTTGCAGGAAAATT+GGG 0.474228 5_2:+58982599 Msa0778480:intron
TATGTTATATTATATGCATA+TGG 0.475621 5_2:-58981054 None:intergenic
TGTCTTGTTGGGTGGACCCT+AGG 0.483605 5_2:-58981325 None:intergenic
GGCTCAAGAGATGCTGTGCT+TGG 0.485910 5_2:+58981581 Msa0778480:CDS
AGAATGAAAACTTTGAACAA+TGG 0.493470 5_2:-58981000 None:intergenic
TGAATTGAGGTTTGACTCGT+AGG 0.499158 5_2:-58981246 None:intergenic
AGAACATCATGAAGCAAAAG+AGG 0.499250 5_2:-58982975 None:intergenic
CCGTGGCGACCTCGCTATGC+CGG 0.500432 5_2:+58981370 Msa0778480:CDS
TATGAGTATGGAACTGAAGT+TGG 0.501955 5_2:-58980963 None:intergenic
CACAGCATCTCTTGAGCCCA+TGG 0.506789 5_2:-58981576 None:intergenic
ATATATTATGTCTTGTTGGG+TGG 0.507396 5_2:-58981333 None:intergenic
GTTGTGTGCAACCACCGTAT+AGG 0.510615 5_2:-58981202 None:intergenic
TAGGACGGTGAAGTTGTTGT+AGG 0.515242 5_2:-58981306 None:intergenic
AACTAAGATCCCCAGTACAC+TGG 0.517551 5_2:-58981667 None:intergenic
CCGTGCCGCCACACGTGTCG+CGG 0.517691 5_2:-58981442 None:intergenic
CACAACTTTGTAAAGTGGAA+AGG 0.519527 5_2:-58983164 None:intergenic
TTCATTCTAAGCAAATCATA+GGG 0.521867 5_2:+58981015 Msa0778480:five_prime_UTR
GGAAAGCAGCTAGAATCTCT+TGG 0.527670 5_2:-58983143 None:intergenic
CCGCGACACGTGTGGCGGCA+CGG 0.531986 5_2:+58981442 Msa0778480:CDS
GGGCTATAATCCAGAAGCCA+TGG 0.539733 5_2:+58981559 Msa0778480:CDS
GGCACAAAAGCAACTCATAG+AGG 0.545510 5_2:-58982954 None:intergenic
AACTTCAGTTCCATACTCAT+AGG 0.552041 5_2:+58980965 Msa0778480:five_prime_UTR
ACCGTATAGGTAGAGGTTTG+TGG 0.553030 5_2:-58981189 None:intergenic
GCGACACAGGAGGCACAGTC+CGG 0.560545 5_2:-58981389 None:intergenic
TGTGACAGCGCGTGCGACAC+AGG 0.562753 5_2:-58981402 None:intergenic
GGCTATAATCCAGAAGCCAT+GGG 0.566857 5_2:+58981560 Msa0778480:CDS
ACTAAGATCCCCAGTACACT+GGG 0.571475 5_2:-58981666 None:intergenic
ACTGATCAAATCTCACCGTA+TGG 0.572747 5_2:+58982927 Msa0778480:three_prime_UTR
AGACGTATCATGGGCCCCAC+CGG 0.577254 5_2:-58981801 None:intergenic
TGCAACCACCGTATAGGTAG+AGG 0.578158 5_2:-58981196 None:intergenic
ATGCAAGATATTCTACCGGT+GGG 0.580075 5_2:+58981786 Msa0778480:CDS
GAGGACTTTGAACCTTGAAG+AGG 0.580077 5_2:+58983048 Msa0778480:three_prime_UTR
GTGTTGTAGAAGCGATCGGA+CGG 0.581568 5_2:+58981708 Msa0778480:CDS
TACGGTGAGATTTGATCAGT+GGG 0.585780 5_2:-58982924 None:intergenic
TACTGGGGATCTTAGTTTCG+GGG 0.586254 5_2:+58981673 Msa0778480:CDS
GGCGGCACGGTGCAGCTGGA+CGG 0.589369 5_2:+58981455 Msa0778480:CDS
GAATTGAGGTTTGACTCGTA+GGG 0.593749 5_2:-58981245 None:intergenic
ACAACAACTTCACCGTCCTA+GGG 0.596633 5_2:+58981309 Msa0778480:CDS
AGCAAGATTTGTAGGCGACA+AGG 0.597445 5_2:+58982704 Msa0778480:CDS
ATGTGCCGCGACACGTGTGG+CGG 0.600740 5_2:+58981437 Msa0778480:CDS
ACGCGCTGTCACACGTGCTG+GGG 0.608382 5_2:+58981412 Msa0778480:CDS
CCGGCATAGCGAGGTCGCCA+CGG 0.614398 5_2:-58981370 None:intergenic
GGCTTCTGGATTATAGCCCA+CGG 0.615132 5_2:-58981555 None:intergenic
GGACGGTTGAAAAGTGATTG+TGG 0.615271 5_2:+58981725 Msa0778480:CDS
TGTTATGCAAGATATTCTAC+CGG 0.616220 5_2:+58981782 Msa0778480:CDS
AGGCACAGTCCGGCATAGCG+AGG 0.619370 5_2:-58981379 None:intergenic
GATTGTGTTGTAGAAGCGAT+CGG 0.619387 5_2:+58981704 Msa0778480:CDS
ACTCATAGAGGAAGTCCATA+CGG 0.623640 5_2:-58982942 None:intergenic
TATGCAAGATATTCTACCGG+TGG 0.627330 5_2:+58981785 Msa0778480:CDS
CATGATACGTCTAAGGCCCA+TGG 0.629745 5_2:+58981812 Msa0778480:CDS
ATGGGCCTTAGACGTATCAT+GGG 0.630265 5_2:-58981810 None:intergenic
GGTGGTTCGGGTACTGTACG+TGG 0.632012 5_2:+58981638 Msa0778480:CDS
TCTGGATTATAGCCCACGGA+AGG 0.644583 5_2:-58981551 None:intergenic
ATACGGTGAGATTTGATCAG+TGG 0.646510 5_2:-58982925 None:intergenic
GACATGTGCCGCGACACGTG+TGG 0.649908 5_2:+58981434 Msa0778480:CDS
TGCAAGATATTCTACCGGTG+GGG 0.653008 5_2:+58981787 Msa0778480:CDS
AATGAAAACTTTGAACAATG+GGG 0.657828 5_2:-58980998 None:intergenic
TTGTTGGGTGGACCCTAGGA+CGG 0.669929 5_2:-58981321 None:intergenic
CTGAGTTGACTAGTGAGGTG+AGG 0.674733 5_2:-58981271 None:intergenic
TATGGCCTATATCAATGCCG+TGG 0.683171 5_2:+58981353 Msa0778480:CDS
GACAGCGCGTGCGACACAGG+AGG 0.694407 5_2:-58981399 None:intergenic
ACAAACCTCTACCTATACGG+TGG 0.712151 5_2:+58981191 Msa0778480:CDS
TGGTGTTGCCCAGTGTACTG+GGG 0.727512 5_2:+58981658 Msa0778480:CDS
TGTTGCTGAGTTGACTAGTG+AGG 0.747592 5_2:-58981276 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAATTTTGCATTATT+TGG + chr5_2:58983255-58983274 Msa0778480:three_prime_UTR 10.0%
!! TATGTTATATTATATGCATA+TGG - chr5_2:58981057-58981076 None:intergenic 15.0%
!!! TTTTCTTTTACTTTATGTTA+GGG + chr5_2:58982053-58982072 Msa0778480:intron 15.0%
!! AATGTTTACAAATTACAAAT+TGG - chr5_2:58982118-58982137 None:intergenic 15.0%
!! ATGTTGAAATAATAAAACAT+TGG - chr5_2:58982210-58982229 None:intergenic 15.0%
!! TATTTACTTGTGAAAATATT+AGG + chr5_2:58982287-58982306 Msa0778480:intron 15.0%
!! ATTTACTTGTGAAAATATTA+GGG + chr5_2:58982288-58982307 Msa0778480:intron 15.0%
!! TGAATTGATTATATTAGTTA+AGG - chr5_2:58982777-58982796 None:intergenic 15.0%
!! AAATTAAAACATATAACCAT+TGG + chr5_2:58982806-58982825 Msa0778480:intron 15.0%
!! TTAAATTTGAAAGAGAAAAA+GGG - chr5_2:58983014-58983033 None:intergenic 15.0%
!! TTTAAATTTGAAAGAGAAAA+AGG - chr5_2:58983015-58983034 None:intergenic 15.0%
!!! TTTAAAATTGAATTCAAAAG+AGG + chr5_2:58983029-58983048 Msa0778480:three_prime_UTR 15.0%
!! TATGTTATATTATATGCATA+TGG - chr5_2:58981057-58981076 None:intergenic 15.0%
!!! TTTTCTTTTACTTTATGTTA+GGG + chr5_2:58982053-58982072 Msa0778480:intron 15.0%
!! AATGTTTACAAATTACAAAT+TGG - chr5_2:58982118-58982137 None:intergenic 15.0%
!! ATGTTGAAATAATAAAACAT+TGG - chr5_2:58982210-58982229 None:intergenic 15.0%
!! TATTTACTTGTGAAAATATT+AGG + chr5_2:58982287-58982306 Msa0778480:intron 15.0%
!! ATTTACTTGTGAAAATATTA+GGG + chr5_2:58982288-58982307 Msa0778480:intron 15.0%
!! TGAATTGATTATATTAGTTA+AGG - chr5_2:58982777-58982796 None:intergenic 15.0%
!! AAATTAAAACATATAACCAT+TGG + chr5_2:58982806-58982825 Msa0778480:intron 15.0%
!! TTAAATTTGAAAGAGAAAAA+GGG - chr5_2:58983014-58983033 None:intergenic 15.0%
!! TTTAAATTTGAAAGAGAAAA+AGG - chr5_2:58983015-58983034 None:intergenic 15.0%
!!! TTTAAAATTGAATTCAAAAG+AGG + chr5_2:58983029-58983048 Msa0778480:three_prime_UTR 15.0%
!!! CTACTTCTTTTTTAATCAAA+AGG + chr5_2:58981878-58981897 Msa0778480:intron 20.0%
!!! GTTTTCTTTTACTTTATGTT+AGG + chr5_2:58982052-58982071 Msa0778480:intron 20.0%
!!! TTTTTTCTTACAAATCTCTT+TGG - chr5_2:58982236-58982255 None:intergenic 20.0%
!! AGAGATTTGTAAGAAAAAAA+AGG + chr5_2:58982237-58982256 Msa0778480:intron 20.0%
!! TTTGAATACAAAAAGAAAAG+AGG + chr5_2:58983106-58983125 Msa0778480:three_prime_UTR 20.0%
!!! CTACTTCTTTTTTAATCAAA+AGG + chr5_2:58981878-58981897 Msa0778480:intron 20.0%
!!! GTTTTCTTTTACTTTATGTT+AGG + chr5_2:58982052-58982071 Msa0778480:intron 20.0%
!!! TTTTTTCTTACAAATCTCTT+TGG - chr5_2:58982236-58982255 None:intergenic 20.0%
!! AGAGATTTGTAAGAAAAAAA+AGG + chr5_2:58982237-58982256 Msa0778480:intron 20.0%
!! TTTGAATACAAAAAGAAAAG+AGG + chr5_2:58983106-58983125 Msa0778480:three_prime_UTR 20.0%
! AATGAAAACTTTGAACAATG+GGG - chr5_2:58981001-58981020 None:intergenic 25.0%
! GAATGAAAACTTTGAACAAT+GGG - chr5_2:58981002-58981021 None:intergenic 25.0%
! AGAATGAAAACTTTGAACAA+TGG - chr5_2:58981003-58981022 None:intergenic 25.0%
! TTTCATTCTAAGCAAATCAT+AGG + chr5_2:58981014-58981033 Msa0778480:five_prime_UTR 25.0%
! TTCATTCTAAGCAAATCATA+GGG + chr5_2:58981015-58981034 Msa0778480:five_prime_UTR 25.0%
!!! CCATTTTTTGTTGTTGTTAT+TGG - chr5_2:58981103-58981122 None:intergenic 25.0%
! CCAATAACAACAACAAAAAA+TGG + chr5_2:58981100-58981119 Msa0778480:exon 25.0%
! TTCTGATAAGGAAAGAAAAA+GGG - chr5_2:58981162-58981181 None:intergenic 25.0%
! ATTCTGATAAGGAAAGAAAA+AGG - chr5_2:58981163-58981182 None:intergenic 25.0%
!!! TATGACAATGCTACTTTTTT+AGG + chr5_2:58981491-58981510 Msa0778480:CDS 25.0%
!!! AATGTTTTGTTGAAAAAGTG+TGG + chr5_2:58981527-58981546 Msa0778480:CDS 25.0%
!!! ATGTTTTGTTGAAAAAGTGT+GGG + chr5_2:58981528-58981547 Msa0778480:CDS 25.0%
! AGGAATTAATTGAAGAGTAA+CGG + chr5_2:58981898-58981917 Msa0778480:intron 25.0%
!!! TTTCAAGTATGTTTTTCTTC+CGG + chr5_2:58982010-58982029 Msa0778480:intron 25.0%
!!! ATGACTTTTTTTCTTTTGAC+CGG - chr5_2:58982032-58982051 None:intergenic 25.0%
! TTACAAATTACAAATTGGCA+TGG - chr5_2:58982113-58982132 None:intergenic 25.0%
!! GTAATTTGTAAACATTGACT+TGG + chr5_2:58982122-58982141 Msa0778480:intron 25.0%
! ACATGTGATCAAAATTCAAA+GGG - chr5_2:58982552-58982571 None:intergenic 25.0%
!!! AATTACCTGACTTATTTTGT+TGG + chr5_2:58982578-58982597 Msa0778480:intron 25.0%
! AAGAGATTTGCATTAATCAT+TGG + chr5_2:58982635-58982654 Msa0778480:CDS 25.0%
!!! TTAATCATTGGTTTATTAGC+AGG + chr5_2:58982647-58982666 Msa0778480:CDS 25.0%
!! ATTTAACTTATTTACCTGCA+CGG - chr5_2:58982879-58982898 None:intergenic 25.0%
! AATGAAAACTTTGAACAATG+GGG - chr5_2:58981001-58981020 None:intergenic 25.0%
! GAATGAAAACTTTGAACAAT+GGG - chr5_2:58981002-58981021 None:intergenic 25.0%
! AGAATGAAAACTTTGAACAA+TGG - chr5_2:58981003-58981022 None:intergenic 25.0%
! TTTCATTCTAAGCAAATCAT+AGG + chr5_2:58981014-58981033 Msa0778480:five_prime_UTR 25.0%
! TTCATTCTAAGCAAATCATA+GGG + chr5_2:58981015-58981034 Msa0778480:five_prime_UTR 25.0%
!!! CCATTTTTTGTTGTTGTTAT+TGG - chr5_2:58981103-58981122 None:intergenic 25.0%
! CCAATAACAACAACAAAAAA+TGG + chr5_2:58981100-58981119 Msa0778480:exon 25.0%
! TTCTGATAAGGAAAGAAAAA+GGG - chr5_2:58981162-58981181 None:intergenic 25.0%
! ATTCTGATAAGGAAAGAAAA+AGG - chr5_2:58981163-58981182 None:intergenic 25.0%
!!! TATGACAATGCTACTTTTTT+AGG + chr5_2:58981491-58981510 Msa0778480:CDS 25.0%
!!! AATGTTTTGTTGAAAAAGTG+TGG + chr5_2:58981527-58981546 Msa0778480:CDS 25.0%
!!! ATGTTTTGTTGAAAAAGTGT+GGG + chr5_2:58981528-58981547 Msa0778480:CDS 25.0%
! AGGAATTAATTGAAGAGTAA+CGG + chr5_2:58981898-58981917 Msa0778480:intron 25.0%
!!! TTTCAAGTATGTTTTTCTTC+CGG + chr5_2:58982010-58982029 Msa0778480:intron 25.0%
!!! ATGACTTTTTTTCTTTTGAC+CGG - chr5_2:58982032-58982051 None:intergenic 25.0%
! TTACAAATTACAAATTGGCA+TGG - chr5_2:58982113-58982132 None:intergenic 25.0%
!! GTAATTTGTAAACATTGACT+TGG + chr5_2:58982122-58982141 Msa0778480:intron 25.0%
! ACATGTGATCAAAATTCAAA+GGG - chr5_2:58982552-58982571 None:intergenic 25.0%
!!! AATTACCTGACTTATTTTGT+TGG + chr5_2:58982578-58982597 Msa0778480:intron 25.0%
! AAGAGATTTGCATTAATCAT+TGG + chr5_2:58982635-58982654 Msa0778480:CDS 25.0%
!!! TTAATCATTGGTTTATTAGC+AGG + chr5_2:58982647-58982666 Msa0778480:CDS 25.0%
!! ATTTAACTTATTTACCTGCA+CGG - chr5_2:58982879-58982898 None:intergenic 25.0%
AGATTAAAGACCTATGAGTA+TGG - chr5_2:58980978-58980997 None:intergenic 30.0%
! ATATATTATGTCTTGTTGGG+TGG - chr5_2:58981336-58981355 None:intergenic 30.0%
ACCCAACAAGACATAATATA+TGG + chr5_2:58981335-58981354 Msa0778480:CDS 30.0%
! GCCATATATTATGTCTTGTT+GGG - chr5_2:58981339-58981358 None:intergenic 30.0%
! AGATTATGGAGATTTGTTCT+TGG + chr5_2:58981754-58981773 Msa0778480:CDS 30.0%
! GATTATGGAGATTTGTTCTT+GGG + chr5_2:58981755-58981774 Msa0778480:CDS 30.0%
TGTTATGCAAGATATTCTAC+CGG + chr5_2:58981782-58981801 Msa0778480:CDS 30.0%
CACATGTGATCAAAATTCAA+AGG - chr5_2:58982553-58982572 None:intergenic 30.0%
!! CTTTGAATTTTGATCACATG+TGG + chr5_2:58982551-58982570 Msa0778480:intron 30.0%
AGCAATGAGAATAACAAGTA+TGG - chr5_2:58982678-58982697 None:intergenic 30.0%
CAAGATATTGCTTAATCCAA+TGG - chr5_2:58982825-58982844 None:intergenic 30.0%
ATTAAGTTTGTGACACTTAG+TGG + chr5_2:58982897-58982916 Msa0778480:three_prime_UTR 30.0%
!!! TCTTTTTTGTATCCTCTTCA+AGG - chr5_2:58983063-58983082 None:intergenic 30.0%
ACAAAAAAGAATGTGCAAGA+TGG + chr5_2:58983073-58983092 Msa0778480:three_prime_UTR 30.0%
CAAAAAAGAATGTGCAAGAT+GGG + chr5_2:58983074-58983093 Msa0778480:three_prime_UTR 30.0%
AAAAAAGAATGTGCAAGATG+GGG + chr5_2:58983075-58983094 Msa0778480:three_prime_UTR 30.0%
AATTGCACAACTTTGTAAAG+TGG - chr5_2:58983172-58983191 None:intergenic 30.0%
AGATTAAAGACCTATGAGTA+TGG - chr5_2:58980978-58980997 None:intergenic 30.0%
! ATATATTATGTCTTGTTGGG+TGG - chr5_2:58981336-58981355 None:intergenic 30.0%
ACCCAACAAGACATAATATA+TGG + chr5_2:58981335-58981354 Msa0778480:CDS 30.0%
! GCCATATATTATGTCTTGTT+GGG - chr5_2:58981339-58981358 None:intergenic 30.0%
! AGATTATGGAGATTTGTTCT+TGG + chr5_2:58981754-58981773 Msa0778480:CDS 30.0%
! GATTATGGAGATTTGTTCTT+GGG + chr5_2:58981755-58981774 Msa0778480:CDS 30.0%
TGTTATGCAAGATATTCTAC+CGG + chr5_2:58981782-58981801 Msa0778480:CDS 30.0%
CACATGTGATCAAAATTCAA+AGG - chr5_2:58982553-58982572 None:intergenic 30.0%
!! CTTTGAATTTTGATCACATG+TGG + chr5_2:58982551-58982570 Msa0778480:intron 30.0%
AGCAATGAGAATAACAAGTA+TGG - chr5_2:58982678-58982697 None:intergenic 30.0%
CAAGATATTGCTTAATCCAA+TGG - chr5_2:58982825-58982844 None:intergenic 30.0%
ATTAAGTTTGTGACACTTAG+TGG + chr5_2:58982897-58982916 Msa0778480:three_prime_UTR 30.0%
!!! TCTTTTTTGTATCCTCTTCA+AGG - chr5_2:58983063-58983082 None:intergenic 30.0%
ACAAAAAAGAATGTGCAAGA+TGG + chr5_2:58983073-58983092 Msa0778480:three_prime_UTR 30.0%
CAAAAAAGAATGTGCAAGAT+GGG + chr5_2:58983074-58983093 Msa0778480:three_prime_UTR 30.0%
AAAAAAGAATGTGCAAGATG+GGG + chr5_2:58983075-58983094 Msa0778480:three_prime_UTR 30.0%
AATTGCACAACTTTGTAAAG+TGG - chr5_2:58983172-58983191 None:intergenic 30.0%
TATGAGTATGGAACTGAAGT+TGG - chr5_2:58980966-58980985 None:intergenic 35.0%
AACTTCAGTTCCATACTCAT+AGG + chr5_2:58980965-58980984 Msa0778480:five_prime_UTR 35.0%
TGATAAGGAAAGAAAAAGGG+TGG - chr5_2:58981159-58981178 None:intergenic 35.0%
!! TGTGGTTGATGATTCTGATA+AGG - chr5_2:58981174-58981193 None:intergenic 35.0%
GGCCATATATTATGTCTTGT+TGG - chr5_2:58981340-58981359 None:intergenic 35.0%
!!! CAATGCTACTTTTTTAGGTG+TGG + chr5_2:58981496-58981515 Msa0778480:CDS 35.0%
TATGAGAAAGAACCCAAGAT+GGG - chr5_2:58981843-58981862 None:intergenic 35.0%
ATATGAGAAAGAACCCAAGA+TGG - chr5_2:58981844-58981863 None:intergenic 35.0%
AAAAGAAGTAGAAGCAGCAA+AGG - chr5_2:58981869-58981888 None:intergenic 35.0%
! AATTGAAGAGTAACGGAGAT+TGG + chr5_2:58981905-58981924 Msa0778480:intron 35.0%
! ATTGAAGAGTAACGGAGATT+GGG + chr5_2:58981906-58981925 Msa0778480:intron 35.0%
!! AAACATTGACTTGGAGAATG+TGG + chr5_2:58982131-58982150 Msa0778480:intron 35.0%
!!! ACCTGACTTATTTTGTTGGA+TGG + chr5_2:58982582-58982601 Msa0778480:intron 35.0%
CTTTCTTGAGCAAGATTTGT+AGG + chr5_2:58982696-58982715 Msa0778480:CDS 35.0%
AGAACATCATGAAGCAAAAG+AGG - chr5_2:58982978-58982997 None:intergenic 35.0%
CACAACTTTGTAAAGTGGAA+AGG - chr5_2:58983167-58983186 None:intergenic 35.0%
TATGAGTATGGAACTGAAGT+TGG - chr5_2:58980966-58980985 None:intergenic 35.0%
AACTTCAGTTCCATACTCAT+AGG + chr5_2:58980965-58980984 Msa0778480:five_prime_UTR 35.0%
TGATAAGGAAAGAAAAAGGG+TGG - chr5_2:58981159-58981178 None:intergenic 35.0%
!! TGTGGTTGATGATTCTGATA+AGG - chr5_2:58981174-58981193 None:intergenic 35.0%
GGCCATATATTATGTCTTGT+TGG - chr5_2:58981340-58981359 None:intergenic 35.0%
!!! CAATGCTACTTTTTTAGGTG+TGG + chr5_2:58981496-58981515 Msa0778480:CDS 35.0%
TATGAGAAAGAACCCAAGAT+GGG - chr5_2:58981843-58981862 None:intergenic 35.0%
ATATGAGAAAGAACCCAAGA+TGG - chr5_2:58981844-58981863 None:intergenic 35.0%
AAAAGAAGTAGAAGCAGCAA+AGG - chr5_2:58981869-58981888 None:intergenic 35.0%
! AATTGAAGAGTAACGGAGAT+TGG + chr5_2:58981905-58981924 Msa0778480:intron 35.0%
! ATTGAAGAGTAACGGAGATT+GGG + chr5_2:58981906-58981925 Msa0778480:intron 35.0%
!! AAACATTGACTTGGAGAATG+TGG + chr5_2:58982131-58982150 Msa0778480:intron 35.0%
!!! ACCTGACTTATTTTGTTGGA+TGG + chr5_2:58982582-58982601 Msa0778480:intron 35.0%
CTTTCTTGAGCAAGATTTGT+AGG + chr5_2:58982696-58982715 Msa0778480:CDS 35.0%
AGAACATCATGAAGCAAAAG+AGG - chr5_2:58982978-58982997 None:intergenic 35.0%
CACAACTTTGTAAAGTGGAA+AGG - chr5_2:58983167-58983186 None:intergenic 35.0%
ACCACAAACCTCTACCTATA+CGG + chr5_2:58981188-58981207 Msa0778480:CDS 40.0%
! GAATTGAGGTTTGACTCGTA+GGG - chr5_2:58981248-58981267 None:intergenic 40.0%
! TGAATTGAGGTTTGACTCGT+AGG - chr5_2:58981249-58981268 None:intergenic 40.0%
!!! TGCTACTTTTTTAGGTGTGG+AGG + chr5_2:58981499-58981518 Msa0778480:CDS 40.0%
TGTACTGGGGATCTTAGTTT+CGG + chr5_2:58981671-58981690 Msa0778480:CDS 40.0%
GATTGTGTTGTAGAAGCGAT+CGG + chr5_2:58981704-58981723 Msa0778480:CDS 40.0%
GATTGTGGTACTGCAGATTA+TGG + chr5_2:58981740-58981759 Msa0778480:CDS 40.0%
TATGCAAGATATTCTACCGG+TGG + chr5_2:58981785-58981804 Msa0778480:CDS 40.0%
ATGCAAGATATTCTACCGGT+GGG + chr5_2:58981786-58981805 Msa0778480:CDS 40.0%
!!! CAGCGTTTGTCGTTTTTTTC+AGG + chr5_2:58982078-58982097 Msa0778480:intron 40.0%
GCCATCCAACAAAATAAGTC+AGG - chr5_2:58982586-58982605 None:intergenic 40.0%
!! TATTTTGTTGGATGGCTTGC+AGG + chr5_2:58982590-58982609 Msa0778480:intron 40.0%
GCAGGAAAATTGGGTATAGT+AGG + chr5_2:58982608-58982627 Msa0778480:intron 40.0%
GCGACAAGGTAAGTAGTATT+AGG + chr5_2:58982718-58982737 Msa0778480:intron 40.0%
TACGGTGAGATTTGATCAGT+GGG - chr5_2:58982927-58982946 None:intergenic 40.0%
ATACGGTGAGATTTGATCAG+TGG - chr5_2:58982928-58982947 None:intergenic 40.0%
ACTGATCAAATCTCACCGTA+TGG + chr5_2:58982927-58982946 Msa0778480:three_prime_UTR 40.0%
ACTCATAGAGGAAGTCCATA+CGG - chr5_2:58982945-58982964 None:intergenic 40.0%
ACCACAAACCTCTACCTATA+CGG + chr5_2:58981188-58981207 Msa0778480:CDS 40.0%
! GAATTGAGGTTTGACTCGTA+GGG - chr5_2:58981248-58981267 None:intergenic 40.0%
! TGAATTGAGGTTTGACTCGT+AGG - chr5_2:58981249-58981268 None:intergenic 40.0%
!!! TGCTACTTTTTTAGGTGTGG+AGG + chr5_2:58981499-58981518 Msa0778480:CDS 40.0%
TGTACTGGGGATCTTAGTTT+CGG + chr5_2:58981671-58981690 Msa0778480:CDS 40.0%
GATTGTGTTGTAGAAGCGAT+CGG + chr5_2:58981704-58981723 Msa0778480:CDS 40.0%
GATTGTGGTACTGCAGATTA+TGG + chr5_2:58981740-58981759 Msa0778480:CDS 40.0%
TATGCAAGATATTCTACCGG+TGG + chr5_2:58981785-58981804 Msa0778480:CDS 40.0%
ATGCAAGATATTCTACCGGT+GGG + chr5_2:58981786-58981805 Msa0778480:CDS 40.0%
!!! CAGCGTTTGTCGTTTTTTTC+AGG + chr5_2:58982078-58982097 Msa0778480:intron 40.0%
GCCATCCAACAAAATAAGTC+AGG - chr5_2:58982586-58982605 None:intergenic 40.0%
!! TATTTTGTTGGATGGCTTGC+AGG + chr5_2:58982590-58982609 Msa0778480:intron 40.0%
GCAGGAAAATTGGGTATAGT+AGG + chr5_2:58982608-58982627 Msa0778480:intron 40.0%
GCGACAAGGTAAGTAGTATT+AGG + chr5_2:58982718-58982737 Msa0778480:intron 40.0%
TACGGTGAGATTTGATCAGT+GGG - chr5_2:58982927-58982946 None:intergenic 40.0%
ATACGGTGAGATTTGATCAG+TGG - chr5_2:58982928-58982947 None:intergenic 40.0%
ACTGATCAAATCTCACCGTA+TGG + chr5_2:58982927-58982946 Msa0778480:three_prime_UTR 40.0%
ACTCATAGAGGAAGTCCATA+CGG - chr5_2:58982945-58982964 None:intergenic 40.0%
ACCGTATAGGTAGAGGTTTG+TGG - chr5_2:58981192-58981211 None:intergenic 45.0%
ACAAACCTCTACCTATACGG+TGG + chr5_2:58981191-58981210 Msa0778480:CDS 45.0%
! TTTGACTCGTAGGGTGAGTT+TGG - chr5_2:58981239-58981258 None:intergenic 45.0%
! TGTTGCTGAGTTGACTAGTG+AGG - chr5_2:58981279-58981298 None:intergenic 45.0%
TAGGACGGTGAAGTTGTTGT+AGG - chr5_2:58981309-58981328 None:intergenic 45.0%
TACAACAACTTCACCGTCCT+AGG + chr5_2:58981308-58981327 Msa0778480:CDS 45.0%
ACAACAACTTCACCGTCCTA+GGG + chr5_2:58981309-58981328 Msa0778480:CDS 45.0%
TATGGCCTATATCAATGCCG+TGG + chr5_2:58981353-58981372 Msa0778480:CDS 45.0%
GGCTATAATCCAGAAGCCAT+GGG + chr5_2:58981560-58981579 Msa0778480:CDS 45.0%
ACTAAGATCCCCAGTACACT+GGG - chr5_2:58981669-58981688 None:intergenic 45.0%
AACTAAGATCCCCAGTACAC+TGG - chr5_2:58981670-58981689 None:intergenic 45.0%
GTACTGGGGATCTTAGTTTC+GGG + chr5_2:58981672-58981691 Msa0778480:CDS 45.0%
TACTGGGGATCTTAGTTTCG+GGG + chr5_2:58981673-58981692 Msa0778480:CDS 45.0%
GGACGGTTGAAAAGTGATTG+TGG + chr5_2:58981725-58981744 Msa0778480:CDS 45.0%
TGCAAGATATTCTACCGGTG+GGG + chr5_2:58981787-58981806 Msa0778480:CDS 45.0%
ATGGGCCTTAGACGTATCAT+GGG - chr5_2:58981813-58981832 None:intergenic 45.0%
! TGGATGGCTTGCAGGAAAAT+TGG + chr5_2:58982598-58982617 Msa0778480:intron 45.0%
! GGATGGCTTGCAGGAAAATT+GGG + chr5_2:58982599-58982618 Msa0778480:intron 45.0%
AGCAAGATTTGTAGGCGACA+AGG + chr5_2:58982704-58982723 Msa0778480:CDS 45.0%
!!! CTTGTGTCTTTTTTCCGTGC+AGG + chr5_2:58982862-58982881 Msa0778480:intron 45.0%
GGCACAAAAGCAACTCATAG+AGG - chr5_2:58982957-58982976 None:intergenic 45.0%
GAGGACTTTGAACCTTGAAG+AGG + chr5_2:58983048-58983067 Msa0778480:three_prime_UTR 45.0%
GGAAAGCAGCTAGAATCTCT+TGG - chr5_2:58983146-58983165 None:intergenic 45.0%
ACCGTATAGGTAGAGGTTTG+TGG - chr5_2:58981192-58981211 None:intergenic 45.0%
ACAAACCTCTACCTATACGG+TGG + chr5_2:58981191-58981210 Msa0778480:CDS 45.0%
! TTTGACTCGTAGGGTGAGTT+TGG - chr5_2:58981239-58981258 None:intergenic 45.0%
! TGTTGCTGAGTTGACTAGTG+AGG - chr5_2:58981279-58981298 None:intergenic 45.0%
TAGGACGGTGAAGTTGTTGT+AGG - chr5_2:58981309-58981328 None:intergenic 45.0%
TACAACAACTTCACCGTCCT+AGG + chr5_2:58981308-58981327 Msa0778480:CDS 45.0%
ACAACAACTTCACCGTCCTA+GGG + chr5_2:58981309-58981328 Msa0778480:CDS 45.0%
TATGGCCTATATCAATGCCG+TGG + chr5_2:58981353-58981372 Msa0778480:CDS 45.0%
GGCTATAATCCAGAAGCCAT+GGG + chr5_2:58981560-58981579 Msa0778480:CDS 45.0%
ACTAAGATCCCCAGTACACT+GGG - chr5_2:58981669-58981688 None:intergenic 45.0%
AACTAAGATCCCCAGTACAC+TGG - chr5_2:58981670-58981689 None:intergenic 45.0%
GTACTGGGGATCTTAGTTTC+GGG + chr5_2:58981672-58981691 Msa0778480:CDS 45.0%
TACTGGGGATCTTAGTTTCG+GGG + chr5_2:58981673-58981692 Msa0778480:CDS 45.0%
GGACGGTTGAAAAGTGATTG+TGG + chr5_2:58981725-58981744 Msa0778480:CDS 45.0%
TGCAAGATATTCTACCGGTG+GGG + chr5_2:58981787-58981806 Msa0778480:CDS 45.0%
ATGGGCCTTAGACGTATCAT+GGG - chr5_2:58981813-58981832 None:intergenic 45.0%
! TGGATGGCTTGCAGGAAAAT+TGG + chr5_2:58982598-58982617 Msa0778480:intron 45.0%
! GGATGGCTTGCAGGAAAATT+GGG + chr5_2:58982599-58982618 Msa0778480:intron 45.0%
AGCAAGATTTGTAGGCGACA+AGG + chr5_2:58982704-58982723 Msa0778480:CDS 45.0%
!!! CTTGTGTCTTTTTTCCGTGC+AGG + chr5_2:58982862-58982881 Msa0778480:intron 45.0%
GGCACAAAAGCAACTCATAG+AGG - chr5_2:58982957-58982976 None:intergenic 45.0%
GAGGACTTTGAACCTTGAAG+AGG + chr5_2:58983048-58983067 Msa0778480:three_prime_UTR 45.0%
GGAAAGCAGCTAGAATCTCT+TGG - chr5_2:58983146-58983165 None:intergenic 45.0%
TGCAACCACCGTATAGGTAG+AGG - chr5_2:58981199-58981218 None:intergenic 50.0%
GTTGTGTGCAACCACCGTAT+AGG - chr5_2:58981205-58981224 None:intergenic 50.0%
GTGAGGTGAGGAGTGAATTG+AGG - chr5_2:58981262-58981281 None:intergenic 50.0%
! CTGAGTTGACTAGTGAGGTG+AGG - chr5_2:58981274-58981293 None:intergenic 50.0%
! AAAAAGTGTGGGCCTTCCGT+GGG + chr5_2:58981539-58981558 Msa0778480:CDS 50.0%
TCTGGATTATAGCCCACGGA+AGG - chr5_2:58981554-58981573 None:intergenic 50.0%
GGCTTCTGGATTATAGCCCA+CGG - chr5_2:58981558-58981577 None:intergenic 50.0%
GGGCTATAATCCAGAAGCCA+TGG + chr5_2:58981559-58981578 Msa0778480:CDS 50.0%
TCAAGAGATGCTGTGCTTGG+CGG + chr5_2:58981584-58981603 Msa0778480:CDS 50.0%
!!! TTAGGTGGGCCTTTTAGGGT+TGG + chr5_2:58981617-58981636 Msa0778480:CDS 50.0%
!!! GCCTTTTAGGGTTGGTGGTT+CGG + chr5_2:58981625-58981644 Msa0778480:CDS 50.0%
!!! CCTTTTAGGGTTGGTGGTTC+GGG + chr5_2:58981626-58981645 Msa0778480:CDS 50.0%
GTGTTGTAGAAGCGATCGGA+CGG + chr5_2:58981708-58981727 Msa0778480:CDS 50.0%
CATGGGCCTTAGACGTATCA+TGG - chr5_2:58981814-58981833 None:intergenic 50.0%
! CATGATACGTCTAAGGCCCA+TGG + chr5_2:58981812-58981831 Msa0778480:CDS 50.0%
! CCCAAGATGGGCTTTACCAT+GGG - chr5_2:58981831-58981850 None:intergenic 50.0%
CCCATGGTAAAGCCCATCTT+GGG + chr5_2:58981828-58981847 Msa0778480:intron 50.0%
! ACCCAAGATGGGCTTTACCA+TGG - chr5_2:58981832-58981851 None:intergenic 50.0%
! GAAGAGTAACGGAGATTGGG+TGG + chr5_2:58981909-58981928 Msa0778480:intron 50.0%
TGCAACCACCGTATAGGTAG+AGG - chr5_2:58981199-58981218 None:intergenic 50.0%
GTTGTGTGCAACCACCGTAT+AGG - chr5_2:58981205-58981224 None:intergenic 50.0%
GTGAGGTGAGGAGTGAATTG+AGG - chr5_2:58981262-58981281 None:intergenic 50.0%
! CTGAGTTGACTAGTGAGGTG+AGG - chr5_2:58981274-58981293 None:intergenic 50.0%
! AAAAAGTGTGGGCCTTCCGT+GGG + chr5_2:58981539-58981558 Msa0778480:CDS 50.0%
TCTGGATTATAGCCCACGGA+AGG - chr5_2:58981554-58981573 None:intergenic 50.0%
GGCTTCTGGATTATAGCCCA+CGG - chr5_2:58981558-58981577 None:intergenic 50.0%
GGGCTATAATCCAGAAGCCA+TGG + chr5_2:58981559-58981578 Msa0778480:CDS 50.0%
TCAAGAGATGCTGTGCTTGG+CGG + chr5_2:58981584-58981603 Msa0778480:CDS 50.0%
!!! TTAGGTGGGCCTTTTAGGGT+TGG + chr5_2:58981617-58981636 Msa0778480:CDS 50.0%
!!! GCCTTTTAGGGTTGGTGGTT+CGG + chr5_2:58981625-58981644 Msa0778480:CDS 50.0%
!!! CCTTTTAGGGTTGGTGGTTC+GGG + chr5_2:58981626-58981645 Msa0778480:CDS 50.0%
GTGTTGTAGAAGCGATCGGA+CGG + chr5_2:58981708-58981727 Msa0778480:CDS 50.0%
CATGGGCCTTAGACGTATCA+TGG - chr5_2:58981814-58981833 None:intergenic 50.0%
! CATGATACGTCTAAGGCCCA+TGG + chr5_2:58981812-58981831 Msa0778480:CDS 50.0%
! CCCAAGATGGGCTTTACCAT+GGG - chr5_2:58981831-58981850 None:intergenic 50.0%
CCCATGGTAAAGCCCATCTT+GGG + chr5_2:58981828-58981847 Msa0778480:intron 50.0%
! ACCCAAGATGGGCTTTACCA+TGG - chr5_2:58981832-58981851 None:intergenic 50.0%
! GAAGAGTAACGGAGATTGGG+TGG + chr5_2:58981909-58981928 Msa0778480:intron 50.0%
TTGTTGGGTGGACCCTAGGA+CGG - chr5_2:58981324-58981343 None:intergenic 55.0%
! TGTCTTGTTGGGTGGACCCT+AGG - chr5_2:58981328-58981347 None:intergenic 55.0%
!! GGTCGCCACGGCATTGATAT+AGG - chr5_2:58981361-58981380 None:intergenic 55.0%
! GAAAAAGTGTGGGCCTTCCG+TGG + chr5_2:58981538-58981557 Msa0778480:CDS 55.0%
TCTCTTGAGCCCATGGCTTC+TGG - chr5_2:58981572-58981591 None:intergenic 55.0%
CACAGCATCTCTTGAGCCCA+TGG - chr5_2:58981579-58981598 None:intergenic 55.0%
GGCTCAAGAGATGCTGTGCT+TGG + chr5_2:58981581-58981600 Msa0778480:CDS 55.0%
CAAGAGATGCTGTGCTTGGC+GGG + chr5_2:58981585-58981604 Msa0778480:CDS 55.0%
! TGGGCTTAGGTGGGCCTTTT+AGG + chr5_2:58981612-58981631 Msa0778480:CDS 55.0%
! GGGCTTAGGTGGGCCTTTTA+GGG + chr5_2:58981613-58981632 Msa0778480:CDS 55.0%
CCCGAACCACCAACCCTAAA+AGG - chr5_2:58981629-58981648 None:intergenic 55.0%
!! GTGGTGTTGCCCAGTGTACT+GGG + chr5_2:58981657-58981676 Msa0778480:CDS 55.0%
!! TGGTGTTGCCCAGTGTACTG+GGG + chr5_2:58981658-58981677 Msa0778480:CDS 55.0%
TGGGGCCCATGATACGTCTA+AGG + chr5_2:58981805-58981824 Msa0778480:CDS 55.0%
GCCCATGGTAAAGCCCATCT+TGG + chr5_2:58981827-58981846 Msa0778480:intron 55.0%
! GAGTAACGGAGATTGGGTGG+TGG + chr5_2:58981912-58981931 Msa0778480:intron 55.0%
TTGTTGGGTGGACCCTAGGA+CGG - chr5_2:58981324-58981343 None:intergenic 55.0%
! TGTCTTGTTGGGTGGACCCT+AGG - chr5_2:58981328-58981347 None:intergenic 55.0%
!! GGTCGCCACGGCATTGATAT+AGG - chr5_2:58981361-58981380 None:intergenic 55.0%
! GAAAAAGTGTGGGCCTTCCG+TGG + chr5_2:58981538-58981557 Msa0778480:CDS 55.0%
TCTCTTGAGCCCATGGCTTC+TGG - chr5_2:58981572-58981591 None:intergenic 55.0%
CACAGCATCTCTTGAGCCCA+TGG - chr5_2:58981579-58981598 None:intergenic 55.0%
GGCTCAAGAGATGCTGTGCT+TGG + chr5_2:58981581-58981600 Msa0778480:CDS 55.0%
CAAGAGATGCTGTGCTTGGC+GGG + chr5_2:58981585-58981604 Msa0778480:CDS 55.0%
! TGGGCTTAGGTGGGCCTTTT+AGG + chr5_2:58981612-58981631 Msa0778480:CDS 55.0%
! GGGCTTAGGTGGGCCTTTTA+GGG + chr5_2:58981613-58981632 Msa0778480:CDS 55.0%
CCCGAACCACCAACCCTAAA+AGG - chr5_2:58981629-58981648 None:intergenic 55.0%
!! GTGGTGTTGCCCAGTGTACT+GGG + chr5_2:58981657-58981676 Msa0778480:CDS 55.0%
!! TGGTGTTGCCCAGTGTACTG+GGG + chr5_2:58981658-58981677 Msa0778480:CDS 55.0%
TGGGGCCCATGATACGTCTA+AGG + chr5_2:58981805-58981824 Msa0778480:CDS 55.0%
GCCCATGGTAAAGCCCATCT+TGG + chr5_2:58981827-58981846 Msa0778480:intron 55.0%
! GAGTAACGGAGATTGGGTGG+TGG + chr5_2:58981912-58981931 Msa0778480:intron 55.0%
GGTGCAGCTGGACGGTTGTT+TGG + chr5_2:58981463-58981482 Msa0778480:CDS 60.0%
!!! GGTGGGCCTTTTAGGGTTGG+TGG + chr5_2:58981620-58981639 Msa0778480:CDS 60.0%
! GGTGGTTCGGGTACTGTACG+TGG + chr5_2:58981638-58981657 Msa0778480:CDS 60.0%
!! CGTGGTGTTGCCCAGTGTAC+TGG + chr5_2:58981656-58981675 Msa0778480:CDS 60.0%
AGACGTATCATGGGCCCCAC+CGG - chr5_2:58981804-58981823 None:intergenic 60.0%
GGTGCAGCTGGACGGTTGTT+TGG + chr5_2:58981463-58981482 Msa0778480:CDS 60.0%
!!! GGTGGGCCTTTTAGGGTTGG+TGG + chr5_2:58981620-58981639 Msa0778480:CDS 60.0%
! GGTGGTTCGGGTACTGTACG+TGG + chr5_2:58981638-58981657 Msa0778480:CDS 60.0%
!! CGTGGTGTTGCCCAGTGTAC+TGG + chr5_2:58981656-58981675 Msa0778480:CDS 60.0%
AGACGTATCATGGGCCCCAC+CGG - chr5_2:58981804-58981823 None:intergenic 60.0%
AGGCACAGTCCGGCATAGCG+AGG - chr5_2:58981382-58981401 None:intergenic 65.0%
! GCGACACAGGAGGCACAGTC+CGG - chr5_2:58981392-58981411 None:intergenic 65.0%
TGTGACAGCGCGTGCGACAC+AGG - chr5_2:58981405-58981424 None:intergenic 65.0%
CACGCGCTGTCACACGTGCT+GGG + chr5_2:58981411-58981430 Msa0778480:CDS 65.0%
ACGCGCTGTCACACGTGCTG+GGG + chr5_2:58981412-58981431 Msa0778480:CDS 65.0%
GACATGTGCCGCGACACGTG+TGG + chr5_2:58981434-58981453 Msa0778480:CDS 65.0%
ATGTGCCGCGACACGTGTGG+CGG + chr5_2:58981437-58981456 Msa0778480:CDS 65.0%
!! TGCTGTGCTTGGCGGGCTTG+TGG + chr5_2:58981592-58981611 Msa0778480:CDS 65.0%
!! GCTGTGCTTGGCGGGCTTGT+GGG + chr5_2:58981593-58981612 Msa0778480:CDS 65.0%
!! CTTGGCGGGCTTGTGGGCTT+AGG + chr5_2:58981599-58981618 Msa0778480:CDS 65.0%
GCGGGCTTGTGGGCTTAGGT+GGG + chr5_2:58981603-58981622 Msa0778480:CDS 65.0%
AGGCACAGTCCGGCATAGCG+AGG - chr5_2:58981382-58981401 None:intergenic 65.0%
! GCGACACAGGAGGCACAGTC+CGG - chr5_2:58981392-58981411 None:intergenic 65.0%
TGTGACAGCGCGTGCGACAC+AGG - chr5_2:58981405-58981424 None:intergenic 65.0%
CACGCGCTGTCACACGTGCT+GGG + chr5_2:58981411-58981430 Msa0778480:CDS 65.0%
ACGCGCTGTCACACGTGCTG+GGG + chr5_2:58981412-58981431 Msa0778480:CDS 65.0%
GACATGTGCCGCGACACGTG+TGG + chr5_2:58981434-58981453 Msa0778480:CDS 65.0%
ATGTGCCGCGACACGTGTGG+CGG + chr5_2:58981437-58981456 Msa0778480:CDS 65.0%
!! TGCTGTGCTTGGCGGGCTTG+TGG + chr5_2:58981592-58981611 Msa0778480:CDS 65.0%
!! GCTGTGCTTGGCGGGCTTGT+GGG + chr5_2:58981593-58981612 Msa0778480:CDS 65.0%
!! CTTGGCGGGCTTGTGGGCTT+AGG + chr5_2:58981599-58981618 Msa0778480:CDS 65.0%
GCGGGCTTGTGGGCTTAGGT+GGG + chr5_2:58981603-58981622 Msa0778480:CDS 65.0%
CCGGCATAGCGAGGTCGCCA+CGG - chr5_2:58981373-58981392 None:intergenic 70.0%
CCGTGGCGACCTCGCTATGC+CGG + chr5_2:58981370-58981389 Msa0778480:CDS 70.0%
GACAGCGCGTGCGACACAGG+AGG - chr5_2:58981402-58981421 None:intergenic 70.0%
GCACGCGCTGTCACACGTGC+TGG + chr5_2:58981410-58981429 Msa0778480:CDS 70.0%
! GGCGGGCTTGTGGGCTTAGG+TGG + chr5_2:58981602-58981621 Msa0778480:CDS 70.0%
CCGGCATAGCGAGGTCGCCA+CGG - chr5_2:58981373-58981392 None:intergenic 70.0%
CCGTGGCGACCTCGCTATGC+CGG + chr5_2:58981370-58981389 Msa0778480:CDS 70.0%
GACAGCGCGTGCGACACAGG+AGG - chr5_2:58981402-58981421 None:intergenic 70.0%
GCACGCGCTGTCACACGTGC+TGG + chr5_2:58981410-58981429 Msa0778480:CDS 70.0%
! GGCGGGCTTGTGGGCTTAGG+TGG + chr5_2:58981602-58981621 Msa0778480:CDS 70.0%
CCGTGCCGCCACACGTGTCG+CGG - chr5_2:58981445-58981464 None:intergenic 75.0%
CCGCGACACGTGTGGCGGCA+CGG + chr5_2:58981442-58981461 Msa0778480:CDS 75.0%
GTGTGGCGGCACGGTGCAGC+TGG + chr5_2:58981451-58981470 Msa0778480:CDS 75.0%
GGCGGCACGGTGCAGCTGGA+CGG + chr5_2:58981455-58981474 Msa0778480:CDS 75.0%
CCGTGCCGCCACACGTGTCG+CGG - chr5_2:58981445-58981464 None:intergenic 75.0%
CCGCGACACGTGTGGCGGCA+CGG + chr5_2:58981442-58981461 Msa0778480:CDS 75.0%
GTGTGGCGGCACGGTGCAGC+TGG + chr5_2:58981451-58981470 Msa0778480:CDS 75.0%
GGCGGCACGGTGCAGCTGGA+CGG + chr5_2:58981455-58981474 Msa0778480:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 58980926 58983275 58980926 ID=Msa0778480;Name=Msa0778480
chr5_2 mRNA 58980926 58983275 58980926 ID=Msa0778480-mRNA-1;Parent=Msa0778480;Name=Msa0778480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=193|1|1|1|0.5|0.66|3|384|278
chr5_2 exon 58980926 58981833 58980926 ID=Msa0778480-mRNA-1:exon:17377;Parent=Msa0778480-mRNA-1
chr5_2 exon 58982612 58982725 58982612 ID=Msa0778480-mRNA-1:exon:17378;Parent=Msa0778480-mRNA-1
chr5_2 exon 58982884 58983275 58982884 ID=Msa0778480-mRNA-1:exon:17379;Parent=Msa0778480-mRNA-1
chr5_2 five_prime_UTR 58980926 58981118 58980926 ID=Msa0778480-mRNA-1:five_prime_utr;Parent=Msa0778480-mRNA-1
chr5_2 CDS 58981119 58981833 58981119 ID=Msa0778480-mRNA-1:cds;Parent=Msa0778480-mRNA-1
chr5_2 CDS 58982612 58982725 58982612 ID=Msa0778480-mRNA-1:cds;Parent=Msa0778480-mRNA-1
chr5_2 CDS 58982884 58982891 58982884 ID=Msa0778480-mRNA-1:cds;Parent=Msa0778480-mRNA-1
chr5_2 three_prime_UTR 58982892 58983275 58982892 ID=Msa0778480-mRNA-1:three_prime_utr;Parent=Msa0778480-mRNA-1
Gene Sequence

>Msa0778480

ATGGTGAGATTCTTCAAAATTATCTTTCTTTTTTCTACCACCCTTTTTCTTTCCTTATCAGAATCATCAACCACAAACCTCTACCTATACGGTGGTTGCACACAACAAATGTACACACCAAACTCACCCTACGAGTCAAACCTCAATTCACTCCTCACCTCACTAGTCAACTCAGCAACATACTCATCCTACAACAACTTCACCGTCCTAGGGTCCACCCAACAAGACATAATATATGGCCTATATCAATGCCGTGGCGACCTCGCTATGCCGGACTGTGCCTCCTGTGTCGCACGCGCTGTCACACGTGCTGGGGACATGTGCCGCGACACGTGTGGCGGCACGGTGCAGCTGGACGGTTGTTTGGTGAAGTATGACAATGCTACTTTTTTAGGTGTGGAGGATAAGAATGTTTTGTTGAAAAAGTGTGGGCCTTCCGTGGGCTATAATCCAGAAGCCATGGGCTCAAGAGATGCTGTGCTTGGCGGGCTTGTGGGCTTAGGTGGGCCTTTTAGGGTTGGTGGTTCGGGTACTGTACGTGGTGTTGCCCAGTGTACTGGGGATCTTAGTTTCGGGGAGTGTCAAGATTGTGTTGTAGAAGCGATCGGACGGTTGAAAAGTGATTGTGGTACTGCAGATTATGGAGATTTGTTCTTGGGTAAATGTTATGCAAGATATTCTACCGGTGGGGCCCATGATACGTCTAAGGCCCATGGAAAATTGGGTATAGTAGGTGAAAAGAGATTTGCATTAATCATTGGTTTATTAGCAGGAGCAGCCATACTTGTTATTCTCATTGCTTTCTTGAGCAAGATTTGTAGGCGACAAGGTAAATAA
Protein sequence

>Msa0778480

MVRFFKIIFLFSTTLFLSLSESSTTNLYLYGGCTQQMYTPNSPYESNLNSLLTSLVNSATYSSYNNFTVLGSTQQDIIYGLYQCRGDLAMPDCASCVARAVTRAGDMCRDTCGGTVQLDGCLVKYDNATFLGVEDKNVLLKKCGPSVGYNPEAMGSRDAVLGGLVGLGGPFRVGGSGTVRGVAQCTGDLSFGECQDCVVEAIGRLKSDCGTADYGDLFLGKCYARYSTGGAHDTSKAHGKLGIVGEKRFALIIGLLAGAAILVILIAFLSKICRRQGK*