AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0541940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541940 MtrunA17_Chr4g0033961 96.037 429 14 1 1 426 1 429 0.0 848
Msa0541940 MtrunA17_Chr1g0162441 61.556 437 150 7 2 426 3 433 0.0 543
Msa0541940 MtrunA17_Chr1g0162411 42.347 392 182 8 4 356 5 391 1.28e-91 284
Msa0541940 MtrunA17_Chr7g0233571 40.909 110 63 1 1 110 5 112 6.29e-23 96.7
Msa0541940 MtrunA17_Chr3g0103151 37.778 135 74 2 6 140 12 136 7.70e-23 94.4
Msa0541940 MtrunA17_Chr8g0390841 40.741 108 64 0 6 113 39 146 5.33e-22 98.2
Msa0541940 MtrunA17_Chr8g0390841 31.638 177 108 6 224 399 177 341 1.13e-17 85.1
Msa0541940 MtrunA17_Chr7g0233561 41.414 99 58 0 6 104 18 116 1.30e-21 95.1
Msa0541940 MtrunA17_Chr7g0233561 34.848 132 78 2 270 393 186 317 7.20e-15 75.5
Msa0541940 MtrunA17_Chr1g0162421 58.621 58 24 0 20 77 7 64 2.09e-21 87.4
Msa0541940 MtrunA17_Chr3g0103181 35.606 132 75 2 6 137 12 133 7.45e-21 92.0
Msa0541940 MtrunA17_Chr1g0162431 67.925 53 17 0 341 393 5 57 1.11e-20 85.5
Msa0541940 MtrunA17_Chr3g0131891 38.393 112 67 1 6 117 19 128 1.76e-20 92.0
Msa0541940 MtrunA17_Chr3g0131891 36.585 123 72 2 277 393 186 308 6.75e-18 84.3
Msa0541940 MtrunA17_Chr3g0103191 34.848 132 76 2 6 137 12 133 3.13e-20 89.7
Msa0541940 MtrunA17_Chr7g0233541 41.667 96 54 1 22 115 2 97 8.88e-20 89.4
Msa0541940 MtrunA17_Chr1g0154111 25.269 372 220 8 18 384 38 356 8.88e-20 91.7
Msa0541940 MtrunA17_Chr1g0163071 37.500 120 68 2 22 141 2 114 1.56e-19 88.6
Msa0541940 MtrunA17_Chr1g0163071 37.288 118 67 3 283 400 187 297 6.67e-19 87.0
Msa0541940 MtrunA17_Chr5g0419201 34.483 145 94 1 3 146 13 157 1.60e-19 86.3
Msa0541940 MtrunA17_Chr3g0103171 36.752 117 66 1 21 137 5 113 1.79e-19 87.8
Msa0541940 MtrunA17_Chr3g0077411 36.364 110 70 0 3 112 22 131 4.08e-19 89.7
Msa0541940 MtrunA17_Chr3g0077411 36.893 103 64 1 3 104 259 361 3.72e-17 83.6
Msa0541940 MtrunA17_Chr3g0077461 38.235 102 63 0 3 104 234 335 4.16e-19 89.4
Msa0541940 MtrunA17_Chr3g0077461 36.957 92 58 0 21 112 22 113 5.37e-16 79.7
Msa0541940 MtrunA17_Chr1g0154211 27.750 400 224 16 11 392 27 379 4.77e-19 88.6
Msa0541940 MtrunA17_Chr4g0009491 39.216 102 62 0 3 104 222 323 1.27e-18 87.4
Msa0541940 MtrunA17_Chr4g0009491 35.294 85 55 0 20 104 11 95 9.94e-12 66.6
Msa0541940 MtrunA17_Chr3g0077451 39.785 93 56 0 20 112 10 102 2.13e-18 84.0
Msa0541940 MtrunA17_Chr3g0077451 35.821 134 70 5 267 391 111 237 1.98e-13 69.7
Msa0541940 MtrunA17_Chr1g0154101 25.059 427 267 12 10 392 187 604 2.90e-18 87.4
Msa0541940 MtrunA17_Chr1g0154101 37.778 90 56 0 6 95 25 114 2.82e-11 65.9
Msa0541940 MtrunA17_Chr7g0233521 42.697 89 49 1 22 110 2 88 3.49e-18 84.3
Msa0541940 MtrunA17_Chr7g0233521 30.303 132 85 3 268 393 138 268 1.41e-11 64.7
Msa0541940 MtrunA17_Chr1g0208771 37.405 131 74 4 270 399 178 301 3.84e-18 86.3
Msa0541940 MtrunA17_Chr1g0208771 33.058 121 66 1 21 141 12 117 1.40e-16 81.6
Msa0541940 MtrunA17_Chr1g0154191 24.823 423 219 17 9 409 24 369 8.46e-18 84.7
Msa0541940 MtrunA17_Chr5g0429931 41.667 84 49 0 21 104 10 93 1.47e-17 82.0
Msa0541940 MtrunA17_Chr5g0429931 36.170 141 69 4 263 388 108 242 2.48e-14 72.4
Msa0541940 MtrunA17_Chr3g0077381 38.235 102 63 0 3 104 244 345 2.55e-17 83.6
Msa0541940 MtrunA17_Chr3g0077381 36.559 93 59 0 20 112 34 126 1.76e-14 75.1
Msa0541940 MtrunA17_Chr7g0233531 39.326 89 52 1 22 110 2 88 8.92e-17 80.1
Msa0541940 MtrunA17_Chr7g0233531 34.127 126 77 2 274 393 143 268 6.52e-14 71.6
Msa0541940 MtrunA17_Chr3g0077421 37.241 145 71 6 257 391 65 199 2.59e-16 77.4
Msa0541940 MtrunA17_Chr3g0077441 37.241 145 71 6 257 391 65 199 2.59e-16 77.4
Msa0541940 MtrunA17_Chr1g0154041 39.130 92 55 1 4 95 14 104 8.33e-16 79.7
Msa0541940 MtrunA17_Chr3g0077361 33.981 103 67 1 3 104 37 139 9.32e-16 79.3
Msa0541940 MtrunA17_Chr3g0077361 34.848 132 75 4 264 391 380 504 1.14e-14 75.9
Msa0541940 MtrunA17_Chr3g0077361 37.500 72 45 0 3 74 286 357 2.63e-12 68.6
Msa0541940 MtrunA17_Chr3g0077361 36.538 156 74 9 274 417 157 299 1.30e-11 66.2
Msa0541940 MtrunA17_Chr6g0467351 37.500 112 67 2 6 116 15 124 1.07e-14 73.2
Msa0541940 MtrunA17_Chr3g0077431 35.821 134 70 5 267 391 72 198 6.30e-14 70.5
Msa0541940 MtrunA17_Chr1g0163181 38.614 101 56 2 4 104 7 101 1.84e-13 72.0
Msa0541940 MtrunA17_Chr1g0163251 37.624 101 57 2 4 104 7 101 1.87e-13 71.6
Msa0541940 MtrunA17_Chr1g0163191 37.624 101 57 2 4 104 7 101 3.09e-13 67.4
Msa0541940 MtrunA17_Chr1g0154161 38.889 90 55 0 6 95 30 119 1.77e-12 68.2
Msa0541940 MtrunA17_Chr1g0154131 41.026 78 46 0 18 95 194 271 8.91e-12 66.6
Msa0541940 MtrunA17_Chr1g0154131 37.778 90 55 1 6 95 26 114 1.69e-11 65.9
Msa0541940 MtrunA17_Chr1g0163091 27.703 148 97 3 265 410 2 141 1.46e-11 62.8
Msa0541940 MtrunA17_Chr1g0171611 37.374 99 60 1 6 104 9 105 2.15e-11 64.3
Msa0541940 MtrunA17_Chr1g0154171 38.889 90 54 1 7 95 22 111 2.62e-11 64.7
Msa0541940 MtrunA17_Chr1g0154151 40.541 74 44 0 22 95 20 93 6.03e-11 63.5
Msa0541940 MtrunA17_Chr1g0163231 36.364 99 61 1 6 104 9 105 6.32e-11 63.2
Msa0541940 MtrunA17_Chr1g0154251 38.462 78 48 0 18 95 38 115 8.13e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541940 AT3G18990.1 50.382 393 139 7 1 391 1 339 7.98e-126 368
Msa0541940 AT3G18990.2 50.125 399 140 8 1 394 1 345 1.48e-124 366
Msa0541940 AT1G49480.3 66.061 165 53 2 229 391 61 224 2.97e-72 227
Msa0541940 AT1G49480.1 66.061 165 53 2 229 391 61 224 2.97e-72 227
Msa0541940 AT1G49480.2 66.061 165 53 2 229 391 61 224 2.97e-72 227
Msa0541940 AT4G01580.1 39.806 103 62 0 2 104 26 128 3.58e-21 91.3
Msa0541940 AT3G18960.2 37.864 103 64 0 2 104 26 128 2.05e-20 89.0
Msa0541940 AT3G18960.1 37.864 103 64 0 2 104 26 128 2.33e-20 89.4
Msa0541940 AT1G49475.1 33.803 142 87 3 2 137 27 167 5.32e-18 82.0
Msa0541940 AT3G18960.3 34.524 84 55 0 21 104 8 91 1.35e-13 68.9
Msa0541940 AT2G16210.2 34.314 102 62 4 5 102 18 118 7.91e-11 62.0

Find 127 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATTCATCAAATGCTTTA+AGG 0.135808 4_1:-25996863 Msa0541940:five_prime_UTR
GTCTACCGAGTTGGCATTTC+TGG 0.137922 4_1:+25995058 None:intergenic
CAAAGCAACTTTCTCATTTC+CGG 0.157107 4_1:+25997123 None:intergenic
ATGCTTTAAGGCTTTGATTT+TGG 0.173014 4_1:-25996851 Msa0541940:five_prime_UTR
AAAAGGTAGACAACAAATTT+TGG 0.211575 4_1:-25995478 Msa0541940:CDS
AAGAACTTGAATGGCGTTTC+AGG 0.211639 4_1:-25994505 Msa0541940:CDS
GCACTGCAGAATCTGTTTAA+TGG 0.280689 4_1:-25995128 Msa0541940:CDS
ACGACCCTCCTATTTATATA+GGG 0.302805 4_1:-25994647 Msa0541940:CDS
CTAAACTTAATAGCATAAAC+TGG 0.308905 4_1:-25995103 Msa0541940:CDS
TTTCATCTAATTTCTTCAAA+TGG 0.330336 4_1:-25994107 Msa0541940:three_prime_UTR
TAAACTCAACTACATTAAAC+TGG 0.334276 4_1:+25995009 None:intergenic
AGTAATGAAGCGTCTCTCTT+TGG 0.337462 4_1:-25995305 Msa0541940:CDS
TTTCGCTGGAGAACAATTTA+GGG 0.350563 4_1:-25994387 Msa0541940:CDS
TTGCTTTGGAAAATCCAAAC+TGG 0.371344 4_1:-25997108 Msa0541940:five_prime_UTR
CATGTTCAGAAGGAGGTTCC+TGG 0.372328 4_1:+25994809 None:intergenic
ATTGAAAGATGAAAGCTTTG+AGG 0.379325 4_1:+25996892 None:intergenic
CGGAAATGAGAAAGTTGCTT+TGG 0.380233 4_1:-25997122 Msa0541940:five_prime_UTR
AGCTAATCACACACAAGAAA+AGG 0.380477 4_1:+25994131 None:intergenic
TTCATCTAATTTCTTCAAAT+GGG 0.391881 4_1:-25994106 Msa0541940:three_prime_UTR
TACGACCCTCCTATTTATAT+AGG 0.394690 4_1:-25994648 Msa0541940:CDS
CAACAAGTATCCAGTACTAA+TGG 0.397395 4_1:+25995418 None:intergenic
TAGCTCTACCACCTCTATAA+AGG 0.406566 4_1:+25994434 None:intergenic
TGAGTCACCAACTCGTTATT+AGG 0.410373 4_1:-25997054 Msa0541940:five_prime_UTR
GCAGAACCAACATGTGAAAC+TGG 0.412096 4_1:-25994254 Msa0541940:CDS
GACCTATATCTCTGGTCAAC+TGG 0.412834 4_1:+25995033 None:intergenic
CATTAGTACTGGATACTTGT+TGG 0.415047 4_1:-25995417 Msa0541940:CDS
GTTTCCGTTTGGAGTTTGTT+TGG 0.420376 4_1:+25997174 None:intergenic
TGGTTCTGCTGCAACGGCTG+TGG 0.421147 4_1:+25994268 None:intergenic
TTGCAAAACAAAGCAGTTAC+CGG 0.427667 4_1:-25995194 Msa0541940:CDS
TGAAGATTCTGTTGAAATCA+TGG 0.428155 4_1:-25995249 Msa0541940:CDS
ATGAGGTAGAAATGCGCAAT+AGG 0.433073 4_1:-25994783 Msa0541940:CDS
GAAACAACAAAAGTGTGGTT+TGG 0.438389 4_1:-25997156 Msa0541940:five_prime_UTR
ACACACAAGAAAAGGGATAC+TGG 0.440613 4_1:+25994139 None:intergenic
TATTTCCTCATAAAATCATC+TGG 0.445116 4_1:+25995569 None:intergenic
GCTGTAAAGAAGAGGAAATC+AGG 0.445746 4_1:-25994927 Msa0541940:intron
GGTTCTGCTGCAACGGCTGT+GGG 0.447673 4_1:+25994269 None:intergenic
AACCAGTTGACCAGAGATAT+AGG 0.450024 4_1:-25995035 Msa0541940:CDS
CACTCTTCAAGCTAAGCAAC+TGG 0.450976 4_1:-25996766 Msa0541940:intron
AACCATCTAATCCTTTCTGT+CGG 0.454042 4_1:-25994678 Msa0541940:CDS
GTGGCGTGTAGGAATGAAAA+AGG 0.456416 4_1:-25995495 Msa0541940:CDS
ACCATCTAATCCTTTCTGTC+GGG 0.457399 4_1:-25994677 Msa0541940:CDS
AGCTTTCATCTTTCAATCAA+AGG 0.458663 4_1:-25996886 Msa0541940:five_prime_UTR
ATCAAACTTCAAATCTCTGA+TGG 0.460034 4_1:-25994478 Msa0541940:CDS
ACCCGACAGAAAGGATTAGA+TGG 0.462119 4_1:+25994676 None:intergenic
GCTTTCATCTTTCAATCAAA+GGG 0.464016 4_1:-25996885 Msa0541940:five_prime_UTR
CCAGTTCGCTGCCTTTATAG+AGG 0.464193 4_1:-25994445 Msa0541940:CDS
CCTCTATAAAGGCAGCGAAC+TGG 0.468295 4_1:+25994445 None:intergenic
CAAATTCATTCCAGCCATCA+AGG 0.469351 4_1:+25995453 None:intergenic
TTAAACAGATTCTGCAGTGC+TGG 0.470577 4_1:+25995131 None:intergenic
GAGTTTGTTTGGAACATAGT+TGG 0.479789 4_1:+25997185 None:intergenic
TGGTAGAGCTAAGTTAAGCC+AGG 0.481112 4_1:-25994422 Msa0541940:CDS
TTGTTGGTATTCAAATATGA+AGG 0.488579 4_1:-25995401 Msa0541940:CDS
ACATGTTGGTTCTGCTGCAA+CGG 0.490310 4_1:+25994262 None:intergenic
ACACGCCACGCACTGCCATC+AGG 0.495919 4_1:+25995509 None:intergenic
TCTAGCTTATATCAGAAACT+TGG 0.498866 4_1:-25993977 Msa0541940:three_prime_UTR
TTTGCAATAGGCTAGGAGTA+AGG 0.503132 4_1:+25995210 None:intergenic
AGAACAAGCTTATGAAATGA+AGG 0.504843 4_1:+25996795 None:intergenic
CGTTTACCAGTTTCACATGT+TGG 0.506129 4_1:+25994248 None:intergenic
TTTGCAGAGAAGAACTTGAA+TGG 0.506953 4_1:-25994514 Msa0541940:CDS
AGCATAAACTGGGGTGAAGG+TGG 0.512276 4_1:-25995092 Msa0541940:CDS
AAGTCATCATCTTGAAATGT+TGG 0.517522 4_1:+25994063 None:intergenic
GCTAATCACACACAAGAAAA+GGG 0.517703 4_1:+25994132 None:intergenic
CGATGTGTGTGTGTTTGAGC+TGG 0.519261 4_1:-25994359 Msa0541940:CDS
GCGCGCGGCTACTGATGAAA+AGG 0.522792 4_1:-25994961 Msa0541940:CDS
GAAGCGAGGTGATGCTGAAA+CGG 0.522835 4_1:+25994223 None:intergenic
ACCTCATCTTCATGTTCAGA+AGG 0.527271 4_1:+25994799 None:intergenic
TGTTCCAAACAAACTCCAAA+CGG 0.528885 4_1:-25997178 Msa0541940:five_prime_UTR
AAACTGGAGACCTATATCTC+TGG 0.534467 4_1:+25995025 None:intergenic
TGGTGGTGATATTTCTCCAA+TGG 0.535973 4_1:-25995546 Msa0541940:CDS
TTTCGTATTACAGAGGATGA+AGG 0.541809 4_1:-25994301 Msa0541940:CDS
TGCTTAGCTTGAAGAGTGGA+GGG 0.543127 4_1:+25996771 None:intergenic
AAAGTTGAGCTACGACCTAT+CGG 0.547743 4_1:+25994170 None:intergenic
AACTCGTTATTAGGCCAAGT+TGG 0.549255 4_1:-25997045 Msa0541940:five_prime_UTR
AACGAAGGAAGTAGTGCTGC+AGG 0.550293 4_1:-25994332 Msa0541940:CDS
CTGGAGAACAATTTAGGGGA+AGG 0.550360 4_1:-25994382 Msa0541940:CDS
GATGGCAGTGCGTGGCGTGT+AGG 0.551984 4_1:-25995506 Msa0541940:CDS
AGTAAGTTTATCAGCTGAGC+CGG 0.556292 4_1:+25995175 None:intergenic
AGGCTAGGAGTAAGGTTCGT+AGG 0.558211 4_1:+25995218 None:intergenic
AATAGCATAAACTGGGGTGA+AGG 0.559689 4_1:-25995095 Msa0541940:CDS
GCGAAAACTCATACCACCCC+TGG 0.559736 4_1:+25994404 None:intergenic
TTCTTCTCTGCAAAGCAAGA+TGG 0.561035 4_1:+25994523 None:intergenic
CAACTGGTTGTCTACCGAGT+TGG 0.563166 4_1:+25995049 None:intergenic
TGCAACGGCTGTGGGCTCAA+CGG 0.564438 4_1:+25994277 None:intergenic
CGACCCTCCTATTTATATAG+GGG 0.565038 4_1:-25994646 Msa0541940:CDS
TGCTTTGGAAAATCCAAACT+GGG 0.565994 4_1:-25997107 Msa0541940:five_prime_UTR
GGTAGAGCTAAGTTAAGCCA+GGG 0.566840 4_1:-25994421 Msa0541940:CDS
CGTAGGACAACCCGACAGAA+AGG 0.567258 4_1:+25994667 None:intergenic
TGATAGTTAATCTCAGATGT+AGG 0.567814 4_1:+25995344 None:intergenic
TTGCTTAGCTTGAAGAGTGG+AGG 0.568784 4_1:+25996770 None:intergenic
AGAAAACTGCTGTAAAGAAG+AGG 0.569808 4_1:-25994935 Msa0541940:CDS
AGATTCTGCAGTGCTGGAGG+CGG 0.572818 4_1:+25995137 None:intergenic
AGCTTATGAAATGAAGGAGA+AGG 0.572983 4_1:+25996801 None:intergenic
TCCTTCCAGAAATGCCAACT+CGG 0.578453 4_1:-25995063 Msa0541940:CDS
ACCGAGTTGGCATTTCTGGA+AGG 0.582778 4_1:+25995062 None:intergenic
TAAACTTAATAGCATAAACT+GGG 0.585444 4_1:-25995102 Msa0541940:CDS
TATATAAATAGGAGGGTCGT+AGG 0.588497 4_1:+25994650 None:intergenic
TAACGAGTTGGTGACTCAGT+GGG 0.589671 4_1:+25997059 None:intergenic
GCTTCATTACTTCTTTGCGC+AGG 0.592136 4_1:+25995317 None:intergenic
GTTCGCTGCCTTTATAGAGG+TGG 0.593487 4_1:-25994442 Msa0541940:CDS
TCAAACTTCAAATCTCTGAT+GGG 0.594893 4_1:-25994477 Msa0541940:CDS
TCCTTCTGAACATGAAGATG+AGG 0.595862 4_1:-25994800 Msa0541940:CDS
GGAACTTTGAGAGTAACCAT+TGG 0.597271 4_1:+25995530 None:intergenic
AACAGCTGAAGAAAGAGAGA+AGG 0.598211 4_1:-25994725 Msa0541940:CDS
AACTTGGCCTAATAACGAGT+TGG 0.599053 4_1:+25997047 None:intergenic
CAGTTGCTTAGCTTGAAGAG+TGG 0.602007 4_1:+25996767 None:intergenic
TCATCTTCATGTTCAGAAGG+AGG 0.602398 4_1:+25994802 None:intergenic
AAATTAACTTTGTTTCCGAT+AGG 0.605865 4_1:-25994185 Msa0541940:exon
AACAGATTCTGCAGTGCTGG+AGG 0.607091 4_1:+25995134 None:intergenic
GCATAAACTGGGGTGAAGGT+GGG 0.609417 4_1:-25995091 Msa0541940:CDS
GTTTGAGCTGGTTGCAACGA+AGG 0.613778 4_1:-25994347 Msa0541940:CDS
TTCGCTGGAGAACAATTTAG+GGG 0.616292 4_1:-25994386 Msa0541940:CDS
GGAGGCGGACGAGACTTGCA+AGG 0.616432 4_1:+25995152 None:intergenic
TACTGTATTTCGTATTACAG+AGG 0.616530 4_1:-25994308 Msa0541940:CDS
TAATCAGTTTAGTTGAAGCG+AGG 0.620183 4_1:+25994209 None:intergenic
TTTATGAAAGTGCATCCGCA+AGG 0.624536 4_1:-25994759 Msa0541940:CDS
AAGTTCCTGATGGCAGTGCG+TGG 0.628489 4_1:-25995514 Msa0541940:CDS
GTTACTCTCAAAGTTCCTGA+TGG 0.635054 4_1:-25995524 Msa0541940:CDS
AAATCTCTGATGGGAGACAG+TGG 0.637373 4_1:-25994468 Msa0541940:CDS
ATAACGAGTTGGTGACTCAG+TGG 0.662512 4_1:+25997058 None:intergenic
TACAAACCAAGTTAAAACAG+CGG 0.671161 4_1:+25994014 None:intergenic
TGAAGAGTTGAAGTTGCGCG+CGG 0.674734 4_1:-25994976 Msa0541940:CDS
GAGCTAAGTTAAGCCAGGGG+TGG 0.681213 4_1:-25994417 Msa0541940:CDS
AAAGAATATTGAGAGAGTGA+TGG 0.682434 4_1:-25996946 Msa0541940:five_prime_UTR
GACCCTCCTATTTATATAGG+GGG 0.685460 4_1:-25994645 Msa0541940:CDS
AAACGGAAACAACAAAAGTG+TGG 0.691612 4_1:-25997161 Msa0541940:five_prime_UTR
GTAGAGCTAAGTTAAGCCAG+GGG 0.733227 4_1:-25994420 Msa0541940:CDS
AAACTTAATAGCATAAACTG+GGG 0.737966 4_1:-25995101 Msa0541940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTGTAG+TGG - chr4_1:25994483-25994502 Msa0541940:CDS 10.0%
!!! TATTTATTTATTTTTGTAGT+GGG - chr4_1:25994484-25994503 Msa0541940:CDS 10.0%
!!! TTTAAATTTTTAGATTAGAT+GGG - chr4_1:25994619-25994638 Msa0541940:intron 10.0%
!!! TTCGATTTTTTTTTTTTAAA+TGG - chr4_1:25995042-25995061 Msa0541940:CDS 10.0%
!!! ATCTTTTGTGTATTATTTTT+TGG - chr4_1:25994421-25994440 Msa0541940:CDS 15.0%
!! AAAATTTAAACTTGATGAAA+GGG + chr4_1:25994609-25994628 None:intergenic 15.0%
!! AAAAATTTAAACTTGATGAA+AGG + chr4_1:25994610-25994629 None:intergenic 15.0%
!!! GTTTAAATTTTTAGATTAGA+TGG - chr4_1:25994618-25994637 Msa0541940:intron 15.0%
!!! AAAAGAGTCATAAATATTTT+TGG - chr4_1:25994651-25994670 Msa0541940:CDS 15.0%
!!! AAAGAGTCATAAATATTTTT+GGG - chr4_1:25994652-25994671 Msa0541940:CDS 15.0%
!! ATATAATTAATAGTGTACTT+TGG - chr4_1:25994914-25994933 Msa0541940:intron 15.0%
!! TAAAAAAAAAAAATCGAACT+CGG + chr4_1:25995040-25995059 None:intergenic 15.0%
!!! ACACAAAAGATTGAATTTTT+AGG + chr4_1:25994412-25994431 None:intergenic 20.0%
!!! TTTAAAGTCAAATCATAAAG+TGG - chr4_1:25994702-25994721 Msa0541940:CDS 20.0%
!! TTAAAGTCAAATCATAAAGT+GGG - chr4_1:25994703-25994722 Msa0541940:CDS 20.0%
!!! ATCCTTTTTTTTTTTTTGTG+TGG + chr4_1:25994809-25994828 None:intergenic 20.0%
!!! AACTTGAAATTAGAGTTTTT+TGG - chr4_1:25994836-25994855 Msa0541940:intron 20.0%
!! ACATTGAAATAGTTTAAATC+AGG - chr4_1:25995009-25995028 Msa0541940:CDS 20.0%
!! AAAAAAAAAAAATCGAACTC+GGG + chr4_1:25995039-25995058 None:intergenic 20.0%
!! TAAACTTAATAGCATAAACT+GGG - chr4_1:25996046-25996065 Msa0541940:intron 20.0%
!! CTTAGTTATTGTTTATAACT+CGG - chr4_1:25996245-25996264 Msa0541940:intron 20.0%
!! GAATAAAAAAAAAGTTGTGT+TGG + chr4_1:25996552-25996571 None:intergenic 20.0%
!! TTTCATCTAATTTCTTCAAA+TGG - chr4_1:25997041-25997060 Msa0541940:five_prime_UTR 20.0%
!! TTCATCTAATTTCTTCAAAT+GGG - chr4_1:25997042-25997061 Msa0541940:five_prime_UTR 20.0%
! ATAAAAAAAAGACACCAACT+TGG + chr4_1:25994120-25994139 None:intergenic 25.0%
!!! CAATGGTTTTTACTTTTTGA+AGG + chr4_1:25994146-25994165 None:intergenic 25.0%
!!! GCTTTTTTGACAAAAAACAA+TGG + chr4_1:25994163-25994182 None:intergenic 25.0%
!! TTCTTAGATGAATTTTTGCA+TGG - chr4_1:25994459-25994478 Msa0541940:CDS 25.0%
!!! AATTTTGATAGAGTGAAGAA+AGG - chr4_1:25994515-25994534 Msa0541940:CDS 25.0%
!!! ATTTTGATAGAGTGAAGAAA+GGG - chr4_1:25994516-25994535 Msa0541940:CDS 25.0%
!!! AAAGGGTTTGATAATTTTTC+TGG - chr4_1:25994533-25994552 Msa0541940:intron 25.0%
!!! AAGGGTTTGATAATTTTTCT+GGG - chr4_1:25994534-25994553 Msa0541940:intron 25.0%
!!! TCATAAATATTTTTGGGTCA+AGG - chr4_1:25994658-25994677 Msa0541940:CDS 25.0%
! TAAAGTCAAATCATAAAGTG+GGG - chr4_1:25994704-25994723 Msa0541940:CDS 25.0%
! CTCCACACAAAAAAAAAAAA+AGG - chr4_1:25994804-25994823 Msa0541940:CDS 25.0%
! TTGAAATAGTTTAAATCAGG+AGG - chr4_1:25995012-25995031 Msa0541940:CDS 25.0%
!! AAAAGATATAGGTTTAGTTC+AGG + chr4_1:25995315-25995334 None:intergenic 25.0%
! GATAGATTCGAAAAAGATAT+AGG + chr4_1:25995326-25995345 None:intergenic 25.0%
!!! TTGCACTTTTTGAAATGAAA+TGG - chr4_1:25995486-25995505 Msa0541940:CDS 25.0%
!!! TGGTGTTTTTTATACTATCA+TGG - chr4_1:25995506-25995525 Msa0541940:CDS 25.0%
! CATGGCAATTTACAAATATT+TGG - chr4_1:25995524-25995543 Msa0541940:CDS 25.0%
! TGCAATTCACAAATCATATT+AGG + chr4_1:25995552-25995571 None:intergenic 25.0%
! TATTTCCTCATAAAATCATC+TGG + chr4_1:25995582-25995601 None:intergenic 25.0%
!! GATGATTTTATGAGGAAATA+TGG - chr4_1:25995582-25995601 Msa0541940:intron 25.0%
!! AAAAGGTAGACAACAAATTT+TGG - chr4_1:25995670-25995689 Msa0541940:intron 25.0%
! CAAAAATATTCCATTAGTAC+TGG - chr4_1:25995720-25995739 Msa0541940:intron 25.0%
! TTGTTGGTATTCAAATATGA+AGG - chr4_1:25995747-25995766 Msa0541940:intron 25.0%
!! TCTTACTATTTTCGAAGAAA+TGG - chr4_1:25995872-25995891 Msa0541940:intron 25.0%
! CTAAACTTAATAGCATAAAC+TGG - chr4_1:25996045-25996064 Msa0541940:intron 25.0%
! AAACTTAATAGCATAAACTG+GGG - chr4_1:25996047-25996066 Msa0541940:intron 25.0%
! TAAACTCAACTACATTAAAC+TGG + chr4_1:25996142-25996161 None:intergenic 25.0%
!! AAATTAACTTTGTTTCCGAT+AGG - chr4_1:25996963-25996982 Msa0541940:five_prime_UTR 25.0%
!!! GTGGTTTGGTTTTTTAAAAC+CGG - chr4_1:25994006-25994025 Msa0541940:three_prime_UTR 30.0%
AAAGAATATTGAGAGAGTGA+TGG - chr4_1:25994202-25994221 Msa0541940:CDS 30.0%
ATTGAAAGATGAAAGCTTTG+AGG + chr4_1:25994259-25994278 None:intergenic 30.0%
AGCTTTCATCTTTCAATCAA+AGG - chr4_1:25994262-25994281 Msa0541940:CDS 30.0%
GCTTTCATCTTTCAATCAAA+GGG - chr4_1:25994263-25994282 Msa0541940:CDS 30.0%
GTCATTCATCAAATGCTTTA+AGG - chr4_1:25994285-25994304 Msa0541940:CDS 30.0%
!!! ATGCTTTAAGGCTTTGATTT+TGG - chr4_1:25994297-25994316 Msa0541940:CDS 30.0%
AGAACAAGCTTATGAAATGA+AGG + chr4_1:25994356-25994375 None:intergenic 30.0%
AATATATGTGTGTTGCATGT+TGG + chr4_1:25994753-25994772 None:intergenic 30.0%
! TTTTACTGGTGGAATTTTTG+AGG - chr4_1:25994874-25994893 Msa0541940:intron 30.0%
!!! TTTCGTGGGTTTGTTTTTAT+CGG + chr4_1:25995171-25995190 None:intergenic 30.0%
AGCATATGTTAGTAAATTGC+TGG + chr4_1:25995230-25995249 None:intergenic 30.0%
! ATATGATTTGTGAATTGCAG+AGG - chr4_1:25995553-25995572 Msa0541940:CDS 30.0%
! GATTTTATGAGGAAATATGG+TGG - chr4_1:25995585-25995604 Msa0541940:intron 30.0%
!!! AACAAATTTTGGTTCCTTGA+TGG - chr4_1:25995681-25995700 Msa0541940:intron 30.0%
TGATAGTTAATCTCAGATGT+AGG + chr4_1:25995807-25995826 None:intergenic 30.0%
TGAAGATTCTGTTGAAATCA+TGG - chr4_1:25995899-25995918 Msa0541940:intron 30.0%
!!! TAACTGCTTTGTTTTGCAAT+AGG + chr4_1:25995953-25995972 None:intergenic 30.0%
! AAATGATTTTGCTGCATTGA+TGG + chr4_1:25996449-25996468 None:intergenic 30.0%
ATCAAACTTCAAATCTCTGA+TGG - chr4_1:25996670-25996689 Msa0541940:intron 30.0%
TCAAACTTCAAATCTCTGAT+GGG - chr4_1:25996671-25996690 Msa0541940:intron 30.0%
TACTGTATTTCGTATTACAG+AGG - chr4_1:25996840-25996859 Msa0541940:five_prime_UTR 30.0%
AAGTCATCATCTTGAAATGT+TGG + chr4_1:25997088-25997107 None:intergenic 30.0%
TACAAACCAAGTTAAAACAG+CGG + chr4_1:25997137-25997156 None:intergenic 30.0%
! TCTAGCTTATATCAGAAACT+TGG - chr4_1:25997171-25997190 Msa0541940:five_prime_UTR 30.0%
TGTTCCAAACAAACTCCAAA+CGG - chr4_1:25993970-25993989 Msa0541940:three_prime_UTR 35.0%
!!! ACACTTTTGTTGTTTCCGTT+TGG + chr4_1:25993988-25994007 None:intergenic 35.0%
AAACGGAAACAACAAAAGTG+TGG - chr4_1:25993987-25994006 Msa0541940:three_prime_UTR 35.0%
! GAAACAACAAAAGTGTGGTT+TGG - chr4_1:25993992-25994011 Msa0541940:three_prime_UTR 35.0%
CAAAGCAACTTTCTCATTTC+CGG + chr4_1:25994028-25994047 None:intergenic 35.0%
!! TTGCTTTGGAAAATCCAAAC+TGG - chr4_1:25994040-25994059 Msa0541940:three_prime_UTR 35.0%
!! TGCTTTGGAAAATCCAAACT+GGG - chr4_1:25994041-25994060 Msa0541940:three_prime_UTR 35.0%
AGCTTATGAAATGAAGGAGA+AGG + chr4_1:25994350-25994369 None:intergenic 35.0%
!! ATTTTTAGATTAGATGGGCG+TGG - chr4_1:25994624-25994643 Msa0541940:intron 35.0%
!!! AGAGTTTTTTGGATGACTGA+TGG - chr4_1:25994847-25994866 Msa0541940:intron 35.0%
!!! GAGTTTTTTGGATGACTGAT+GGG - chr4_1:25994848-25994867 Msa0541940:intron 35.0%
GAAAGGGAAACAATACAACA+AGG - chr4_1:25995118-25995137 Msa0541940:CDS 35.0%
! GGAGGTGTAACTTATATAAG+CGG + chr4_1:25995146-25995165 None:intergenic 35.0%
!!! TTCGTGGGTTTGTTTTTATC+GGG + chr4_1:25995170-25995189 None:intergenic 35.0%
! AATTGTTTCTCCCTGTAACT+CGG + chr4_1:25995272-25995291 None:intergenic 35.0%
!! AAGTTCCGTGATTCTGAAAT+TGG - chr4_1:25995416-25995435 Msa0541940:CDS 35.0%
TTGTACTAAGTTCGTCGAAT+CGG + chr4_1:25995459-25995478 None:intergenic 35.0%
CAACAAGTATCCAGTACTAA+TGG + chr4_1:25995733-25995752 None:intergenic 35.0%
! CATTAGTACTGGATACTTGT+TGG - chr4_1:25995731-25995750 Msa0541940:intron 35.0%
TTGCAAAACAAAGCAGTTAC+CGG - chr4_1:25995954-25995973 Msa0541940:intron 35.0%
AGAAAACTGCTGTAAAGAAG+AGG - chr4_1:25996213-25996232 Msa0541940:intron 35.0%
AACCATCTAATCCTTTCTGT+CGG - chr4_1:25996470-25996489 Msa0541940:intron 35.0%
TATATAAATAGGAGGGTCGT+AGG + chr4_1:25996501-25996520 None:intergenic 35.0%
TACGACCCTCCTATTTATAT+AGG - chr4_1:25996500-25996519 Msa0541940:intron 35.0%
ACGACCCTCCTATTTATATA+GGG - chr4_1:25996501-25996520 Msa0541940:intron 35.0%
TATGCACCCCCTATATAAAT+AGG + chr4_1:25996512-25996531 None:intergenic 35.0%
! TTTATATAGGGGGTGCATAA+TGG - chr4_1:25996513-25996532 Msa0541940:intron 35.0%
AGATGGTAGATACTGGAAAA+CGG + chr4_1:25996611-25996630 None:intergenic 35.0%
TTTGCAGAGAAGAACTTGAA+TGG - chr4_1:25996634-25996653 Msa0541940:intron 35.0%
! TTTTCGCTGGAGAACAATTT+AGG - chr4_1:25996760-25996779 Msa0541940:intron 35.0%
TTTCGCTGGAGAACAATTTA+GGG - chr4_1:25996761-25996780 Msa0541940:intron 35.0%
TTTCGTATTACAGAGGATGA+AGG - chr4_1:25996847-25996866 Msa0541940:five_prime_UTR 35.0%
TAATCAGTTTAGTTGAAGCG+AGG + chr4_1:25996942-25996961 None:intergenic 35.0%
GCTAATCACACACAAGAAAA+GGG + chr4_1:25997019-25997038 None:intergenic 35.0%
AGCTAATCACACACAAGAAA+AGG + chr4_1:25997020-25997039 None:intergenic 35.0%
! GTTTCCGTTTGGAGTTTGTT+TGG + chr4_1:25993977-25993996 None:intergenic 40.0%
CGGAAATGAGAAAGTTGCTT+TGG - chr4_1:25994026-25994045 Msa0541940:three_prime_UTR 40.0%
! AAACAGAGGTTTTCCCAGTT+TGG + chr4_1:25994057-25994076 None:intergenic 40.0%
TGAGTCACCAACTCGTTATT+AGG - chr4_1:25994094-25994113 Msa0541940:three_prime_UTR 40.0%
AACTTGGCCTAATAACGAGT+TGG + chr4_1:25994104-25994123 None:intergenic 40.0%
AACTCGTTATTAGGCCAAGT+TGG - chr4_1:25994103-25994122 Msa0541940:three_prime_UTR 40.0%
ACTTGATGAAAGGGATGACA+AGG + chr4_1:25994600-25994619 None:intergenic 40.0%
! CAAGGTCTCAAGATTAGTCA+TGG - chr4_1:25994676-25994695 Msa0541940:CDS 40.0%
GTCAAATCATAAAGTGGGGT+TGG - chr4_1:25994708-25994727 Msa0541940:CDS 40.0%
GTGTGTTGCATGTTGGAAAT+AGG + chr4_1:25994746-25994765 None:intergenic 40.0%
!!! TGACTGATGGGTTGTTTTAC+TGG - chr4_1:25994860-25994879 Msa0541940:intron 40.0%
TGTGCTAGGTTGTAACATGA+AGG - chr4_1:25994963-25994982 Msa0541940:CDS 40.0%
GTTGTAACATGAAGGTAGCT+CGG - chr4_1:25994971-25994990 Msa0541940:CDS 40.0%
AAAAAACTCGTGGCAAGGAA+AGG - chr4_1:25995101-25995120 Msa0541940:CDS 40.0%
AAAAACTCGTGGCAAGGAAA+GGG - chr4_1:25995102-25995121 Msa0541940:CDS 40.0%
AACCCACGAAAACCCAAATA+AGG - chr4_1:25995180-25995199 Msa0541940:CDS 40.0%
!!! TGCCTTATTTGGGTTTTCGT+GGG + chr4_1:25995185-25995204 None:intergenic 40.0%
!!! ATGCCTTATTTGGGTTTTCG+TGG + chr4_1:25995186-25995205 None:intergenic 40.0%
!! AAACCCAAATAAGGCATCGA+TGG - chr4_1:25995189-25995208 Msa0541940:CDS 40.0%
!! AACCCAAATAAGGCATCGAT+GGG - chr4_1:25995190-25995209 Msa0541940:CDS 40.0%
!! TACCCATCGATGCCTTATTT+GGG + chr4_1:25995195-25995214 None:intergenic 40.0%
! TTACCCATCGATGCCTTATT+TGG + chr4_1:25995196-25995215 None:intergenic 40.0%
AAATGCATTAGCCGAGTTAC+AGG - chr4_1:25995258-25995277 Msa0541940:CDS 40.0%
AATGCATTAGCCGAGTTACA+GGG - chr4_1:25995259-25995278 Msa0541940:CDS 40.0%
GAGAAACAATTCCCATGCAT+TGG - chr4_1:25995281-25995300 Msa0541940:CDS 40.0%
AAACAATTCCCATGCATTGG+AGG - chr4_1:25995284-25995303 Msa0541940:CDS 40.0%
!! TGTCAGATTAGCTTGAGTGT+TGG - chr4_1:25995372-25995391 Msa0541940:CDS 40.0%
! GGCTTCCAGATGATTTTATG+AGG - chr4_1:25995574-25995593 Msa0541940:CDS 40.0%
! TGGTGGTGATATTTCTCCAA+TGG - chr4_1:25995602-25995621 Msa0541940:intron 40.0%
! GGAACTTTGAGAGTAACCAT+TGG + chr4_1:25995621-25995640 None:intergenic 40.0%
GTTACTCTCAAAGTTCCTGA+TGG - chr4_1:25995624-25995643 Msa0541940:intron 40.0%
!!! AATTTTGGTTCCTTGATGGC+TGG - chr4_1:25995685-25995704 Msa0541940:intron 40.0%
CAAATTCATTCCAGCCATCA+AGG + chr4_1:25995698-25995717 None:intergenic 40.0%
! AGTAATGAAGCGTCTCTCTT+TGG - chr4_1:25995843-25995862 Msa0541940:intron 40.0%
TTTGCAATAGGCTAGGAGTA+AGG + chr4_1:25995941-25995960 None:intergenic 40.0%
!!! GCTTTGTTTTGCAATAGGCT+AGG + chr4_1:25995948-25995967 None:intergenic 40.0%
AGTAAGTTTATCAGCTGAGC+CGG + chr4_1:25995976-25995995 None:intergenic 40.0%
TTAAACAGATTCTGCAGTGC+TGG + chr4_1:25996020-25996039 None:intergenic 40.0%
GCACTGCAGAATCTGTTTAA+TGG - chr4_1:25996020-25996039 Msa0541940:intron 40.0%
AATAGCATAAACTGGGGTGA+AGG - chr4_1:25996053-25996072 Msa0541940:intron 40.0%
AACCAGTTGACCAGAGATAT+AGG - chr4_1:25996113-25996132 Msa0541940:intron 40.0%
AAACTGGAGACCTATATCTC+TGG + chr4_1:25996126-25996145 None:intergenic 40.0%
GCTGTAAAGAAGAGGAAATC+AGG - chr4_1:25996221-25996240 Msa0541940:intron 40.0%
!! TTTTGAAAGTGCAGATGTCC+AGG - chr4_1:25996321-25996340 Msa0541940:intron 40.0%
TCATCTTCATGTTCAGAAGG+AGG + chr4_1:25996349-25996368 None:intergenic 40.0%
TCCTTCTGAACATGAAGATG+AGG - chr4_1:25996348-25996367 Msa0541940:intron 40.0%
ACCTCATCTTCATGTTCAGA+AGG + chr4_1:25996352-25996371 None:intergenic 40.0%
ATGAGGTAGAAATGCGCAAT+AGG - chr4_1:25996365-25996384 Msa0541940:intron 40.0%
! TTTATGAAAGTGCATCCGCA+AGG - chr4_1:25996389-25996408 Msa0541940:intron 40.0%
! TGTTGCAGTTCTTTTCCTTG+CGG + chr4_1:25996407-25996426 None:intergenic 40.0%
AACAGCTGAAGAAAGAGAGA+AGG - chr4_1:25996423-25996442 Msa0541940:intron 40.0%
ACCATCTAATCCTTTCTGTC+GGG - chr4_1:25996471-25996490 Msa0541940:intron 40.0%
CGACCCTCCTATTTATATAG+GGG - chr4_1:25996502-25996521 Msa0541940:intron 40.0%
GACCCTCCTATTTATATAGG+GGG - chr4_1:25996503-25996522 Msa0541940:intron 40.0%
CACCCCCTATATAAATAGGA+GGG + chr4_1:25996508-25996527 None:intergenic 40.0%
CAAAGCAAGATGGTAGATAC+TGG + chr4_1:25996618-25996637 None:intergenic 40.0%
TTCTTCTCTGCAAAGCAAGA+TGG + chr4_1:25996628-25996647 None:intergenic 40.0%
AAGAACTTGAATGGCGTTTC+AGG - chr4_1:25996643-25996662 Msa0541940:intron 40.0%
! TAGCTCTACCACCTCTATAA+AGG + chr4_1:25996717-25996736 None:intergenic 40.0%
TTCGCTGGAGAACAATTTAG+GGG - chr4_1:25996762-25996781 Msa0541940:intron 40.0%
CGTTTACCAGTTTCACATGT+TGG + chr4_1:25996903-25996922 None:intergenic 40.0%
AAAGTTGAGCTACGACCTAT+CGG + chr4_1:25996981-25997000 None:intergenic 40.0%
ACACACAAGAAAAGGGATAC+TGG + chr4_1:25997012-25997031 None:intergenic 40.0%
GGTGAGTAGCACAAAAACAG+AGG + chr4_1:25994071-25994090 None:intergenic 45.0%
!! TAACGAGTTGGTGACTCAGT+GGG + chr4_1:25994092-25994111 None:intergenic 45.0%
!! ATAACGAGTTGGTGACTCAG+TGG + chr4_1:25994093-25994112 None:intergenic 45.0%
! TGCTTAGCTTGAAGAGTGGA+GGG + chr4_1:25994380-25994399 None:intergenic 45.0%
! TTGCTTAGCTTGAAGAGTGG+AGG + chr4_1:25994381-25994400 None:intergenic 45.0%
! CAGTTGCTTAGCTTGAAGAG+TGG + chr4_1:25994384-25994403 None:intergenic 45.0%
CACTCTTCAAGCTAAGCAAC+TGG - chr4_1:25994382-25994401 Msa0541940:CDS 45.0%
! GGTTTGAGGTTGTGGATGAT+TGG + chr4_1:25994579-25994598 None:intergenic 45.0%
! GATGACAAGGTTTGAGGTTG+TGG + chr4_1:25994587-25994606 None:intergenic 45.0%
GAAAGGGATGACAAGGTTTG+AGG + chr4_1:25994593-25994612 None:intergenic 45.0%
!!! CTGATGGGTTGTTTTACTGG+TGG - chr4_1:25994863-25994882 Msa0541940:intron 45.0%
CTCTGTATGAAGCATGTGCT+AGG - chr4_1:25994949-25994968 Msa0541940:CDS 45.0%
TAACATGAAGGTAGCTCGGT+TGG - chr4_1:25994975-25994994 Msa0541940:CDS 45.0%
!! TAGCTCGGTTGGTGAGTTAA+GGG - chr4_1:25994986-25995005 Msa0541940:CDS 45.0%
CAAGACGCACAAAAAACTCG+TGG - chr4_1:25995091-25995110 Msa0541940:CDS 45.0%
!!! GTGGGTTTGTTTTTATCGGG+CGG + chr4_1:25995167-25995186 None:intergenic 45.0%
GGCAGCCAATTTCAGAATCA+CGG + chr4_1:25995424-25995443 None:intergenic 45.0%
!! TCGAATCGGTTTGGCAAGAT+TGG + chr4_1:25995445-25995464 None:intergenic 45.0%
CTAAGTTCGTCGAATCGGTT+TGG + chr4_1:25995454-25995473 None:intergenic 45.0%
GTGGCGTGTAGGAATGAAAA+AGG - chr4_1:25995653-25995672 Msa0541940:intron 45.0%
GCTTCATTACTTCTTTGCGC+AGG + chr4_1:25995834-25995853 None:intergenic 45.0%
TCCTTCCAGAAATGCCAACT+CGG - chr4_1:25996085-25996104 Msa0541940:intron 45.0%
GACCTATATCTCTGGTCAAC+TGG + chr4_1:25996118-25996137 None:intergenic 45.0%
ACCCGACAGAAAGGATTAGA+TGG + chr4_1:25996475-25996494 None:intergenic 45.0%
GCACCCCCTATATAAATAGG+AGG + chr4_1:25996509-25996528 None:intergenic 45.0%
AAATCTCTGATGGGAGACAG+TGG - chr4_1:25996680-25996699 Msa0541940:intron 45.0%
TGGTAGAGCTAAGTTAAGCC+AGG - chr4_1:25996726-25996745 Msa0541940:intron 45.0%
GGTAGAGCTAAGTTAAGCCA+GGG - chr4_1:25996727-25996746 Msa0541940:intron 45.0%
GTAGAGCTAAGTTAAGCCAG+GGG - chr4_1:25996728-25996747 Msa0541940:intron 45.0%
CTGGAGAACAATTTAGGGGA+AGG - chr4_1:25996766-25996785 Msa0541940:intron 45.0%
!! ACATGTTGGTTCTGCTGCAA+CGG + chr4_1:25996889-25996908 None:intergenic 45.0%
GCAGAACCAACATGTGAAAC+TGG - chr4_1:25996894-25996913 Msa0541940:five_prime_UTR 45.0%
!!! AGCTTGCCGCTGTTTTAACT+TGG - chr4_1:25997128-25997147 Msa0541940:five_prime_UTR 45.0%
!! GTAGCTCGGTTGGTGAGTTA+AGG - chr4_1:25994985-25995004 Msa0541940:CDS 50.0%
CGCACAAAAAACTCGTGGCA+AGG - chr4_1:25995096-25995115 Msa0541940:CDS 50.0%
!!! GGTTTGTTTTTATCGGGCGG+AGG + chr4_1:25995164-25995183 None:intergenic 50.0%
CAATTCCCATGCATTGGAGG+AGG - chr4_1:25995287-25995306 Msa0541940:CDS 50.0%
AGGTTCCTCCTCCAATGCAT+GGG + chr4_1:25995295-25995314 None:intergenic 50.0%
AGGCTAGGAGTAAGGTTCGT+AGG + chr4_1:25995933-25995952 None:intergenic 50.0%
! AACAGATTCTGCAGTGCTGG+AGG + chr4_1:25996017-25996036 None:intergenic 50.0%
AGCATAAACTGGGGTGAAGG+TGG - chr4_1:25996056-25996075 Msa0541940:intron 50.0%
GCATAAACTGGGGTGAAGGT+GGG - chr4_1:25996057-25996076 Msa0541940:intron 50.0%
! ACCGAGTTGGCATTTCTGGA+AGG + chr4_1:25996089-25996108 None:intergenic 50.0%
! GTCTACCGAGTTGGCATTTC+TGG + chr4_1:25996093-25996112 None:intergenic 50.0%
CAACTGGTTGTCTACCGAGT+TGG + chr4_1:25996102-25996121 None:intergenic 50.0%
TGAAGAGTTGAAGTTGCGCG+CGG - chr4_1:25996172-25996191 Msa0541940:intron 50.0%
CATGTTCAGAAGGAGGTTCC+TGG + chr4_1:25996342-25996361 None:intergenic 50.0%
CCTCTATAAAGGCAGCGAAC+TGG + chr4_1:25996706-25996725 None:intergenic 50.0%
CCAGTTCGCTGCCTTTATAG+AGG - chr4_1:25996703-25996722 Msa0541940:intron 50.0%
GTTCGCTGCCTTTATAGAGG+TGG - chr4_1:25996706-25996725 Msa0541940:intron 50.0%
CGATGTGTGTGTGTTTGAGC+TGG - chr4_1:25996789-25996808 Msa0541940:CDS 50.0%
GTTTGAGCTGGTTGCAACGA+AGG - chr4_1:25996801-25996820 Msa0541940:CDS 50.0%
AACGAAGGAAGTAGTGCTGC+AGG - chr4_1:25996816-25996835 Msa0541940:exon 50.0%
GAAGCGAGGTGATGCTGAAA+CGG + chr4_1:25996928-25996947 None:intergenic 50.0%
CAGGTTCCTCCTCCAATGCA+TGG + chr4_1:25995296-25995315 None:intergenic 55.0%
AAGTTCCTGATGGCAGTGCG+TGG - chr4_1:25995634-25995653 Msa0541940:intron 55.0%
! AGATTCTGCAGTGCTGGAGG+CGG + chr4_1:25996014-25996033 None:intergenic 55.0%
CGTAGGACAACCCGACAGAA+AGG + chr4_1:25996484-25996503 None:intergenic 55.0%
GAGCTAAGTTAAGCCAGGGG+TGG - chr4_1:25996731-25996750 Msa0541940:intron 55.0%
GCGAAAACTCATACCACCCC+TGG + chr4_1:25996747-25996766 None:intergenic 55.0%
! GGGGTGGTATGAGTTTTCGC+TGG - chr4_1:25996747-25996766 Msa0541940:intron 55.0%
GCGCGCGGCTACTGATGAAA+AGG - chr4_1:25996187-25996206 Msa0541940:intron 60.0%
TGCAACGGCTGTGGGCTCAA+CGG + chr4_1:25996874-25996893 None:intergenic 60.0%
GGTTCTGCTGCAACGGCTGT+GGG + chr4_1:25996882-25996901 None:intergenic 60.0%
! TGGTTCTGCTGCAACGGCTG+TGG + chr4_1:25996883-25996902 None:intergenic 60.0%
ACACGCCACGCACTGCCATC+AGG + chr4_1:25995642-25995661 None:intergenic 65.0%
GATGGCAGTGCGTGGCGTGT+AGG - chr4_1:25995642-25995661 Msa0541940:intron 65.0%
GGAGGCGGACGAGACTTGCA+AGG + chr4_1:25995999-25996018 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 25993964 25997206 25993964 ID=Msa0541940;Name=Msa0541940
chr4_1 mRNA 25993964 25997206 25993964 ID=Msa0541940-mRNA-1;Parent=Msa0541940;Name=Msa0541940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=380|1|1|1|0.66|0.75|4|237|426
chr4_1 exon 25993964 25994551 25993964 ID=Msa0541940-mRNA-1:exon:7063;Parent=Msa0541940-mRNA-1
chr4_1 exon 25994636 25994835 25994636 ID=Msa0541940-mRNA-1:exon:7062;Parent=Msa0541940-mRNA-1
chr4_1 exon 25994928 25995597 25994928 ID=Msa0541940-mRNA-1:exon:7061;Parent=Msa0541940-mRNA-1
chr4_1 exon 25996767 25997206 25996767 ID=Msa0541940-mRNA-1:exon:7060;Parent=Msa0541940-mRNA-1
chr4_1 five_prime_UTR 25996827 25997206 25996827 ID=Msa0541940-mRNA-1:five_prime_utr;Parent=Msa0541940-mRNA-1
chr4_1 CDS 25996767 25996826 25996767 ID=Msa0541940-mRNA-1:cds;Parent=Msa0541940-mRNA-1
chr4_1 CDS 25994928 25995597 25994928 ID=Msa0541940-mRNA-1:cds;Parent=Msa0541940-mRNA-1
chr4_1 CDS 25994636 25994835 25994636 ID=Msa0541940-mRNA-1:cds;Parent=Msa0541940-mRNA-1
chr4_1 CDS 25994201 25994551 25994201 ID=Msa0541940-mRNA-1:cds;Parent=Msa0541940-mRNA-1
chr4_1 three_prime_UTR 25993964 25994200 25993964 ID=Msa0541940-mRNA-1:three_prime_utr;Parent=Msa0541940-mRNA-1
Gene Sequence

>Msa0541940

ATGCCTTCTCCTTCATTTCATAAGCTTGTTCTACCCTCCACTCTTCAAGCTAAGCAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGTGGTGATATTTCTCCAATGGTTACTCTCAAAGTTCCTGATGGCAGTGCGTGGCGTGTAGGAATGAAAAAGGTAGACAACAAATTTTGGTTCCTTGATGGCTGGAATGAATTTGTTCAAAAATATTCCATTAGTACTGGATACTTGTTGGTATTCAAATATGAAGGAAAGTCGTATTTCACTGTTAATATTTTTAGTTTGCCTACATCTGAGATTAACTATCAATCACCTGCGCAAAGAAGTAATGAAGCGTCTCTCTTTGGAAAACGTCTTACTATTTTCGAAGAAATGGAAGATGAAGATTCTGTTGAAATCATGGACTCGTCGCCTACGAACCTTACTCCTAGCCTATTGCAAAACAAAGCAGTTACCGGCTCAGCTGATAAACTTACTCCTTGCAAGTCTCGTCCGCCTCCAGCACTGCAGAATCTGTTTAATGGATCTAAACTTAATAGCATAAACTGGGGTGAAGGTGGGAATACTCCTTCCAGAAATGCCAACTCGGTAGACAACCAGTTGACCAGAGATATAGGTCTCCAGTTTAATGTAGTTGAGTTTAAAAAGTTTAATGAAGAGTTGAAGTTGCGCGCGGCTACTGATGAAAAGGTTAAGAAAACTGCTGTAAAGAAGAGGAAATCAGATGTCCAGGAACCTCCTTCTGAACATGAAGATGAGGTAGAAATGCGCAATAGGTTTTATGAAAGTGCATCCGCAAGGAAAAGAACTGCAACAGCTGAAGAAAGAGAGAAGGCCATCAATGCAGCAAAATCATTTGAACCATCTAATCCTTTCTGTCGGGTTGTCCTACGACCCTCCTATTTATATAGGGGGTGCATAATGTATCTACCATCTTGCTTTGCAGAGAAGAACTTGAATGGCGTTTCAGGAATTATCAAACTTCAAATCTCTGATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGAGGTGGTAGAGCTAAGTTAAGCCAGGGGTGGTATGAGTTTTCGCTGGAGAACAATTTAGGGGAAGGCGATGTGTGTGTGTTTGAGCTGGTTGCAACGAAGGAAGTAGTGCTGCAGGTTACTGTATTTCGTATTACAGAGGATGAAGGACCGTTGAGCCCACAGCCGTTGCAGCAGAACCAACATGTGAAACTGGTAAACGTTCCGTTTCAGCATCACCTCGCTTCAACTAAACTGATTAGAAATTAA
Protein sequence

>Msa0541940

MPSPSFHKLVLPSTLQAKQLRLPDDFMRKYGGDISPMVTLKVPDGSAWRVGMKKVDNKFWFLDGWNEFVQKYSISTGYLLVFKYEGKSYFTVNIFSLPTSEINYQSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMDSSPTNLTPSLLQNKAVTGSADKLTPCKSRPPPALQNLFNGSKLNSINWGEGGNTPSRNANSVDNQLTRDIGLQFNVVEFKKFNEELKLRAATDEKVKKTAVKKRKSDVQEPPSEHEDEVEMRNRFYESASARKRTATAEEREKAINAAKSFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGIIKLQISDGRQWPVRCLYRGGRAKLSQGWYEFSLENNLGEGDVCVFELVATKEVVLQVTVFRITEDEGPLSPQPLQQNQHVKLVNVPFQHHLASTKLIRN*