Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778670 | A0A072VBX3 | 47.706 | 218 | 56 | 3 | 45 | 204 | 354 | 571 | 7.55e-42 | 163 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737080 | Msa0778670 | 0.885660 | 6.711248e-72 | -8.615850e-47 |
| Msa0778670 | Msa0778680 | 0.824750 | 6.815417e-54 | -8.615850e-47 |
| Msa0778670 | Msa0778690 | 0.815551 | 8.725768e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778670 | MtrunA17_Chr2g0325711 | 47.706 | 218 | 56 | 3 | 45 | 204 | 354 | 571 | 1.45e-45 | 163 |
| Msa0778670 | MtrunA17_Chr2g0325711 | 33.333 | 147 | 92 | 1 | 45 | 185 | 312 | 458 | 3.43e-13 | 69.7 |
| Msa0778670 | MtrunA17_Chr2g0325711 | 33.974 | 156 | 81 | 2 | 45 | 186 | 284 | 431 | 5.59e-13 | 68.9 |
| Msa0778670 | MtrunA17_Chr2g0325811 | 51.323 | 189 | 48 | 2 | 46 | 190 | 385 | 573 | 6.02e-44 | 159 |
| Msa0778670 | MtrunA17_Chr2g0325811 | 60.784 | 51 | 9 | 1 | 8 | 47 | 1 | 51 | 5.45e-12 | 65.9 |
| Msa0778670 | MtrunA17_Chr2g0325811 | 35.849 | 159 | 66 | 4 | 45 | 175 | 314 | 464 | 1.64e-11 | 64.3 |
| Msa0778670 | MtrunA17_Chr2g0325241 | 53.927 | 191 | 46 | 3 | 45 | 202 | 188 | 369 | 1.19e-43 | 153 |
| Msa0778670 | MtrunA17_Chr2g0325241 | 35.246 | 244 | 91 | 9 | 1 | 185 | 1 | 236 | 1.46e-16 | 79.0 |
| Msa0778670 | MtrunA17_Chr2g0325221 | 45.755 | 212 | 57 | 3 | 45 | 198 | 388 | 599 | 2.02e-39 | 145 |
| Msa0778670 | MtrunA17_Chr2g0325221 | 34.286 | 175 | 93 | 3 | 45 | 205 | 318 | 484 | 7.28e-13 | 68.6 |
| Msa0778670 | MtrunA17_Chr2g0325221 | 27.313 | 227 | 150 | 4 | 45 | 259 | 346 | 569 | 6.52e-11 | 62.8 |
| Msa0778670 | MtrunA17_Chr2g0325231 | 48.333 | 180 | 62 | 4 | 45 | 205 | 558 | 725 | 5.92e-32 | 124 |
| Msa0778670 | MtrunA17_Chr2g0325231 | 35.632 | 174 | 81 | 3 | 49 | 191 | 411 | 584 | 1.05e-16 | 80.1 |
| Msa0778670 | MtrunA17_Chr2g0325231 | 34.524 | 168 | 90 | 2 | 44 | 191 | 459 | 626 | 2.27e-16 | 79.0 |
| Msa0778670 | MtrunA17_Chr2g0325231 | 35.211 | 142 | 84 | 1 | 45 | 186 | 281 | 414 | 3.12e-15 | 75.5 |
| Msa0778670 | MtrunA17_Chr2g0325691 | 52.258 | 155 | 68 | 1 | 45 | 193 | 565 | 719 | 1.45e-31 | 123 |
| Msa0778670 | MtrunA17_Chr2g0325691 | 40.260 | 154 | 86 | 1 | 45 | 192 | 311 | 464 | 9.80e-23 | 97.8 |
| Msa0778670 | MtrunA17_Chr2g0325691 | 33.500 | 200 | 111 | 3 | 45 | 227 | 409 | 603 | 1.07e-16 | 80.1 |
| Msa0778670 | MtrunA17_Chr2g0325691 | 36.095 | 169 | 86 | 3 | 45 | 191 | 451 | 619 | 5.92e-13 | 68.9 |
| Msa0778670 | MtrunA17_Chr2g0325751 | 51.748 | 143 | 54 | 2 | 54 | 196 | 7 | 134 | 8.50e-31 | 112 |
| Msa0778670 | MtrunA17_Chr2g0325611 | 48.366 | 153 | 64 | 2 | 45 | 197 | 184 | 321 | 6.33e-30 | 118 |
| Msa0778670 | MtrunA17_Chr2g0325701 | 44.681 | 188 | 79 | 3 | 44 | 206 | 251 | 438 | 6.80e-30 | 118 |
| Msa0778670 | MtrunA17_Chr2g0325861 | 43.094 | 181 | 82 | 4 | 45 | 212 | 510 | 682 | 5.43e-28 | 113 |
| Msa0778670 | MtrunA17_Chr2g0325861 | 33.929 | 168 | 91 | 2 | 45 | 192 | 356 | 523 | 5.43e-12 | 65.9 |
| Msa0778670 | MtrunA17_Chr2g0325211 | 43.575 | 179 | 57 | 3 | 49 | 197 | 2 | 166 | 6.07e-28 | 106 |
| Msa0778670 | MtrunA17_Chr2g0325761 | 36.481 | 233 | 113 | 6 | 47 | 244 | 439 | 671 | 1.72e-26 | 108 |
| Msa0778670 | MtrunA17_Chr2g0325761 | 34.899 | 149 | 89 | 1 | 44 | 192 | 324 | 464 | 1.66e-11 | 64.3 |
| Msa0778670 | MtrunA17_Chr2g0325661 | 43.575 | 179 | 77 | 5 | 48 | 205 | 445 | 620 | 1.86e-26 | 108 |
| Msa0778670 | MtrunA17_Chr2g0325661 | 36.486 | 148 | 86 | 1 | 44 | 191 | 329 | 468 | 1.69e-12 | 67.4 |
| Msa0778670 | MtrunA17_Chr2g0325361 | 42.667 | 150 | 80 | 1 | 45 | 188 | 539 | 688 | 2.80e-25 | 105 |
| Msa0778670 | MtrunA17_Chr2g0325361 | 39.869 | 153 | 86 | 1 | 45 | 191 | 483 | 635 | 7.92e-22 | 95.1 |
| Msa0778670 | MtrunA17_Chr2g0325361 | 37.975 | 158 | 88 | 2 | 45 | 192 | 437 | 594 | 6.31e-18 | 83.6 |
| Msa0778670 | MtrunA17_Chr2g0325361 | 40.152 | 132 | 73 | 1 | 45 | 170 | 581 | 712 | 9.98e-18 | 83.2 |
| Msa0778670 | MtrunA17_Chr2g0325361 | 40.741 | 135 | 74 | 2 | 45 | 173 | 325 | 459 | 1.07e-15 | 77.0 |
| Msa0778670 | MtrunA17_Chr2g0325361 | 29.675 | 246 | 115 | 5 | 45 | 240 | 623 | 860 | 9.22e-14 | 71.2 |
| Msa0778670 | MtrunA17_Chr2g0325361 | 32.143 | 168 | 94 | 2 | 45 | 192 | 269 | 436 | 9.74e-13 | 68.2 |
| Msa0778670 | MtrunA17_Chr2g0325641 | 44.755 | 143 | 64 | 2 | 44 | 186 | 180 | 307 | 6.14e-21 | 90.5 |
| Msa0778670 | MtrunA17_Chr2g0325641 | 40.845 | 142 | 71 | 2 | 45 | 173 | 90 | 231 | 1.14e-13 | 70.1 |
| Msa0778670 | MtrunA17_Chr2g0325641 | 39.860 | 143 | 64 | 3 | 45 | 173 | 6 | 140 | 1.18e-13 | 70.1 |
| Msa0778670 | MtrunA17_Chr2g0325621 | 44.079 | 152 | 63 | 3 | 45 | 196 | 268 | 397 | 5.49e-20 | 89.7 |
| Msa0778670 | MtrunA17_Chr2g0280141 | 39.869 | 153 | 86 | 1 | 45 | 191 | 271 | 423 | 3.35e-19 | 87.4 |
| Msa0778670 | MtrunA17_Chr2g0280141 | 33.171 | 205 | 97 | 5 | 45 | 212 | 369 | 570 | 2.83e-17 | 81.6 |
| Msa0778670 | MtrunA17_Chr2g0280141 | 33.784 | 148 | 90 | 1 | 45 | 192 | 299 | 438 | 1.11e-13 | 70.9 |
| Msa0778670 | MtrunA17_Chr6g0471251 | 35.833 | 240 | 85 | 4 | 45 | 217 | 284 | 521 | 3.64e-19 | 87.4 |
| Msa0778670 | MtrunA17_Chr2g0325281 | 36.464 | 181 | 104 | 3 | 45 | 224 | 441 | 611 | 9.32e-19 | 85.9 |
| Msa0778670 | MtrunA17_Chr2g0325281 | 34.911 | 169 | 90 | 2 | 43 | 191 | 369 | 537 | 3.02e-18 | 84.3 |
| Msa0778670 | MtrunA17_Chr2g0325281 | 39.695 | 131 | 71 | 1 | 44 | 174 | 244 | 366 | 8.20e-16 | 77.0 |
| Msa0778670 | MtrunA17_Chr2g0325281 | 34.783 | 161 | 98 | 2 | 45 | 198 | 273 | 433 | 3.20e-15 | 75.5 |
| Msa0778670 | MtrunA17_Chr2g0325281 | 38.806 | 134 | 76 | 1 | 45 | 172 | 315 | 448 | 1.23e-13 | 70.9 |
| Msa0778670 | MtrunA17_Chr2g0325321 | 34.911 | 169 | 90 | 2 | 43 | 191 | 369 | 537 | 1.40e-18 | 85.5 |
| Msa0778670 | MtrunA17_Chr2g0325321 | 38.798 | 183 | 94 | 3 | 45 | 217 | 441 | 615 | 5.37e-18 | 84.0 |
| Msa0778670 | MtrunA17_Chr2g0325741 | 57.303 | 89 | 28 | 3 | 199 | 278 | 48 | 135 | 8.24e-18 | 81.6 |
| Msa0778670 | MtrunA17_Chr7g0235901 | 39.844 | 128 | 69 | 1 | 45 | 172 | 192 | 311 | 2.35e-17 | 80.5 |
| Msa0778670 | MtrunA17_Chr2g0325651 | 34.641 | 153 | 85 | 2 | 44 | 189 | 226 | 370 | 1.06e-15 | 76.3 |
| Msa0778670 | MtrunA17_Chr2g0325351 | 36.667 | 150 | 78 | 2 | 59 | 191 | 230 | 379 | 1.11e-15 | 77.0 |
| Msa0778670 | MtrunA17_Chr2g0325351 | 41.406 | 128 | 67 | 1 | 44 | 171 | 282 | 401 | 8.37e-15 | 74.3 |
| Msa0778670 | MtrunA17_Chr2g0325351 | 34.524 | 168 | 91 | 3 | 35 | 184 | 220 | 386 | 4.41e-14 | 72.0 |
| Msa0778670 | MtrunA17_Chr5g0434751 | 39.333 | 150 | 57 | 2 | 48 | 163 | 37 | 186 | 9.23e-14 | 70.1 |
| Msa0778670 | MtrunA17_Chr5g0434751 | 33.557 | 149 | 77 | 2 | 54 | 188 | 1 | 141 | 3.47e-11 | 62.4 |
| Msa0778670 | MtrunA17_Chr5g0416271 | 36.620 | 142 | 82 | 1 | 44 | 185 | 191 | 324 | 1.35e-13 | 70.5 |
| Msa0778670 | MtrunA17_Chr5g0416271 | 35.099 | 151 | 76 | 3 | 44 | 194 | 163 | 291 | 2.90e-12 | 66.6 |
| Msa0778670 | MtrunA17_Chr2g0333341 | 52.308 | 65 | 31 | 0 | 45 | 109 | 378 | 442 | 8.30e-12 | 65.1 |
| Msa0778670 | MtrunA17_Chr2g0325781 | 41.880 | 117 | 43 | 5 | 162 | 271 | 2 | 100 | 6.53e-11 | 61.6 |
| Msa0778670 | MtrunA17_Chr2g0325261 | 42.391 | 92 | 47 | 1 | 44 | 129 | 212 | 303 | 9.63e-11 | 61.2 |
| Msa0778670 | MtrunA17_Chr2g0325341 | 42.391 | 92 | 47 | 1 | 44 | 129 | 212 | 303 | 9.63e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTAACATCCTCTTAAC+TGG | 0.232418 | 5_2:-59490359 | None:intergenic |
| TATGGCAGACGCTTTCATTT+TGG | 0.252285 | 5_2:-59490468 | None:intergenic |
| CCATCAAACGGCTTCTCTTT+CGG | 0.275473 | 5_2:-59488453 | None:intergenic |
| TCAAAAGAGAGGCAATTTAA+AGG | 0.289337 | 5_2:+59488088 | Msa0778670:CDS |
| CTGATTTCAAATCTTCCATT+TGG | 0.306760 | 5_2:-59488350 | None:intergenic |
| AAATGATTTATCAGTTTATA+TGG | 0.308629 | 5_2:-59490486 | None:intergenic |
| ATTTGATGAAGAAACAGAAT+TGG | 0.359175 | 5_2:+59488572 | Msa0778670:CDS |
| AATTGTCCATCAAATTCATT+TGG | 0.367535 | 5_2:-59488501 | None:intergenic |
| CCGAAAGAGAAGCCGTTTGA+TGG | 0.393205 | 5_2:+59488453 | Msa0778670:CDS |
| AGCAGTAATAATAACTATAA+TGG | 0.393392 | 5_2:+59490305 | Msa0778670:CDS |
| TCAAAGCCAAATGAATTTGA+TGG | 0.395573 | 5_2:+59488495 | Msa0778670:CDS |
| AGACAAACATTATGAAGAAT+GGG | 0.403930 | 5_2:+59488374 | Msa0778670:CDS |
| AATTCTGTTTCTTCATCAAA+TGG | 0.409073 | 5_2:-59488570 | None:intergenic |
| TCGTCATCATCATAAGAAAC+TGG | 0.422867 | 5_2:-59487699 | None:intergenic |
| CGATGCTCCTTTGTCAGAAA+AGG | 0.423306 | 5_2:+59487719 | Msa0778670:CDS |
| AAGACAAACATTATGAAGAA+TGG | 0.431438 | 5_2:+59488373 | Msa0778670:CDS |
| ATTCAAGGTGTCGCCGTCAC+TGG | 0.434006 | 5_2:+59490415 | Msa0778670:CDS |
| TTTCCGATCAAAAGAAAAGT+TGG | 0.436818 | 5_2:+59488207 | Msa0778670:CDS |
| CTACTACACTCCCAGTTAAG+AGG | 0.436943 | 5_2:+59490348 | Msa0778670:CDS |
| TTTGATGAAGAAACAGAATT+GGG | 0.460504 | 5_2:+59488573 | Msa0778670:CDS |
| TGATAGCCGGGTTAAGGAGT+TGG | 0.467109 | 5_2:+59488063 | Msa0778670:CDS |
| GAAGGAGTTTGAATTAAAAG+AGG | 0.484228 | 5_2:+59488117 | Msa0778670:CDS |
| ACTATAATGGCTCTGTTAAG+AGG | 0.498960 | 5_2:+59490318 | Msa0778670:CDS |
| TCCTTCACACCTCCATCAAA+CGG | 0.506376 | 5_2:-59488465 | None:intergenic |
| GATAACAACAATGTCTTGCA+CGG | 0.525901 | 5_2:+59490380 | Msa0778670:CDS |
| CAATTAACATCCTCTTAACT+GGG | 0.525970 | 5_2:-59490358 | None:intergenic |
| GCTCGAATGCAGAAGCTCAA+TGG | 0.534526 | 5_2:+59488318 | Msa0778670:intron |
| AGAGAGGCAATTTAAAGGAC+GGG | 0.540797 | 5_2:+59488093 | Msa0778670:CDS |
| GCAATTTAAAGGACGGGTGA+AGG | 0.549668 | 5_2:+59488099 | Msa0778670:CDS |
| TATTGTTTCTCTGTTAACTC+AGG | 0.558132 | 5_2:-59488531 | None:intergenic |
| GCCGTTTGATGGAGGTGTGA+AGG | 0.564111 | 5_2:+59488464 | Msa0778670:CDS |
| ATGATGTTCCTTCGTTAGCA+CGG | 0.565351 | 5_2:+59490255 | Msa0778670:CDS |
| AAGAGAGGCAATTTAAAGGA+CGG | 0.581140 | 5_2:+59488092 | Msa0778670:CDS |
| TTGAATCCAACTCCTTAACC+CGG | 0.583548 | 5_2:-59488069 | None:intergenic |
| GCAGAAAAGAAGCAATTCGA+AGG | 0.588903 | 5_2:+59488172 | Msa0778670:CDS |
| TACATGGCATTCAGAAGTGA+GGG | 0.591241 | 5_2:+59487674 | Msa0778670:CDS |
| TATGTTCAAAGTAGATGTGA+AGG | 0.595378 | 5_2:+59488422 | Msa0778670:CDS |
| TTAAAAGAGGAGCAAGTCAA+AGG | 0.599847 | 5_2:+59488130 | Msa0778670:CDS |
| GACAAACATTATGAAGAATG+GGG | 0.606927 | 5_2:+59488375 | Msa0778670:CDS |
| AAAGAGAAGCCGTTTGATGG+AGG | 0.619411 | 5_2:+59488456 | Msa0778670:CDS |
| ATAATGGCTCTGTTAAGAGG+AGG | 0.619469 | 5_2:+59490321 | Msa0778670:CDS |
| GTACATGGCATTCAGAAGTG+AGG | 0.621261 | 5_2:+59487673 | Msa0778670:CDS |
| AGGAGTTGGATTCAAAAGAG+AGG | 0.632615 | 5_2:+59488077 | Msa0778670:CDS |
| TAATGGCTCTGTTAAGAGGA+GGG | 0.634361 | 5_2:+59490322 | Msa0778670:CDS |
| CAGAAAAGAAGCAATTCGAA+GGG | 0.645647 | 5_2:+59488173 | Msa0778670:CDS |
| TGAGGAAACCGTGCTAACGA+AGG | 0.666192 | 5_2:-59490263 | None:intergenic |
| ACAAACATTATGAAGAATGG+GGG | 0.666481 | 5_2:+59488376 | Msa0778670:CDS |
| TCATCGTCATCATCCAGTGA+CGG | 0.672577 | 5_2:-59490428 | None:intergenic |
| GTGTTGGTGAGAAAAGTACA+TGG | 0.727268 | 5_2:+59487658 | Msa0778670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAATATAATTGATTTTAA+AGG | + | chr5_2:59487612-59487631 | Msa0778670:CDS | 10.0% |
| !!! | AATACTGTTTTTAAAAAATT+AGG | - | chr5_2:59488688-59488707 | None:intergenic | 10.0% |
| !! | ATAACATATATGTATATATT+TGG | - | chr5_2:59489440-59489459 | None:intergenic | 10.0% |
| !! | AAATAAGTTTAATTAACAAA+AGG | - | chr5_2:59489635-59489654 | None:intergenic | 10.0% |
| !!! | TATTTTTAAGAAGAATATCT+CGG | - | chr5_2:59487783-59487802 | None:intergenic | 15.0% |
| !! | GAATAAGTTTAAATTAAAGT+TGG | + | chr5_2:59487991-59488010 | Msa0778670:intron | 15.0% |
| !! | TCAAAAAAACAAAATGAAAA+AGG | - | chr5_2:59488606-59488625 | None:intergenic | 15.0% |
| !! | ATATGTTATGATTAAGATAT+TGG | + | chr5_2:59489451-59489470 | Msa0778670:intron | 15.0% |
| !!! | TATTTCTTCTATTTTTCAAA+TGG | + | chr5_2:59489571-59489590 | Msa0778670:intron | 15.0% |
| !!! | ATTGAAAATAGTATTTTTAC+TGG | + | chr5_2:59490115-59490134 | Msa0778670:intron | 15.0% |
| !! | GAGATATTCTTCTTAAAAAT+AGG | + | chr5_2:59487782-59487801 | Msa0778670:intron | 20.0% |
| !! | TCTTTATCTTGATTATCATA+TGG | - | chr5_2:59487890-59487909 | None:intergenic | 20.0% |
| !!! | ATTTCAACTGTTTCTTTTTA+TGG | + | chr5_2:59488635-59488654 | Msa0778670:intron | 20.0% |
| !! | AATCTCATTAAACATTCATA+AGG | + | chr5_2:59488915-59488934 | Msa0778670:intron | 20.0% |
| !!! | GTGGTTTATTTTAAATATTG+TGG | + | chr5_2:59489126-59489145 | Msa0778670:intron | 20.0% |
| !! | TTAAGTTAATGAAAACTCTT+CGG | + | chr5_2:59489213-59489232 | Msa0778670:intron | 20.0% |
| !!! | AACTTATTTTATAGTTGTTC+TGG | + | chr5_2:59489646-59489665 | Msa0778670:intron | 20.0% |
| !! | TGCTCTTAAACATTAAATTT+AGG | - | chr5_2:59489828-59489847 | None:intergenic | 20.0% |
| !!! | TTTCCTCAATTTTTGAATTT+GGG | + | chr5_2:59490278-59490297 | Msa0778670:CDS | 20.0% |
| !! | AGCAGTAATAATAACTATAA+TGG | + | chr5_2:59490305-59490324 | Msa0778670:CDS | 20.0% |
| !! | CGGTTTAATTAAAAAATTCA+AGG | + | chr5_2:59490400-59490419 | Msa0778670:CDS | 20.0% |
| ! | TTGATTCAAATTCCTTTATC+CGG | - | chr5_2:59488282-59488301 | None:intergenic | 25.0% |
| ! | AAAGGAATTTGAATCAAAAG+AGG | + | chr5_2:59488285-59488304 | Msa0778670:intron | 25.0% |
| ! | AAGACAAACATTATGAAGAA+TGG | + | chr5_2:59488373-59488392 | Msa0778670:CDS | 25.0% |
| ! | AGACAAACATTATGAAGAAT+GGG | + | chr5_2:59488374-59488393 | Msa0778670:CDS | 25.0% |
| ! | AATTGTCCATCAAATTCATT+TGG | - | chr5_2:59488504-59488523 | None:intergenic | 25.0% |
| !! | AATTCTGTTTCTTCATCAAA+TGG | - | chr5_2:59488573-59488592 | None:intergenic | 25.0% |
| ! | ATTTGATGAAGAAACAGAAT+TGG | + | chr5_2:59488572-59488591 | Msa0778670:CDS | 25.0% |
| ! | TTTGATGAAGAAACAGAATT+GGG | + | chr5_2:59488573-59488592 | Msa0778670:CDS | 25.0% |
| !!! | AATCAAATATCTCACTTTTG+TGG | - | chr5_2:59488821-59488840 | None:intergenic | 25.0% |
| ! | TCTGATCGTTATTACTAATT+TGG | + | chr5_2:59489028-59489047 | Msa0778670:intron | 25.0% |
| !!! | TTTGTTTTTTGTTTTAGCCA+TGG | + | chr5_2:59489099-59489118 | Msa0778670:intron | 25.0% |
| !! | TTAAGATATTGGTTGTAAGT+AGG | + | chr5_2:59489462-59489481 | Msa0778670:intron | 25.0% |
| !! | TATTTAGAACTATCGCAAAA+TGG | - | chr5_2:59489933-59489952 | None:intergenic | 25.0% |
| !! | GTTTCCTCAATTTTTGAATT+TGG | + | chr5_2:59490277-59490296 | Msa0778670:CDS | 25.0% |
| ! | TCTGATAACTCAAAGTTTTG+TGG | + | chr5_2:59487636-59487655 | Msa0778670:CDS | 30.0% |
| GTTACTAAATTTGACATCCA+CGG | - | chr5_2:59487748-59487767 | None:intergenic | 30.0% | |
| GGATGTCAAATTTAGTAACA+TGG | + | chr5_2:59487749-59487768 | Msa0778670:intron | 30.0% | |
| CAATGTCATTGCTAGTTAAA+AGG | + | chr5_2:59487815-59487834 | Msa0778670:intron | 30.0% | |
| !! | TTTCTTAACAGAAGTGTTCA+AGG | - | chr5_2:59487855-59487874 | None:intergenic | 30.0% |
| CACTTCTGTTAAGAAATCAA+AGG | + | chr5_2:59487859-59487878 | Msa0778670:intron | 30.0% | |
| AAGATGATATTCCTTTGAGT+CGG | + | chr5_2:59487906-59487925 | Msa0778670:intron | 30.0% | |
| GAAATTTAATTGCCAAACGA+TGG | + | chr5_2:59488015-59488034 | Msa0778670:intron | 30.0% | |
| !!! | AAAAGAAGCATTTTGATAGC+CGG | + | chr5_2:59488050-59488069 | Msa0778670:intron | 30.0% |
| TCAAAAGAGAGGCAATTTAA+AGG | + | chr5_2:59488088-59488107 | Msa0778670:CDS | 30.0% | |
| GAAGGAGTTTGAATTAAAAG+AGG | + | chr5_2:59488117-59488136 | Msa0778670:CDS | 30.0% | |
| TTTCCGATCAAAAGAAAAGT+TGG | + | chr5_2:59488207-59488226 | Msa0778670:CDS | 30.0% | |
| ! | CAACCAACTTTTCTTTTGAT+CGG | - | chr5_2:59488213-59488232 | None:intergenic | 30.0% |
| GAATTTGAATCAAAAGAGGA+GGG | + | chr5_2:59488289-59488308 | Msa0778670:intron | 30.0% | |
| CTGATTTCAAATCTTCCATT+TGG | - | chr5_2:59488353-59488372 | None:intergenic | 30.0% | |
| GACAAACATTATGAAGAATG+GGG | + | chr5_2:59488375-59488394 | Msa0778670:CDS | 30.0% | |
| ACAAACATTATGAAGAATGG+GGG | + | chr5_2:59488376-59488395 | Msa0778670:CDS | 30.0% | |
| TATGTTCAAAGTAGATGTGA+AGG | + | chr5_2:59488422-59488441 | Msa0778670:CDS | 30.0% | |
| TCAAAGCCAAATGAATTTGA+TGG | + | chr5_2:59488495-59488514 | Msa0778670:CDS | 30.0% | |
| ! | TATTGTTTCTCTGTTAACTC+AGG | - | chr5_2:59488534-59488553 | None:intergenic | 30.0% |
| AACACCAAAAAACAAAAGAC+AGG | + | chr5_2:59488941-59488960 | Msa0778670:intron | 30.0% | |
| !!! | TGTTCCTGTCTTTTGTTTTT+TGG | - | chr5_2:59488948-59488967 | None:intergenic | 30.0% |
| TAAAATAAACCACTTAGCCA+TGG | - | chr5_2:59489119-59489138 | None:intergenic | 30.0% | |
| ! | GATGATGTCTTAAAGCTTTT+CGG | + | chr5_2:59489295-59489314 | Msa0778670:intron | 30.0% |
| ! | TATTTTATCTGCAAAACCCA+AGG | - | chr5_2:59489362-59489381 | None:intergenic | 30.0% |
| ! | GGGTTTTGCAGATAAAATAT+CGG | + | chr5_2:59489363-59489382 | Msa0778670:intron | 30.0% |
| ! | GGTTTTGCAGATAAAATATC+GGG | + | chr5_2:59489364-59489383 | Msa0778670:intron | 30.0% |
| !!! | TACCTTGTTTTTCTCTCATT+AGG | + | chr5_2:59489403-59489422 | Msa0778670:intron | 30.0% |
| AACCTAATGAGAGAAAAACA+AGG | - | chr5_2:59489408-59489427 | None:intergenic | 30.0% | |
| ! | TGTAATTAGCTTCATGAACT+TGG | + | chr5_2:59489499-59489518 | Msa0778670:intron | 30.0% |
| ATTTCTTTCAAGAACATGTG+AGG | + | chr5_2:59489800-59489819 | Msa0778670:intron | 30.0% | |
| AATACTTTGAACTTGAACAC+AGG | + | chr5_2:59489949-59489968 | Msa0778670:intron | 30.0% | |
| ! | TTAAGAGTGATTGTTAGTCT+TGG | + | chr5_2:59489997-59490016 | Msa0778670:intron | 30.0% |
| CTACTACTTAACAAGATTCA+CGG | + | chr5_2:59490066-59490085 | Msa0778670:intron | 30.0% | |
| GTTCCCAAATTCAAAAATTG+AGG | - | chr5_2:59490284-59490303 | None:intergenic | 30.0% | |
| CAATTAACATCCTCTTAACT+GGG | - | chr5_2:59490361-59490380 | None:intergenic | 30.0% | |
| TCAATTAACATCCTCTTAAC+TGG | - | chr5_2:59490362-59490381 | None:intergenic | 30.0% | |
| !! | AACTCAAAGTTTTGTGGTGT+TGG | + | chr5_2:59487642-59487661 | Msa0778670:CDS | 35.0% |
| TCGTCATCATCATAAGAAAC+TGG | - | chr5_2:59487702-59487721 | None:intergenic | 35.0% | |
| TGTTCAAGGAACTAATCGAA+TGG | - | chr5_2:59487841-59487860 | None:intergenic | 35.0% | |
| ATATTCCTTTGAGTCGGTTA+GGG | + | chr5_2:59487912-59487931 | Msa0778670:intron | 35.0% | |
| ! | AAGATTCAAGTTCCATCGTT+TGG | - | chr5_2:59488030-59488049 | None:intergenic | 35.0% |
| !!! | AAAGAAGCATTTTGATAGCC+GGG | + | chr5_2:59488051-59488070 | Msa0778670:intron | 35.0% |
| AAGAGAGGCAATTTAAAGGA+CGG | + | chr5_2:59488092-59488111 | Msa0778670:CDS | 35.0% | |
| TTAAAAGAGGAGCAAGTCAA+AGG | + | chr5_2:59488130-59488149 | Msa0778670:CDS | 35.0% | |
| CAGAAAAGAAGCAATTCGAA+GGG | + | chr5_2:59488173-59488192 | Msa0778670:CDS | 35.0% | |
| TTGATTGAAACTCCTTCACT+TGG | - | chr5_2:59488240-59488259 | None:intergenic | 35.0% | |
| GAAGGAGTTTCAATCAACAA+AGG | + | chr5_2:59488243-59488262 | Msa0778670:intron | 35.0% | |
| GGAATTTGAATCAAAAGAGG+AGG | + | chr5_2:59488288-59488307 | Msa0778670:intron | 35.0% | |
| !!! | CAATGGTTTTGTAAGCCAAA+TGG | + | chr5_2:59488335-59488354 | Msa0778670:CDS | 35.0% |
| !! | AACTGTTTCTTTTTATGGCG+TGG | + | chr5_2:59488640-59488659 | Msa0778670:intron | 35.0% |
| GTTATCATAGTAGTCCATCT+CGG | + | chr5_2:59488774-59488793 | Msa0778670:intron | 35.0% | |
| ! | TTCGCCTTCTTGAACATTTT+TGG | + | chr5_2:59489060-59489079 | Msa0778670:intron | 35.0% |
| GCATCCAAAAATGTTCAAGA+AGG | - | chr5_2:59489067-59489086 | None:intergenic | 35.0% | |
| AGTTAATGAAAACTCTTCGG+TGG | + | chr5_2:59489216-59489235 | Msa0778670:intron | 35.0% | |
| CTACTCCTTCTGTCAATTTA+TGG | + | chr5_2:59489250-59489269 | Msa0778670:intron | 35.0% | |
| CCAATCCATAAATTGACAGA+AGG | - | chr5_2:59489258-59489277 | None:intergenic | 35.0% | |
| CCTTCTGTCAATTTATGGAT+TGG | + | chr5_2:59489255-59489274 | Msa0778670:intron | 35.0% | |
| TAACAAAAGGCTTAGCAGAT+TGG | - | chr5_2:59489622-59489641 | None:intergenic | 35.0% | |
| ! | ATAGTTGTTCTGGTCAGTTT+TGG | + | chr5_2:59489656-59489675 | Msa0778670:intron | 35.0% |
| AATGTTTAAGAGCAGTTGCA+AGG | + | chr5_2:59489834-59489853 | Msa0778670:intron | 35.0% | |
| TAAAACAACCATGATTCGTG+TGG | - | chr5_2:59489869-59489888 | None:intergenic | 35.0% | |
| ATCGCAAAATGGTATGAAGA+TGG | - | chr5_2:59489922-59489941 | None:intergenic | 35.0% | |
| GGATAATGTCAGTGATAAAG+CGG | + | chr5_2:59489970-59489989 | Msa0778670:intron | 35.0% | |
| CTTGTTAAGTAGTAGTTCCT+TGG | - | chr5_2:59490061-59490080 | None:intergenic | 35.0% | |
| ! | TTAGGTTGTTGTGTATTTGG+AGG | - | chr5_2:59490157-59490176 | None:intergenic | 35.0% |
| ! | AGGTTAGGTTGTTGTGTATT+TGG | - | chr5_2:59490160-59490179 | None:intergenic | 35.0% |
| TACACAACAACCTAACCTAT+AGG | + | chr5_2:59490162-59490181 | Msa0778670:intron | 35.0% | |
| ! | ACTATAATGGCTCTGTTAAG+AGG | + | chr5_2:59490318-59490337 | Msa0778670:CDS | 35.0% |
| GATAACAACAATGTCTTGCA+CGG | + | chr5_2:59490380-59490399 | Msa0778670:CDS | 35.0% | |
| !! | GCTTTCATTTTGGAGGAAAT+AGG | - | chr5_2:59490461-59490480 | None:intergenic | 35.0% |
| ! | GTGTTGGTGAGAAAAGTACA+TGG | + | chr5_2:59487658-59487677 | Msa0778670:CDS | 40.0% |
| TACATGGCATTCAGAAGTGA+GGG | + | chr5_2:59487674-59487693 | Msa0778670:CDS | 40.0% | |
| ! | ACGGTAACCTTTTCTGACAA+AGG | - | chr5_2:59487729-59487748 | None:intergenic | 40.0% |
| TTTGTCAGAAAAGGTTACCG+TGG | + | chr5_2:59487728-59487747 | Msa0778670:intron | 40.0% | |
| GATATTCCTTTGAGTCGGTT+AGG | + | chr5_2:59487911-59487930 | Msa0778670:intron | 40.0% | |
| TTGAATCCAACTCCTTAACC+CGG | - | chr5_2:59488072-59488091 | None:intergenic | 40.0% | |
| AGGAGTTGGATTCAAAAGAG+AGG | + | chr5_2:59488077-59488096 | Msa0778670:CDS | 40.0% | |
| AGAGAGGCAATTTAAAGGAC+GGG | + | chr5_2:59488093-59488112 | Msa0778670:CDS | 40.0% | |
| GCAGAAAAGAAGCAATTCGA+AGG | + | chr5_2:59488172-59488191 | Msa0778670:CDS | 40.0% | |
| GGAGTTTCAATCAACAAAGG+AGG | + | chr5_2:59488246-59488265 | Msa0778670:intron | 40.0% | |
| TCAACAAAGGAGGAGTTTGA+AGG | + | chr5_2:59488256-59488275 | Msa0778670:intron | 40.0% | |
| !!! | TTGTTTTAGCCATGGCTAAG+TGG | + | chr5_2:59489107-59489126 | Msa0778670:intron | 40.0% |
| ACATCATCTTCGTCGAAAGA+AGG | - | chr5_2:59489283-59489302 | None:intergenic | 40.0% | |
| AACATAGTTGTAGAGCTGCT+TGG | + | chr5_2:59489334-59489353 | Msa0778670:intron | 40.0% | |
| ACATAGTTGTAGAGCTGCTT+GGG | + | chr5_2:59489335-59489354 | Msa0778670:intron | 40.0% | |
| GATTCTCTACAAAATCTGCG+AGG | - | chr5_2:59489702-59489721 | None:intergenic | 40.0% | |
| CGATAACAACCTAGAATCCA+AGG | + | chr5_2:59490041-59490060 | Msa0778670:intron | 40.0% | |
| GTAGTAGTTCCTTGGATTCT+AGG | - | chr5_2:59490053-59490072 | None:intergenic | 40.0% | |
| CTACTTAACAAGATTCACGG+TGG | + | chr5_2:59490069-59490088 | Msa0778670:intron | 40.0% | |
| CAACCTAACCTATAGGTATG+TGG | + | chr5_2:59490169-59490188 | Msa0778670:intron | 40.0% | |
| ATGATGTTCCTTCGTTAGCA+CGG | + | chr5_2:59490255-59490274 | Msa0778670:CDS | 40.0% | |
| ! | ATAATGGCTCTGTTAAGAGG+AGG | + | chr5_2:59490321-59490340 | Msa0778670:CDS | 40.0% |
| ! | TAATGGCTCTGTTAAGAGGA+GGG | + | chr5_2:59490322-59490341 | Msa0778670:CDS | 40.0% |
| ! | TATGGCAGACGCTTTCATTT+TGG | - | chr5_2:59490471-59490490 | None:intergenic | 40.0% |
| GTACATGGCATTCAGAAGTG+AGG | + | chr5_2:59487673-59487692 | Msa0778670:CDS | 45.0% | |
| CGATGCTCCTTTGTCAGAAA+AGG | + | chr5_2:59487719-59487738 | Msa0778670:CDS | 45.0% | |
| CAGAACGAGAATCAGCTCAA+AGG | + | chr5_2:59487962-59487981 | Msa0778670:intron | 45.0% | |
| !! | GCATTTTGATAGCCGGGTTA+AGG | + | chr5_2:59488057-59488076 | Msa0778670:CDS | 45.0% |
| GCAATTTAAAGGACGGGTGA+AGG | + | chr5_2:59488099-59488118 | Msa0778670:CDS | 45.0% | |
| GTTGGTTGAAGTCCAAGTGA+AGG | + | chr5_2:59488225-59488244 | Msa0778670:intron | 45.0% | |
| CCATCAAACGGCTTCTCTTT+CGG | - | chr5_2:59488456-59488475 | None:intergenic | 45.0% | |
| AAAGAGAAGCCGTTTGATGG+AGG | + | chr5_2:59488456-59488475 | Msa0778670:CDS | 45.0% | |
| TCCTTCACACCTCCATCAAA+CGG | - | chr5_2:59488468-59488487 | None:intergenic | 45.0% | |
| TAGTAGTCCATCTCGGATAG+CGG | + | chr5_2:59488781-59488800 | Msa0778670:intron | 45.0% | |
| ! | GAAACCATAAGCGCTGCTAT+CGG | + | chr5_2:59488991-59489010 | Msa0778670:intron | 45.0% |
| ACGATCAGAGTAGCCAATAG+CGG | - | chr5_2:59489017-59489036 | None:intergenic | 45.0% | |
| GAAAACTCTTCGGTGGTTCA+TGG | + | chr5_2:59489223-59489242 | Msa0778670:intron | 45.0% | |
| GCAGCTCTACAACTATGTTG+TGG | - | chr5_2:59489333-59489352 | None:intergenic | 45.0% | |
| CATAGTTGTAGAGCTGCTTG+GGG | + | chr5_2:59489336-59489355 | Msa0778670:intron | 45.0% | |
| AACCAACTCCACACGAATCA+TGG | + | chr5_2:59489858-59489877 | Msa0778670:intron | 45.0% | |
| AACCATGATTCGTGTGGAGT+TGG | - | chr5_2:59489863-59489882 | None:intergenic | 45.0% | |
| GGTTGTTATCGCCAATATGC+TGG | - | chr5_2:59490032-59490051 | None:intergenic | 45.0% | |
| CTGCCACATACCTATAGGTT+AGG | - | chr5_2:59490175-59490194 | None:intergenic | 45.0% | |
| CTACTACACTCCCAGTTAAG+AGG | + | chr5_2:59490348-59490367 | Msa0778670:CDS | 45.0% | |
| TCATCGTCATCATCCAGTGA+CGG | - | chr5_2:59490431-59490450 | None:intergenic | 45.0% | |
| !! | ACTTATTATATTAAATATAA+TGG | + | chr5_2:59488889-59488908 | Msa0778670:intron | 5.0% |
| ! | AAGCTCCCTAACCGACTCAA+AGG | - | chr5_2:59487920-59487939 | None:intergenic | 50.0% |
| TGATAGCCGGGTTAAGGAGT+TGG | + | chr5_2:59488063-59488082 | Msa0778670:CDS | 50.0% | |
| CAAAGGAGGAGTTTGAAGGC+CGG | + | chr5_2:59488260-59488279 | Msa0778670:intron | 50.0% | |
| GGAGTTTGAAGGCCGGATAA+AGG | + | chr5_2:59488267-59488286 | Msa0778670:intron | 50.0% | |
| GCTCGAATGCAGAAGCTCAA+TGG | + | chr5_2:59488318-59488337 | Msa0778670:intron | 50.0% | |
| TGAAGAATGGGGGAAAGAGC+TGG | + | chr5_2:59488386-59488405 | Msa0778670:CDS | 50.0% | |
| CCGAAAGAGAAGCCGTTTGA+TGG | + | chr5_2:59488453-59488472 | Msa0778670:CDS | 50.0% | |
| GGAGCTGTTGTCCAGCATAT+TGG | + | chr5_2:59490018-59490037 | Msa0778670:intron | 50.0% | |
| GCATGCTGCCACATACCTAT+AGG | - | chr5_2:59490180-59490199 | None:intergenic | 50.0% | |
| TGAGGAAACCGTGCTAACGA+AGG | - | chr5_2:59490266-59490285 | None:intergenic | 50.0% | |
| ! | GGCAGACGCTTTCATTTTGG+AGG | - | chr5_2:59490468-59490487 | None:intergenic | 50.0% |
| ! | GCCGTTTGATGGAGGTGTGA+AGG | + | chr5_2:59488464-59488483 | Msa0778670:CDS | 55.0% |
| !! | ATTCAAGGTGTCGCCGTCAC+TGG | + | chr5_2:59490415-59490434 | Msa0778670:CDS | 55.0% |
| CTACGCACCGCTATCCGAGA+TGG | - | chr5_2:59488791-59488810 | None:intergenic | 60.0% | |
| ! | TCTCGGATAGCGGTGCGTAG+CGG | + | chr5_2:59488791-59488810 | Msa0778670:intron | 60.0% |
| TGTAGAGCTGCTTGGGGCCT+TGG | + | chr5_2:59489342-59489361 | Msa0778670:intron | 60.0% | |
| GTAGAGCTGCTTGGGGCCTT+GGG | + | chr5_2:59489343-59489362 | Msa0778670:intron | 60.0% | |
| GCGGCCGATAGCAGCGCTTA+TGG | - | chr5_2:59488998-59489017 | None:intergenic | 65.0% | |
| GCGCTGCTATCGGCCGCTAT+TGG | + | chr5_2:59489001-59489020 | Msa0778670:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 59487600 | 59490493 | 59487600 | ID=Msa0778670;Name=Msa0778670 |
| chr5_2 | mRNA | 59487600 | 59490493 | 59487600 | ID=Msa0778670-mRNA-1;Parent=Msa0778670;Name=Msa0778670-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|4|0|278 |
| chr5_2 | exon | 59487600 | 59487740 | 59487600 | ID=Msa0778670-mRNA-1:exon:17478;Parent=Msa0778670-mRNA-1 |
| chr5_2 | exon | 59488055 | 59488240 | 59488055 | ID=Msa0778670-mRNA-1:exon:17479;Parent=Msa0778670-mRNA-1 |
| chr5_2 | exon | 59488330 | 59488594 | 59488330 | ID=Msa0778670-mRNA-1:exon:17480;Parent=Msa0778670-mRNA-1 |
| chr5_2 | exon | 59490249 | 59490493 | 59490249 | ID=Msa0778670-mRNA-1:exon:17481;Parent=Msa0778670-mRNA-1 |
| chr5_2 | CDS | 59487600 | 59487740 | 59487600 | ID=Msa0778670-mRNA-1:cds;Parent=Msa0778670-mRNA-1 |
| chr5_2 | CDS | 59488055 | 59488240 | 59488055 | ID=Msa0778670-mRNA-1:cds;Parent=Msa0778670-mRNA-1 |
| chr5_2 | CDS | 59488330 | 59488594 | 59488330 | ID=Msa0778670-mRNA-1:cds;Parent=Msa0778670-mRNA-1 |
| chr5_2 | CDS | 59490249 | 59490493 | 59490249 | ID=Msa0778670-mRNA-1:cds;Parent=Msa0778670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
