AlfalfaGEDB | Msa0787240

M. sativa cultivar zhongmu-4 / Msa0787240

KEGG: -
GO: -
PFAM: PF01535.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787240	sp\|Q9LFC5\|PP360_ARATH	50.733	546	261	4	630	1170	114	656	0.0	567

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787240	G7KCZ3	92.964	668	18	1	1	639	1	668	0.0	1257

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0025740	Msa0787240	0.813846	2.081214e-51	-8.615850e-47
Msa0027600	Msa0787240	0.812187	4.808955e-51	-8.615850e-47
Msa0068680	Msa0787240	0.801060	1.075971e-48	-8.615850e-47
Msa0183050	Msa0787240	0.801238	9.893476e-49	-8.615850e-47
Msa0756540	Msa0787240	0.800848	1.188938e-48	-8.615850e-47
Msa0787240	Msa0861920	0.859874	3.057136e-63	-8.615850e-47
Msa0787240	Msa0933230	0.806951	6.409428e-50	-8.615850e-47
Msa0787240	Msa1331910	0.803239	3.833340e-49	-8.615850e-47
Msa0787240	Msa1460050	0.800401	1.466253e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787240	MtrunA17_Chr5g0442241	92.964	668	18	1	1	639	1	668	0.0	1257
Msa0787240	MtrunA17_Chr7g0233411	77.578	223	50	0	148	370	2	224	1.07e-107	338
Msa0787240	MtrunA17_Chr5g0441971	83.957	187	27	1	850	1033	1	187	3.46e-105	328
Msa0787240	MtrunA17_Chr5g0441971	32.075	159	108	0	1012	1170	26	184	7.81e-24	100
Msa0787240	MtrunA17_Chr5g0441971	30.519	154	107	0	777	930	33	186	1.32e-21	94.0
Msa0787240	MtrunA17_Chr5g0441971	30.055	183	128	0	784	966	5	187	1.15e-19	88.2
Msa0787240	MtrunA17_Chr5g0441971	29.412	187	129	1	955	1138	1	187	1.77e-19	87.8
Msa0787240	MtrunA17_Chr5g0441971	37.607	117	67	3	1057	1170	1	114	2.97e-16	78.2
Msa0787240	MtrunA17_Chr5g0441971	25.137	183	137	0	714	896	5	187	5.76e-16	77.4
Msa0787240	MtrunA17_Chr5g0441971	28.966	145	103	0	1026	1170	5	149	1.03e-15	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787240	AT5G01110.2	50.733	546	261	4	630	1170	142	684	0.0	568
Msa0787240	AT5G01110.1	50.733	546	261	4	630	1170	114	656	0.0	567
Msa0787240	AT1G05670.1	31.111	540	361	4	636	1167	126	662	1.40e-89	306
Msa0787240	AT1G05670.1	28.913	460	324	1	683	1139	245	704	5.09e-69	247
Msa0787240	AT1G05670.1	33.214	280	179	3	897	1170	178	455	3.94e-39	157
Msa0787240	AT1G05670.1	28.896	308	219	0	685	992	422	729	3.16e-38	154
Msa0787240	AT1G05670.1	25.137	183	137	0	681	863	523	705	8.44e-11	67.0
Msa0787240	AT1G05670.2	31.111	540	361	4	636	1167	126	662	1.40e-89	306
Msa0787240	AT1G05670.2	28.913	460	324	1	683	1139	245	704	5.09e-69	247
Msa0787240	AT1G05670.2	33.214	280	179	3	897	1170	178	455	3.94e-39	157

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Find 250 sgRNAs with CRISPR-Local

Find 567 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTAACGAAAAGTTGA+AGG	0.536384	5_2:-72873720	Msa0787240:CDS
AAAAGGGCTTCAAGACCAAG+AGG	0.678757	5_2:+72870750	None:intergenic
AAAGAAGGGCTGATTCTAAG+AGG	0.549300	5_2:-72873988	Msa0787240:CDS
AAAGCACAAAGCCATTGAGA+TGG	0.613517	5_2:-72873690	Msa0787240:CDS
AACGGTGGATACGGAGTTCA+AGG	0.472009	5_2:-72870882	Msa0787240:CDS
AAGAAAAGCCGAATTAGAAA+TGG	0.446817	5_2:-72873744	Msa0787240:CDS
AAGACAAGGAGCAGTAACAT+CGG	0.690748	5_2:+72872335	None:intergenic
AAGCGGCGTTTCGCATGTCG+AGG	0.628255	5_2:-72868872	Msa0787240:CDS
AAGGAGCAGTAACATCGGAT+AGG	0.611277	5_2:+72872340	None:intergenic
AAGGAGGACAAAGAGTGTAT+TGG	0.526840	5_2:+72870773	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAACTGAAAAAGACAAAGA+CGG	-	chr5_2:72867253-72867272	Msa0787240:CDS	30.0%
GCGAATCAAATCAAATCAAA+TGG	+	chr5_2:72867419-72867438	None:intergenic	30.0%
ATGTGCATTTAGATTGAACA+AGG	+	chr5_2:72867778-72867797	None:intergenic	30.0%
CAATGAAATGCATTGTAATG+CGG	-	chr5_2:72868125-72868144	Msa0787240:CDS	30.0%
GATTGGAAGAATTTAATGCT+GGG	-	chr5_2:72868202-72868221	Msa0787240:CDS	30.0%
ATTGGAAGAATTTAATGCTG+GGG	-	chr5_2:72868203-72868222	Msa0787240:CDS	30.0%
TTTGGAGAGTGAAAAAAGAA+GGG	-	chr5_2:72868383-72868402	Msa0787240:CDS	30.0%
ACTGGAACAAGAAAAGAATA+AGG	-	chr5_2:72868446-72868465	Msa0787240:CDS	30.0%
CTGGAACAAGAAAAGAATAA+GGG	-	chr5_2:72868447-72868466	Msa0787240:CDS	30.0%
GCAAATTGCAAAACTTAAAG+TGG	-	chr5_2:72868473-72868492	Msa0787240:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	72867127	72875280	72867127	ID=Msa0787240;Name=Msa0787240
chr5_2	mRNA	72867127	72875280	72867127	ID=Msa0787240-mRNA-1;Parent=Msa0787240;Name=Msa0787240-mRNA-1;_AED=0.22;_eAED=0.22;_QI=174\|0.57\|0.5\|1\|1\|1\|8\|0\|1173
chr5_2	exon	72867127	72867620	72867127	ID=Msa0787240-mRNA-1:exon:22194;Parent=Msa0787240-mRNA-1
chr5_2	exon	72867840	72868949	72867840	ID=Msa0787240-mRNA-1:exon:22193;Parent=Msa0787240-mRNA-1
chr5_2	exon	72870640	72870917	72870640	ID=Msa0787240-mRNA-1:exon:22192;Parent=Msa0787240-mRNA-1
chr5_2	exon	72871489	72871601	72871489	ID=Msa0787240-mRNA-1:exon:22191;Parent=Msa0787240-mRNA-1
chr5_2	exon	72871978	72872439	72871978	ID=Msa0787240-mRNA-1:exon:22190;Parent=Msa0787240-mRNA-1
chr5_2	exon	72873268	72874235	72873268	ID=Msa0787240-mRNA-1:exon:22189;Parent=Msa0787240-mRNA-1
chr5_2	exon	72874933	72874966	72874933	ID=Msa0787240-mRNA-1:exon:22188;Parent=Msa0787240-mRNA-1
chr5_2	exon	72875044	72875280	72875044	ID=Msa0787240-mRNA-1:exon:22187;Parent=Msa0787240-mRNA-1
chr5_2	five_prime_UTR	72875107	72875280	72875107	ID=Msa0787240-mRNA-1:five_prime_utr;Parent=Msa0787240-mRNA-1
chr5_2	CDS	72875044	72875106	72875044	ID=Msa0787240-mRNA-1:cds;Parent=Msa0787240-mRNA-1
chr5_2	CDS	72874933	72874966	72874933	ID=Msa0787240-mRNA-1:cds;Parent=Msa0787240-mRNA-1
chr5_2	CDS	72873268	72874235	72873268	ID=Msa0787240-mRNA-1:cds;Parent=Msa0787240-mRNA-1
chr5_2	CDS	72871978	72872439	72871978	ID=Msa0787240-mRNA-1:cds;Parent=Msa0787240-mRNA-1
chr5_2	CDS	72871489	72871601	72871489	ID=Msa0787240-mRNA-1:cds;Parent=Msa0787240-mRNA-1
chr5_2	CDS	72870640	72870917	72870640	ID=Msa0787240-mRNA-1:cds;Parent=Msa0787240-mRNA-1
chr5_2	CDS	72867840	72868949	72867840	ID=Msa0787240-mRNA-1:cds;Parent=Msa0787240-mRNA-1
chr5_2	CDS	72867127	72867620	72867127	ID=Msa0787240-mRNA-1:cds;Parent=Msa0787240-mRNA-1

Gene Sequence

>Msa0787240

ATGGCAGTGGCAGCGGCGGAGACACTGAAATCTGATTCCATTATTAACACTTGCTGCGAACAGTGGAGAAGCAAATACTTGAAAGCTCAAGAATCGCTATGTGATGTGAAAATCGAAACTGGGGAGCGATTGGAAGAATTTAATGCTGGGGAACCAGCAGTGAATAATGGACTCAGTAGCTTCAAGTCTCAGACTGTTACTTCTGCTCATCGGGGATGTAACGGGGATGGGGACGAGAATGAGAAGGTATTAGGTTTACAAGCTTGTATAGCTGAGAGGGACAGGGAAATATGTAGATTGAAGGAGCTTTTGGAGAGTGAAAAAAGAAGGGCTGATTCTAAGAGGAAGAGAGTTGCCGAAACTTGGAAGTTACTGGAACAAGAAAAGAATAAGGGAGCGCAAATTGCAAAACTTAAAGTGGAGAAGGCTGAGGGATATAGGGTTCAGATTGGTCAATTGGAGAAACAAGTTAGTGAAGCAAAACAGAAATTGAAATCTGAGACATCTGTGTTTAAAGCGGCGGCCAGAAGGCAGGATTTTAAAAAGCGCAGGTTATTTGCAGAGAAAAGAAAAGCCGAATTAGAAATGGCAAAAGCTAACGAAAAGTTGAAGGAGATTGAAAAGCACAAAGCCATTGAGATGGTTAAATTGGAGGAGCAGAAGGCACTTGCACAAGATAACTGGAACAAGTTTGTGGAAGAGAAATGTCGTGCGGATCAGATGTCTCAGCAGCTAGCAGAAGATAAGAGGACAATTGAGGATTTGAAGCGGAAGATGCTTGAGCTCTCATACCTGAGAAATCAAACTGAAATAGCCGTTGACATCAGTGCGAAAACTCAAAGTAGTCAATGTTCTAAAGTGAAATATTTGAAAAACAATCTGAACGTTGAAAAGTTACAAACAAAGCATACCAAGCTAAAATACAAGTTAGAAGCAAGTCGTTACAGTATTTTACATCACAGATTAGGTTGTCTAAAGATTGGTTTTGTTCAGCTTCTACGTCACTTTGATGTACTGGATGCATCTTTTTTGTCTGTTTCAGGAAGTACACAAGACCAAACAAAGAAGTTTTTCGACATGGATAATTTTGGTTTGATGGCAACTGTTTTGAAGTCTCTAGTTATGTTGCTTGAGGGTGAAAGCCTATCCGATGTTACTGCTCCTTGTCTTCCTGCAACAAATCAGCTGCATACTGAATTTTGCACAAATGATAGTTGCCAATTATTAGAAGGCACTGAATCCATTGATGCAATTGCATGCTTGCTCTTGGAAGAGATAAAGAACTGTTGGCTCCAAGGGATAAACCAAATTGATTTGTCAGATTCTGGATTAATGCCAGGCAATGATAATGTTCGACAACGGTCTAATGAAGAAGTGGGTCAACATACCACTGACAAGAATAATGATGTGTCCGGTTGTTTGAAAAGATGCCTGGTTTCTGATACTCGACCACATGCTCTTAAGAATGTCATCCTCTGTCACCTTATTGATATCGTGTCATTGGTGGAACTGGTAGCAAATGAAATGAGCTGGCACTGGACTGATATCAAACTTGTTCCTCAGCTGCTCGACATGCTTGACACATGTGTAGAGGAGAAAATTGCTGTTGCTGTCATTGTACTTCTCGGTAAACTTGGAAGGATTGGAGTTGATAACGGTGGATACGGAGTTCAAGGAGTTGAGAAACTGAGATGTAATCTGTTTGCTTATTTATGCCGCATCTCTTCCAAGAAAGCATGCTTTTCTATTCAAATTGCCACCGCCAATACACTCTTTGTCCTCCTTCCTCTTGGTCTTGAAGCCCTTTTTCATACTAACATCTATCTTTCAGCATATTCTAAGTCTGTTTTAGAAAATGTTGAAACTTTGAGGAAGTGGTTCTTTGGGCTGAGTAAAGATCAACAAATATTGCTATCTGTTCAATCCAAGAAGCTTCCAGAAGCTCAATCTCTTCTCCTTAGAATCATTAGAAAAAGCGGCGTTTCGCATGTCGAGGTAATCGACTCTCTCATTTCGAGTTCGACTTCGAATTTGAATTCTAACCAAAATGTACTTGTTTTTGATTTATTGATAAGAACTTATGTTCAAGCTAGGAGATTAAGAGAAGGTTCTGAAGCATTTCAATTGTTAAGAAAAAGAGGTTTTTGTGTTTCGATTAACGCTTGTAATGCGCTTTTAGGTGCAATTGTTAAGGTTGGGTGGGTTGATTTAGCTTGGAAGGTTTATGAGGATTTTGTTAAAAGTGGGAATATTGTTAATGTTTATACTTTGAATATTATGGTTAATGCTTTGTGTAAAGATGGGAAATTGGATAATGTTGGGGTTTATTTGTCTGAGATGGAGGAGAAAGGGGTTTATGCTGATCTTGTGACTTATAATACTTTGGTTAATGCTTATTGTCGTCGGGGGCTTGTTTCGGAAGCTTTTGGGTTGGTGGATTGTATGGCAGGTAAAGGGTTGAAGCCGGGACTTTTTACGTATAATGCTTTGATTAATGGTTTGTGTAAGGAGGGAAGCTATGAGAGAGCGAAACGTGTTTTGGATGAGATGTTGGGGGTTGGATTGTGTCCTAATGCAGCGACTTTTAATCCTATGTTGGTTGAGAGTTGTAGGAAGGAGGATGTTTGGGAGGCGGAGAGGGTTTTTAATGAAATGTTGCAGCGTGGAGTTGTTCCTGATTTGATTAGCTTTAGTTCTATTGTTGGGGTGTTTTCGAGGAATGGGGAACTTGGTCGGGCATTGGCGTATTTTGAGAAGATGAAAGGTGTTGGGTTGGTTCCTGATACTGTTATTTATACTATTCTTATCAATGGGTATTGTAGGAACGATGATGTGTCTGGGGCGCTTAAAATGCGGAATGAGATGGTGGAGCGGGGTTGTGTTATGGATGTGGTTACATATAATACTCTGTTGAATGGATTGTGTAGGGGTAAAATGCTTGATGATGCTGATGAACTGTTTAAGGAGATGGTGGAAAGGGGAGTTTTTCCTGATTTTTACACTGTAACAACTCTTATTCATGGTTATTGTCTTGTGTCTGAAGCATTCAGGTTGTGGGATGAAATGAAAGAAAAAGGTATTAAGCCCACCCTAGTCACTTGCAACACCATCATAAAAGGCTACCTGCGTGCTGGCAATGTGTCAAAGGCAAATGACTTTTTGAACACGATGATTTCGGAAGGAGTTCCTCCTGATTGCATCACATATAATACTCTTATAAATAGTTTTGTAAAGGAAGAGAACTTTGATCGAGCTTTTTTCTTGATTAATAACATGGAGGAACGAGGGCTGCTGCCTAATCTCGTCACATACAATGCAATTCTTGGTGGATTTTCTAGGCATGGTAGAATGCAAGAGGCTGAGATGGTATTACATAAGATGATTGATAAAGGTATCAATCCTGACAAATCAACTTACACATCACTAATAAATGGATATGTCTCTAAAGACAACATGAAAGAGGCATTCCGTGTCCATGATGAAATGCTGCAAAGGGGATTCGTCCCAGATGACAAATTCTAG

Protein sequence

>Msa0787240

MAVAAAETLKSDSIINTCCEQWRSKYLKAQESLCDVKIETGERLEEFNAGEPAVNNGLSSFKSQTVTSAHRGCNGDGDENEKVLGLQACIAERDREICRLKELLESEKRRADSKRKRVAETWKLLEQEKNKGAQIAKLKVEKAEGYRVQIGQLEKQVSEAKQKLKSETSVFKAAARRQDFKKRRLFAEKRKAELEMAKANEKLKEIEKHKAIEMVKLEEQKALAQDNWNKFVEEKCRADQMSQQLAEDKRTIEDLKRKMLELSYLRNQTEIAVDISAKTQSSQCSKVKYLKNNLNVEKLQTKHTKLKYKLEASRYSILHHRLGCLKIGFVQLLRHFDVLDASFLSVSGSTQDQTKKFFDMDNFGLMATVLKSLVMLLEGESLSDVTAPCLPATNQLHTEFCTNDSCQLLEGTESIDAIACLLLEEIKNCWLQGINQIDLSDSGLMPGNDNVRQRSNEEVGQHTTDKNNDVSGCLKRCLVSDTRPHALKNVILCHLIDIVSLVELVANEMSWHWTDIKLVPQLLDMLDTCVEEKIAVAVIVLLGKLGRIGVDNGGYGVQGVEKLRCNLFAYLCRISSKKACFSIQIATANTLFVLLPLGLEALFHTNIYLSAYSKSVLENVETLRKWFFGLSKDQQILLSVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISSSTSNLNSNQNVLVFDLLIRTYVQARRLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTVTTLIHGYCLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNVSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDDKF*