AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0933230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933230 MtrunA17_Chr6g0450151 91.111 900 66 4 1 889 1 897 0.0 1600
Msa0933230 MtrunA17_Chr6g0450071 80.780 692 63 6 1 682 1 632 0.0 1063
Msa0933230 MtrunA17_Chr6g0450071 82.609 46 8 0 258 303 631 676 2.36e-17 87.0
Msa0933230 MtrunA17_Chr1g0181651 30.769 351 181 12 129 449 165 483 8.74e-32 133
Msa0933230 MtrunA17_Chr1g0185901 36.500 200 121 4 268 465 362 557 1.17e-30 130
Msa0933230 MtrunA17_Chr2g0333291 30.743 296 160 9 267 546 257 523 1.88e-28 122
Msa0933230 MtrunA17_Chr4g0018601 33.058 242 152 6 267 500 313 552 1.15e-26 116
Msa0933230 MtrunA17_Chr1g0170751 35.263 190 117 5 264 449 286 473 2.49e-26 116
Msa0933230 MtrunA17_Chr2g0333801 35.484 155 77 3 267 420 6 138 1.77e-21 91.3
Msa0933230 MtrunA17_Chr1g0192031 38.650 163 77 7 268 418 74 225 2.27e-21 98.2
Msa0933230 MtrunA17_Chr7g0272631 45.556 90 48 1 268 356 87 176 4.83e-21 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933230 AT3G27860.2 32.427 478 242 17 268 725 61 477 1.04e-53 199
Msa0933230 AT3G27860.1 32.427 478 242 17 268 725 61 477 1.04e-53 199
Msa0933230 AT3G09670.2 37.569 181 109 3 272 449 201 380 4.33e-27 118
Msa0933230 AT3G09670.1 37.569 181 109 3 272 449 201 380 4.33e-27 118
Msa0933230 AT5G02950.1 30.147 272 171 6 176 439 8 268 2.94e-26 115
Msa0933230 AT5G02950.2 30.147 272 171 6 176 439 8 268 2.94e-26 115
Msa0933230 AT5G27650.1 32.292 192 106 5 268 446 171 351 1.43e-21 101
Msa0933230 AT3G05430.1 46.667 90 47 1 268 356 133 222 2.38e-20 97.4
Msa0933230 AT3G05430.2 37.226 137 72 4 268 400 133 259 2.71e-20 97.4
Msa0933230 AT3G48187.1 28.061 196 109 4 263 449 101 273 1.27e-14 79.0

Find 197 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTCCTGAACCTGATTT+TGG 0.131227 6_3:-1726194 None:intergenic
TTTCTCATCATCTGGTGTTT+GGG 0.196659 6_3:-1726741 None:intergenic
CTTTCTCATCATCTGGTGTT+TGG 0.201426 6_3:-1726742 None:intergenic
TTCTCACTTGTTTCCACTAT+TGG 0.202116 6_3:-1725249 None:intergenic
TCATCAAAATTATCCTTAAA+AGG 0.203644 6_3:-1725705 None:intergenic
CCCCTTCTTGCCGCTGGTCT+TGG 0.225027 6_3:-1727098 None:intergenic
TTTCTCTTCCTTCCAGTTCC+AGG 0.230105 6_3:-1726953 None:intergenic
GAAAAGCATCGCTGACATTA+TGG 0.243680 6_3:+1726238 Msa0933230:CDS
TCTGGTTGCAATTAAGTCTA+AGG 0.249968 6_3:+1726319 Msa0933230:CDS
CTTCTTGTCTTGTGAAGGTT+TGG 0.278613 6_3:-1727167 None:intergenic
CTGAATCGATGGAACCATTT+GGG 0.308664 6_3:+1724746 Msa0933230:CDS
GATTGATCAAGCTCAGATTC+TGG 0.308922 6_3:-1726980 None:intergenic
CTCTTGGTAGCTTACTTTGA+TGG 0.313271 6_3:+1725648 Msa0933230:CDS
GAGCGAGGTGAAAGGTCTTT+TGG 0.315567 6_3:+1727339 Msa0933230:CDS
CTCTCACTTGCCTCCACTAT+TGG 0.331300 6_3:-1725357 None:intergenic
AGGGTTTCTTTCTCATCATC+TGG 0.332565 6_3:-1726749 None:intergenic
GGATAGTGAGGAGGGAGAAA+AGG 0.332631 6_3:+1725296 Msa0933230:CDS
TATTGATATTGCTAGTGTTC+TGG 0.336830 6_3:+1725989 Msa0933230:CDS
TTCTCGCTTATCTCCACAAT+TGG 0.342327 6_3:-1725153 None:intergenic
ATGCTCTCTGTGCCACTATC+AGG 0.344127 6_3:-1725906 None:intergenic
AATGATTCCCCGGTGAATAA+TGG 0.346633 6_3:+1724904 Msa0933230:CDS
GAAGGAACCTTGACTTTCTC+TGG 0.349916 6_3:-1726776 None:intergenic
TCTACCTTTGTCTTGAAATC+AGG 0.353557 6_3:-1727316 None:intergenic
TTCTGCTTTCTTCTACGGTT+CGG 0.373335 6_3:-1726218 None:intergenic
GCTGAAAATGTTATGGTTGA+AGG 0.374647 6_3:+1724784 Msa0933230:CDS
TTCAAGTCCGAGAACCCGTT+TGG 0.377020 6_3:-1726090 None:intergenic
TAGTTTAGCTGAAAATGTTA+TGG 0.387200 6_3:+1724777 Msa0933230:CDS
GATAGTGAGGAGGGAGAAAA+GGG 0.387448 6_3:+1725297 Msa0933230:CDS
GTGCCCCTCCTTGACATTTG+TGG 0.393072 6_3:-1726839 None:intergenic
AAGAGAAAAGAGTTGCTTGC+AGG 0.395656 6_3:+1726395 Msa0933230:CDS
AAAAGCATCGCTGACATTAT+GGG 0.401533 6_3:+1726239 Msa0933230:CDS
CCTTGACTTTCTCTGGATCA+AGG 0.404674 6_3:-1726769 None:intergenic
TGCAAGTGATGATGAAGTTC+TGG 0.405456 6_3:+1726301 Msa0933230:CDS
GTGTCTTCTTTGTTGAAAAC+GGG 0.409749 6_3:+1725054 Msa0933230:CDS
AGTCGTCCGTTTGTTGTGGC+GGG 0.411945 6_3:+1725816 Msa0933230:CDS
ATCGGTCCCCTTCTTGCCGC+TGG 0.412154 6_3:-1727104 None:intergenic
AATGAGAAGGATAGTGAGGA+GGG 0.420006 6_3:+1725288 Msa0933230:CDS
ATGATTCCCCGGTGAATAAT+GGG 0.423865 6_3:+1724905 Msa0933230:CDS
TCATCCGTGGTGGCCAGGTC+GGG 0.423902 6_3:+1725569 Msa0933230:CDS
GGTGTCTTCTTTGTTGAAAA+CGG 0.424689 6_3:+1725053 Msa0933230:CDS
GAGATGGTGTGGCTGGAGTT+AGG 0.425440 6_3:-1727201 None:intergenic
TCTTTCTTCTTGTCTTGTGA+AGG 0.429340 6_3:-1727172 None:intergenic
GTCATACAGCAGAAACTTCA+AGG 0.429955 6_3:+1727256 Msa0933230:CDS
GAGGATCCCAAACGGGTTCT+CGG 0.430303 6_3:+1726083 Msa0933230:CDS
ACTGAATCGATGGAACCATT+TGG 0.431119 6_3:+1724745 Msa0933230:CDS
GCCGAAAGAACCAAATGAAA+AGG 0.433551 6_3:+1726553 Msa0933230:CDS
GCAGGAGAAGAATGAGCTTA+AGG 0.435652 6_3:+1724813 Msa0933230:CDS
GTGGAAAAGAAAGCTGTGAC+AGG 0.440805 6_3:+1726441 Msa0933230:CDS
TTCGGCGGTTACACTTGAAC+CGG 0.441099 6_3:+1725929 Msa0933230:CDS
ACCAAGACCAGCGGCAAGAA+GGG 0.445474 6_3:+1727097 Msa0933230:CDS
TCAAGTCCGAGAACCCGTTT+GGG 0.445752 6_3:-1726089 None:intergenic
ATATCACCTAGCGAAGATTC+TGG 0.445815 6_3:+1727010 Msa0933230:CDS
TTGACCCCAAAATCAGGTTC+AGG 0.446624 6_3:+1726188 Msa0933230:CDS
GACTGTTGAGGTTCCAATAG+TGG 0.448213 6_3:+1725236 Msa0933230:CDS
TTCTCATCATCTGGTGTTTG+GGG 0.448396 6_3:-1726740 None:intergenic
AACGGGAAGGAGAATGAGGA+GGG 0.451447 6_3:+1725192 Msa0933230:CDS
TTTGTGAAGGGAAGAGGTGC+TGG 0.451932 6_3:+1726644 Msa0933230:CDS
AGTCCTCTTCAAACGGCCCT+TGG 0.454433 6_3:-1726151 None:intergenic
GTCCTCTTCAAACGGCCCTT+GGG 0.454567 6_3:-1726150 None:intergenic
TTTGAAGGAGAATGATTCTC+AGG 0.456489 6_3:+1724876 Msa0933230:CDS
AGGGGCAAATCGCAGCATTC+AGG 0.456509 6_3:+1726461 Msa0933230:CDS
AACAGCATAGGTGAAAGCTT+TGG 0.458113 6_3:-1725748 None:intergenic
AATGAAGCTGAACCTGGAAC+TGG 0.462625 6_3:+1726941 Msa0933230:CDS
CTGCCATTGACCCCAAAATC+AGG 0.463002 6_3:+1726182 Msa0933230:CDS
GTCATCCGTGGTGGCCAGGT+CGG 0.463100 6_3:+1725568 Msa0933230:CDS
TAGTGGCACAGAGAGCATTT+CGG 0.469354 6_3:+1725911 Msa0933230:CDS
TATTGCTAGTGTTCTGGAGC+TGG 0.469362 6_3:+1725995 Msa0933230:CDS
TTTGAAGGAGAATGACTCTC+AGG 0.472324 6_3:+1725002 Msa0933230:CDS
AAGAGTCATCCGTGGTGGCC+AGG 0.472435 6_3:+1725564 Msa0933230:CDS
AAACTAGTTTCAACCCCAAA+TGG 0.472605 6_3:-1724760 None:intergenic
GTCTATTGAGGTACCAATAG+TGG 0.480190 6_3:+1725344 Msa0933230:CDS
ATATAAGTTACCTTGTTATG+AGG 0.486781 6_3:+1726064 Msa0933230:CDS
TTGATGCAAAAGATAAGGAA+TGG 0.488934 6_3:+1726276 Msa0933230:CDS
TTGTTATGAGGATCCCAAAC+GGG 0.489406 6_3:+1726076 Msa0933230:CDS
CTTGACTTTCTCTGGATCAA+GGG 0.492651 6_3:-1726768 None:intergenic
ACTTTGATGGAACATTTGCT+TGG 0.495401 6_3:+1725661 Msa0933230:CDS
ATGTTGATATTGAAGTGAAC+GGG 0.496688 6_3:+1725175 Msa0933230:CDS
GATGAGTCGTCCGTTTGTTG+TGG 0.497438 6_3:+1725812 Msa0933230:CDS
AGCTGGAAATATTGAAGGCT+CGG 0.497817 6_3:+1726012 Msa0933230:CDS
GAATACAATGAAGCTGAACC+TGG 0.498419 6_3:+1726935 Msa0933230:CDS
GACTGTGGAGATTCCAATTG+TGG 0.500206 6_3:+1725140 Msa0933230:CDS
AACAAAGATGACAATTGTGA+TGG 0.500623 6_3:+1725420 Msa0933230:CDS
TCTGGAGCTGGAAATATTGA+AGG 0.502048 6_3:+1726007 Msa0933230:CDS
AGAGACTTTGTGAAGGGAAG+AGG 0.502911 6_3:+1726638 Msa0933230:CDS
CAAGAAGCTGTAAATGAGGT+TGG 0.503519 6_3:+1725771 Msa0933230:CDS
TTTGACAGAATTTCGGCTGA+AGG 0.505616 6_3:-1726794 None:intergenic
ACAGCAGAAACTTCAAGGTC+TGG 0.505797 6_3:+1727261 Msa0933230:CDS
GAAACAAAAGAATAGACTCT+TGG 0.505954 6_3:+1725632 Msa0933230:CDS
GTCGTCCGTTTGTTGTGGCG+GGG 0.506854 6_3:+1725817 Msa0933230:CDS
CAGTGAGGCATTTCAAGAGT+TGG 0.507802 6_3:+1726697 Msa0933230:CDS
GACTATTGAGGATTCAATAG+TGG 0.508888 6_3:+1725452 Msa0933230:CDS
AGCCACACCATCTCTGTCAC+AGG 0.510870 6_3:+1727210 Msa0933230:CDS
TCAGGTTGTGAATGATTCCC+CGG 0.512345 6_3:+1724894 Msa0933230:CDS
GATGAATGAGAAGGATAGTG+AGG 0.516877 6_3:+1725284 Msa0933230:CDS
GTCTGAATTCGCTCCAATGT+TGG 0.517774 6_3:+1725848 Msa0933230:CDS
TCGTCCGTTTGTTGTGGCGG+GGG 0.517804 6_3:+1725818 Msa0933230:CDS
TCTTCAAACGGCCCTTGGGA+TGG 0.521494 6_3:-1726146 None:intergenic
AGTGAACGGGAAGGAGAATG+AGG 0.522445 6_3:+1725188 Msa0933230:CDS
AGCGGAGAGGAAAACGATGA+AGG 0.522589 6_3:+1726527 Msa0933230:CDS
AGATGTTGATGCAAAAGATA+AGG 0.523242 6_3:+1726271 Msa0933230:CDS
GAATGAGAAGGATAGTGAGG+AGG 0.523714 6_3:+1725287 Msa0933230:CDS
GAGAACATCAGCGGTGGGAG+CGG 0.524254 6_3:+1726509 Msa0933230:CDS
AACCAAGACCAGCGGCAAGA+AGG 0.531503 6_3:+1727096 Msa0933230:CDS
CCGAAAGAACCAAATGAAAA+GGG 0.533668 6_3:+1726554 Msa0933230:CDS
GTAGAGTAGTCCTCTTCAAA+CGG 0.540996 6_3:-1726158 None:intergenic
ACTGATACAGAGACTGTAAG+AGG 0.542096 6_3:+1726419 Msa0933230:CDS
CCAAGACCAGCGGCAAGAAG+GGG 0.545038 6_3:+1727098 Msa0933230:CDS
GCGGAGAGGAAAACGATGAA+GGG 0.547080 6_3:+1726528 Msa0933230:CDS
AATGTTGATATTGAAGTGAA+CGG 0.548378 6_3:+1725174 Msa0933230:CDS
GAAAAGGGTGAAAATTGTGA+TGG 0.548470 6_3:+1725312 Msa0933230:CDS
TTAAAAGGCTTCAATTGTGA+CGG 0.549559 6_3:-1725690 None:intergenic
GAGTCGTCCGTTTGTTGTGG+CGG 0.551345 6_3:+1725815 Msa0933230:CDS
GAAGACACCCCATTATTCAC+CGG 0.552105 6_3:-1724913 None:intergenic
TGTGACAGAGATGGTGTGGC+TGG 0.552295 6_3:-1727208 None:intergenic
GAAATCAGGCGATTTGTCGT+CGG 0.552919 6_3:-1727302 None:intergenic
ATCCCAAGGGCCGTTTGAAG+AGG 0.558737 6_3:+1726148 Msa0933230:CDS
AAGCTGTAAATGAGGTTGGA+AGG 0.558828 6_3:+1725775 Msa0933230:CDS
ACTGAGAAGGAGAGCGCGGA+AGG 0.560275 6_3:+1725396 Msa0933230:CDS
GACGATCAACTTAGATGTCT+CGG 0.562618 6_3:-1727236 None:intergenic
AAAGCATCGCTGACATTATG+GGG 0.562780 6_3:+1726240 Msa0933230:CDS
CTGGTTGCAATTAAGTCTAA+GGG 0.563006 6_3:+1726320 Msa0933230:CDS
CGCTTAGTCCACAAATGTCA+AGG 0.564092 6_3:+1726831 Msa0933230:CDS
GCAAGTTCCGACGCATCAGA+CGG 0.564834 6_3:-1725600 None:intergenic
TATGGTTGAAGGTTCAGAGC+AGG 0.565252 6_3:+1724795 Msa0933230:CDS
TTGACGATTTGATTGATGAA+AGG 0.567900 6_3:+1725502 Msa0933230:CDS
TCAATCAGAGACTTTGTGAA+GGG 0.572253 6_3:+1726632 Msa0933230:CDS
TGTGATAAGAAAGTCAAAGA+AGG 0.573083 6_3:+1725102 Msa0933230:CDS
AGTGGAGGCTAGTGAGAGCA+TGG 0.574743 6_3:+1725470 Msa0933230:CDS
TGATGCAAAAGATAAGGAAT+GGG 0.574961 6_3:+1726277 Msa0933230:CDS
TTGAAACTCGAGGAGAAAGC+AGG 0.575194 6_3:-1726667 None:intergenic
CTTGTTATGAGGATCCCAAA+CGG 0.575919 6_3:+1726075 Msa0933230:CDS
GGAAAAGAAAGCTGTGACAG+GGG 0.576442 6_3:+1726443 Msa0933230:CDS
GAACGGGAAGGAGAATGAGG+AGG 0.577213 6_3:+1725191 Msa0933230:CDS
AAGGCTTCAATTGTGACGGA+TGG 0.578767 6_3:-1725686 None:intergenic
TGGACCAGCCAAGAAAAGAA+AGG 0.581389 6_3:+1727030 Msa0933230:CDS
AAGGTAGAGAGCGAGGTGAA+AGG 0.582258 6_3:+1727331 Msa0933230:CDS
TGGGAAGATCGAGACTATTG+AGG 0.585945 6_3:+1725440 Msa0933230:CDS
AGCTGTAAATGAGGTTGGAA+GGG 0.590294 6_3:+1725776 Msa0933230:CDS
ACAAAGATGACAATTGTGAT+GGG 0.590514 6_3:+1725421 Msa0933230:CDS
GCAGTTGAAGCACCATCCCA+AGG 0.591867 6_3:+1726134 Msa0933230:CDS
AAAAGGGTGAAAATTGTGAT+GGG 0.593063 6_3:+1725313 Msa0933230:CDS
TGAATCGATGGAACCATTTG+GGG 0.594772 6_3:+1724747 Msa0933230:CDS
TAGTCCACAAATGTCAAGGA+GGG 0.595379 6_3:+1726835 Msa0933230:CDS
CGATGTTGAAATGACTGAGA+AGG 0.596335 6_3:+1725383 Msa0933230:CDS
ACTTGAGAAAGTAACTCAGC+CGG 0.596936 6_3:-1725948 None:intergenic
GCTGGTCCAGAATCTTCGCT+AGG 0.598905 6_3:-1727016 None:intergenic
TTATGATCCGTCTGATGCGT+CGG 0.599363 6_3:+1725593 Msa0933230:CDS
AAGACACCCCATTATTCACC+GGG 0.600301 6_3:-1724912 None:intergenic
CTGTTATACTTTGAAACTCG+AGG 0.601039 6_3:-1726677 None:intergenic
TACAGCTTCTTGAACAGCAT+AGG 0.602664 6_3:-1725760 None:intergenic
TCTCTGATTGAAGTAGTGAA+AGG 0.604217 6_3:-1726620 None:intergenic
TTCAATCAGAGACTTTGTGA+AGG 0.604784 6_3:+1726631 Msa0933230:CDS
AAATGAGGTTGGAAGGGTGC+TGG 0.605434 6_3:+1725782 Msa0933230:CDS
CGTTTGGGATCCTCATAACA+AGG 0.612389 6_3:-1726074 None:intergenic
TTTGATGATATGGTGGGACA+AGG 0.614353 6_3:+1725720 Msa0933230:CDS
TGGAAAAGAAAGCTGTGACA+GGG 0.618152 6_3:+1726442 Msa0933230:CDS
TAAACCCGACCTGGCCACCA+CGG 0.618975 6_3:-1725573 None:intergenic
AGAAGTTCATTGTATCGCGA+AGG 0.620174 6_3:+1726899 Msa0933230:CDS
TGATATTGAAGTGAACGGGA+AGG 0.622379 6_3:+1725179 Msa0933230:CDS
GACGGATCATAAACCCGACC+TGG 0.623787 6_3:-1725582 None:intergenic
CAAGACAAAGGTAGAGAGCG+AGG 0.627059 6_3:+1727324 Msa0933230:CDS
ATCGCCTGATTTCAAGACAA+AGG 0.628439 6_3:+1727312 Msa0933230:CDS
GGTAATGAGAACATCAGCGG+TGG 0.629748 6_3:+1726503 Msa0933230:CDS
TATTGAGGATTCAATAGTGG+AGG 0.631691 6_3:+1725455 Msa0933230:CDS
TGGGAAGATAGAGTCTATTG+AGG 0.636228 6_3:+1725332 Msa0933230:CDS
TGTGGTTGATACTGAATCGA+TGG 0.639717 6_3:+1724735 Msa0933230:CDS
TTGAAAACGGGAGAAAACGA+TGG 0.643487 6_3:+1725066 Msa0933230:CDS
AGTCCACAAATGTCAAGGAG+GGG 0.647484 6_3:+1726836 Msa0933230:CDS
CTGATTGAAGTAGTGAAAGG+AGG 0.649899 6_3:-1726617 None:intergenic
TCGGTACCCTGTGACAGAGA+TGG 0.651603 6_3:-1727217 None:intergenic
TGTTCAAGAAGCTGTAAATG+AGG 0.656142 6_3:+1725767 Msa0933230:CDS
AAGCTGAACCTGGAACTGGA+AGG 0.657278 6_3:+1726945 Msa0933230:CDS
TATTGAGGTACCAATAGTGG+AGG 0.665817 6_3:+1725347 Msa0933230:CDS
GATACAGAGACTGTAAGAGG+TGG 0.665933 6_3:+1726422 Msa0933230:CDS
CATCAGCGGTGGGAGCGGAG+AGG 0.666693 6_3:+1726514 Msa0933230:CDS
CAGTTGAAGCACCATCCCAA+GGG 0.667937 6_3:+1726135 Msa0933230:CDS
ACCCTGTGACAGAGATGGTG+TGG 0.668589 6_3:-1727212 None:intergenic
GTAATGAGAACATCAGCGGT+GGG 0.671348 6_3:+1726504 Msa0933230:CDS
CAAATCGCAGCATTCAGGTG+AGG 0.675770 6_3:+1726466 Msa0933230:CDS
TTAGTCCACAAATGTCAAGG+AGG 0.675813 6_3:+1726834 Msa0933230:CDS
TGATGTTGAGATGAATGAGA+AGG 0.677474 6_3:+1725275 Msa0933230:CDS
GCCACACCATCTCTGTCACA+GGG 0.681280 6_3:+1727211 Msa0933230:CDS
TGGCACAGAGAGCATTTCGG+CGG 0.682197 6_3:+1725914 Msa0933230:CDS
CCTTGATCCAGAGAAAGTCA+AGG 0.684171 6_3:+1726769 Msa0933230:CDS
TGATTCTGAAGTGAATAATG+AGG 0.686144 6_3:+1725032 Msa0933230:CDS
AATGACTGAGAAGGAGAGCG+CGG 0.688964 6_3:+1725392 Msa0933230:CDS
AGATTAAGAGTCATCCGTGG+TGG 0.700219 6_3:+1725559 Msa0933230:CDS
TCTGGTAATGAGAACATCAG+CGG 0.703698 6_3:+1726500 Msa0933230:CDS
GCTCGTGAAACCAAGACCAG+CGG 0.704734 6_3:+1727088 Msa0933230:CDS
AAGCATCGCTGACATTATGG+GGG 0.710590 6_3:+1726241 Msa0933230:CDS
ACGGGAAGGAGAATGAGGAG+GGG 0.710995 6_3:+1725193 Msa0933230:CDS
TCTTCTGAGATGAATAATGA+CGG 0.712707 6_3:+1724931 Msa0933230:CDS
TTTGGAGGATGTGAACAACA+TGG 0.726968 6_3:+1727357 Msa0933230:CDS
TGATTCCCCGGTGAATAATG+GGG 0.731764 6_3:+1724906 Msa0933230:CDS
AGTTTCAAAGTATAACAGTG+AGG 0.743340 6_3:+1726682 Msa0933230:CDS
GAAAGATTAAGAGTCATCCG+TGG 0.746341 6_3:+1725556 Msa0933230:CDS
AGACACCCCATTATTCACCG+GGG 0.792139 6_3:-1724911 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATCAAAATTATCCTTAAA+AGG - chr6_3:1725708-1725727 None:intergenic 20.0%
!!! TAAGGATAATTTTGATGATA+TGG + chr6_3:1725710-1725729 Msa0933230:CDS 20.0%
! TAGTTTAGCTGAAAATGTTA+TGG + chr6_3:1724777-1724796 Msa0933230:CDS 25.0%
! AATGTTGATATTGAAGTGAA+CGG + chr6_3:1725174-1725193 Msa0933230:CDS 25.0%
!!! GATAATTTTGATGATATGGT+GGG + chr6_3:1725714-1725733 Msa0933230:CDS 25.0%
!! ATATAAGTTACCTTGTTATG+AGG + chr6_3:1726064-1726083 Msa0933230:CDS 25.0%
!! TCTTCTGAGATGAATAATGA+CGG + chr6_3:1724931-1724950 Msa0933230:CDS 30.0%
!! TGATTCTGAAGTGAATAATG+AGG + chr6_3:1725032-1725051 Msa0933230:CDS 30.0%
TGTGATAAGAAAGTCAAAGA+AGG + chr6_3:1725102-1725121 Msa0933230:CDS 30.0%
TGATGAAAAAATTCAGACTG+TGG + chr6_3:1725125-1725144 Msa0933230:CDS 30.0%
ATGTTGATATTGAAGTGAAC+GGG + chr6_3:1725175-1725194 Msa0933230:CDS 30.0%
AAAAGGGTGAAAATTGTGAT+GGG + chr6_3:1725313-1725332 Msa0933230:CDS 30.0%
AACAAAGATGACAATTGTGA+TGG + chr6_3:1725420-1725439 Msa0933230:CDS 30.0%
ACAAAGATGACAATTGTGAT+GGG + chr6_3:1725421-1725440 Msa0933230:CDS 30.0%
TTGACGATTTGATTGATGAA+AGG + chr6_3:1725502-1725521 Msa0933230:CDS 30.0%
GAAACAAAAGAATAGACTCT+TGG + chr6_3:1725632-1725651 Msa0933230:CDS 30.0%
TTAAAAGGCTTCAATTGTGA+CGG - chr6_3:1725693-1725712 None:intergenic 30.0%
!! GGATAATTTTGATGATATGG+TGG + chr6_3:1725713-1725732 Msa0933230:CDS 30.0%
AAAAATTCAGGAATCAAGGA+AGG + chr6_3:1725873-1725892 Msa0933230:CDS 30.0%
TATTGATATTGCTAGTGTTC+TGG + chr6_3:1725989-1726008 Msa0933230:CDS 30.0%
! TCAGCTTTTTATCTCTCAAA+AGG + chr6_3:1726038-1726057 Msa0933230:CDS 30.0%
AGATGTTGATGCAAAAGATA+AGG + chr6_3:1726271-1726290 Msa0933230:CDS 30.0%
TTGATGCAAAAGATAAGGAA+TGG + chr6_3:1726276-1726295 Msa0933230:CDS 30.0%
TGATGCAAAAGATAAGGAAT+GGG + chr6_3:1726277-1726296 Msa0933230:CDS 30.0%
! GACAAAAAACCCTTTTCATT+TGG - chr6_3:1726566-1726585 None:intergenic 30.0%
AGTTTCAAAGTATAACAGTG+AGG + chr6_3:1726682-1726701 Msa0933230:CDS 30.0%
! GCGAATTTTTGACAGAATTT+CGG - chr6_3:1726804-1726823 None:intergenic 30.0%
! AAACTAGTTTCAACCCCAAA+TGG - chr6_3:1724763-1724782 None:intergenic 35.0%
GCTGAAAATGTTATGGTTGA+AGG + chr6_3:1724784-1724803 Msa0933230:CDS 35.0%
!! TGTTTTCAAGACTGAGGTTT+CGG + chr6_3:1724852-1724871 Msa0933230:CDS 35.0%
TTTGAAGGAGAATGATTCTC+AGG + chr6_3:1724876-1724895 Msa0933230:CDS 35.0%
GGTGTCTTCTTTGTTGAAAA+CGG + chr6_3:1725053-1725072 Msa0933230:CDS 35.0%
GTGTCTTCTTTGTTGAAAAC+GGG + chr6_3:1725054-1725073 Msa0933230:CDS 35.0%
TGAAAAAATTGCGACTGTTG+AGG + chr6_3:1725224-1725243 Msa0933230:CDS 35.0%
TTCTCACTTGTTTCCACTAT+TGG - chr6_3:1725252-1725271 None:intergenic 35.0%
TGATGTTGAGATGAATGAGA+AGG + chr6_3:1725275-1725294 Msa0933230:CDS 35.0%
GAAAAGGGTGAAAATTGTGA+TGG + chr6_3:1725312-1725331 Msa0933230:CDS 35.0%
GACTATTGAGGATTCAATAG+TGG + chr6_3:1725452-1725471 Msa0933230:CDS 35.0%
TATTGAGGATTCAATAGTGG+AGG + chr6_3:1725455-1725474 Msa0933230:CDS 35.0%
! TTTCTGTTGGCGATTTTGTT+TGG + chr6_3:1725532-1725551 Msa0933230:CDS 35.0%
!! TTCTGTTGGCGATTTTGTTT+GGG + chr6_3:1725533-1725552 Msa0933230:CDS 35.0%
ACTTTGATGGAACATTTGCT+TGG + chr6_3:1725661-1725680 Msa0933230:CDS 35.0%
! GTCACAATTGAAGCCTTTTA+AGG + chr6_3:1725692-1725711 Msa0933230:CDS 35.0%
TGTTCAAGAAGCTGTAAATG+AGG + chr6_3:1725767-1725786 Msa0933230:CDS 35.0%
! GCTTTTTATCTCTCAAAAGG+AGG + chr6_3:1726041-1726060 Msa0933230:CDS 35.0%
! TACTTCCTGAACCTGATTTT+GGG - chr6_3:1726196-1726215 None:intergenic 35.0%
! TGCTTTTCTGCTTTCTTCTA+CGG - chr6_3:1726226-1726245 None:intergenic 35.0%
!! AAAAGCATCGCTGACATTAT+GGG + chr6_3:1726239-1726258 Msa0933230:CDS 35.0%
TCTGGTTGCAATTAAGTCTA+AGG + chr6_3:1726319-1726338 Msa0933230:CDS 35.0%
CTGGTTGCAATTAAGTCTAA+GGG + chr6_3:1726320-1726339 Msa0933230:CDS 35.0%
! AACTCTTTTCTCTTCTGAAC+TGG - chr6_3:1726389-1726408 None:intergenic 35.0%
!!! CCCTTTTCATTTGGTTCTTT+CGG - chr6_3:1726557-1726576 None:intergenic 35.0%
CCGAAAGAACCAAATGAAAA+GGG + chr6_3:1726554-1726573 Msa0933230:CDS 35.0%
!!! AGGGTTTTTTGTCAAGAGAA+AGG + chr6_3:1726573-1726592 Msa0933230:CDS 35.0%
TCTCTGATTGAAGTAGTGAA+AGG - chr6_3:1726623-1726642 None:intergenic 35.0%
TTCAATCAGAGACTTTGTGA+AGG + chr6_3:1726631-1726650 Msa0933230:CDS 35.0%
TCAATCAGAGACTTTGTGAA+GGG + chr6_3:1726632-1726651 Msa0933230:CDS 35.0%
!! CTGTTATACTTTGAAACTCG+AGG - chr6_3:1726680-1726699 None:intergenic 35.0%
TTTCTCATCATCTGGTGTTT+GGG - chr6_3:1726744-1726763 None:intergenic 35.0%
! AGTTCTCTCCTTTCTTTTCT+TGG - chr6_3:1727041-1727060 None:intergenic 35.0%
! TTGTCCTCCAGATTTTTCAT+CGG - chr6_3:1727125-1727144 None:intergenic 35.0%
TCTTTCTTCTTGTCTTGTGA+AGG - chr6_3:1727175-1727194 None:intergenic 35.0%
TCTACCTTTGTCTTGAAATC+AGG - chr6_3:1727319-1727338 None:intergenic 35.0%
! TGTGGTTGATACTGAATCGA+TGG + chr6_3:1724735-1724754 Msa0933230:CDS 40.0%
ACTGAATCGATGGAACCATT+TGG + chr6_3:1724745-1724764 Msa0933230:CDS 40.0%
CTGAATCGATGGAACCATTT+GGG + chr6_3:1724746-1724765 Msa0933230:CDS 40.0%
TGAATCGATGGAACCATTTG+GGG + chr6_3:1724747-1724766 Msa0933230:CDS 40.0%
!! GAGTAGTGTTTTCAAGACTG+AGG + chr6_3:1724846-1724865 Msa0933230:CDS 40.0%
AATGATTCCCCGGTGAATAA+TGG + chr6_3:1724904-1724923 Msa0933230:CDS 40.0%
ATGATTCCCCGGTGAATAAT+GGG + chr6_3:1724905-1724924 Msa0933230:CDS 40.0%
! GACTGAGGTTTCGATTTTGA+AGG + chr6_3:1724987-1725006 Msa0933230:CDS 40.0%
TTTGAAGGAGAATGACTCTC+AGG + chr6_3:1725002-1725021 Msa0933230:CDS 40.0%
TTGAAAACGGGAGAAAACGA+TGG + chr6_3:1725066-1725085 Msa0933230:CDS 40.0%
TTCTCGCTTATCTCCACAAT+TGG - chr6_3:1725156-1725175 None:intergenic 40.0%
TGATATTGAAGTGAACGGGA+AGG + chr6_3:1725179-1725198 Msa0933230:CDS 40.0%
GATGAATGAGAAGGATAGTG+AGG + chr6_3:1725284-1725303 Msa0933230:CDS 40.0%
AATGAGAAGGATAGTGAGGA+GGG + chr6_3:1725288-1725307 Msa0933230:CDS 40.0%
TGGGAAGATAGAGTCTATTG+AGG + chr6_3:1725332-1725351 Msa0933230:CDS 40.0%
! GTCTATTGAGGTACCAATAG+TGG + chr6_3:1725344-1725363 Msa0933230:CDS 40.0%
! TATTGAGGTACCAATAGTGG+AGG + chr6_3:1725347-1725366 Msa0933230:CDS 40.0%
CGATGTTGAAATGACTGAGA+AGG + chr6_3:1725383-1725402 Msa0933230:CDS 40.0%
!! GAAAGGTGTGACTTTTCTGT+TGG + chr6_3:1725519-1725538 Msa0933230:CDS 40.0%
!! TCTGTTGGCGATTTTGTTTG+GGG + chr6_3:1725534-1725553 Msa0933230:CDS 40.0%
GAAAGATTAAGAGTCATCCG+TGG + chr6_3:1725556-1725575 Msa0933230:CDS 40.0%
! CTCTTGGTAGCTTACTTTGA+TGG + chr6_3:1725648-1725667 Msa0933230:CDS 40.0%
! TTTGATGATATGGTGGGACA+AGG + chr6_3:1725720-1725739 Msa0933230:CDS 40.0%
AACAGCATAGGTGAAAGCTT+TGG - chr6_3:1725751-1725770 None:intergenic 40.0%
TACAGCTTCTTGAACAGCAT+AGG - chr6_3:1725763-1725782 None:intergenic 40.0%
CAAGAAGCTGTAAATGAGGT+TGG + chr6_3:1725771-1725790 Msa0933230:CDS 40.0%
AAGCTGTAAATGAGGTTGGA+AGG + chr6_3:1725775-1725794 Msa0933230:CDS 40.0%
AGCTGTAAATGAGGTTGGAA+GGG + chr6_3:1725776-1725795 Msa0933230:CDS 40.0%
! CCTGAATTTTTCGCCAACAT+TGG - chr6_3:1725864-1725883 None:intergenic 40.0%
CCAATGTTGGCGAAAAATTC+AGG + chr6_3:1725861-1725880 Msa0933230:CDS 40.0%
GGCGAAAAATTCAGGAATCA+AGG + chr6_3:1725869-1725888 Msa0933230:CDS 40.0%
ACTTGAGAAAGTAACTCAGC+CGG - chr6_3:1725951-1725970 None:intergenic 40.0%
! TCTGGAGCTGGAAATATTGA+AGG + chr6_3:1726007-1726026 Msa0933230:CDS 40.0%
AGCTGGAAATATTGAAGGCT+CGG + chr6_3:1726012-1726031 Msa0933230:CDS 40.0%
! CTTGTTATGAGGATCCCAAA+CGG + chr6_3:1726075-1726094 Msa0933230:CDS 40.0%
TTGTTATGAGGATCCCAAAC+GGG + chr6_3:1726076-1726095 Msa0933230:CDS 40.0%
GTAGAGTAGTCCTCTTCAAA+CGG - chr6_3:1726161-1726180 None:intergenic 40.0%
! ACTTCCTGAACCTGATTTTG+GGG - chr6_3:1726195-1726214 None:intergenic 40.0%
! CTACTTCCTGAACCTGATTT+TGG - chr6_3:1726197-1726216 None:intergenic 40.0%
TTCTGCTTTCTTCTACGGTT+CGG - chr6_3:1726221-1726240 None:intergenic 40.0%
!! GAAAAGCATCGCTGACATTA+TGG + chr6_3:1726238-1726257 Msa0933230:CDS 40.0%
!! AAAGCATCGCTGACATTATG+GGG + chr6_3:1726240-1726259 Msa0933230:CDS 40.0%
! TGCAAGTGATGATGAAGTTC+TGG + chr6_3:1726301-1726320 Msa0933230:CDS 40.0%
AAAAAAGACAACGACGATGC+AGG + chr6_3:1726353-1726372 Msa0933230:CDS 40.0%
AAAAAGACAACGACGATGCA+GGG + chr6_3:1726354-1726373 Msa0933230:CDS 40.0%
AAGAGAAAAGAGTTGCTTGC+AGG + chr6_3:1726395-1726414 Msa0933230:CDS 40.0%
ACTGATACAGAGACTGTAAG+AGG + chr6_3:1726419-1726438 Msa0933230:CDS 40.0%
TGGAAAAGAAAGCTGTGACA+GGG + chr6_3:1726442-1726461 Msa0933230:CDS 40.0%
! TCTGGTAATGAGAACATCAG+CGG + chr6_3:1726500-1726519 Msa0933230:CDS 40.0%
GCCGAAAGAACCAAATGAAA+AGG + chr6_3:1726553-1726572 Msa0933230:CDS 40.0%
CTGATTGAAGTAGTGAAAGG+AGG - chr6_3:1726620-1726639 None:intergenic 40.0%
TTCTCATCATCTGGTGTTTG+GGG - chr6_3:1726743-1726762 None:intergenic 40.0%
CTTTCTCATCATCTGGTGTT+TGG - chr6_3:1726745-1726764 None:intergenic 40.0%
AGGGTTTCTTTCTCATCATC+TGG - chr6_3:1726752-1726771 None:intergenic 40.0%
CTTGACTTTCTCTGGATCAA+GGG - chr6_3:1726771-1726790 None:intergenic 40.0%
TTTGACAGAATTTCGGCTGA+AGG - chr6_3:1726797-1726816 None:intergenic 40.0%
TTAGTCCACAAATGTCAAGG+AGG + chr6_3:1726834-1726853 Msa0933230:CDS 40.0%
TAGTCCACAAATGTCAAGGA+GGG + chr6_3:1726835-1726854 Msa0933230:CDS 40.0%
AGAAGTTCATTGTATCGCGA+AGG + chr6_3:1726899-1726918 Msa0933230:CDS 40.0%
GAATACAATGAAGCTGAACC+TGG + chr6_3:1726935-1726954 Msa0933230:CDS 40.0%
GATTGATCAAGCTCAGATTC+TGG - chr6_3:1726983-1727002 None:intergenic 40.0%
ATATCACCTAGCGAAGATTC+TGG + chr6_3:1727010-1727029 Msa0933230:CDS 40.0%
CTTCTTGTCTTGTGAAGGTT+TGG - chr6_3:1727170-1727189 None:intergenic 40.0%
GACGATCAACTTAGATGTCT+CGG - chr6_3:1727239-1727258 None:intergenic 40.0%
GTCATACAGCAGAAACTTCA+AGG + chr6_3:1727256-1727275 Msa0933230:CDS 40.0%
ATCGCCTGATTTCAAGACAA+AGG + chr6_3:1727312-1727331 Msa0933230:CDS 40.0%
TTTGGAGGATGTGAACAACA+TGG + chr6_3:1727357-1727376 Msa0933230:CDS 40.0%
TATGGTTGAAGGTTCAGAGC+AGG + chr6_3:1724795-1724814 Msa0933230:CDS 45.0%
GCAGGAGAAGAATGAGCTTA+AGG + chr6_3:1724813-1724832 Msa0933230:CDS 45.0%
!! GACTGAGGTTTCGGTTTTGA+AGG + chr6_3:1724861-1724880 Msa0933230:CDS 45.0%
! TCAGGTTGTGAATGATTCCC+CGG + chr6_3:1724894-1724913 Msa0933230:CDS 45.0%
TGATTCCCCGGTGAATAATG+GGG + chr6_3:1724906-1724925 Msa0933230:CDS 45.0%
AAGACACCCCATTATTCACC+GGG - chr6_3:1724915-1724934 None:intergenic 45.0%
GAAGACACCCCATTATTCAC+CGG - chr6_3:1724916-1724935 None:intergenic 45.0%
!! GAGTAGCATTTTCGAGACTG+AGG + chr6_3:1724972-1724991 Msa0933230:CDS 45.0%
GACTGTGGAGATTCCAATTG+TGG + chr6_3:1725140-1725159 Msa0933230:CDS 45.0%
GACTGTTGAGGTTCCAATAG+TGG + chr6_3:1725236-1725255 Msa0933230:CDS 45.0%
GAATGAGAAGGATAGTGAGG+AGG + chr6_3:1725287-1725306 Msa0933230:CDS 45.0%
GATAGTGAGGAGGGAGAAAA+GGG + chr6_3:1725297-1725316 Msa0933230:CDS 45.0%
TGGGAAGATCGAGACTATTG+AGG + chr6_3:1725440-1725459 Msa0933230:CDS 45.0%
AGATTAAGAGTCATCCGTGG+TGG + chr6_3:1725559-1725578 Msa0933230:CDS 45.0%
TTATGATCCGTCTGATGCGT+CGG + chr6_3:1725593-1725612 Msa0933230:CDS 45.0%
! AAGGCTTCAATTGTGACGGA+TGG - chr6_3:1725689-1725708 None:intergenic 45.0%
GTCTGAATTCGCTCCAATGT+TGG + chr6_3:1725848-1725867 Msa0933230:CDS 45.0%
!! GGTGTTTTTGTGCCTGATAG+TGG + chr6_3:1725894-1725913 Msa0933230:CDS 45.0%
!! TAGTGGCACAGAGAGCATTT+CGG + chr6_3:1725911-1725930 Msa0933230:CDS 45.0%
!! TATTGCTAGTGTTCTGGAGC+TGG + chr6_3:1725995-1726014 Msa0933230:CDS 45.0%
! CGTTTGGGATCCTCATAACA+AGG - chr6_3:1726077-1726096 None:intergenic 45.0%
!!! GAACCTGATTTTGGGGTCAA+TGG - chr6_3:1726188-1726207 None:intergenic 45.0%
TTGACCCCAAAATCAGGTTC+AGG + chr6_3:1726188-1726207 Msa0933230:CDS 45.0%
! AAGCATCGCTGACATTATGG+GGG + chr6_3:1726241-1726260 Msa0933230:CDS 45.0%
GATACAGAGACTGTAAGAGG+TGG + chr6_3:1726422-1726441 Msa0933230:CDS 45.0%
GTGGAAAAGAAAGCTGTGAC+AGG + chr6_3:1726441-1726460 Msa0933230:CDS 45.0%
GGAAAAGAAAGCTGTGACAG+GGG + chr6_3:1726443-1726462 Msa0933230:CDS 45.0%
GGTGAGGAAAAAGAAGCTTC+TGG + chr6_3:1726482-1726501 Msa0933230:CDS 45.0%
GTAATGAGAACATCAGCGGT+GGG + chr6_3:1726504-1726523 Msa0933230:CDS 45.0%
AGAGACTTTGTGAAGGGAAG+AGG + chr6_3:1726638-1726657 Msa0933230:CDS 45.0%
TTGAAACTCGAGGAGAAAGC+AGG - chr6_3:1726670-1726689 None:intergenic 45.0%
! CAGTGAGGCATTTCAAGAGT+TGG + chr6_3:1726697-1726716 Msa0933230:CDS 45.0%
CCTTGACTTTCTCTGGATCA+AGG - chr6_3:1726772-1726791 None:intergenic 45.0%
CCTTGATCCAGAGAAAGTCA+AGG + chr6_3:1726769-1726788 Msa0933230:CDS 45.0%
GAAGGAACCTTGACTTTCTC+TGG - chr6_3:1726779-1726798 None:intergenic 45.0%
CGCTTAGTCCACAAATGTCA+AGG + chr6_3:1726831-1726850 Msa0933230:CDS 45.0%
AGTCCACAAATGTCAAGGAG+GGG + chr6_3:1726836-1726855 Msa0933230:CDS 45.0%
AATGAAGCTGAACCTGGAAC+TGG + chr6_3:1726941-1726960 Msa0933230:CDS 45.0%
TTTCTCTTCCTTCCAGTTCC+AGG - chr6_3:1726956-1726975 None:intergenic 45.0%
TGGACCAGCCAAGAAAAGAA+AGG + chr6_3:1727030-1727049 Msa0933230:CDS 45.0%
! CTCTCCTTTCTTTTCTTGGC+TGG - chr6_3:1727037-1727056 None:intergenic 45.0%
AAGGGGACCGATGAAAAATC+TGG + chr6_3:1727115-1727134 Msa0933230:CDS 45.0%
ACAGCAGAAACTTCAAGGTC+TGG + chr6_3:1727261-1727280 Msa0933230:CDS 45.0%
GAAATCAGGCGATTTGTCGT+CGG - chr6_3:1727305-1727324 None:intergenic 45.0%
AGACACCCCATTATTCACCG+GGG - chr6_3:1724914-1724933 None:intergenic 50.0%
AGTGAACGGGAAGGAGAATG+AGG + chr6_3:1725188-1725207 Msa0933230:CDS 50.0%
AACGGGAAGGAGAATGAGGA+GGG + chr6_3:1725192-1725211 Msa0933230:CDS 50.0%
GGATAGTGAGGAGGGAGAAA+AGG + chr6_3:1725296-1725315 Msa0933230:CDS 50.0%
CTCTCACTTGCCTCCACTAT+TGG - chr6_3:1725360-1725379 None:intergenic 50.0%
AATGACTGAGAAGGAGAGCG+CGG + chr6_3:1725392-1725411 Msa0933230:CDS 50.0%
! AAATGAGGTTGGAAGGGTGC+TGG + chr6_3:1725782-1725801 Msa0933230:CDS 50.0%
! GATGAGTCGTCCGTTTGTTG+TGG + chr6_3:1725812-1725831 Msa0933230:CDS 50.0%
! ATGCTCTCTGTGCCACTATC+AGG - chr6_3:1725909-1725928 None:intergenic 50.0%
TTCGGCGGTTACACTTGAAC+CGG + chr6_3:1725929-1725948 Msa0933230:CDS 50.0%
TCAAGTCCGAGAACCCGTTT+GGG - chr6_3:1726092-1726111 None:intergenic 50.0%
TTCAAGTCCGAGAACCCGTT+TGG - chr6_3:1726093-1726112 None:intergenic 50.0%
! CAGTTGAAGCACCATCCCAA+GGG + chr6_3:1726135-1726154 Msa0933230:CDS 50.0%
CTGCCATTGACCCCAAAATC+AGG + chr6_3:1726182-1726201 Msa0933230:CDS 50.0%
CAAATCGCAGCATTCAGGTG+AGG + chr6_3:1726466-1726485 Msa0933230:CDS 50.0%
GGTAATGAGAACATCAGCGG+TGG + chr6_3:1726503-1726522 Msa0933230:CDS 50.0%
AGCGGAGAGGAAAACGATGA+AGG + chr6_3:1726527-1726546 Msa0933230:CDS 50.0%
GCGGAGAGGAAAACGATGAA+GGG + chr6_3:1726528-1726547 Msa0933230:CDS 50.0%
! TTTGTGAAGGGAAGAGGTGC+TGG + chr6_3:1726644-1726663 Msa0933230:CDS 50.0%
AAGCTGAACCTGGAACTGGA+AGG + chr6_3:1726945-1726964 Msa0933230:CDS 50.0%
GGGACCGATGAAAAATCTGG+AGG + chr6_3:1727118-1727137 Msa0933230:CDS 50.0%
CAAGACAAAGGTAGAGAGCG+AGG + chr6_3:1727324-1727343 Msa0933230:CDS 50.0%
AAGGTAGAGAGCGAGGTGAA+AGG + chr6_3:1727331-1727350 Msa0933230:CDS 50.0%
! GAGCGAGGTGAAAGGTCTTT+TGG + chr6_3:1727339-1727358 Msa0933230:CDS 50.0%
! CGAGGTGAAAGGTCTTTTGG+AGG + chr6_3:1727342-1727361 Msa0933230:CDS 50.0%
GAACGGGAAGGAGAATGAGG+AGG + chr6_3:1725191-1725210 Msa0933230:CDS 55.0%
ACGGGAAGGAGAATGAGGAG+GGG + chr6_3:1725193-1725212 Msa0933230:CDS 55.0%
AGTGGAGGCTAGTGAGAGCA+TGG + chr6_3:1725470-1725489 Msa0933230:CDS 55.0%
GACGGATCATAAACCCGACC+TGG - chr6_3:1725585-1725604 None:intergenic 55.0%
GCAAGTTCCGACGCATCAGA+CGG - chr6_3:1725603-1725622 None:intergenic 55.0%
!! GAGTCGTCCGTTTGTTGTGG+CGG + chr6_3:1725815-1725834 Msa0933230:CDS 55.0%
!! AGTCGTCCGTTTGTTGTGGC+GGG + chr6_3:1725816-1725835 Msa0933230:CDS 55.0%
!! TGGCACAGAGAGCATTTCGG+CGG + chr6_3:1725914-1725933 Msa0933230:CDS 55.0%
! GAGGATCCCAAACGGGTTCT+CGG + chr6_3:1726083-1726102 Msa0933230:CDS 55.0%
! GCAGTTGAAGCACCATCCCA+AGG + chr6_3:1726134-1726153 Msa0933230:CDS 55.0%
TCTTCAAACGGCCCTTGGGA+TGG - chr6_3:1726149-1726168 None:intergenic 55.0%
ATCCCAAGGGCCGTTTGAAG+AGG + chr6_3:1726148-1726167 Msa0933230:CDS 55.0%
GTCCTCTTCAAACGGCCCTT+GGG - chr6_3:1726153-1726172 None:intergenic 55.0%
AGTCCTCTTCAAACGGCCCT+TGG - chr6_3:1726154-1726173 None:intergenic 55.0%
CATCGCTGACATTATGGGGG+AGG + chr6_3:1726244-1726263 Msa0933230:CDS 55.0%
AGGGGCAAATCGCAGCATTC+AGG + chr6_3:1726461-1726480 Msa0933230:CDS 55.0%
GTGCCCCTCCTTGACATTTG+TGG - chr6_3:1726842-1726861 None:intergenic 55.0%
GCTGGTCCAGAATCTTCGCT+AGG - chr6_3:1727019-1727038 None:intergenic 55.0%
GCTCGTGAAACCAAGACCAG+CGG + chr6_3:1727088-1727107 Msa0933230:CDS 55.0%
AACCAAGACCAGCGGCAAGA+AGG + chr6_3:1727096-1727115 Msa0933230:CDS 55.0%
ACCAAGACCAGCGGCAAGAA+GGG + chr6_3:1727097-1727116 Msa0933230:CDS 55.0%
GAGATGGTGTGGCTGGAGTT+AGG - chr6_3:1727204-1727223 None:intergenic 55.0%
TGTGACAGAGATGGTGTGGC+TGG - chr6_3:1727211-1727230 None:intergenic 55.0%
AGCCACACCATCTCTGTCAC+AGG + chr6_3:1727210-1727229 Msa0933230:CDS 55.0%
GCCACACCATCTCTGTCACA+GGG + chr6_3:1727211-1727230 Msa0933230:CDS 55.0%
ACCCTGTGACAGAGATGGTG+TGG - chr6_3:1727215-1727234 None:intergenic 55.0%
TCGGTACCCTGTGACAGAGA+TGG - chr6_3:1727220-1727239 None:intergenic 55.0%
! ACTGAGAAGGAGAGCGCGGA+AGG + chr6_3:1725396-1725415 Msa0933230:CDS 60.0%
AAGAGTCATCCGTGGTGGCC+AGG + chr6_3:1725564-1725583 Msa0933230:CDS 60.0%
TAAACCCGACCTGGCCACCA+CGG - chr6_3:1725576-1725595 None:intergenic 60.0%
!! GTCGTCCGTTTGTTGTGGCG+GGG + chr6_3:1725817-1725836 Msa0933230:CDS 60.0%
!! TCGTCCGTTTGTTGTGGCGG+GGG + chr6_3:1725818-1725837 Msa0933230:CDS 60.0%
GTCTCCCCCGCCACAACAAA+CGG - chr6_3:1725825-1725844 None:intergenic 60.0%
GAGAACATCAGCGGTGGGAG+CGG + chr6_3:1726509-1726528 Msa0933230:CDS 60.0%
CCAAGACCAGCGGCAAGAAG+GGG + chr6_3:1727098-1727117 Msa0933230:CDS 60.0%
GTCATCCGTGGTGGCCAGGT+CGG + chr6_3:1725568-1725587 Msa0933230:CDS 65.0%
TCATCCGTGGTGGCCAGGTC+GGG + chr6_3:1725569-1725588 Msa0933230:CDS 65.0%
! CCCCTTCTTGCCGCTGGTCT+TGG - chr6_3:1727101-1727120 None:intergenic 65.0%
ATCGGTCCCCTTCTTGCCGC+TGG - chr6_3:1727107-1727126 None:intergenic 65.0%
CATCAGCGGTGGGAGCGGAG+AGG + chr6_3:1726514-1726533 Msa0933230:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 1724730 1727399 1724730 ID=Msa0933230;Name=Msa0933230
chr6_3 mRNA 1724730 1727399 1724730 ID=Msa0933230-mRNA-1;Parent=Msa0933230;Name=Msa0933230-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|-1|0|1|-1|1|1|0|889
chr6_3 exon 1724730 1727399 1724730 ID=Msa0933230-mRNA-1:exon:674;Parent=Msa0933230-mRNA-1
chr6_3 CDS 1724730 1727399 1724730 ID=Msa0933230-mRNA-1:cds;Parent=Msa0933230-mRNA-1
Gene Sequence

>Msa0933230

ATGGGTGTGGTTGATACTGAATCGATGGAACCATTTGGGGTTGAAACTAGTTTAGCTGAAAATGTTATGGTTGAAGGTTCAGAGCAGGAGAAGAATGAGCTTAAGGAAGTTGTTAAGAGTAGTGTTTTCAAGACTGAGGTTTCGGTTTTGAAGGAGAATGATTCTCAGGTTGTGAATGATTCCCCGGTGAATAATGGGGTGTCTTCTGAGATGAATAATGACGGTGCTGTTGAAGTTGTTAAGAGTAGCATTTTCGAGACTGAGGTTTCGATTTTGAAGGAGAATGACTCTCAGGTTGTGACTGATTCTGAAGTGAATAATGAGGTGTCTTCTTTGTTGAAAACGGGAGAAAACGATGGAAGCGTCGTCGTTTGTGATAAGAAAGTCAAAGAAGGTGATGAAAAAATTCAGACTGTGGAGATTCCAATTGTGGAGATAAGCGAGAATGTTGATATTGAAGTGAACGGGAAGGAGAATGAGGAGGGGAAAAAAGATGAAAAAATTGCGACTGTTGAGGTTCCAATAGTGGAAACAAGTGAGAACATTGATGTTGAGATGAATGAGAAGGATAGTGAGGAGGGAGAAAAGGGTGAAAATTGTGATGGGAAGATAGAGTCTATTGAGGTACCAATAGTGGAGGCAAGTGAGAGCATCGATGTTGAAATGACTGAGAAGGAGAGCGCGGAAGGAAACAAAGATGACAATTGTGATGGGAAGATCGAGACTATTGAGGATTCAATAGTGGAGGCTAGTGAGAGCATGGATGTTGAAGTTGACGATTTGATTGATGAAAGGTGTGACTTTTCTGTTGGCGATTTTGTTTGGGGAAAGATTAAGAGTCATCCGTGGTGGCCAGGTCGGGTTTATGATCCGTCTGATGCGTCGGAACTTGCTTTAAAGCTGAAACAAAAGAATAGACTCTTGGTAGCTTACTTTGATGGAACATTTGCTTGGTGCCATCCGTCACAATTGAAGCCTTTTAAGGATAATTTTGATGATATGGTGGGACAAGGTAGTTCCAAAGCTTTCACCTATGCTGTTCAAGAAGCTGTAAATGAGGTTGGAAGGGTGCTGGTTACAAAGATGAGTCGTCCGTTTGTTGTGGCGGGGGAGACTAAGTCTGAATTCGCTCCAATGTTGGCGAAAAATTCAGGAATCAAGGAAGGTGTTTTTGTGCCTGATAGTGGCACAGAGAGCATTTCGGCGGTTACACTTGAACCGGCTGAGTTACTTTCTCAAGTGAAACAAATTGCTGAAAGTATTGATATTGCTAGTGTTCTGGAGCTGGAAATATTGAAGGCTCGGATTTCAGCTTTTTATCTCTCAAAAGGAGGATATAAGTTACCTTGTTATGAGGATCCCAAACGGGTTCTCGGACTTGAAGATAAAGATGATGTCAACAATGCAGTTGAAGCACCATCCCAAGGGCCGTTTGAAGAGGACTACTCTACACTGCCATTGACCCCAAAATCAGGTTCAGGAAGTAGACCGAACCGTAGAAGAAAGCAGAAAAGCATCGCTGACATTATGGGGGAGGAAAAAGATGTTGATGCAAAAGATAAGGAATGGGATGCAAGTGATGATGAAGTTCTGGTTGCAATTAAGTCTAAGGGTAGAAAAAAGAAAAAAGACAACGACGATGCAGGGACATCTGAACCAGTTCAGAAGAGAAAAGAGTTGCTTGCAGGTACTGATACAGAGACTGTAAGAGGTGGAAAAGAAAGCTGTGACAGGGGCAAATCGCAGCATTCAGGTGAGGAAAAAGAAGCTTCTGGTAATGAGAACATCAGCGGTGGGAGCGGAGAGGAAAACGATGAAGGGAAGCCGAAAGAACCAAATGAAAAGGGTTTTTTGTCAAGAGAAAGGAAGAAAAGCAAGTATTTGTCACCTCCTTTCACTACTTCAATCAGAGACTTTGTGAAGGGAAGAGGTGCTGGCCTGCTTTCTCCTCGAGTTTCAAAGTATAACAGTGAGGCATTTCAAGAGTTGGAACTTTCTGTTAGCTTGAATCCCCAAACACCAGATGATGAGAAAGAAACCCTTGATCCAGAGAAAGTCAAGGTTCCTTCAGCCGAAATTCTGTCAAAAATTCGCGATGCAGCGCTTAGTCCACAAATGTCAAGGAGGGGCACTTCTTCTGATAGACTTGTAGACTTTGTTTCTGTCATGAGAAGTTCATTGTATCGCGAAGGATCATTACACAAAGAATACAATGAAGCTGAACCTGGAACTGGAAGGAAGAGAAAGAAGCCAGAATCTGAGCTTGATCAATCTGATAACATATCACCTAGCGAAGATTCTGGACCAGCCAAGAAAAGAAAGGAGAGAACTACAAGCTTGTCAAAAATGAAGAAGAGAGCTCGTGAAACCAAGACCAGCGGCAAGAAGGGGACCGATGAAAAATCTGGAGGACAACACACTGAAAGATTAAAGAAGTCCAAACCTTCACAAGACAAGAAGAAAGACAAGCTCCTAACTCCAGCCACACCATCTCTGTCACAGGGTACCGAGACATCTAAGTTGATCGTCATACAGCAGAAACTTCAAGGTCTGGTCTCAATGCTCGAATCATCCGACGACAAATCGCCTGATTTCAAGACAAAGGTAGAGAGCGAGGTGAAAGGTCTTTTGGAGGATGTGAACAACATGGTTGAATCTACTTCGTCGTGA
Protein sequence

>Msa0933230

MGVVDTESMEPFGVETSLAENVMVEGSEQEKNELKEVVKSSVFKTEVSVLKENDSQVVNDSPVNNGVSSEMNNDGAVEVVKSSIFETEVSILKENDSQVVTDSEVNNEVSSLLKTGENDGSVVVCDKKVKEGDEKIQTVEIPIVEISENVDIEVNGKENEEGKKDEKIATVEVPIVETSENIDVEMNEKDSEEGEKGENCDGKIESIEVPIVEASESIDVEMTEKESAEGNKDDNCDGKIETIEDSIVEASESMDVEVDDLIDERCDFSVGDFVWGKIKSHPWWPGRVYDPSDASELALKLKQKNRLLVAYFDGTFAWCHPSQLKPFKDNFDDMVGQGSSKAFTYAVQEAVNEVGRVLVTKMSRPFVVAGETKSEFAPMLAKNSGIKEGVFVPDSGTESISAVTLEPAELLSQVKQIAESIDIASVLELEILKARISAFYLSKGGYKLPCYEDPKRVLGLEDKDDVNNAVEAPSQGPFEEDYSTLPLTPKSGSGSRPNRRRKQKSIADIMGEEKDVDAKDKEWDASDDEVLVAIKSKGRKKKKDNDDAGTSEPVQKRKELLAGTDTETVRGGKESCDRGKSQHSGEEKEASGNENISGGSGEENDEGKPKEPNEKGFLSRERKKSKYLSPPFTTSIRDFVKGRGAGLLSPRVSKYNSEAFQELELSVSLNPQTPDDEKETLDPEKVKVPSAEILSKIRDAALSPQMSRRGTSSDRLVDFVSVMRSSLYREGSLHKEYNEAEPGTGRKRKKPESELDQSDNISPSEDSGPAKKRKERTTSLSKMKKRARETKTSGKKGTDEKSGGQHTERLKKSKPSQDKKKDKLLTPATPSLSQGTETSKLIVIQQKLQGLVSMLESSDDKSPDFKTKVESEVKGLLEDVNNMVESTSS*