AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1460050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460050 MtrunA17_Chr1g0194631 98.574 631 9 0 1 631 129 759 0.0 1300
Msa1460050 MtrunA17_Chr5g0401921 48.571 665 280 13 1 627 221 861 0.0 574
Msa1460050 MtrunA17_Chr7g0235081 57.224 353 133 8 285 629 4 346 1.80e-129 384
Msa1460050 MtrunA17_Chr7g0270001 64.000 275 91 4 364 630 25 299 2.67e-115 346
Msa1460050 MtrunA17_Chr7g0270011 53.659 123 52 1 2 124 70 187 9.10e-37 140
Msa1460050 MtrunA17_Chr7g0270011 67.273 55 17 1 264 318 231 284 2.68e-15 77.4
Msa1460050 MtrunA17_Chr7g0235091 39.873 158 73 3 1 158 129 264 1.80e-27 113
Msa1460050 MtrunA17_Chr2g0297191 39.516 124 73 1 477 598 1027 1150 1.17e-22 103
Msa1460050 MtrunA17_Chr1g0147121 36.800 125 77 2 480 602 890 1014 5.60e-21 98.2
Msa1460050 MtrunA17_Chr8g0347071 37.705 122 74 2 483 602 808 929 1.28e-20 97.1
Msa1460050 MtrunA17_Chr3g0126701 37.705 122 74 2 483 602 922 1043 3.65e-20 95.5
Msa1460050 MtrunA17_Chr7g0275611 36.170 141 76 3 483 621 823 951 7.40e-20 94.4
Msa1460050 MtrunA17_Chr7g0221611 40.336 119 68 2 481 596 904 1022 3.07e-19 92.4
Msa1460050 MtrunA17_Chr1g0201621 36.923 130 80 1 471 598 73 202 1.77e-18 89.0
Msa1460050 MtrunA17_Chr1g0201311 36.923 130 80 1 471 598 73 202 3.65e-18 87.8
Msa1460050 MtrunA17_Chr2g0305371 30.921 152 95 3 447 596 306 449 1.85e-16 82.8
Msa1460050 MtrunA17_Chr1g0149581 33.333 123 76 1 482 598 1521 1643 5.38e-16 82.4
Msa1460050 MtrunA17_Chr1g0149611 34.783 115 69 1 488 596 369 483 7.47e-16 80.9
Msa1460050 MtrunA17_Chr5g0405161 45.652 92 43 3 29 119 12 97 1.98e-15 75.9
Msa1460050 MtrunA17_Chr5g0405161 51.351 74 35 1 245 318 96 168 1.70e-14 73.2
Msa1460050 MtrunA17_Chr6g0477001 32.847 137 87 3 471 602 101 237 1.75e-14 75.1
Msa1460050 MtrunA17_Chr5g0403241 29.655 145 85 2 471 598 1341 1485 1.30e-12 71.2
Msa1460050 MtrunA17_Chr3g0125251 27.692 195 103 4 406 598 1284 1442 1.30e-12 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1460050 AT4G02020.1 57.185 675 226 12 4 631 198 856 0.0 716
Msa1460050 AT4G02020.4 54.886 614 214 12 4 570 198 795 0.0 612
Msa1460050 AT4G02020.3 53.231 588 212 12 4 544 198 769 0.0 561
Msa1460050 AT4G02020.2 53.231 588 212 12 4 544 198 769 0.0 561
Msa1460050 AT2G23380.2 62.143 420 141 10 218 627 262 673 2.18e-167 494
Msa1460050 AT2G23380.2 60.000 65 26 0 57 121 30 94 3.28e-18 89.4
Msa1460050 AT2G23380.1 62.143 420 141 10 218 627 489 900 1.34e-165 497
Msa1460050 AT2G23380.1 41.322 121 64 2 1 121 208 321 9.57e-22 100
Msa1460050 AT1G02580.1 47.583 393 173 6 234 621 323 687 2.04e-120 373
Msa1460050 AT1G02580.2 43.382 272 125 5 234 503 323 567 8.07e-67 229
Msa1460050 AT5G42400.7 38.583 127 76 1 474 598 1241 1367 8.28e-23 104
Msa1460050 AT5G42400.2 38.583 127 76 1 474 598 1241 1367 8.28e-23 104
Msa1460050 AT5G42400.8 38.583 127 76 1 474 598 1241 1367 8.28e-23 104
Msa1460050 AT5G42400.5 38.583 127 76 1 474 598 1241 1367 8.28e-23 104
Msa1460050 AT5G42400.4 38.583 127 76 1 474 598 1241 1367 8.28e-23 104
Msa1460050 AT5G42400.1 38.583 127 76 1 474 598 1241 1367 8.28e-23 104
Msa1460050 AT5G42400.3 38.583 127 76 1 474 598 1241 1367 8.28e-23 104
Msa1460050 AT5G42400.6 38.583 127 76 1 474 598 1241 1367 8.28e-23 104
Msa1460050 AT2G31650.1 42.857 119 65 2 481 596 897 1015 3.91e-21 99.0
Msa1460050 AT4G27910.1 37.302 126 77 2 480 603 883 1008 5.82e-21 98.6
Msa1460050 AT4G30860.1 34.337 166 94 5 436 596 287 442 1.16e-20 96.3
Msa1460050 AT5G53430.1 36.800 125 77 2 480 602 899 1023 8.32e-20 94.7
Msa1460050 AT1G05830.2 41.176 119 67 2 481 596 918 1036 5.67e-19 92.0
Msa1460050 AT1G05830.4 41.176 119 67 2 481 596 918 1036 5.67e-19 92.0
Msa1460050 AT1G05830.1 41.176 119 67 2 481 596 918 1036 5.67e-19 92.0
Msa1460050 AT1G05830.3 41.176 119 67 2 481 596 918 1036 5.67e-19 92.0
Msa1460050 AT1G76710.4 36.154 130 81 1 471 598 78 207 2.56e-18 89.0
Msa1460050 AT1G76710.3 36.154 130 81 1 471 598 78 207 3.12e-18 88.6
Msa1460050 AT1G76710.2 36.154 130 81 1 471 598 78 207 3.29e-18 88.6
Msa1460050 AT1G76710.1 36.154 130 81 1 471 598 78 207 3.29e-18 88.6
Msa1460050 AT3G61740.2 34.677 124 78 2 483 603 840 963 7.05e-18 88.6
Msa1460050 AT3G61740.1 34.677 124 78 2 483 603 876 999 8.26e-18 88.6
Msa1460050 AT3G59960.3 32.558 129 82 3 479 602 108 236 1.02e-15 78.6
Msa1460050 AT3G59960.2 32.558 129 82 3 479 602 108 236 1.02e-15 78.6
Msa1460050 AT3G59960.4 32.558 129 82 3 479 602 108 236 1.02e-15 78.6
Msa1460050 AT3G59960.1 32.558 129 82 3 479 602 108 236 1.37e-15 79.0
Msa1460050 AT2G44150.1 32.558 129 82 3 479 602 113 241 6.54e-14 74.3
Msa1460050 AT1G77300.1 33.846 130 84 2 471 598 1015 1144 8.00e-13 72.4
Msa1460050 AT1G77300.2 33.846 130 84 2 471 598 1015 1144 1.07e-12 72.0

Find 210 sgRNAs with CRISPR-Local

Find 594 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAACATGTTTGCTTATT+TGG 0.044313 tig0040624:-9210 Msa1460050:three_prime_UTR
TGCTAATATGCCTTAAATTA+TGG 0.152574 tig0040624:-9366 Msa1460050:three_prime_UTR
AAATGACAAACTTACCTTAA+TGG 0.162835 tig0040624:+17726 None:intergenic
TTGGGGAAGTCTGATGTTTC+TGG 0.176477 tig0040624:-10674 Msa1460050:CDS
GATATATCTATTTCTCTATT+AGG 0.205796 tig0040624:+9162 None:intergenic
AAGGATTGTTCTTGTCTTAA+TGG 0.220999 tig0040624:-13161 Msa1460050:CDS
GTCTCATTTGTGACAGCTTT+TGG 0.239771 tig0040624:+15107 None:intergenic
TGTACCCTACCCATAATTTA+AGG 0.252829 tig0040624:+9356 None:intergenic
CAAGGAAGTTTAAATATTCT+TGG 0.253650 tig0040624:-13283 Msa1460050:CDS
TGGATGGGGAGCCTTCTTAA+AGG 0.301212 tig0040624:-10654 Msa1460050:intron
GAACGAGTTGATGGAATTCT+TGG 0.315350 tig0040624:-15053 Msa1460050:CDS
TGACTATTGAATTTCTAGTA+TGG 0.326503 tig0040624:-16519 Msa1460050:exon
ATAGCTAGGAACTTACTTTC+TGG 0.330151 tig0040624:-14359 Msa1460050:CDS
TTGCCCTGGTTTCTGTCTCC+TGG 0.332763 tig0040624:+17264 None:intergenic
GATTACCTGGATTTCTAAAC+TGG 0.334427 tig0040624:+16433 None:intergenic
CGAGAGAATTCAATCCATTA+AGG 0.335586 tig0040624:-17740 Msa1460050:intron
TTACAAGAATCCTGAGAATC+AGG 0.335745 tig0040624:+15200 None:intergenic
TTCACCTTTGCATAGCAGTT+GGG 0.335759 tig0040624:+10143 None:intergenic
CTGCTGGTCACCCAACAATA+TGG 0.336522 tig0040624:-13256 Msa1460050:CDS
TTGAATGAAGTTGGGATTCA+TGG 0.340600 tig0040624:+16577 None:intergenic
GGTACAGTGAGATAATAAAA+TGG 0.344180 tig0040624:-9339 Msa1460050:three_prime_UTR
ATGGTTTATAAGTTAAAATC+TGG 0.348479 tig0040624:+16596 None:intergenic
AGTATCAGAGAAAGTAATAT+TGG 0.369713 tig0040624:-16260 Msa1460050:CDS
GCTAATATGCCTTAAATTAT+GGG 0.372892 tig0040624:-9365 Msa1460050:three_prime_UTR
CACAGGTCTATTATTTCAGC+TGG 0.378581 tig0040624:-14278 Msa1460050:CDS
GAATTCTTGGTTTCTCAGAT+TGG 0.379032 tig0040624:-15040 Msa1460050:CDS
CTCAGCAACCTCGGTCTAGA+TGG 0.384033 tig0040624:+13320 None:intergenic
TTGCAACTGATTTATCTTGT+TGG 0.384750 tig0040624:+17777 None:intergenic
GCCCATGGAGGTGCTTGATC+TGG 0.396645 tig0040624:+9602 None:intergenic
CTCTTCTATGATTATTGCTA+TGG 0.397112 tig0040624:-9626 Msa1460050:CDS
CTATAGGTAATGTTGGTTGC+TGG 0.407659 tig0040624:-9701 Msa1460050:intron
AATTGCTGATTCGTCTCTCT+TGG 0.412706 tig0040624:+9562 None:intergenic
ATAGATATATCTTTCTTTGA+GGG 0.417170 tig0040624:-9150 None:intergenic
TGGAAATGTTTGGCAGAAAC+AGG 0.418632 tig0040624:-14983 Msa1460050:intron
AAGGTTCCCACATCATCATT+TGG 0.421371 tig0040624:+17802 None:intergenic
ACTCAGAAAACTTGAGTAAA+CGG 0.424610 tig0040624:-15271 Msa1460050:CDS
TAATAGCAAGAGCTTACATT+TGG 0.424724 tig0040624:-15135 Msa1460050:CDS
TTGAAGGGAGTGGAAATGTT+TGG 0.426717 tig0040624:-14993 Msa1460050:CDS
CAACAGTTTCGACAGACATC+TGG 0.427301 tig0040624:+12564 None:intergenic
TATTTCAGCTGGTTCAATCA+TGG 0.427476 tig0040624:-14267 Msa1460050:CDS
GAGTATACTGCATGCAAGAT+TGG 0.429208 tig0040624:+13210 None:intergenic
AATTTCTAGTATGGCATTTG+AGG 0.432378 tig0040624:-16510 Msa1460050:exon
TGTCTCTGTTGAGAATATAC+TGG 0.432860 tig0040624:+9459 None:intergenic
AGAGTGAAAAGAAGACAGTT+TGG 0.433099 tig0040624:-15908 Msa1460050:CDS
AATAGATATATCTTTCTTTG+AGG 0.433167 tig0040624:-9151 None:intergenic
TGGTGATCAGTGCTACCTTC+AGG 0.436446 tig0040624:-15856 Msa1460050:intron
ATGTTGTTAGCAAGTATGTT+GGG 0.438742 tig0040624:-16460 Msa1460050:CDS
CAGCTGTGGGGATGGTACAC+TGG 0.439264 tig0040624:-10882 Msa1460050:CDS
TCAATGGAAGAACGAGTTGA+TGG 0.443369 tig0040624:-15062 Msa1460050:CDS
TTCTCTAGATACATGCTCAT+AGG 0.445332 tig0040624:+16194 None:intergenic
CTTAATGGATTGAATTCTCT+CGG 0.445675 tig0040624:+17741 None:intergenic
AAGATCGCTTCCTGATTCTC+AGG 0.449551 tig0040624:-15210 Msa1460050:CDS
CATTGGCCATGGCTCATCAA+TGG 0.453407 tig0040624:+9510 None:intergenic
CACAATGGCAACCTCTGAAC+CGG 0.454848 tig0040624:+12646 None:intergenic
ATTCACCTTTGCATAGCAGT+TGG 0.455961 tig0040624:+10142 None:intergenic
GCTGAACGTTTGAATGAAGT+TGG 0.460006 tig0040624:+16568 None:intergenic
GTTCGAAGAGCTGCAAGAAC+CGG 0.461634 tig0040624:-12665 Msa1460050:CDS
ACTGCCAGGTTCTTCTGCAC+TGG 0.463190 tig0040624:+15355 None:intergenic
GACAAACTCGTGACATCTCA+TGG 0.464677 tig0040624:-9440 Msa1460050:three_prime_UTR
TCGTCTCTCTTGGAACCCTC+AGG 0.464748 tig0040624:+9572 None:intergenic
AGAGAAAGAGTTATACTTGA+AGG 0.465034 tig0040624:-15009 Msa1460050:CDS
TACTAACTTACCACAAAATA+CGG 0.467763 tig0040624:+16844 None:intergenic
ATTAATCATAACCTTTAAGA+AGG 0.469624 tig0040624:+10643 None:intergenic
TGGATTGAATTCTCTCGGCC+TGG 0.469701 tig0040624:+17746 None:intergenic
ACCGGCATCAATGTGTTCCT+TGG 0.472051 tig0040624:+9655 None:intergenic
AAATATTCTTGGAAGTCTGC+TGG 0.473416 tig0040624:-13272 Msa1460050:CDS
TTGAGCAACTGCCACTGAAA+AGG 0.473535 tig0040624:-9410 Msa1460050:three_prime_UTR
ATTGGCCATGGCTCATCAAT+GGG 0.475159 tig0040624:+9511 None:intergenic
GAAGTCTGATGTTTCTGGAT+GGG 0.479401 tig0040624:-10669 Msa1460050:CDS
CTGAACGTTTGAATGAAGTT+GGG 0.482197 tig0040624:+16569 None:intergenic
GTACAGTGAGATAATAAAAT+GGG 0.484464 tig0040624:-9338 Msa1460050:three_prime_UTR
AGCCTCAAGTTTGTACAAGC+TGG 0.487231 tig0040624:+9486 None:intergenic
GAGCCACATCGGCGTGGAGA+AGG 0.489074 tig0040624:-10857 Msa1460050:CDS
GATTACCACCATATACATCT+TGG 0.489282 tig0040624:-17194 Msa1460050:five_prime_UTR
TCGACTTCTACATTGACTCT+TGG 0.492456 tig0040624:+12623 None:intergenic
TCTGTCGAAACTGTTGGGTT+AGG 0.492462 tig0040624:-12557 Msa1460050:intron
GTTCTTGATGCTTATCGTAA+AGG 0.493028 tig0040624:-10200 Msa1460050:CDS
AAGTCTGATGTTTCTGGATG+GGG 0.494803 tig0040624:-10668 Msa1460050:CDS
GCTGACGATCAATCAGTTGT+TGG 0.496379 tig0040624:-16981 Msa1460050:five_prime_UTR
GGGCACCAGTTTAGAAATCC+AGG 0.497692 tig0040624:-16438 Msa1460050:intron
TCACCTTTGCATAGCAGTTG+GGG 0.500009 tig0040624:+10144 None:intergenic
AGAAAGTAATATTGGTAGGT+TGG 0.500552 tig0040624:-16252 Msa1460050:CDS
AATGTTGTTAGCAAGTATGT+TGG 0.504453 tig0040624:-16461 Msa1460050:CDS
AGATGTCTGTCGAAACTGTT+GGG 0.506928 tig0040624:-12562 Msa1460050:CDS
AGCAGTTGGGGTTTGATGAG+TGG 0.507871 tig0040624:+10156 None:intergenic
CCATGGCTCATCAATGGGAT+TGG 0.508976 tig0040624:+9516 None:intergenic
GACGACAGAAAAGGTTATCA+AGG 0.510059 tig0040624:+16147 None:intergenic
AGAGTTATACTTGAAGGGAG+TGG 0.511021 tig0040624:-15003 Msa1460050:CDS
GACCAGCATCCTAAAAGCTC+AGG 0.512493 tig0040624:-16230 Msa1460050:CDS
AGCAAGAGCTTACATTTGGA+TGG 0.514477 tig0040624:-15131 Msa1460050:CDS
GTCCAGATCAAGCACCTCCA+TGG 0.515220 tig0040624:-9604 Msa1460050:CDS
TTCCTTACGGGATATATCAA+AGG 0.515656 tig0040624:+16000 None:intergenic
GATCTGTGTTTCAATTATTG+TGG 0.520115 tig0040624:-16765 Msa1460050:five_prime_UTR
CCAGGCACCGACGACAGAAA+AGG 0.520888 tig0040624:+16138 None:intergenic
CCTGCTCATTCAAATCGAAA+AGG 0.520942 tig0040624:+10450 None:intergenic
TTTCTTATCCCGAAAAGACC+CGG 0.523094 tig0040624:+15418 None:intergenic
GAGTCATATAGATGCTCTGT+TGG 0.524097 tig0040624:-16696 Msa1460050:five_prime_UTR
GGAAGTCTGATGTTTCTGGA+TGG 0.525818 tig0040624:-10670 Msa1460050:CDS
TGTTTCTTTGCTCTACCTTG+TGG 0.528560 tig0040624:+9539 None:intergenic
ATGTTTGTAGAATAATGTGC+TGG 0.529641 tig0040624:+9224 None:intergenic
GATTGTTCTTGTCTTAATGG+TGG 0.531062 tig0040624:-13158 Msa1460050:CDS
CTGATTTATCTTGTTGGACA+AGG 0.531637 tig0040624:+17783 None:intergenic
AGCTGAAATAATAGACCTGT+GGG 0.532398 tig0040624:+14280 None:intergenic
AAGCATCAAGATTCCACGTA+TGG 0.533307 tig0040624:-17220 Msa1460050:five_prime_UTR
CCATGACAATCAATTCTTGT+CGG 0.533836 tig0040624:+15317 None:intergenic
TCGGTCTAGATGGCATGTCT+TGG 0.533864 tig0040624:+13330 None:intergenic
TAATGTGCTGGGCATCCAAA+AGG 0.535112 tig0040624:+9236 None:intergenic
TCTGCAGTTGCCTCATAGCT+AGG 0.536215 tig0040624:-14373 Msa1460050:intron
CCATCCAGTGCAGAAGAACC+TGG 0.536754 tig0040624:-15359 Msa1460050:CDS
AAGTATAACTCTTTCTCTAG+AGG 0.540229 tig0040624:+15014 None:intergenic
TGAGGAACACGGGTTAAATG+AGG 0.542454 tig0040624:-16492 Msa1460050:CDS
TTCTGGTTCGAAGACTTGCA+TGG 0.543056 tig0040624:-14342 Msa1460050:CDS
CCAGGTTCTTCTGCACTGGA+TGG 0.543278 tig0040624:+15359 None:intergenic
GAGAAAGAGTTATACTTGAA+GGG 0.544561 tig0040624:-15008 Msa1460050:CDS
TCACGCCCAGCAGCAAAACA+TGG 0.547646 tig0040624:+12594 None:intergenic
AGTGTAGTACTCTGACTGCC+AGG 0.547776 tig0040624:+15341 None:intergenic
CCCTCAGGTTTACGAGCCCA+TGG 0.549721 tig0040624:+9587 None:intergenic
ATATGCCTTAAATTATGGGT+AGG 0.550596 tig0040624:-9361 Msa1460050:three_prime_UTR
TCAGAGAAAGTAATATTGGT+AGG 0.550783 tig0040624:-16256 Msa1460050:CDS
TACATTGACTCTTGGCACAA+TGG 0.551079 tig0040624:+12631 None:intergenic
TACAAGCTGGACATTGGCCA+TGG 0.552644 tig0040624:+9499 None:intergenic
GTTCACCCGTGTACTCTCCT+AGG 0.552754 tig0040624:+10534 None:intergenic
TATTAAAAGTTGTGTGGTCA+TGG 0.554226 tig0040624:+16619 None:intergenic
CAGATGTCTGTCGAAACTGT+TGG 0.555785 tig0040624:-12563 Msa1460050:CDS
TATGCCTTAAATTATGGGTA+GGG 0.557311 tig0040624:-9360 Msa1460050:three_prime_UTR
AGCTGTGGGGATGGTACACT+GGG 0.558478 tig0040624:-10881 Msa1460050:CDS
ATGACATGTCTTGATTGCCC+TGG 0.559314 tig0040624:+17250 None:intergenic
ATCATAGAAGAGCTCCTCAC+CGG 0.561900 tig0040624:+9637 None:intergenic
TAATTGAAACACAGATCGAT+TGG 0.565905 tig0040624:+16771 None:intergenic
ATACAAGTCTTATTTCTCAA+AGG 0.566304 tig0040624:+16648 None:intergenic
TTCTTATCCCGAAAAGACCC+GGG 0.566631 tig0040624:+15419 None:intergenic
GGGTCCAGGAGACAGAAACC+AGG 0.568933 tig0040624:-17268 Msa1460050:five_prime_UTR
GCCAAGGAACACATTGATGC+CGG 0.569010 tig0040624:-9656 Msa1460050:CDS
ACTGCTGCTATAGGTAATGT+TGG 0.569757 tig0040624:-9708 Msa1460050:intron
AGTTTGTACAAGCTGGACAT+TGG 0.570669 tig0040624:+9493 None:intergenic
TCAGTTGCAAAAGCAAATCC+AGG 0.571291 tig0040624:-17764 Msa1460050:five_prime_UTR
ACGCATCAGGAATCAGAGAA+TGG 0.572672 tig0040624:-17003 Msa1460050:intron
CCGACAAGAATTGATTGTCA+TGG 0.573856 tig0040624:-15317 Msa1460050:CDS
AAAGTAAGTTCCTAGCTATG+AGG 0.582475 tig0040624:+14363 None:intergenic
AGAGCCGCCAAATGATGATG+TGG 0.582841 tig0040624:-17809 Msa1460050:five_prime_UTR
AGCTGCAAGAACCGGTTCAG+AGG 0.582865 tig0040624:-12657 Msa1460050:CDS
GTTGCTGGAGATCATCGAGT+TGG 0.583554 tig0040624:-9686 Msa1460050:CDS
CACATTGATTGACACCCACA+TGG 0.585645 tig0040624:+13188 None:intergenic
GTCCAGCTTGTACAAACTTG+AGG 0.588363 tig0040624:-9488 Msa1460050:three_prime_UTR
ACAATTGTAGAGGAGACAGA+TGG 0.588503 tig0040624:-15392 Msa1460050:CDS
TCCAGATCAAGCACCTCCAT+GGG 0.593087 tig0040624:-9603 Msa1460050:CDS
ATGCTCTGTTGGAGCAAACA+CGG 0.593799 tig0040624:-16685 Msa1460050:five_prime_UTR
TGACCTTCTCCACGCCGATG+TGG 0.594534 tig0040624:+10854 None:intergenic
CACAGAGAAGCTGATAAGCG+TGG 0.596923 tig0040624:-10503 Msa1460050:CDS
TGAGTCACATTGTGCCGTGT+CGG 0.596974 tig0040624:+15232 None:intergenic
TCTTTGTACAGCTGTGGGGA+TGG 0.597302 tig0040624:-10890 Msa1460050:intron
AATCAGTTGTTGGAAGAAGA+CGG 0.597314 tig0040624:-16971 Msa1460050:five_prime_UTR
CCAATCCCATTGATGAGCCA+TGG 0.597523 tig0040624:-9516 Msa1460050:exon
TAAGAAAACTACAATTGTAG+AGG 0.600144 tig0040624:-15402 Msa1460050:CDS
CTAGAAATTAGCCTAGCAGT+TGG 0.603863 tig0040624:-9279 Msa1460050:three_prime_UTR
CACGCCCAGCAGCAAAACAT+GGG 0.606423 tig0040624:+12595 None:intergenic
ATATCTAGTTATATGCATGA+TGG 0.607787 tig0040624:-14317 Msa1460050:CDS
GTTCCCACATCATCATTTGG+CGG 0.610279 tig0040624:+17805 None:intergenic
AAAATTTGACACAGAGTGCA+CGG 0.611174 tig0040624:-14234 Msa1460050:intron
ATCTGGTATTAAAAGTTGTG+TGG 0.612419 tig0040624:+16613 None:intergenic
TTTCAAAAGATTCAACTCCC+GGG 0.612464 tig0040624:-15436 Msa1460050:CDS
GGAACACGGGTTAAATGAGG+AGG 0.618859 tig0040624:-16489 Msa1460050:CDS
ATATGGAAAAGAATTGCTGA+TGG 0.619252 tig0040624:-13239 Msa1460050:CDS
GAGGCATGTCAATTCCCCAC+AGG 0.619873 tig0040624:-14295 Msa1460050:CDS
AGTCTTATTTCTCAAAGGCG+TGG 0.620445 tig0040624:+16653 None:intergenic
CAGCTGAAATAATAGACCTG+TGG 0.621680 tig0040624:+14279 None:intergenic
AGTATGGCATTTGAGGAACA+CGG 0.622172 tig0040624:-16503 Msa1460050:CDS
ACAGAGAAGCTGATAAGCGT+GGG 0.622981 tig0040624:-10502 Msa1460050:CDS
TCCATGGGCTCGTAAACCTG+AGG 0.626427 tig0040624:-9588 Msa1460050:CDS
AATATCCAAGATGTATATGG+TGG 0.626743 tig0040624:+17189 None:intergenic
AAACCCCAACTGCTATGCAA+AGG 0.629398 tig0040624:-10147 Msa1460050:intron
TACTCAGGATACCAACTGCT+AGG 0.629686 tig0040624:+9268 None:intergenic
CCATGGGCTCGTAAACCTGA+GGG 0.632587 tig0040624:-9587 Msa1460050:CDS
TCGAGTTGGCATATTCGCCA+AGG 0.633128 tig0040624:-9672 Msa1460050:CDS
GAGCCGCCAAATGATGATGT+GGG 0.634443 tig0040624:-17808 Msa1460050:five_prime_UTR
GGGAATCTAATGCATCACTC+AGG 0.636717 tig0040624:+16168 None:intergenic
GGTTCAATCATGGACGACAA+AGG 0.638496 tig0040624:-14257 Msa1460050:CDS
TTATGATCAACGTGGAAGTG+AGG 0.638890 tig0040624:-16943 Msa1460050:five_prime_UTR
CAATTGTAGAGGAGACAGAT+GGG 0.639184 tig0040624:-15391 Msa1460050:CDS
ACAGTTTGGTCTGAGCCTGT+AGG 0.639905 tig0040624:-15894 Msa1460050:CDS
GGTGGTAATCTTTCCATACG+TGG 0.640705 tig0040624:+17207 None:intergenic
TGATTACCTAGGAGAGTACA+CGG 0.641342 tig0040624:-10540 Msa1460050:CDS
ACGACAGAAAAGGTTATCAA+GGG 0.642705 tig0040624:+16148 None:intergenic
TCTAGTTATATGCATGATGG+AGG 0.645067 tig0040624:-14314 Msa1460050:CDS
ACAAACTCGTGACATCTCAT+GGG 0.647106 tig0040624:-9439 Msa1460050:three_prime_UTR
GTATGGCATTTGAGGAACAC+GGG 0.649134 tig0040624:-16502 Msa1460050:CDS
TGTTGTTAGCAAGTATGTTG+GGG 0.651009 tig0040624:-16459 Msa1460050:CDS
GGAACACATTGATGCCGGTG+AGG 0.653810 tig0040624:-9651 Msa1460050:CDS
CTGGGAGAGCCACATCGGCG+TGG 0.657062 tig0040624:-10863 Msa1460050:CDS
GCATGCAGTATACTCCATGT+GGG 0.660903 tig0040624:-13202 Msa1460050:CDS
GTGTCAATCAATGTGTGGAA+AGG 0.662829 tig0040624:-13180 Msa1460050:CDS
GGTCCAGGAGACAGAAACCA+GGG 0.668116 tig0040624:-17267 Msa1460050:five_prime_UTR
GACGAATCAGCAATTCCACA+AGG 0.669739 tig0040624:-9554 Msa1460050:CDS
TGCATGCAGTATACTCCATG+TGG 0.671233 tig0040624:-13203 Msa1460050:CDS
TGTTTGTAGAATAATGTGCT+GGG 0.671986 tig0040624:+9225 None:intergenic
GTTGTTAGCAAGTATGTTGG+GGG 0.673475 tig0040624:-16458 Msa1460050:CDS
ATTGATATGCAGTGACAGTG+AGG 0.679098 tig0040624:-16919 Msa1460050:five_prime_UTR
ACACTCTTTGTACAGCTGTG+GGG 0.688643 tig0040624:-10894 Msa1460050:intron
CGGATCTATTATGATCAACG+TGG 0.691963 tig0040624:-16951 Msa1460050:five_prime_UTR
TGTGGGTGTCAATCAATGTG+TGG 0.694307 tig0040624:-13185 Msa1460050:CDS
AGGTAGCACTGATCACCACA+TGG 0.697472 tig0040624:+15861 None:intergenic
GTACACTGGGAGAGCCACAT+CGG 0.707893 tig0040624:-10868 Msa1460050:CDS
AGTCACAAATCAGTCCGACA+CGG 0.716243 tig0040624:-15246 Msa1460050:CDS
GAAGAATTAACAGAACCTGA+CGG 0.721323 tig0040624:-16897 Msa1460050:five_prime_UTR
AAGACATGCCATCTAGACCG+AGG 0.737982 tig0040624:-13328 Msa1460050:CDS
CGGCGTGGAGAAGGTCAATG+CGG 0.745375 tig0040624:-10848 Msa1460050:CDS
TCAGGTTTACGAGCCCATGG+AGG 0.763936 tig0040624:+9590 None:intergenic
GATTACCTAGGAGAGTACAC+GGG 0.774788 tig0040624:-10539 Msa1460050:CDS
GCTGAAATAATAGACCTGTG+GGG 0.791200 tig0040624:+14281 None:intergenic
GTAGGTGATAGAAAACCATG+TGG 0.821461 tig0040624:-15876 Msa1460050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTGTTAGAAAATTA+AGG - tig0040624:13985-14004 Msa1460050:intron 10.0%
!! TTCCATATTTAATTAAAATT+TGG - tig0040624:14749-14768 Msa1460050:intron 10.0%
!!! GATATTTTGTTTTGTAATAT+TGG - tig0040624:9158-9177 Msa1460050:three_prime_UTR 15.0%
!!! ATTAAGTTGAAAATAACATA+GGG + tig0040624:11026-11045 None:intergenic 15.0%
!!! TGAAGTATTTTTTATATTTG+AGG - tig0040624:11183-11202 Msa1460050:intron 15.0%
!!! TTTTTCTGTTATTTTCTTTT+GGG - tig0040624:12849-12868 Msa1460050:intron 15.0%
!!! TTTTCGTACATAATAAAATA+TGG + tig0040624:12916-12935 None:intergenic 15.0%
!!! ATATTTTATTATGTACGAAA+AGG - tig0040624:12915-12934 Msa1460050:intron 15.0%
!!! AATTTTATTTAATGGAAAAC+TGG - tig0040624:13040-13059 Msa1460050:intron 15.0%
!! TATTTAGTTGCATAATAAAA+AGG - tig0040624:13373-13392 Msa1460050:intron 15.0%
!! ATTTAGTTGCATAATAAAAA+GGG - tig0040624:13374-13393 Msa1460050:intron 15.0%
!! TATAGAACATTATTATATCA+TGG - tig0040624:13548-13567 Msa1460050:intron 15.0%
!! TAATCTTAAAAGAAAAAGAT+AGG + tig0040624:14695-14714 None:intergenic 15.0%
!!! CTCCAAATTTTAATTAAATA+TGG + tig0040624:14754-14773 None:intergenic 15.0%
!!! TATAAATATGCTATTTGAAA+GGG + tig0040624:15692-15711 None:intergenic 15.0%
!!! TTATAAATATGCTATTTGAA+AGG + tig0040624:15693-15712 None:intergenic 15.0%
!!! AATCCTAATTATTTTTCTCT+AGG - tig0040624:9544-9563 Msa1460050:CDS 20.0%
!! TTTCCTAGAGAAAAATAATT+AGG + tig0040624:9550-9569 None:intergenic 20.0%
!! AAACCATAGAATTTACATAA+AGG + tig0040624:9701-9720 None:intergenic 20.0%
!! AAAAATATCCAAGATGTATA+TGG + tig0040624:9812-9831 None:intergenic 20.0%
!!! ATATACATCTTGGATATTTT+TGG - tig0040624:9811-9830 Msa1460050:intron 20.0%
!!! ATCCATTTTATAAGAGAAAA+TGG - tig0040624:9890-9909 Msa1460050:intron 20.0%
!!! TCCATTTTATAAGAGAAAAT+GGG - tig0040624:9891-9910 Msa1460050:intron 20.0%
!! ATGGTTTATAAGTTAAAATC+TGG + tig0040624:10402-10421 None:intergenic 20.0%
!!! GATTAAGTTGAAAATAACAT+AGG + tig0040624:11027-11046 None:intergenic 20.0%
!!! AGTATTTTTTATATTTGAGG+TGG - tig0040624:11186-11205 Msa1460050:intron 20.0%
!!! GTATTTTTTATATTTGAGGT+GGG - tig0040624:11187-11206 Msa1460050:intron 20.0%
!! GAACCAATATACAATATAAA+TGG - tig0040624:11302-11321 Msa1460050:intron 20.0%
!! TATCTTCTGTTTATTAAAGT+TGG - tig0040624:11334-11353 Msa1460050:intron 20.0%
!! TTCCTTCTTATATATTTGAT+AGG - tig0040624:11472-11491 Msa1460050:intron 20.0%
!! TTCCTATCAAATATATAAGA+AGG + tig0040624:11477-11496 None:intergenic 20.0%
!! TAAAAATTCGTTGAATTCAA+TGG - tig0040624:11917-11936 Msa1460050:intron 20.0%
!!! CTTTTTATTTTGCTTTGTAT+TGG - tig0040624:12326-12345 Msa1460050:intron 20.0%
!! TTGAATGCATGAATAATTAT+GGG - tig0040624:12421-12440 Msa1460050:intron 20.0%
!!! GTTTTTCTGTTATTTTCTTT+TGG - tig0040624:12848-12867 Msa1460050:intron 20.0%
!!! TTTTCTGTTATTTTCTTTTG+GGG - tig0040624:12850-12869 Msa1460050:intron 20.0%
!!! AGATATATTGTTATTATGCT+TGG - tig0040624:13008-13027 Msa1460050:intron 20.0%
!!! GATATATTGTTATTATGCTT+GGG - tig0040624:13009-13028 Msa1460050:intron 20.0%
!!! ATGGGAACAATTTTATTTAA+TGG - tig0040624:13032-13051 Msa1460050:intron 20.0%
!! TAAAATCAGAGATAAGATTA+CGG + tig0040624:13336-13355 None:intergenic 20.0%
!! TGCAACTAAATATAAAATGA+CGG + tig0040624:13365-13384 None:intergenic 20.0%
!! GAAAAAGAAAAAAGAAACAT+TGG + tig0040624:13446-13465 None:intergenic 20.0%
!!! AGGTTTGAAGTAAAAAAATT+TGG + tig0040624:14471-14490 None:intergenic 20.0%
!!! AATATTTTTACCCCAATAAT+TGG - tig0040624:14572-14591 Msa1460050:intron 20.0%
!! AAGTATCTTGATATATTCTT+AGG - tig0040624:15799-15818 Msa1460050:intron 20.0%
!! TAGTTATGATTTGATACAAA+AGG + tig0040624:15895-15914 None:intergenic 20.0%
!!! ATTTTTATGTCAGATTATCT+TGG - tig0040624:16302-16321 Msa1460050:intron 20.0%
!!! TTTTTATGTCAGATTATCTT+GGG - tig0040624:16303-16322 Msa1460050:intron 20.0%
!!! ATTAATCATAACCTTTAAGA+AGG + tig0040624:16355-16374 None:intergenic 20.0%
!! TTCTTAAAGGTTATGATTAA+TGG - tig0040624:16354-16373 Msa1460050:intron 20.0%
!!! AATGTTTTCACAAAGTAAAT+GGG + tig0040624:16917-16936 None:intergenic 20.0%
!!! AAATGTTTTCACAAAGTAAA+TGG + tig0040624:16918-16937 None:intergenic 20.0%
!!! AAAAGGAAATTTTTATACTC+AGG + tig0040624:17745-17764 None:intergenic 20.0%
!!! TGAGTATAAAAATTTCCTTT+TGG - tig0040624:17744-17763 Msa1460050:five_prime_UTR 20.0%
!!! GATATATCTATTTCTCTATT+AGG + tig0040624:17836-17855 None:intergenic 20.0%
!!! TTTTGTTTTGTAATATTGGC+AGG - tig0040624:9162-9181 Msa1460050:three_prime_UTR 25.0%
! AAATGACAAACTTACCTTAA+TGG + tig0040624:9272-9291 None:intergenic 25.0%
! TCATAACATAAAGTTCAACA+CGG + tig0040624:9440-9459 None:intergenic 25.0%
! TAGTGTCAATTGAAAATTCA+AGG - tig0040624:9476-9495 Msa1460050:three_prime_UTR 25.0%
! CATAGAATTTACATAAAGGA+CGG + tig0040624:9697-9716 None:intergenic 25.0%
! TATAAAATGGATAAAGCAGT+GGG + tig0040624:9882-9901 None:intergenic 25.0%
! TTATAAAATGGATAAAGCAG+TGG + tig0040624:9883-9902 None:intergenic 25.0%
!! TCCCATTTTCTCTTATAAAA+TGG + tig0040624:9895-9914 None:intergenic 25.0%
! TACTAACTTACCACAAAATA+CGG + tig0040624:10154-10173 None:intergenic 25.0%
!!! ATACAAGTCTTATTTCTCAA+AGG + tig0040624:10350-10369 None:intergenic 25.0%
!!! TGACTATTGAATTTCTAGTA+TGG - tig0040624:10476-10495 Msa1460050:CDS 25.0%
! AAAAACAATATATTGCACCA+TGG - tig0040624:10639-10658 Msa1460050:intron 25.0%
! ATTTCTCGAAGAAATGAAAA+TGG + tig0040624:10683-10702 None:intergenic 25.0%
! ATTGCTTTCATAAAAAACAC+AGG - tig0040624:10701-10720 Msa1460050:intron 25.0%
! AGTATCAGAGAAAGTAATAT+TGG - tig0040624:10735-10754 Msa1460050:intron 25.0%
!!! AATTTTTGGGAGATGAAAAT+GGG - tig0040624:11214-11233 Msa1460050:intron 25.0%
!! TTTAATGTTTTCATTGACGT+TGG - tig0040624:11280-11299 Msa1460050:intron 25.0%
! CCACCATTTATATTGTATAT+TGG + tig0040624:11308-11327 None:intergenic 25.0%
! CCAATATACAATATAAATGG+TGG - tig0040624:11305-11324 Msa1460050:intron 25.0%
!!! TTTCATTTTCAAGCAGTTAA+AGG - tig0040624:11524-11543 Msa1460050:intron 25.0%
! TAAGAAAACTACAATTGTAG+AGG - tig0040624:11593-11612 Msa1460050:intron 25.0%
!! TTCCCATTTTGTAAATCATA+AGG - tig0040624:12271-12290 Msa1460050:intron 25.0%
! TGCCTTATGATTTACAAAAT+GGG + tig0040624:12276-12295 None:intergenic 25.0%
! TAGGATTTATGGAGAAATAA+AGG + tig0040624:12359-12378 None:intergenic 25.0%
! TGAAATTGAAGCTAAAAAAG+AGG + tig0040624:12391-12410 None:intergenic 25.0%
! CTTGAATGCATGAATAATTA+TGG - tig0040624:12420-12439 Msa1460050:intron 25.0%
! TGAATGCATGAATAATTATG+GGG - tig0040624:12422-12441 Msa1460050:intron 25.0%
! TGAATAATTATGGGGAAAAA+AGG - tig0040624:12430-12449 Msa1460050:intron 25.0%
! ATATCTAGTTATATGCATGA+TGG - tig0040624:12678-12697 Msa1460050:intron 25.0%
!!! TTTCTGTTATTTTCTTTTGG+GGG - tig0040624:12851-12870 Msa1460050:intron 25.0%
! AAGATGAATCTGATGTAAAA+GGG + tig0040624:13178-13197 None:intergenic 25.0%
! AAAGATGAATCTGATGTAAA+AGG + tig0040624:13179-13198 None:intergenic 25.0%
! AAAATCAGAGATAAGATTAC+GGG + tig0040624:13335-13354 None:intergenic 25.0%
!!! ATAATAAAAAGGGTGTTGTT+TGG - tig0040624:13384-13403 Msa1460050:intron 25.0%
!!! TAATAAAAAGGGTGTTGTTT+GGG - tig0040624:13385-13404 Msa1460050:intron 25.0%
! CAAGGAAGTTTAAATATTCT+TGG - tig0040624:13712-13731 Msa1460050:intron 25.0%
!! CAATTCTTTTCCATATTGTT+GGG + tig0040624:13752-13771 None:intergenic 25.0%
! GCATATTTCTTAATTCTCAA+TGG - tig0040624:13943-13962 Msa1460050:intron 25.0%
! TAATAGTTCACAAATCAAGT+TGG + tig0040624:14063-14082 None:intergenic 25.0%
! GTTCAAAATCTTATCTAAAC+AGG + tig0040624:14120-14139 None:intergenic 25.0%
!!! GAAAAGAAGTATTGAATCAA+TGG + tig0040624:14189-14208 None:intergenic 25.0%
! ACACTTACATTACTTAAGTT+AGG + tig0040624:14265-14284 None:intergenic 25.0%
! GAATAATGAATTCCTAAATC+AGG + tig0040624:14546-14565 None:intergenic 25.0%
! AAAGAAAAAGATAGGCTAAT+GGG + tig0040624:14687-14706 None:intergenic 25.0%
! AAAAGAAAAAGATAGGCTAA+TGG + tig0040624:14688-14707 None:intergenic 25.0%
! TATTCATAATTAAACCCACT+TGG - tig0040624:14859-14878 Msa1460050:intron 25.0%
! ATTCATAATTAAACCCACTT+GGG - tig0040624:14860-14879 Msa1460050:intron 25.0%
! GATAACATATTGAAGTTACA+GGG + tig0040624:15056-15075 None:intergenic 25.0%
! TGATAACATATTGAAGTTAC+AGG + tig0040624:15057-15076 None:intergenic 25.0%
! TACAAAAATAGTTACAAGAC+AGG + tig0040624:15109-15128 None:intergenic 25.0%
! TAATGTAGGAAAGAGAAAAA+TGG + tig0040624:15207-15226 None:intergenic 25.0%
! AAAGATGATAGACATAATGT+AGG + tig0040624:15221-15240 None:intergenic 25.0%
!! CATTATGTCTATCATCTTTT+TGG - tig0040624:15222-15241 Msa1460050:CDS 25.0%
!!! GACTGTTTTGATCTTAATTT+CGG - tig0040624:15419-15438 Msa1460050:CDS 25.0%
! AACCATATCTAAAAGAAAAC+TGG + tig0040624:15480-15499 None:intergenic 25.0%
!! TTTTAGATATGGTTTGACAT+TGG - tig0040624:15486-15505 Msa1460050:intron 25.0%
! ATATTAAAAGTAGCTAGAGT+CGG + tig0040624:15644-15663 None:intergenic 25.0%
! AGATTATTGTTTCATGGTTA+AGG + tig0040624:15970-15989 None:intergenic 25.0%
!! TCTAACTTTTACGATTTACT+TGG - tig0040624:16027-16046 Msa1460050:CDS 25.0%
!! TTTTATGTCAGATTATCTTG+GGG - tig0040624:16304-16323 Msa1460050:intron 25.0%
!!! AGGTAATCATTTTTGTTAAC+AGG + tig0040624:16444-16463 None:intergenic 25.0%
! GTTAACAAAAATGATTACCT+AGG - tig0040624:16444-16463 Msa1460050:CDS 25.0%
! CACACTCATATAAAATACAA+GGG + tig0040624:16636-16655 None:intergenic 25.0%
! TCACACTCATATAAAATACA+AGG + tig0040624:16637-16656 None:intergenic 25.0%
!! GTTTGAAATCCAAATGTTAT+AGG + tig0040624:16729-16748 None:intergenic 25.0%
!! ATGTTTTCACAAAGTAAATG+GGG + tig0040624:16916-16935 None:intergenic 25.0%
!! GGTAAACTAACACATATTTT+AGG + tig0040624:16954-16973 None:intergenic 25.0%
!! ATTTTGCATTTCCATAAACA+AGG + tig0040624:17094-17113 None:intergenic 25.0%
!! GCAAAATAATTTTTCGCTTT+AGG - tig0040624:17107-17126 Msa1460050:intron 25.0%
!! TAGCTTTACTTGTTAACAAT+GGG + tig0040624:17143-17162 None:intergenic 25.0%
!!! TTAGCTTTACTTGTTAACAA+TGG + tig0040624:17144-17163 None:intergenic 25.0%
!!! AATGTTTTTGCAAAGTAAAC+AGG - tig0040624:17198-17217 Msa1460050:five_prime_UTR 25.0%
! TGCTAATATGCCTTAAATTA+TGG - tig0040624:17629-17648 Msa1460050:intron 25.0%
! GCTAATATGCCTTAAATTAT+GGG - tig0040624:17630-17649 Msa1460050:intron 25.0%
! GTACAGTGAGATAATAAAAT+GGG - tig0040624:17657-17676 Msa1460050:intron 25.0%
! TACAAACATGTTTGCTTATT+TGG - tig0040624:17785-17804 Msa1460050:five_prime_UTR 25.0%
! TTGCAACTGATTTATCTTGT+TGG + tig0040624:9221-9240 None:intergenic 30.0%
!! CTTAATGGATTGAATTCTCT+CGG + tig0040624:9257-9276 None:intergenic 30.0%
!! AATTTCTGTAGTTTGTTTGC+TGG - tig0040624:9301-9320 Msa1460050:three_prime_UTR 30.0%
!!! GGATGTTCTTTGTTTTTTCA+TGG - tig0040624:9326-9345 Msa1460050:three_prime_UTR 30.0%
!!! TGTTTTTTCATGGCTAATTC+TGG - tig0040624:9336-9355 Msa1460050:three_prime_UTR 30.0%
! ATCTGTTTGGTTGGTTATAT+GGG - tig0040624:9385-9404 Msa1460050:three_prime_UTR 30.0%
TTCAATTCTTTCCTCAAGAA+TGG - tig0040624:9670-9689 Msa1460050:CDS 30.0%
CGTCCTTTATGTAAATTCTA+TGG - tig0040624:9695-9714 Msa1460050:CDS 30.0%
!! TAAATTCTATGGTTTTACCC+AGG - tig0040624:9706-9725 Msa1460050:intron 30.0%
!! AAATTCTATGGTTTTACCCA+GGG - tig0040624:9707-9726 Msa1460050:intron 30.0%
AATATCCAAGATGTATATGG+TGG + tig0040624:9809-9828 None:intergenic 30.0%
TAATTGAAACACAGATCGAT+TGG + tig0040624:10227-10246 None:intergenic 30.0%
GATCTGTGTTTCAATTATTG+TGG - tig0040624:10230-10249 Msa1460050:intron 30.0%
TATTAAAAGTTGTGTGGTCA+TGG + tig0040624:10379-10398 None:intergenic 30.0%
ATCTGGTATTAAAAGTTGTG+TGG + tig0040624:10385-10404 None:intergenic 30.0%
!! AATTTCTAGTATGGCATTTG+AGG - tig0040624:10485-10504 Msa1460050:CDS 30.0%
AATGTTGTTAGCAAGTATGT+TGG - tig0040624:10534-10553 Msa1460050:CDS 30.0%
ATGTTGTTAGCAAGTATGTT+GGG - tig0040624:10535-10554 Msa1460050:CDS 30.0%
TTCTGATAAAGAAATCTCCA+TGG + tig0040624:10659-10678 None:intergenic 30.0%
TTTCATAAAAAACACAGGAG+AGG - tig0040624:10706-10725 Msa1460050:intron 30.0%
TCAGAGAAAGTAATATTGGT+AGG - tig0040624:10739-10758 Msa1460050:intron 30.0%
AGAAAGTAATATTGGTAGGT+TGG - tig0040624:10743-10762 Msa1460050:intron 30.0%
! ATGATGATTTTGTACATACC+AGG + tig0040624:10878-10897 None:intergenic 30.0%
AAACAAAGAAGAATACCTGA+AGG + tig0040624:11157-11176 None:intergenic 30.0%
!! GAATTTTTGGGAGATGAAAA+TGG - tig0040624:11213-11232 Msa1460050:intron 30.0%
GAAAAAGTGAACTTGTAACT+GGG + tig0040624:11447-11466 None:intergenic 30.0%
TGAAAAAGTGAACTTGTAAC+TGG + tig0040624:11448-11467 None:intergenic 30.0%
! TTTTCAAAAGATTCAACTCC+CGG - tig0040624:11558-11577 Msa1460050:intron 30.0%
ACTCAGAAAACTTGAGTAAA+CGG - tig0040624:11724-11743 Msa1460050:intron 30.0%
TAATAGCAAGAGCTTACATT+TGG - tig0040624:11860-11879 Msa1460050:intron 30.0%
AAGTATAACTCTTTCTCTAG+AGG + tig0040624:11984-12003 None:intergenic 30.0%
AGAGAAAGAGTTATACTTGA+AGG - tig0040624:11986-12005 Msa1460050:intron 30.0%
GAGAAAGAGTTATACTTGAA+GGG - tig0040624:11987-12006 Msa1460050:intron 30.0%
GATTATGTTGAGAAATGCTA+GGG - tig0040624:12063-12082 Msa1460050:intron 30.0%
!! AATTTAGTTTGAACTGTGTG+TGG - tig0040624:12094-12113 Msa1460050:intron 30.0%
GATTATGTTGAGAAATGCTA+GGG - tig0040624:12063-12082 Msa1460050:intron 30.0%
!! AATTTAGTTTGAACTGTGTG+TGG - tig0040624:12094-12113 Msa1460050:intron 30.0%
CTGCCTTATGATTTACAAAA+TGG + tig0040624:12277-12296 None:intergenic 30.0%
AAAAAAGAGGATGGAATTGT+AGG + tig0040624:12378-12397 None:intergenic 30.0%
ATTGAAGCTAAAAAAGAGGA+TGG + tig0040624:12387-12406 None:intergenic 30.0%
ACTCTTTGTAGTAAACTATC+TGG - tig0040624:12473-12492 Msa1460050:intron 30.0%
AAATATTGTACTCCATGTAG+AGG - tig0040624:12554-12573 Msa1460050:intron 30.0%
!! TTATTTTCTTTTGGGGGTTT+GGG - tig0040624:12857-12876 Msa1460050:intron 30.0%
! TATTGTTATTATGCTTGGGA+TGG - tig0040624:13013-13032 Msa1460050:intron 30.0%
! ATTGTTATTATGCTTGGGAT+GGG - tig0040624:13014-13033 Msa1460050:intron 30.0%
! TTTTTCTTTTTCCTTACCTC+TGG - tig0040624:13454-13473 Msa1460050:intron 30.0%
AAGAACTCATTGTACAAAAC+AGG + tig0040624:13513-13532 None:intergenic 30.0%
ATAAGTTACTAGAAGTTGAG+AGG + tig0040624:13583-13602 None:intergenic 30.0%
!! TCGTTTTGAATGTGAATGTT+TGG - tig0040624:13635-13654 Msa1460050:intron 30.0%
! GCAATTCTTTTCCATATTGT+TGG + tig0040624:13753-13772 None:intergenic 30.0%
ATATGGAAAAGAATTGCTGA+TGG - tig0040624:13756-13775 Msa1460050:intron 30.0%
AAGGATTGTTCTTGTCTTAA+TGG - tig0040624:13834-13853 Msa1460050:intron 30.0%
ACATGCTGTGAAAAATATTG+TGG - tig0040624:13861-13880 Msa1460050:intron 30.0%
CATGCTGTGAAAAATATTGT+GGG - tig0040624:13862-13881 Msa1460050:intron 30.0%
! CTTTTGTAGCAATGTAATGA+AGG - tig0040624:13912-13931 Msa1460050:intron 30.0%
GTGAACTATTATCTTGACTT+AGG - tig0040624:14072-14091 Msa1460050:intron 30.0%
GACTTAGGTTTCTATAAAAC+AGG - tig0040624:14087-14106 Msa1460050:intron 30.0%
TAATAGTTCACAAATCACGT+TGG + tig0040624:14241-14260 None:intergenic 30.0%
TCTATTACATCACCTGATTT+AGG - tig0040624:14531-14550 Msa1460050:intron 30.0%
!!! TACAGGGTTTTAGATAAAGA+GGG + tig0040624:15040-15059 None:intergenic 30.0%
!!! TTACAGGGTTTTAGATAAAG+AGG + tig0040624:15041-15060 None:intergenic 30.0%
GAATAGAGTTTCATACTTTG+TGG + tig0040624:15139-15158 None:intergenic 30.0%
TATGAAACTCTATTCAGAGT+AGG - tig0040624:15144-15163 Msa1460050:CDS 30.0%
AAATGGTTGGAATTTGAGTA+TGG + tig0040624:15190-15209 None:intergenic 30.0%
AACATGTCGAAATGATGATA+TGG + tig0040624:15273-15292 None:intergenic 30.0%
! TCTTAATTTCGGTTTTGCAT+AGG - tig0040624:15430-15449 Msa1460050:CDS 30.0%
! CACCAGTTTTCTTTTAGATA+TGG - tig0040624:15475-15494 Msa1460050:intron 30.0%
!!! GTTTGACATTGGTTTTATTC+TGG - tig0040624:15497-15516 Msa1460050:intron 30.0%
AATCAAGACAAATTGCAGTT+GGG + tig0040624:15604-15623 None:intergenic 30.0%
GTTTATTTCCCTAATCGATT+AGG - tig0040624:15826-15845 Msa1460050:intron 30.0%
CTACATATCCTAATCGATTA+GGG + tig0040624:15837-15856 None:intergenic 30.0%
ACTACATATCCTAATCGATT+AGG + tig0040624:15838-15857 None:intergenic 30.0%
TATTGTTTCATGGTTAAGGA+AGG + tig0040624:15966-15985 None:intergenic 30.0%
AAGTGGAGATTATTGTTTCA+TGG + tig0040624:15976-15995 None:intergenic 30.0%
TCGTAAAAGTTAGACAAAAG+TGG + tig0040624:16021-16040 None:intergenic 30.0%
TTTACGATTTACTTGGACTT+TGG - tig0040624:16034-16053 Msa1460050:CDS 30.0%
CAATGATTTAAGAAGGATAG+TGG + tig0040624:16063-16082 None:intergenic 30.0%
GCAATTGCAATGATTTAAGA+AGG + tig0040624:16070-16089 None:intergenic 30.0%
! ACAAAGAGTGTGATGTTTAT+AGG + tig0040624:16092-16111 None:intergenic 30.0%
! GCAATATGAGACTTCTTTTA+AGG - tig0040624:16169-16188 Msa1460050:CDS 30.0%
! GTACTCATCACTTTGATTTA+CGG + tig0040624:16250-16269 None:intergenic 30.0%
TATAGATTGACAAAACCCAA+CGG + tig0040624:16683-16702 None:intergenic 30.0%
AATCCAGAAAATCAGATTGT+TGG - tig0040624:16873-16892 Msa1460050:five_prime_UTR 30.0%
ATCCAGAAAATCAGATTGTT+GGG - tig0040624:16874-16893 Msa1460050:five_prime_UTR 30.0%
! GTTAGTTTACCTTGTTAACA+AGG - tig0040624:16963-16982 Msa1460050:five_prime_UTR 30.0%
! CTATTTTCTCCTTGTTAACA+AGG + tig0040624:16975-16994 None:intergenic 30.0%
! AGCTAAAGATGAAGCATTTA+AGG - tig0040624:17038-17057 Msa1460050:intron 30.0%
!! TTTGACGTTTTCCTTGTTTA+TGG - tig0040624:17080-17099 Msa1460050:intron 30.0%
CTCTTCTATGATTATTGCTA+TGG - tig0040624:17369-17388 Msa1460050:intron 30.0%
! AATTTCAGTTTCCTTTTCAG+TGG + tig0040624:17599-17618 None:intergenic 30.0%
ATATGCCTTAAATTATGGGT+AGG - tig0040624:17634-17653 Msa1460050:intron 30.0%
TATGCCTTAAATTATGGGTA+GGG - tig0040624:17635-17654 Msa1460050:intron 30.0%
GGTACAGTGAGATAATAAAA+TGG - tig0040624:17656-17675 Msa1460050:intron 30.0%
TGTTTGTAGAATAATGTGCT+GGG + tig0040624:17773-17792 None:intergenic 30.0%
ATGTTTGTAGAATAATGTGC+TGG + tig0040624:17774-17793 None:intergenic 30.0%
CTGATTTATCTTGTTGGACA+AGG + tig0040624:9215-9234 None:intergenic 35.0%
CGAGAGAATTCAATCCATTA+AGG - tig0040624:9255-9274 Msa1460050:three_prime_UTR 35.0%
CATAGTTGTTCTGATCTGTT+TGG - tig0040624:9372-9391 Msa1460050:three_prime_UTR 35.0%
! GATCTGTTTGGTTGGTTATA+TGG - tig0040624:9384-9403 Msa1460050:three_prime_UTR 35.0%
! TTCTCTAGGAAAAACTTCAG+AGG - tig0040624:9558-9577 Msa1460050:CDS 35.0%
GATTACCACCATATACATCT+TGG - tig0040624:9801-9820 Msa1460050:intron 35.0%
!!! CATCTTGGATATTTTTGGAC+AGG - tig0040624:9816-9835 Msa1460050:intron 35.0%
TAAAATCTTTCACACGCATC+AGG - tig0040624:9979-9998 Msa1460050:intron 35.0%
AATCAGTTGTTGGAAGAAGA+CGG - tig0040624:10024-10043 Msa1460050:intron 35.0%
GAAGAATTAACAGAACCTGA+CGG - tig0040624:10098-10117 Msa1460050:intron 35.0%
! AATTCATGTTTTTCACCGTC+AGG + tig0040624:10116-10135 None:intergenic 35.0%
TTGAATGAAGTTGGGATTCA+TGG + tig0040624:10421-10440 None:intergenic 35.0%
CTGAACGTTTGAATGAAGTT+GGG + tig0040624:10429-10448 None:intergenic 35.0%
TGTTGTTAGCAAGTATGTTG+GGG - tig0040624:10536-10555 Msa1460050:CDS 35.0%
GATTACCTGGATTTCTAAAC+TGG + tig0040624:10565-10584 None:intergenic 35.0%
ACAAGTTATTCTGGATTACC+TGG + tig0040624:10578-10597 None:intergenic 35.0%
AGGTAATCCAGAATAACTTG+TGG - tig0040624:10577-10596 Msa1460050:intron 35.0%
! GGTAATCCAGAATAACTTGT+GGG - tig0040624:10578-10597 Msa1460050:intron 35.0%
TTCTCTAGATACATGCTCAT+AGG + tig0040624:10804-10823 None:intergenic 35.0%
ACGACAGAAAAGGTTATCAA+GGG + tig0040624:10850-10869 None:intergenic 35.0%
!! TTGATAACCTTTTCTGTCGT+CGG - tig0040624:10850-10869 Msa1460050:CDS 35.0%
AACCTTTGATATATCCCGTA+AGG - tig0040624:10993-11012 Msa1460050:intron 35.0%
TTCCTTACGGGATATATCAA+AGG + tig0040624:10998-11017 None:intergenic 35.0%
AGAGTGAAAAGAAGACAGTT+TGG - tig0040624:11087-11106 Msa1460050:intron 35.0%
TTTCAAAAGATTCAACTCCC+GGG - tig0040624:11559-11578 Msa1460050:intron 35.0%
CCATGACAATCAATTCTTGT+CGG + tig0040624:11681-11700 None:intergenic 35.0%
! TACTCAAGTTTTCTGAGTCA+GGG + tig0040624:11722-11741 None:intergenic 35.0%
! TTACTCAAGTTTTCTGAGTC+AGG + tig0040624:11723-11742 None:intergenic 35.0%
TTACAAGAATCCTGAGAATC+AGG + tig0040624:11798-11817 None:intergenic 35.0%
GAATTCTTGGTTTCTCAGAT+TGG - tig0040624:11955-11974 Msa1460050:intron 35.0%
TTTCTCAACATAATCCTGTG+AGG + tig0040624:12058-12077 None:intergenic 35.0%
GGATTATGTTGAGAAATGCT+AGG - tig0040624:12062-12081 Msa1460050:intron 35.0%
GTGAACACAGAAAGATACAT+GGG + tig0040624:12156-12175 None:intergenic 35.0%
TTTCTCAACATAATCCTGTG+AGG + tig0040624:12058-12077 None:intergenic 35.0%
GGATTATGTTGAGAAATGCT+AGG - tig0040624:12062-12081 Msa1460050:intron 35.0%
GGATGGAATTGTAGGATTTA+TGG + tig0040624:12370-12389 None:intergenic 35.0%
TTCATTCGCTTATGAACCAT+TGG + tig0040624:12506-12525 None:intergenic 35.0%
AGCAAATTAAGACCTCTACA+TGG + tig0040624:12569-12588 None:intergenic 35.0%
AAAGTAAGTTCCTAGCTATG+AGG + tig0040624:12635-12654 None:intergenic 35.0%
ATAGCTAGGAACTTACTTTC+TGG - tig0040624:12636-12655 Msa1460050:CDS 35.0%
TCTAGTTATATGCATGATGG+AGG - tig0040624:12681-12700 Msa1460050:intron 35.0%
AGCTGAAATAATAGACCTGT+GGG + tig0040624:12718-12737 None:intergenic 35.0%
! TATTTCAGCTGGTTCAATCA+TGG - tig0040624:12728-12747 Msa1460050:intron 35.0%
AAAATTTGACACAGAGTGCA+CGG - tig0040624:12761-12780 Msa1460050:intron 35.0%
!! GTTATTTTCTTTTGGGGGTT+TGG - tig0040624:12856-12875 Msa1460050:intron 35.0%
!! TATTTTCTTTTGGGGGTTTG+GGG - tig0040624:12858-12877 Msa1460050:intron 35.0%
GAAATTGTATGTCAATCGTC+TGG - tig0040624:12964-12983 Msa1460050:intron 35.0%
TGAATCTGATGTAAAAGGGA+TGG + tig0040624:13174-13193 None:intergenic 35.0%
AAGTGCAGAAACTAAAGTGT+GGG + tig0040624:13231-13250 None:intergenic 35.0%
AAAGTGCAGAAACTAAAGTG+TGG + tig0040624:13232-13251 None:intergenic 35.0%
!!! CTCTGGTTTTTTGTAGCATT+GGG - tig0040624:13471-13490 Msa1460050:intron 35.0%
TGTACAAAACAGGAGGATTA+GGG + tig0040624:13503-13522 None:intergenic 35.0%
TTGTACAAAACAGGAGGATT+AGG + tig0040624:13504-13523 None:intergenic 35.0%
AACTCATTGTACAAAACAGG+AGG + tig0040624:13510-13529 None:intergenic 35.0%
TTTGTGGCAAGTAAAGAGTA+GGG + tig0040624:13613-13632 None:intergenic 35.0%
! TTTTGTGGCAAGTAAAGAGT+AGG + tig0040624:13614-13633 None:intergenic 35.0%
! CACATTCAAAACGACTTTTG+TGG + tig0040624:13629-13648 None:intergenic 35.0%
TGAGAAAAAGAGGCAAAACA+AGG - tig0040624:13694-13713 Msa1460050:intron 35.0%
AAATATTCTTGGAAGTCTGC+TGG - tig0040624:13723-13742 Msa1460050:intron 35.0%
GATTGTTCTTGTCTTAATGG+TGG - tig0040624:13837-13856 Msa1460050:intron 35.0%
TTATTCAAACGACCAACACA+CGG + tig0040624:13969-13988 None:intergenic 35.0%
ATGTAATTCAAAACCCGAAG+AGG + tig0040624:14503-14522 None:intergenic 35.0%
TAGATGCTCTCCAATTATTG+GGG + tig0040624:14585-14604 None:intergenic 35.0%
GTAGATGCTCTCCAATTATT+GGG + tig0040624:14586-14605 None:intergenic 35.0%
AGTAGATGCTCTCCAATTAT+TGG + tig0040624:14587-14606 None:intergenic 35.0%
GATAAGAAAAACCACAGGTT+TGG + tig0040624:14630-14649 None:intergenic 35.0%
ATAATTAAACCCACTTGGGT+TGG - tig0040624:14864-14883 Msa1460050:intron 35.0%
AATAGTTACAAGACAGGTCA+GGG + tig0040624:15103-15122 None:intergenic 35.0%
AAATAGTTACAAGACAGGTC+AGG + tig0040624:15104-15123 None:intergenic 35.0%
GTAGGAAAGAGAAAAATGGT+TGG + tig0040624:15203-15222 None:intergenic 35.0%
ATGTCGAAATGATGATATGG+AGG + tig0040624:15270-15289 None:intergenic 35.0%
AACAAACCAGAAAGACTACA+AGG + tig0040624:15351-15370 None:intergenic 35.0%
CAAAAAAGATCACACAACTG+TGG + tig0040624:15382-15401 None:intergenic 35.0%
!!! CACAGTTGTGTGATCTTTTT+TGG - tig0040624:15380-15399 Msa1460050:CDS 35.0%
!!! TTGTGTGATCTTTTTTGGCT+TGG - tig0040624:15385-15404 Msa1460050:CDS 35.0%
!! GTTTTGCATAGGTTTTGTCT+CGG - tig0040624:15441-15460 Msa1460050:CDS 35.0%
! TTTTTCCTCCAATTGCAGTA+TGG - tig0040624:15565-15584 Msa1460050:intron 35.0%
GAATCAAGACAAATTGCAGT+TGG + tig0040624:15605-15624 None:intergenic 35.0%
ACTACAAGATAAAGGTGAAG+TGG + tig0040624:15993-16012 None:intergenic 35.0%
! TGGTGTCAACTACAAGATAA+AGG + tig0040624:16001-16020 None:intergenic 35.0%
!!! TTCTTTTAAGGCAACAACAG+AGG - tig0040624:16181-16200 Msa1460050:CDS 35.0%
!!! TCTTTTAAGGCAACAACAGA+GGG - tig0040624:16182-16201 Msa1460050:CDS 35.0%
! ATCACTTTGATTTACGGCAA+TGG + tig0040624:16244-16263 None:intergenic 35.0%
AGAGACAAATCACATGCATT+AGG + tig0040624:16272-16291 None:intergenic 35.0%
ATACCCTCACATTTCTTTCT+TGG - tig0040624:16700-16719 Msa1460050:five_prime_UTR 35.0%
TTGCCAAGAAAGAAATGTGA+GGG + tig0040624:16706-16725 None:intergenic 35.0%
TCTTGGCAACCTATAACATT+TGG - tig0040624:16717-16736 Msa1460050:five_prime_UTR 35.0%
GATAAGCATCAAGAACATAC+TGG + tig0040624:16791-16810 None:intergenic 35.0%
GTTCTTGATGCTTATCGTAA+AGG - tig0040624:16795-16814 Msa1460050:five_prime_UTR 35.0%
! GTAAACAGGTCCTTACATTT+TGG - tig0040624:17212-17231 Msa1460050:five_prime_UTR 35.0%
GCTACAAAGTCCAAAATGTA+AGG + tig0040624:17225-17244 None:intergenic 35.0%
TGTCTCTGTTGAGAATATAC+TGG + tig0040624:17539-17558 None:intergenic 35.0%
TGTACCCTACCCATAATTTA+AGG + tig0040624:17642-17661 None:intergenic 35.0%
AAGGTTCCCACATCATCATT+TGG + tig0040624:9196-9215 None:intergenic 40.0%
TCAGTTGCAAAAGCAAATCC+AGG - tig0040624:9231-9250 Msa1460050:three_prime_UTR 40.0%
! TCATGGCTAATTCTGGAAAC+TGG - tig0040624:9343-9362 Msa1460050:three_prime_UTR 40.0%
GTTGTTCTGATCTGTTTGGT+TGG - tig0040624:9376-9395 Msa1460050:three_prime_UTR 40.0%
!! GGTTATATGGGTGTCACTTT+CGG - tig0040624:9397-9416 Msa1460050:three_prime_UTR 40.0%
TAATTGCAAGTGATCCAGCA+TGG + tig0040624:9525-9544 None:intergenic 40.0%
TATGACATTGCAGCTTCTTC+TGG + tig0040624:9586-9605 None:intergenic 40.0%
AAGCTGCAATGTCATACTTC+AGG - tig0040624:9590-9609 Msa1460050:CDS 40.0%
TAATGTCAGCAGTATCAACC+AGG - tig0040624:9615-9634 Msa1460050:CDS 40.0%
AATGTCAGCAGTATCAACCA+GGG - tig0040624:9616-9635 Msa1460050:CDS 40.0%
AAGCATCAAGATTCCACGTA+TGG - tig0040624:9775-9794 Msa1460050:intron 40.0%
CGGATCTATTATGATCAACG+TGG - tig0040624:10044-10063 Msa1460050:intron 40.0%
TTATGATCAACGTGGAAGTG+AGG - tig0040624:10052-10071 Msa1460050:intron 40.0%
ATTGATATGCAGTGACAGTG+AGG - tig0040624:10076-10095 Msa1460050:intron 40.0%
! ATGCTGAAGACCGTATTTTG+TGG - tig0040624:10141-10160 Msa1460050:intron 40.0%
GAGTCATATAGATGCTCTGT+TGG - tig0040624:10299-10318 Msa1460050:intron 40.0%
!! AGTCTTATTTCTCAAAGGCG+TGG + tig0040624:10345-10364 None:intergenic 40.0%
GCTGAACGTTTGAATGAAGT+TGG + tig0040624:10430-10449 None:intergenic 40.0%
AGTATGGCATTTGAGGAACA+CGG - tig0040624:10492-10511 Msa1460050:CDS 40.0%
GTTGTTAGCAAGTATGTTGG+GGG - tig0040624:10537-10556 Msa1460050:CDS 40.0%
GTCATTCCCACAAGTTATTC+TGG + tig0040624:10587-10606 None:intergenic 40.0%
! TCATGTTCTCCTGAGCTTTT+AGG + tig0040624:10777-10796 None:intergenic 40.0%
GACGACAGAAAAGGTTATCA+AGG + tig0040624:10851-10870 None:intergenic 40.0%
TATACCTTTCTGCTTTCCTG+CGG - tig0040624:10936-10955 Msa1460050:intron 40.0%
!! ATTTTTGACTGTCGACTGCA+TGG - tig0040624:10962-10981 Msa1460050:intron 40.0%
!! ACATAGGGCATTGTTCCTTA+CGG + tig0040624:11011-11030 None:intergenic 40.0%
! CATGGTTTTCTATCACCTAC+AGG + tig0040624:11119-11138 None:intergenic 40.0%
GTAGGTGATAGAAAACCATG+TGG - tig0040624:11119-11138 Msa1460050:intron 40.0%
ATAGTATGCACGCAGAAAAG+TGG + tig0040624:11416-11435 None:intergenic 40.0%
TTTCTTATCCCGAAAAGACC+CGG + tig0040624:11580-11599 None:intergenic 40.0%
ACAATTGTAGAGGAGACAGA+TGG - tig0040624:11603-11622 Msa1460050:intron 40.0%
CAATTGTAGAGGAGACAGAT+GGG - tig0040624:11604-11623 Msa1460050:intron 40.0%
CCGACAAGAATTGATTGTCA+TGG - tig0040624:11678-11697 Msa1460050:intron 40.0%
AGCAAGAGCTTACATTTGGA+TGG - tig0040624:11864-11883 Msa1460050:intron 40.0%
! GTCTCATTTGTGACAGCTTT+TGG + tig0040624:11891-11910 None:intergenic 40.0%
! TCAATGGAAGAACGAGTTGA+TGG - tig0040624:11933-11952 Msa1460050:intron 40.0%
!! GAACGAGTTGATGGAATTCT+TGG - tig0040624:11942-11961 Msa1460050:intron 40.0%
AGAGTTATACTTGAAGGGAG+TGG - tig0040624:11992-12011 Msa1460050:intron 40.0%
TTGAAGGGAGTGGAAATGTT+TGG - tig0040624:12002-12021 Msa1460050:intron 40.0%
TGGAAATGTTTGGCAGAAAC+AGG - tig0040624:12012-12031 Msa1460050:intron 40.0%
TATGTTGAGAAATGCTAGGG+TGG - tig0040624:12066-12085 Msa1460050:intron 40.0%
GGTGAACACAGAAAGATACA+TGG + tig0040624:12157-12176 None:intergenic 40.0%
TATGTTGAGAAATGCTAGGG+TGG - tig0040624:12066-12085 Msa1460050:intron 40.0%
! ACTATCTGGAATGTGACCAA+TGG - tig0040624:12487-12506 Msa1460050:intron 40.0%
GCTGAAATAATAGACCTGTG+GGG + tig0040624:12717-12736 None:intergenic 40.0%
CAGCTGAAATAATAGACCTG+TGG + tig0040624:12719-12738 None:intergenic 40.0%
CACAGGTCTATTATTTCAGC+TGG - tig0040624:12717-12736 Msa1460050:intron 40.0%
GAGAATGCAGGGTAAAAGAT+GGG + tig0040624:12809-12828 None:intergenic 40.0%
TGAGAATGCAGGGTAAAAGA+TGG + tig0040624:12810-12829 None:intergenic 40.0%
CAACAAGACATGAGAATGCA+GGG + tig0040624:12820-12839 None:intergenic 40.0%
ACAACAAGACATGAGAATGC+AGG + tig0040624:12821-12840 None:intergenic 40.0%
! ACTCGGTGGTATAACACATA+AGG - tig0040624:12942-12961 Msa1460050:intron 40.0%
TGTATGTCAATCGTCTGGTT+AGG - tig0040624:12969-12988 Msa1460050:intron 40.0%
AGGGATGGAGTGATTTACAT+GGG + tig0040624:13159-13178 None:intergenic 40.0%
AAGGGATGGAGTGATTTACA+TGG + tig0040624:13160-13179 None:intergenic 40.0%
GTTTCTGCACTTTCCAATCA+AGG - tig0040624:13239-13258 Msa1460050:CDS 40.0%
CCTTATGAGTGCATTCTTGA+AGG + tig0040624:13265-13284 None:intergenic 40.0%
CCTTCAAGAATGCACTCATA+AGG - tig0040624:13262-13281 Msa1460050:CDS 40.0%
GCTACAAAAAACCAGAGGTA+AGG + tig0040624:13468-13487 None:intergenic 40.0%
CCAATGCTACAAAAAACCAG+AGG + tig0040624:13473-13492 None:intergenic 40.0%
!!! CCTCTGGTTTTTTGTAGCAT+TGG - tig0040624:13470-13489 Msa1460050:intron 40.0%
TGAATGTGAATGTTTGGCCT+AGG - tig0040624:13641-13660 Msa1460050:intron 40.0%
GAGTATACTGCATGCAAGAT+TGG + tig0040624:13788-13807 None:intergenic 40.0%
GTGTCAATCAATGTGTGGAA+AGG - tig0040624:13815-13834 Msa1460050:intron 40.0%
!! TACATTGACTCTTGGCACAA+TGG + tig0040624:14367-14386 None:intergenic 40.0%
!! TCGACTTCTACATTGACTCT+TGG + tig0040624:14375-14394 None:intergenic 40.0%
AGATGTCTGTCGAAACTGTT+GGG - tig0040624:14433-14452 Msa1460050:intron 40.0%
AACCTGATGTTATGCCTCTT+CGG - tig0040624:14486-14505 Msa1460050:intron 40.0%
GATATATCATGCCAAACCTG+TGG - tig0040624:14616-14635 Msa1460050:intron 40.0%
ATTCTCCCCAGTGTCAATTT+CGG - tig0040624:14943-14962 Msa1460050:intron 40.0%
!!! GGGTTTTAGATAAAGAGGGA+AGG + tig0040624:15036-15055 None:intergenic 40.0%
TCGAAATGATGATATGGAGG+AGG + tig0040624:15267-15286 None:intergenic 40.0%
AAACCAGAAAGACTACAAGG+TGG + tig0040624:15348-15367 None:intergenic 40.0%
!! GAAGTCTGATGTTTCTGGAT+GGG - tig0040624:16326-16345 Msa1460050:intron 40.0%
!! AAGTCTGATGTTTCTGGATG+GGG - tig0040624:16327-16346 Msa1460050:intron 40.0%
! TGATTACCTAGGAGAGTACA+CGG - tig0040624:16455-16474 Msa1460050:CDS 40.0%
CCTGCTCATTCAAATCGAAA+AGG + tig0040624:16548-16567 None:intergenic 40.0%
!! CCTTTTCGATTTGAATGAGC+AGG - tig0040624:16545-16564 Msa1460050:five_prime_UTR 40.0%
TGTTTCGCTGTATTTCCGTT+GGG - tig0040624:16665-16684 Msa1460050:five_prime_UTR 40.0%
GTTGCCAAGAAAGAAATGTG+AGG + tig0040624:16707-16726 None:intergenic 40.0%
TTCACCTTTGCATAGCAGTT+GGG + tig0040624:16855-16874 None:intergenic 40.0%
ATTCACCTTTGCATAGCAGT+TGG + tig0040624:16856-16875 None:intergenic 40.0%
! CTCCCAACAATCTGATTTTC+TGG + tig0040624:16879-16898 None:intergenic 40.0%
CAGAAAATCAGATTGTTGGG+AGG - tig0040624:16877-16896 Msa1460050:five_prime_UTR 40.0%
ACTGCTGCTATAGGTAATGT+TGG - tig0040624:17287-17306 Msa1460050:intron 40.0%
! CTATAGGTAATGTTGGTTGC+TGG - tig0040624:17294-17313 Msa1460050:intron 40.0%
!! AATTGCTGATTCGTCTCTCT+TGG + tig0040624:17436-17455 None:intergenic 40.0%
TGTTTCTTTGCTCTACCTTG+TGG + tig0040624:17459-17478 None:intergenic 40.0%
AGTTTGTACAAGCTGGACAT+TGG + tig0040624:17505-17524 None:intergenic 40.0%
ACAAACTCGTGACATCTCAT+GGG - tig0040624:17556-17575 Msa1460050:intron 40.0%
! CTAGAAATTAGCCTAGCAGT+TGG - tig0040624:17716-17735 Msa1460050:intron 40.0%
GTTCCCACATCATCATTTGG+CGG + tig0040624:9193-9212 None:intergenic 45.0%
!! TCTGTAGTTTGTTTGCTGGC+AGG - tig0040624:9305-9324 Msa1460050:three_prime_UTR 45.0%
! CTTCTTTTTGCACACCATGC+TGG - tig0040624:9508-9527 Msa1460050:exon 45.0%
TAAAGGACGGTCCATTCTTG+AGG + tig0040624:9684-9703 None:intergenic 45.0%
ATGACATGTCTTGATTGCCC+TGG + tig0040624:9748-9767 None:intergenic 45.0%
GGTGGTAATCTTTCCATACG+TGG + tig0040624:9791-9810 None:intergenic 45.0%
AGCAGTGGGTAACTCAACAT+AGG + tig0040624:9868-9887 None:intergenic 45.0%
ACGCATCAGGAATCAGAGAA+TGG - tig0040624:9992-10011 Msa1460050:intron 45.0%
GCTGACGATCAATCAGTTGT+TGG - tig0040624:10014-10033 Msa1460050:intron 45.0%
ATGCTCTGTTGGAGCAAACA+CGG - tig0040624:10310-10329 Msa1460050:intron 45.0%
GTATGGCATTTGAGGAACAC+GGG - tig0040624:10493-10512 Msa1460050:CDS 45.0%
! TGAGGAACACGGGTTAAATG+AGG - tig0040624:10503-10522 Msa1460050:CDS 45.0%
GGGAATCTAATGCATCACTC+AGG + tig0040624:10830-10849 None:intergenic 45.0%
!! CATAGGGCATTGTTCCTTAC+GGG + tig0040624:11010-11029 None:intergenic 45.0%
! TTGAGGTGGGCGAGAATTTT+TGG - tig0040624:11200-11219 Msa1460050:intron 45.0%
! TGAGGTGGGCGAGAATTTTT+GGG - tig0040624:11201-11220 Msa1460050:intron 45.0%
! ATTCAACTCCCGGGTCTTTT+CGG - tig0040624:11568-11587 Msa1460050:intron 45.0%
TTCTTATCCCGAAAAGACCC+GGG + tig0040624:11579-11598 None:intergenic 45.0%
AGTCACAAATCAGTCCGACA+CGG - tig0040624:11749-11768 Msa1460050:intron 45.0%
AAGATCGCTTCCTGATTCTC+AGG - tig0040624:11785-11804 Msa1460050:intron 45.0%
TCTTTCTGTGTTCTCCTCAC+AGG - tig0040624:12041-12060 Msa1460050:intron 45.0%
TCTTTCTGTGTTCACCTCAC+AGG - tig0040624:12161-12180 Msa1460050:intron 45.0%
!! TTCTGGTTCGAAGACTTGCA+TGG - tig0040624:12653-12672 Msa1460050:CDS 45.0%
GGTTCAATCATGGACGACAA+AGG - tig0040624:12738-12757 Msa1460050:intron 45.0%
CAGGGTAAAAGATGGGAACA+GGG + tig0040624:12802-12821 None:intergenic 45.0%
ATGTACGAAAAGGCCTCACT+CGG - tig0040624:12925-12944 Msa1460050:intron 45.0%
ATGTGTTATACCACCGAGTG+AGG + tig0040624:12941-12960 None:intergenic 45.0%
GAGCATAATGCTCCAAGCTA+TGG - tig0040624:13081-13100 Msa1460050:intron 45.0%
CATAATGCTCCAAGCTATGG+AGG - tig0040624:13084-13103 Msa1460050:intron 45.0%
AAGAGAGATCCTCCATAGCT+TGG + tig0040624:13096-13115 None:intergenic 45.0%
GGGATGGAGTGATTTACATG+GGG + tig0040624:13158-13177 None:intergenic 45.0%
GCATTCTTGAAGGCCTTGAT+TGG + tig0040624:13255-13274 None:intergenic 45.0%
AGAATGCACTCATAAGGCCT+TGG - tig0040624:13268-13287 Msa1460050:CDS 45.0%
GAATGCACTCATAAGGCCTT+GGG - tig0040624:13269-13288 Msa1460050:CDS 45.0%
ACTCATAAGGCCTTGGGTTT+GGG - tig0040624:13275-13294 Msa1460050:CDS 45.0%
!! TTGGCTAATGCAGAGGCATT+TGG - tig0040624:13300-13319 Msa1460050:CDS 45.0%
!! TGGCTAATGCAGAGGCATTT+GGG - tig0040624:13301-13320 Msa1460050:CDS 45.0%
! CCTCTTTTTCTCAGCAACCT+CGG + tig0040624:13687-13706 None:intergenic 45.0%
TGCATGCAGTATACTCCATG+TGG - tig0040624:13792-13811 Msa1460050:intron 45.0%
GCATGCAGTATACTCCATGT+GGG - tig0040624:13793-13812 Msa1460050:intron 45.0%
! CACATTGATTGACACCCACA+TGG + tig0040624:13810-13829 None:intergenic 45.0%
TGTGGGTGTCAATCAATGTG+TGG - tig0040624:13810-13829 Msa1460050:intron 45.0%
AATTCTCAATGGCCGTGTGT+TGG - tig0040624:13954-13973 Msa1460050:intron 45.0%
CTCTTCGAACAACTGAAGGT+AGG + tig0040624:14320-14339 None:intergenic 45.0%
! AATGCCCATGTTTTGCTGCT+GGG - tig0040624:14396-14415 Msa1460050:intron 45.0%
CAACAGTTTCGACAGACATC+TGG + tig0040624:14434-14453 None:intergenic 45.0%
CAGATGTCTGTCGAAACTGT+TGG - tig0040624:14432-14451 Msa1460050:intron 45.0%
TCTGTCGAAACTGTTGGGTT+AGG - tig0040624:14438-14457 Msa1460050:intron 45.0%
ACCTGATGTTATGCCTCTTC+GGG - tig0040624:14487-14506 Msa1460050:intron 45.0%
GTGAGCAGCAATCTTCAATG+AGG + tig0040624:14660-14679 None:intergenic 45.0%
ATCTTCAGACCAACCCAAGT+GGG + tig0040624:14876-14895 None:intergenic 45.0%
!! TTGGGTTGGTCTGAAGATGT+TGG - tig0040624:14878-14897 Msa1460050:intron 45.0%
! TTGGTCTGAAGATGTTGGCT+TGG - tig0040624:14883-14902 Msa1460050:intron 45.0%
!! TGGTCTGAAGATGTTGGCTT+GGG - tig0040624:14884-14903 Msa1460050:intron 45.0%
!! TCAATTTCGGTGGGCTAGTT+CGG - tig0040624:14956-14975 Msa1460050:intron 45.0%
AGGAGAAGATCTAAACACGC+CGG + tig0040624:15325-15344 None:intergenic 45.0%
!! CATAGGTTTTGTCTCGGTTG+TGG - tig0040624:15447-15466 Msa1460050:CDS 45.0%
TGCAGTTGGGACAAAAGCTA+GGG + tig0040624:15591-15610 None:intergenic 45.0%
TTGCAGTTGGGACAAAAGCT+AGG + tig0040624:15592-15611 None:intergenic 45.0%
TCACACTCTTTGTACAGCTG+TGG - tig0040624:16099-16118 Msa1460050:intron 45.0%
CACACTCTTTGTACAGCTGT+GGG - tig0040624:16100-16119 Msa1460050:intron 45.0%
ACACTCTTTGTACAGCTGTG+GGG - tig0040624:16101-16120 Msa1460050:intron 45.0%
TTGGGGAAGTCTGATGTTTC+TGG - tig0040624:16321-16340 Msa1460050:intron 45.0%
!! GGAAGTCTGATGTTTCTGGA+TGG - tig0040624:16325-16344 Msa1460050:intron 45.0%
! GATTACCTAGGAGAGTACAC+GGG - tig0040624:16456-16475 Msa1460050:CDS 45.0%
ACAGAGAAGCTGATAAGCGT+GGG - tig0040624:16493-16512 Msa1460050:CDS 45.0%
CTGTTTCGCTGTATTTCCGT+TGG - tig0040624:16664-16683 Msa1460050:five_prime_UTR 45.0%
AAACCCCAACTGCTATGCAA+AGG - tig0040624:16848-16867 Msa1460050:five_prime_UTR 45.0%
TCACCTTTGCATAGCAGTTG+GGG + tig0040624:16854-16873 None:intergenic 45.0%
AAAGTGAGTGATTGCGACAG+AGG - tig0040624:17001-17020 Msa1460050:intron 45.0%
AAGTGAGTGATTGCGACAGA+GGG - tig0040624:17002-17021 Msa1460050:intron 45.0%
ATCATAGAAGAGCTCCTCAC+CGG + tig0040624:17361-17380 None:intergenic 45.0%
GACGAATCAGCAATTCCACA+AGG - tig0040624:17441-17460 Msa1460050:intron 45.0%
ATTGGCCATGGCTCATCAAT+GGG + tig0040624:17487-17506 None:intergenic 45.0%
GTCCAGCTTGTACAAACTTG+AGG - tig0040624:17507-17526 Msa1460050:intron 45.0%
AGCCTCAAGTTTGTACAAGC+TGG + tig0040624:17512-17531 None:intergenic 45.0%
GACAAACTCGTGACATCTCA+TGG - tig0040624:17555-17574 Msa1460050:intron 45.0%
TTGAGCAACTGCCACTGAAA+AGG - tig0040624:17585-17604 Msa1460050:intron 45.0%
TACTCAGGATACCAACTGCT+AGG + tig0040624:17730-17749 None:intergenic 45.0%
TAATGTGCTGGGCATCCAAA+AGG + tig0040624:17762-17781 None:intergenic 45.0%
! AGAGCCGCCAAATGATGATG+TGG - tig0040624:9186-9205 Msa1460050:three_prime_UTR 50.0%
! GAGCCGCCAAATGATGATGT+GGG - tig0040624:9187-9206 Msa1460050:three_prime_UTR 50.0%
TGGATTGAATTCTCTCGGCC+TGG + tig0040624:9252-9271 None:intergenic 50.0%
AACCAGGGACTCTTCACAGA+CGG - tig0040624:9631-9650 Msa1460050:CDS 50.0%
!! TATGGTTTTACCCAGGGTCC+AGG - tig0040624:9713-9732 Msa1460050:intron 50.0%
! GGAACACGGGTTAAATGAGG+AGG - tig0040624:10506-10525 Msa1460050:CDS 50.0%
GGGCACCAGTTTAGAAATCC+AGG - tig0040624:10557-10576 Msa1460050:CDS 50.0%
GACCAGCATCCTAAAAGCTC+AGG - tig0040624:10765-10784 Msa1460050:intron 50.0%
!!! CTCCTGAGCTTTTAGGATGC+TGG + tig0040624:10770-10789 None:intergenic 50.0%
GACAGTCAAAAATCTGCCGC+AGG + tig0040624:10955-10974 None:intergenic 50.0%
ACAGTTTGGTCTGAGCCTGT+AGG - tig0040624:11101-11120 Msa1460050:intron 50.0%
!! AGGTAGCACTGATCACCACA+TGG + tig0040624:11137-11156 None:intergenic 50.0%
TGGTGATCAGTGCTACCTTC+AGG - tig0040624:11139-11158 Msa1460050:intron 50.0%
! TTCAACTCCCGGGTCTTTTC+GGG - tig0040624:11569-11588 Msa1460050:intron 50.0%
AGTGTAGTACTCTGACTGCC+AGG + tig0040624:11657-11676 None:intergenic 50.0%
TGAGTCACATTGTGCCGTGT+CGG + tig0040624:11766-11785 None:intergenic 50.0%
TCTGCAGTTGCCTCATAGCT+AGG - tig0040624:12622-12641 Msa1460050:CDS 50.0%
GCAGGGTAAAAGATGGGAAC+AGG + tig0040624:12803-12822 None:intergenic 50.0%
CACTCATAAGGCCTTGGGTT+TGG - tig0040624:13274-13293 Msa1460050:CDS 50.0%
TTAGCCAAAGCCCAAACCCA+AGG + tig0040624:13288-13307 None:intergenic 50.0%
! TTGGGCTTTGGCTAATGCAG+AGG - tig0040624:13293-13312 Msa1460050:CDS 50.0%
AGATGGCATGTCTTGGTCCT+AGG + tig0040624:13661-13680 None:intergenic 50.0%
TCGGTCTAGATGGCATGTCT+TGG + tig0040624:13668-13687 None:intergenic 50.0%
AAGACATGCCATCTAGACCG+AGG - tig0040624:13667-13686 Msa1460050:intron 50.0%
CCGAGGTTGCTGAGAAAAAG+AGG - tig0040624:13684-13703 Msa1460050:intron 50.0%
CTGCTGGTCACCCAACAATA+TGG - tig0040624:13739-13758 Msa1460050:intron 50.0%
GCAGCTCTTCGAACAACTGA+AGG + tig0040624:14324-14343 None:intergenic 50.0%
GTTCGAAGAGCTGCAAGAAC+CGG - tig0040624:14330-14349 Msa1460050:CDS 50.0%
CACAATGGCAACCTCTGAAC+CGG + tig0040624:14352-14371 None:intergenic 50.0%
! CAATGCCCATGTTTTGCTGC+TGG - tig0040624:14395-14414 Msa1460050:intron 50.0%
! ACCCGAAGAGGCATAACATC+AGG + tig0040624:14491-14510 None:intergenic 50.0%
CATCTTCAGACCAACCCAAG+TGG + tig0040624:14877-14896 None:intergenic 50.0%
!! AAGATGTTGGCTTGGGACCT+TGG - tig0040624:14891-14910 Msa1460050:intron 50.0%
ATCGAACCAGAGACCTTGAG+AGG + tig0040624:14925-14944 None:intergenic 50.0%
TCCCCAGTGTCAATTTCGGT+GGG - tig0040624:14947-14966 Msa1460050:intron 50.0%
AGCCCACCGAAATTGACACT+GGG + tig0040624:14952-14971 None:intergenic 50.0%
TAGCCCACCGAAATTGACAC+TGG + tig0040624:14953-14972 None:intergenic 50.0%
TACAAGACAGGTCAGGGAAG+AGG + tig0040624:15097-15116 None:intergenic 50.0%
CCTCTGCCATCTTATCCTTC+CGG - tig0040624:15303-15322 Msa1460050:CDS 50.0%
AACACGCCGGAAGGATAAGA+TGG + tig0040624:15312-15331 None:intergenic 50.0%
GAAGATCTAAACACGCCGGA+AGG + tig0040624:15321-15340 None:intergenic 50.0%
CCAGAAAGACTACAAGGTGG+AGG + tig0040624:15345-15364 None:intergenic 50.0%
CCTCCACCTTGTAGTCTTTC+TGG - tig0040624:15342-15361 Msa1460050:CDS 50.0%
TAGGGCCATACTGCAATTGG+AGG + tig0040624:15573-15592 None:intergenic 50.0%
AGCTAGGGCCATACTGCAAT+TGG + tig0040624:15576-15595 None:intergenic 50.0%
AGCTAGAGTCGGATCACGTA+TGG + tig0040624:15633-15652 None:intergenic 50.0%
TCTTTGTACAGCTGTGGGGA+TGG - tig0040624:16105-16124 Msa1460050:intron 50.0%
TGGATGGGGAGCCTTCTTAA+AGG - tig0040624:16341-16360 Msa1460050:intron 50.0%
CACAGAGAAGCTGATAAGCG+TGG - tig0040624:16492-16511 Msa1460050:CDS 50.0%
AGCAGTTGGGGTTTGATGAG+TGG + tig0040624:16842-16861 None:intergenic 50.0%
CCTATAGCAGCAGTGCAAGA+GGG + tig0040624:17281-17300 None:intergenic 50.0%
ACCTATAGCAGCAGTGCAAG+AGG + tig0040624:17282-17301 None:intergenic 50.0%
GTTGCTGGAGATCATCGAGT+TGG - tig0040624:17309-17328 Msa1460050:intron 50.0%
!! TCGAGTTGGCATATTCGCCA+AGG - tig0040624:17323-17342 Msa1460050:intron 50.0%
GCCAAGGAACACATTGATGC+CGG - tig0040624:17339-17358 Msa1460050:intron 50.0%
ACCGGCATCAATGTGTTCCT+TGG + tig0040624:17343-17362 None:intergenic 50.0%
TCCAGATCAAGCACCTCCAT+GGG - tig0040624:17392-17411 Msa1460050:intron 50.0%
CCATGGCTCATCAATGGGAT+TGG + tig0040624:17482-17501 None:intergenic 50.0%
CCAATCCCATTGATGAGCCA+TGG - tig0040624:17479-17498 Msa1460050:intron 50.0%
CATTGGCCATGGCTCATCAA+TGG + tig0040624:17488-17507 None:intergenic 50.0%
TACAAGCTGGACATTGGCCA+TGG + tig0040624:17499-17518 None:intergenic 50.0%
GTTTCTGTCTCCTGGACCCT+GGG + tig0040624:9726-9745 None:intergenic 55.0%
GGTCCAGGAGACAGAAACCA+GGG - tig0040624:9728-9747 Msa1460050:intron 55.0%
TTGCCCTGGTTTCTGTCTCC+TGG + tig0040624:9734-9753 None:intergenic 55.0%
TCTGCCGCAGGAAAGCAGAA+AGG + tig0040624:10943-10962 None:intergenic 55.0%
CCAGGTTCTTCTGCACTGGA+TGG + tig0040624:11639-11658 None:intergenic 55.0%
CCATCCAGTGCAGAAGAACC+TGG - tig0040624:11636-11655 Msa1460050:intron 55.0%
ACTGCCAGGTTCTTCTGCAC+TGG + tig0040624:11643-11662 None:intergenic 55.0%
GAGGCATGTCAATTCCCCAC+AGG - tig0040624:12700-12719 Msa1460050:intron 55.0%
TACGAAAAGGCCTCACTCGG+TGG - tig0040624:12928-12947 Msa1460050:intron 55.0%
AAGGCCTTGGGTTTGGGCTT+TGG - tig0040624:13281-13300 Msa1460050:CDS 55.0%
CTCAGCAACCTCGGTCTAGA+TGG + tig0040624:13678-13697 None:intergenic 55.0%
! AGCTGCAAGAACCGGTTCAG+AGG - tig0040624:14338-14357 Msa1460050:CDS 55.0%
CACGCCCAGCAGCAAAACAT+GGG + tig0040624:14403-14422 None:intergenic 55.0%
TCACGCCCAGCAGCAAAACA+TGG + tig0040624:14404-14423 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + tig0040624:14911-14930 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - tig0040624:14909-14928 Msa1460050:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+TGG - tig0040624:14916-14935 Msa1460050:intron 55.0%
CTCCCCAGTGTCAATTTCGG+TGG - tig0040624:14946-14965 Msa1460050:intron 55.0%
GCCCACCGAAATTGACACTG+GGG + tig0040624:14951-14970 None:intergenic 55.0%
CCGGAAGGATAAGATGGCAG+AGG + tig0040624:15306-15325 None:intergenic 55.0%
AGCTGTGGGGATGGTACACT+GGG - tig0040624:16114-16133 Msa1460050:intron 55.0%
GTACACTGGGAGAGCCACAT+CGG - tig0040624:16127-16146 Msa1460050:intron 55.0%
GTTCACCCGTGTACTCTCCT+AGG + tig0040624:16464-16483 None:intergenic 55.0%
CCCTCTTGCACTGCTGCTAT+AGG - tig0040624:17278-17297 Msa1460050:intron 55.0%
GGAACACATTGATGCCGGTG+AGG - tig0040624:17344-17363 Msa1460050:intron 55.0%
GTCCAGATCAAGCACCTCCA+TGG - tig0040624:17391-17410 Msa1460050:intron 55.0%
TCAGGTTTACGAGCCCATGG+AGG + tig0040624:17408-17427 None:intergenic 55.0%
TCCATGGGCTCGTAAACCTG+AGG - tig0040624:17407-17426 Msa1460050:intron 55.0%
CCATGGGCTCGTAAACCTGA+GGG - tig0040624:17408-17427 Msa1460050:intron 55.0%
TCGTCTCTCTTGGAACCCTC+AGG + tig0040624:17426-17445 None:intergenic 55.0%
CTCCGTCTGTGAAGAGTCCC+TGG + tig0040624:9636-9655 None:intergenic 60.0%
CAGGGACTCTTCACAGACGG+AGG - tig0040624:9634-9653 Msa1460050:CDS 60.0%
GGTTTCTGTCTCCTGGACCC+TGG + tig0040624:9727-9746 None:intergenic 60.0%
GGGTCCAGGAGACAGAAACC+AGG - tig0040624:9727-9746 Msa1460050:intron 60.0%
!! CCAGGCACCGACGACAGAAA+AGG + tig0040624:10860-10879 None:intergenic 60.0%
!! CCTTTTCTGTCGTCGGTGCC+TGG - tig0040624:10857-10876 Msa1460050:CDS 60.0%
CAGCTGTGGGGATGGTACAC+TGG - tig0040624:16113-16132 Msa1460050:intron 60.0%
TGACCTTCTCCACGCCGATG+TGG + tig0040624:16144-16163 None:intergenic 60.0%
CGGCGTGGAGAAGGTCAATG+CGG - tig0040624:16147-16166 Msa1460050:CDS 60.0%
!! GCCCATGGAGGTGCTTGATC+TGG + tig0040624:17396-17415 None:intergenic 60.0%
CCCTCAGGTTTACGAGCCCA+TGG + tig0040624:17411-17430 None:intergenic 60.0%
GAGCCACATCGGCGTGGAGA+AGG - tig0040624:16138-16157 Msa1460050:intron 65.0%
CTGGGAGAGCCACATCGGCG+TGG - tig0040624:16132-16151 Msa1460050:intron 70.0%
Chromosome Type Strat End Strand Name
tig0040624 gene 9152 17865 9152 ID=Msa1460050;Name=Msa1460050
tig0040624 mRNA 9152 17865 9152 ID=Msa1460050-mRNA-1;Parent=Msa1460050;Name=Msa1460050-mRNA-1;_AED=0.12;_eAED=0.12;_QI=729|0.92|0.93|1|1|0.93|15|374|631
tig0040624 exon 9152 9717 9152 ID=Msa1460050-mRNA-1:exon:22553;Parent=Msa1460050-mRNA-1
tig0040624 exon 10148 10225 10148 ID=Msa1460050-mRNA-1:exon:22552;Parent=Msa1460050-mRNA-1
tig0040624 exon 10451 10579 10451 ID=Msa1460050-mRNA-1:exon:22551;Parent=Msa1460050-mRNA-1
tig0040624 exon 10655 10702 10655 ID=Msa1460050-mRNA-1:exon:22550;Parent=Msa1460050-mRNA-1
tig0040624 exon 10814 10901 10814 ID=Msa1460050-mRNA-1:exon:22549;Parent=Msa1460050-mRNA-1
tig0040624 exon 12558 12689 12558 ID=Msa1460050-mRNA-1:exon:22548;Parent=Msa1460050-mRNA-1
tig0040624 exon 13134 13354 13134 ID=Msa1460050-mRNA-1:exon:22547;Parent=Msa1460050-mRNA-1
tig0040624 exon 14235 14388 14235 ID=Msa1460050-mRNA-1:exon:22546;Parent=Msa1460050-mRNA-1
tig0040624 exon 14984 15477 14984 ID=Msa1460050-mRNA-1:exon:22545;Parent=Msa1460050-mRNA-1
tig0040624 exon 15857 15928 15857 ID=Msa1460050-mRNA-1:exon:22544;Parent=Msa1460050-mRNA-1
tig0040624 exon 16008 16055 16008 ID=Msa1460050-mRNA-1:exon:22543;Parent=Msa1460050-mRNA-1
tig0040624 exon 16139 16294 16139 ID=Msa1460050-mRNA-1:exon:22542;Parent=Msa1460050-mRNA-1
tig0040624 exon 16439 17016 16439 ID=Msa1460050-mRNA-1:exon:22541;Parent=Msa1460050-mRNA-1
tig0040624 exon 17180 17289 17180 ID=Msa1460050-mRNA-1:exon:22540;Parent=Msa1460050-mRNA-1
tig0040624 exon 17741 17865 17741 ID=Msa1460050-mRNA-1:exon:22539;Parent=Msa1460050-mRNA-1
tig0040624 five_prime_UTR 17741 17865 17741 ID=Msa1460050-mRNA-1:five_prime_utr;Parent=Msa1460050-mRNA-1
tig0040624 five_prime_UTR 17180 17289 17180 ID=Msa1460050-mRNA-1:five_prime_utr;Parent=Msa1460050-mRNA-1
tig0040624 five_prime_UTR 16523 17016 16523 ID=Msa1460050-mRNA-1:five_prime_utr;Parent=Msa1460050-mRNA-1
tig0040624 CDS 16439 16522 16439 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 16139 16294 16139 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 16008 16055 16008 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 15857 15928 15857 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 14984 15477 14984 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 14235 14388 14235 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 13134 13354 13134 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 12558 12689 12558 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 10814 10901 10814 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 10655 10702 10655 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 10451 10579 10451 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 10148 10225 10148 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 CDS 9526 9717 9526 ID=Msa1460050-mRNA-1:cds;Parent=Msa1460050-mRNA-1
tig0040624 three_prime_UTR 9152 9525 9152 ID=Msa1460050-mRNA-1:three_prime_utr;Parent=Msa1460050-mRNA-1
Gene Sequence

>Msa1460050

ATGGCATTTGAGGAACACGGGTTAAATGAGGAGGTTTTGAATGTTGTTAGCAAGTATGTTGGGGGCACCAGTTTAGAAATCCAGGAGAGGTACAAAAGTATCAGAGAAAGTAATATTGGTAGGTTGGACCAGCATCCTAAAAGCTCAGGAGAACATGACTTTCCTATGAGCATGTATCTAGAGAAAAACCTGAGTGATGCATTAGATTCCCTTGATAACCTTTTCTGTCGTCGGTGCCTGATTTTTGACTGTCGACTGCATGGCTGTTCTCAACCTTTGATATATCCCAGTGAAAAGAAGACAGTTTGGTCTGAGCCTGTAGGTGATAGAAAACCATGTGGTGATCAGTGCTACCTTCAGTTAAAGGTTGTTAAAAGTTTTTCAAAAGATTCAACTCCCGGGTCTTTTCGGGATAAGAAAACTACAATTGTAGAGGAGACAGATGGGATATTGTCACCATCCAGTGCAGAAGAACCTGGCAGTCAGAGTACTACACTTCCGACAAGAATTGATTGTCATGGATATATCAATTTAAATGACCCTGACTCAGAAAACTTGAGTAAACGGAAAGTCACAAATCAGTCCGACACGGCACAATGTGACTCAAGATCGCTTCCTGATTCTCAGGATTCTTGTAAAAAGCTGAAGAGAATCTCAGATGTAGTTACTGTAATTACTGATAATAGCAAGAGCTTACATTTGGATGGACCAAAAGCTGTCACAAATGAGACAGAACTTAAAAATTCGTTGAATTCAATGGAAGAACGAGTTGATGGAATTCTTGGTTTCTCAGATTGGAAACCTCTAGAGAAAGAGTTATACTTGAAGGGAGTGGAAATGTTTGGCAGAAACAGTTGCCTCATAGCTAGGAACTTACTTTCTGGTTCGAAGACTTGCATGGAAATATCTAGTTATATGCATGATGGAGGCATGTCAATTCCCCACAGGTCTATTATTTCAGCTGGTTCAATCATGGACGACAAAGGAAAATTTGACACAGAGTGCACGGACCAAGACATGCCATCTAGACCGAGGTTGCTGAGAAAAAGAGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGTCTGCTGGTCACCCAACAATATGGAAAAGAATTGCTGATGGCAAAAACCAATCTTGCATGCAGTATACTCCATGTGGGTGTCAATCAATGTGTGGAAAGGATTGTTCTTGTCTTAATGGTGGAACATGCTGTGAAAAATATTGTGGTTGTTCGAAGAGCTGCAAGAACCGGTTCAGAGGTTGCCATTGTGCCAAGAGTCAATGTAGAAGTCGACAATGCCCATGTTTTGCTGCTGGGCGTGAATGTGATCCAGATGTCTGTCGAAACTGTTGGGTTAGCTGTGGGGATGGTACACTGGGAGAGCCACATCGGCGTGGAGAAGGTCAATGCGGCAATATGAGACTTCTTTTAAGGCAACAACAGAGGATTATCTTGGGGAAGTCTGATGTTTCTGGATGGGGAGCCTTCTTAAAGAATCCTGTTAACAAAAATGATTACCTAGGAGAGTACACGGGTGAACTGATCTCACACAGAGAAGCTGATAAGCGTGGGAAAATATATGATCGTGCGAATTCATCTTTCCTTTTCGATTTGAATGAGCAGTATGTTCTTGATGCTTATCGTAAAGGAGACAAGTTGAAATTTGCAAACCACTCATCAAACCCCAACTGCTATGCAAAGGTAATGTTGGTTGCTGGAGATCATCGAGTTGGCATATTCGCCAAGGAACACATTGATGCCGGTGAGGAGCTCTTCTATGATTATTGCTATGGTCCAGATCAAGCACCTCCATGGGCTCGTAAACCTGAGGGTTCCAAGAGAGACGAATCAGCAATTCCACAAGGTAGAGCAAAGAAACACCAATCCCATTGA
Protein sequence

>Msa1460050

MAFEEHGLNEEVLNVVSKYVGGTSLEIQERYKSIRESNIGRLDQHPKSSGEHDFPMSMYLEKNLSDALDSLDNLFCRRCLIFDCRLHGCSQPLIYPSEKKTVWSEPVGDRKPCGDQCYLQLKVVKSFSKDSTPGSFRDKKTTIVEETDGILSPSSAEEPGSQSTTLPTRIDCHGYINLNDPDSENLSKRKVTNQSDTAQCDSRSLPDSQDSCKKLKRISDVVTVITDNSKSLHLDGPKAVTNETELKNSLNSMEERVDGILGFSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGSKTCMEISSYMHDGGMSIPHRSIISAGSIMDDKGKFDTECTDQDMPSRPRLLRKRGKTRKFKYSWKSAGHPTIWKRIADGKNQSCMQYTPCGCQSMCGKDCSCLNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGTLGEPHRRGEGQCGNMRLLLRQQQRIILGKSDVSGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDAGEELFYDYCYGPDQAPPWARKPEGSKRDESAIPQGRAKKHQSH*