AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0788300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0788300 MtrunA17_Chr5g0447261 98.843 778 9 0 1 778 1 778 0.0 1603
Msa0788300 MtrunA17_Chr3g0103491 75.802 810 160 4 1 776 1 808 0.0 1262
Msa0788300 MtrunA17_Chr3g0118451 58.021 748 249 11 37 776 23 713 0.0 847
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0788300 AT1G07380.1 74.260 777 195 4 6 777 3 779 0.0 1195
Msa0788300 AT1G07380.2 74.260 777 195 4 6 777 4 780 0.0 1195
Msa0788300 AT2G38010.3 74.054 740 180 5 40 776 26 756 0.0 1142
Msa0788300 AT2G38010.1 74.054 740 180 5 40 776 26 756 0.0 1142
Msa0788300 AT2G38010.2 70.710 775 180 6 40 776 26 791 0.0 1125
Msa0788300 AT5G58980.1 72.065 741 168 8 39 776 28 732 0.0 1103

Find 239 sgRNAs with CRISPR-Local

Find 484 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTATTAATATATAATT+TGG 0.069131 5_2:-74787516 Msa0788300:three_prime_UTR
TGAATGAAGGTTCCTAATTT+TGG 0.113917 5_2:+74794054 None:intergenic
TGTATCAGGGGAACCCTTTC+TGG 0.155421 5_2:-74789793 Msa0788300:intron
GGAGCTGCAAAGGGTTTATT+AGG 0.162179 5_2:-74787642 Msa0788300:CDS
ACCCCTCTTGGTGCAAGTTT+TGG 0.167335 5_2:-74787954 Msa0788300:CDS
GGGTGCTGCTGCACGATTTA+TGG 0.180402 5_2:-74791254 Msa0788300:CDS
ATTAATTAGTGGGGATAATA+AGG 0.182190 5_2:-74791275 Msa0788300:CDS
TAGGGTGCTTCCACACTTTA+TGG 0.192040 5_2:-74788122 Msa0788300:CDS
CTTGGAAAATTGGTCTTTCT+TGG 0.231444 5_2:-74793096 Msa0788300:five_prime_UTR
AACCGTATCACCTCTCTTAA+AGG 0.249905 5_2:+74787899 None:intergenic
ACTGCCCAATTCGGAGGATT+TGG 0.253488 5_2:+74789229 None:intergenic
TTGCATCTGGGGTTCACTTT+AGG 0.253795 5_2:-74792846 Msa0788300:CDS
AGGATCAATATTTGTCAATA+AGG 0.253952 5_2:-74792058 Msa0788300:CDS
AAGCATGCAATTCCAAAATT+AGG 0.262551 5_2:-74794066 None:intergenic
TCACCAGTATCAAGCAAAAT+AGG 0.268049 5_2:+74789707 None:intergenic
GGGTCAATTCGTCACTTTAC+AGG 0.270731 5_2:-74787621 Msa0788300:CDS
TTTGAAAGTACACGTATTAT+AGG 0.273468 5_2:-74790123 Msa0788300:CDS
TGCCCTGCTGCAATGGGATT+TGG 0.283733 5_2:-74789952 Msa0788300:CDS
GTATACAGAATAAAACATTT+TGG 0.293949 5_2:-74787663 Msa0788300:CDS
TTGAAAGTACACGTATTATA+GGG 0.295150 5_2:-74790122 Msa0788300:CDS
AATACGATAAATAAATAAAT+AGG 0.312744 5_2:-74794031 Msa0788300:five_prime_UTR
CACTCTCTAACTTGAATGTT+TGG 0.315163 5_2:-74793032 Msa0788300:CDS
ATTCACACCCATGCTGGTCC+TGG 0.316768 5_2:-74792201 Msa0788300:CDS
CCAGGAGGTCTGGTGGTTGC+GGG 0.317859 5_2:+74788018 None:intergenic
TTCTAGCAGTGGAGCTTCTA+AGG 0.320178 5_2:-74789986 Msa0788300:CDS
ACCGGCTAAGCTTGGAAAAT+TGG 0.327940 5_2:-74793106 Msa0788300:five_prime_UTR
AACATTCATGTTGTTATAGC+AGG 0.333161 5_2:-74788622 Msa0788300:CDS
CGTGTACTTTCAAATTCATC+TGG 0.337017 5_2:+74790132 None:intergenic
TAGGTTTGTTAACCTGTCTA+AGG 0.340793 5_2:+74790407 None:intergenic
TCTAGCAACACTTGAAGTTT+TGG 0.340869 5_2:+74790444 None:intergenic
GGAGCATCTGAACAGATTAA+AGG 0.342606 5_2:-74790063 Msa0788300:CDS
CCAATCCAAATCCTCCGAAT+TGG 0.345676 5_2:-74789234 Msa0788300:CDS
CCCACACTTGCTGCAAGCTT+TGG 0.346712 5_2:-74793867 Msa0788300:five_prime_UTR
TTCACACCCATGCTGGTCCT+GGG 0.349429 5_2:-74792200 Msa0788300:CDS
AACACAGAGCAGATTGCATC+TGG 0.359080 5_2:-74792859 Msa0788300:CDS
TCATTTGATGCCCTTGTTGA+TGG 0.361338 5_2:-74792123 Msa0788300:CDS
GAAAATAATGTAGCGATTAG+TGG 0.362437 5_2:-74792225 Msa0788300:CDS
GTCCTTCGGGAAGCTTCAAC+TGG 0.364059 5_2:-74791336 Msa0788300:CDS
TTATGCTATGGCCGGGGACC+TGG 0.366600 5_2:-74790259 Msa0788300:CDS
GATTCATTCTACACGTTCAA+TGG 0.367273 5_2:-74787550 Msa0788300:three_prime_UTR
TCCAGGAGGTCTGGTGGTTG+CGG 0.375652 5_2:+74788017 None:intergenic
ATCTCCAAGGGAAGGATACT+TGG 0.377460 5_2:-74787806 Msa0788300:CDS
TTATTATTAATATATAATTT+GGG 0.377477 5_2:-74787515 Msa0788300:three_prime_UTR
ATTTGGATTGGAAGTATAGT+AGG 0.379596 5_2:+74789246 None:intergenic
TGTAACTACTTGATTGGTCT+TGG 0.380743 5_2:-74792934 Msa0788300:CDS
AAATGAAGCTTCCATATGAT+TGG 0.381567 5_2:-74789685 Msa0788300:CDS
TTGCCGAGCCTAAGGGTAAT+AGG 0.383793 5_2:-74792801 Msa0788300:CDS
AAAGATCACAACTTTACATC+TGG 0.384903 5_2:-74793816 Msa0788300:five_prime_UTR
GGGGAACCCTTTCTGGAAAC+TGG 0.385318 5_2:-74789786 Msa0788300:CDS
TGGTACAGATCATGAATTAC+TGG 0.387161 5_2:-74790509 Msa0788300:intron
CTTACGATTATTATGAAGAC+TGG 0.388418 5_2:+74791141 None:intergenic
TCTGTAAAGAATTTGTGATA+TGG 0.389696 5_2:+74787397 None:intergenic
ATTTGCTTGTCCAGGAGGTC+TGG 0.390871 5_2:+74788008 None:intergenic
TTTCTTGGTTGATTTGAACT+TGG 0.391219 5_2:-74793081 Msa0788300:five_prime_UTR
CACATTGAGTGCATACATTC+AGG 0.395769 5_2:-74788093 Msa0788300:CDS
TGTTAATCTCGATGCTTGTA+TGG 0.396574 5_2:-74792770 Msa0788300:CDS
CAAAATGCAGATACAAATCT+AGG 0.397406 5_2:+74790388 None:intergenic
CAGGCTATTTGTTCCTTGTC+AGG 0.400770 5_2:+74789743 None:intergenic
CCCGCAACCACCAGACCTCC+TGG 0.403471 5_2:-74788018 Msa0788300:CDS
TGAAGTTTGTTGATGATGAA+TGG 0.409322 5_2:-74791360 Msa0788300:CDS
AGGGAAAGAGGAGTGGAGGA+AGG 0.409423 5_2:+74793953 None:intergenic
GGGAAAGAGGAGTGGAGGAA+GGG 0.410269 5_2:+74793954 None:intergenic
AACGGCCAGCCTGTAGAATC+AGG 0.412830 5_2:-74788041 Msa0788300:CDS
CATTGAGAAAAGCATTGTTC+AGG 0.415604 5_2:-74792100 Msa0788300:CDS
TTCTTGGTTGATTTGAACTT+GGG 0.415988 5_2:-74793080 Msa0788300:five_prime_UTR
GCATATTGTAACTACTTGAT+TGG 0.417734 5_2:-74792940 Msa0788300:CDS
TGTGTATATTGTAACATCTC+TGG 0.423896 5_2:-74792160 Msa0788300:CDS
CAATCCAAATCCTCCGAATT+GGG 0.426759 5_2:-74789233 Msa0788300:CDS
CTGGTCTACCGGGAGGAGAT+TGG 0.427326 5_2:+74790470 None:intergenic
TATTTATCGTATTTGAATGA+AGG 0.427474 5_2:+74794041 None:intergenic
GAAGTTTGTTGATGATGAAT+GGG 0.427897 5_2:-74791359 Msa0788300:CDS
GATGATGAATGGGGTCCTTC+GGG 0.429393 5_2:-74791349 Msa0788300:CDS
TGATGATGAATGGGGTCCTT+CGG 0.430776 5_2:-74791350 Msa0788300:CDS
TTTCTGCAACTATGACAGTT+TGG 0.431693 5_2:-74793005 Msa0788300:CDS
TCTGTTAGATTTGAAGATGA+TGG 0.432758 5_2:-74791193 Msa0788300:CDS
ATGGGATTTGGATTTGCTGC+TGG 0.434763 5_2:-74789940 Msa0788300:CDS
GACCTCCTGGACAAGCAAAT+AGG 0.436248 5_2:-74788005 Msa0788300:CDS
CTTGGAAGCTATGACATTAC+CGG 0.440574 5_2:-74792916 Msa0788300:CDS
GAGCTGCAAAGGGTTTATTA+GGG 0.442673 5_2:-74787641 Msa0788300:CDS
TAACTTACAGCCCAATCATA+TGG 0.442820 5_2:+74789674 None:intergenic
CAGTGAAGACAGTGCTAAGC+GGG 0.445447 5_2:-74788663 Msa0788300:CDS
TTATTGACAAATATTGATCC+TGG 0.451580 5_2:+74792060 None:intergenic
AAAATGTACCTTCGGTCATA+AGG 0.452052 5_2:+74787841 None:intergenic
GGATCAATATTTGTCAATAA+GGG 0.454815 5_2:-74792057 Msa0788300:intron
GGAAAGAGGAGTGGAGGAAG+GGG 0.456676 5_2:+74793955 None:intergenic
AGTGATGATGAAAGGGAAAG+AGG 0.460705 5_2:+74793941 None:intergenic
CTGGGGTTCACTTTAGGTTG+CGG 0.461071 5_2:-74792840 Msa0788300:CDS
TAATCCAGTGTCTGTACAAA+AGG 0.461471 5_2:+74790324 None:intergenic
TGAAGGGAAATGAGAAGAAC+CGG 0.462467 5_2:-74793124 Msa0788300:intron
ACAGAATTCACAACAATGGC+TGG 0.467317 5_2:-74788703 Msa0788300:intron
TTGCTTAAAATCAAATGCTC+CGG 0.467520 5_2:+74789903 None:intergenic
GTATCAAGCAAAATAGGCTT+TGG 0.468390 5_2:+74789713 None:intergenic
GGTTGCGGGCCTGATTCTAC+AGG 0.469785 5_2:+74788032 None:intergenic
AGAAACATTTACCTCGAGCT+TGG 0.469793 5_2:+74790005 None:intergenic
TTAATTAGTGGGGATAATAA+GGG 0.471161 5_2:-74791274 Msa0788300:CDS
TACGGACCAGTTTCCAGAAA+GGG 0.471355 5_2:+74789780 None:intergenic
AAAGACATGCCCTGCTGCAA+TGG 0.471735 5_2:-74789959 Msa0788300:CDS
AGAATACATAAATTAAATCA+AGG 0.472911 5_2:-74787470 Msa0788300:three_prime_UTR
GTAAGCCTATTTGCTTGTCC+AGG 0.474340 5_2:+74788000 None:intergenic
TAAATAAATAAATAGGAGGA+AGG 0.475977 5_2:-74794024 Msa0788300:five_prime_UTR
TGGTATTCTCCATTCTATTG+TGG 0.476390 5_2:+74787704 None:intergenic
CACCTTTAAGAGAGGTGATA+CGG 0.479332 5_2:-74787901 Msa0788300:CDS
GTACAAATTCATTAATTAGT+GGG 0.481029 5_2:-74791285 Msa0788300:CDS
AATCCAAATCCCATTGCAGC+AGG 0.482843 5_2:+74789949 None:intergenic
AAGACATGCCCTGCTGCAAT+GGG 0.483175 5_2:-74789958 Msa0788300:CDS
TAGAGAAAGTGATGATGAAA+GGG 0.490877 5_2:+74793934 None:intergenic
ATAGTAAAGCCACAATAGAA+TGG 0.492162 5_2:-74787713 Msa0788300:CDS
CTGCACGATTTATGGAAGAC+TGG 0.492992 5_2:-74791246 Msa0788300:CDS
TGAGAAGAACCGGCTAAGCT+TGG 0.493720 5_2:-74793114 Msa0788300:five_prime_UTR
CTAGAGAAAGTGATGATGAA+AGG 0.493970 5_2:+74793933 None:intergenic
CGGATTGTTGAGGTAAGCGC+TGG 0.494389 5_2:+74791435 None:intergenic
CTCTAACTTGAATGTTTGGA+GGG 0.494796 5_2:-74793028 Msa0788300:CDS
TCACACCCATGCTGGTCCTG+GGG 0.495121 5_2:-74792199 Msa0788300:CDS
CAAAAGGCTCCAAGTACATT+CGG 0.495399 5_2:+74790340 None:intergenic
AATAGGCTTTGGCTGCTGAC+AGG 0.497624 5_2:+74789724 None:intergenic
CACATACTGTGAATAAGTAT+TGG 0.499983 5_2:+74788594 None:intergenic
GAATGAGTTATGCTATGGCC+GGG 0.500547 5_2:-74790266 Msa0788300:CDS
CACCAGAGAAAATGTACCTT+CGG 0.503106 5_2:+74787833 None:intergenic
GTTAACATCAGCTGCAGGAC+CGG 0.503541 5_2:+74792897 None:intergenic
TCTCTAACTTGAATGTTTGG+AGG 0.504431 5_2:-74793029 Msa0788300:CDS
CGTACAAATTCATTAATTAG+TGG 0.509704 5_2:-74791286 Msa0788300:CDS
ACCAAAGCTTGCAGCAAGTG+TGG 0.510651 5_2:+74793866 None:intergenic
TGCAGCTGATGTTAACATGA+TGG 0.511060 5_2:-74792890 Msa0788300:CDS
GAACCCAAGTATCCTTCCCT+TGG 0.511188 5_2:+74787802 None:intergenic
TTTGCTGCTGGAACAACTGA+TGG 0.511314 5_2:-74789928 Msa0788300:CDS
CTATGAGTACTGAGTTTGAA+AGG 0.511908 5_2:+74787732 None:intergenic
AGAATGAGTTATGCTATGGC+CGG 0.513372 5_2:-74790267 Msa0788300:CDS
GATGTTAGTCCGAATGTACT+TGG 0.514633 5_2:-74790349 Msa0788300:CDS
TATTTGCTTCTCTCTGCAGC+CGG 0.515049 5_2:+74791415 None:intergenic
TGTAAGAGGTGCCCTTAGAC+AGG 0.516528 5_2:-74790419 Msa0788300:CDS
TTCAACTGGTTTGCTACTCA+TGG 0.520824 5_2:-74791322 Msa0788300:CDS
AAAGCAGTGGAGCTATTCAA+TGG 0.522635 5_2:-74790084 Msa0788300:CDS
GCGGGCCTGATTCTACAGGC+TGG 0.526732 5_2:+74788036 None:intergenic
CCAATTCGGAGGATTTGGAT+TGG 0.527785 5_2:+74789234 None:intergenic
GGGGTTCCATCCATCACTAC+TGG 0.531201 5_2:+74787972 None:intergenic
TGCTTAAAATCAAATGCTCC+GGG 0.533187 5_2:+74789904 None:intergenic
CTAAGCGGGGACAAAAGCTT+AGG 0.537641 5_2:-74788649 Msa0788300:CDS
TGAAAGGGAAAGAGGAGTGG+AGG 0.539343 5_2:+74793949 None:intergenic
AAATCATCATCGTCATAAGC+AGG 0.542582 5_2:+74787780 None:intergenic
ATTATGTTTGAAATTCTTCG+AGG 0.543415 5_2:+74791166 None:intergenic
GTACGAGGTGCAAAGATATG+AGG 0.544022 5_2:-74788557 Msa0788300:intron
TAAATAATTACCCAGGTCCC+CGG 0.546403 5_2:+74790248 None:intergenic
CATTCAAGTTAGAGAGTGAA+GGG 0.548327 5_2:+74793037 None:intergenic
CCCCAAAACTTGCACCAAGA+GGG 0.548804 5_2:+74787952 None:intergenic
GTTAATCTCGATGCTTGTAT+GGG 0.551831 5_2:-74792769 Msa0788300:CDS
TTACGGACCAGTTTCCAGAA+AGG 0.552216 5_2:+74789779 None:intergenic
ACATTCATGTTGTTATAGCA+GGG 0.552414 5_2:-74788621 Msa0788300:CDS
TACAAATTCATTAATTAGTG+GGG 0.552625 5_2:-74791284 Msa0788300:CDS
AGTGGAATTCACACCCATGC+TGG 0.553562 5_2:-74792207 Msa0788300:CDS
ATACCACAGGATGTAGCTCC+TGG 0.555371 5_2:-74787687 Msa0788300:CDS
TTACTATCAAAGTACTTGAG+AGG 0.555403 5_2:-74792735 Msa0788300:CDS
CAACAAGGGCATCAAATGAC+TGG 0.557309 5_2:+74792127 None:intergenic
GTGTATATTGTAACATCTCT+GGG 0.558277 5_2:-74792159 Msa0788300:CDS
ATCTGAACAGATTAAAGGAA+AGG 0.558373 5_2:-74790058 Msa0788300:CDS
TATTGACAAATATTGATCCT+GGG 0.561235 5_2:+74792061 None:intergenic
CATTTGTAGTAGCACACTAA+AGG 0.561836 5_2:-74787587 Msa0788300:exon
CACAGAGCAGATTGCATCTG+GGG 0.562906 5_2:-74792857 Msa0788300:CDS
GTGTGCGCTTCAAATGGTCA+AGG 0.563276 5_2:-74787755 Msa0788300:CDS
TGTAGTAGCACACTAAAGGA+AGG 0.563282 5_2:-74787583 Msa0788300:exon
AAGATCACAACTTTACATCT+GGG 0.565090 5_2:-74793815 Msa0788300:five_prime_UTR
CAGCGCTTACCTCAACAATC+CGG 0.567342 5_2:-74791434 Msa0788300:CDS
TGATGAAAGGGAAAGAGGAG+TGG 0.567615 5_2:+74793946 None:intergenic
GCAGCTGATGTTAACATGAT+GGG 0.567890 5_2:-74792889 Msa0788300:CDS
ACGATAAATAAATAAATAGG+AGG 0.567913 5_2:-74794028 Msa0788300:five_prime_UTR
TATGCTATGGCCGGGGACCT+GGG 0.569494 5_2:-74790258 Msa0788300:intron
TCACAACAATGGCTGGGAGG+CGG 0.569943 5_2:-74788696 Msa0788300:CDS
AGTGTTGCTAGACGTGTAAG+AGG 0.571419 5_2:-74790433 Msa0788300:CDS
CTTACTAACACCAGTAGTGA+TGG 0.571782 5_2:-74787982 Msa0788300:CDS
CGTATCACCTCTCTTAAAGG+TGG 0.576466 5_2:+74787902 None:intergenic
ATCATGTTAACATCAGCTGC+AGG 0.578755 5_2:+74792892 None:intergenic
GCACATGAAAATCTCCGCCC+AGG 0.580646 5_2:-74792078 Msa0788300:CDS
TTTATTGTTGCCGAGCCTAA+GGG 0.580712 5_2:-74792808 Msa0788300:CDS
ACACAGAGCAGATTGCATCT+GGG 0.581328 5_2:-74792858 Msa0788300:CDS
TTCAATCACAGCACATGTGG+GGG 0.582383 5_2:-74790292 Msa0788300:CDS
AGCCTATTTGCTTGTCCAGG+AGG 0.582673 5_2:+74788003 None:intergenic
ACATTCAAGTTAGAGAGTGA+AGG 0.583381 5_2:+74793036 None:intergenic
GGGAAGAATGAGTTATGCTA+TGG 0.583650 5_2:-74790271 Msa0788300:CDS
AACACTAGCCTATTACCCTT+AGG 0.583889 5_2:+74792793 None:intergenic
AATGAAGCTTCCATATGATT+GGG 0.584180 5_2:-74789684 Msa0788300:CDS
CTAACACCAGTAGTGATGGA+TGG 0.584666 5_2:-74787978 Msa0788300:CDS
GTGTACTTTCAAATTCATCT+GGG 0.585221 5_2:+74790133 None:intergenic
GACTTCAATCACAGCACATG+TGG 0.585442 5_2:-74790295 Msa0788300:CDS
CGGTCATAAGGTCATTTCGA+GGG 0.585678 5_2:+74787853 None:intergenic
CCAAAGCTTGCAGCAAGTGT+GGG 0.588327 5_2:+74793867 None:intergenic
CACCTCGTACTCCTCGTATG+TGG 0.589423 5_2:+74788570 None:intergenic
GCATCATTCCAATCTCCTCC+CGG 0.589478 5_2:-74790478 Msa0788300:CDS
CTCTGGTGGAATATCTCCAA+GGG 0.591674 5_2:-74787818 Msa0788300:CDS
TGAACAGATTAAAGGAAAGG+TGG 0.591836 5_2:-74790055 Msa0788300:CDS
AAGACAGACAGACAGAGTTG+TGG 0.592859 5_2:+74793984 None:intergenic
TCTCTGGTGGAATATCTCCA+AGG 0.594118 5_2:-74787819 Msa0788300:CDS
AGGTTTGTTAACCTGTCTAA+GGG 0.594837 5_2:+74790408 None:intergenic
TGCTTGTCCAGGAGGTCTGG+TGG 0.595380 5_2:+74788011 None:intergenic
ACTTCAATCACAGCACATGT+GGG 0.598369 5_2:-74790294 Msa0788300:CDS
TCTCTGCAGCCGGATTGTTG+AGG 0.598527 5_2:+74791425 None:intergenic
TTACTTGTGAATATTAGCCA+AGG 0.599347 5_2:+74787345 None:intergenic
GAGGTAAATGTTTCTAGCAG+TGG 0.603184 5_2:-74789997 Msa0788300:CDS
CACACCCATGCTGGTCCTGG+GGG 0.603868 5_2:-74792198 Msa0788300:CDS
TGAAAGTACACGTATTATAG+GGG 0.604050 5_2:-74790121 Msa0788300:CDS
CCCAAAACTTGCACCAAGAG+GGG 0.604719 5_2:+74787953 None:intergenic
TCTCCAAGGGAAGGATACTT+GGG 0.604920 5_2:-74787805 Msa0788300:CDS
CAGAATTCACAACAATGGCT+GGG 0.606076 5_2:-74788702 Msa0788300:CDS
GTGATGGATGGAACCCCTCT+TGG 0.606165 5_2:-74787966 Msa0788300:CDS
TTTCTCAATGCCATCAACAA+GGG 0.607066 5_2:+74792113 None:intergenic
AATAGAATGGAGAATACCAC+AGG 0.608925 5_2:-74787700 Msa0788300:CDS
AAATAAATAAATAGGAGGAA+GGG 0.609810 5_2:-74794023 Msa0788300:five_prime_UTR
TCGGTCATAAGGTCATTTCG+AGG 0.613759 5_2:+74787852 None:intergenic
TAGCCTATTACCCTTAGGCT+CGG 0.623029 5_2:+74792798 None:intergenic
TCTGGATAACAAAGGACATG+TGG 0.623405 5_2:+74787437 None:intergenic
GCTGGAACAACTGATGGACC+CGG 0.623560 5_2:-74789922 Msa0788300:CDS
TACTTGAGAGGCTTAAAGCA+AGG 0.625748 5_2:-74792723 Msa0788300:intron
TTTACTGAAAACGCCTGACA+AGG 0.625837 5_2:-74789756 Msa0788300:CDS
AATGAGTTATGCTATGGCCG+GGG 0.625978 5_2:-74790265 Msa0788300:CDS
GTAGTAGCACACTAAAGGAA+GGG 0.627966 5_2:-74787582 Msa0788300:exon
CTTCAATCACAGCACATGTG+GGG 0.630784 5_2:-74790293 Msa0788300:CDS
ACACCCATGCTGGTCCTGGG+GGG 0.630793 5_2:-74792197 Msa0788300:CDS
TCCCCAAAACTTGCACCAAG+AGG 0.631634 5_2:+74787951 None:intergenic
CGAAATGACCTTATGACCGA+AGG 0.634937 5_2:-74787849 Msa0788300:CDS
AACCAGTTGAAGCTTCCCGA+AGG 0.641124 5_2:+74791334 None:intergenic
TTACGATTATTATGAAGACT+GGG 0.643788 5_2:+74791142 None:intergenic
TCTGACAGAATTCACAACAA+TGG 0.655113 5_2:-74788707 Msa0788300:intron
GGTGGAATATCTCCAAGGGA+AGG 0.657299 5_2:-74787814 Msa0788300:CDS
AAGTTTGTTGATGATGAATG+GGG 0.657872 5_2:-74791358 Msa0788300:CDS
ATCCAAATCCCATTGCAGCA+GGG 0.660254 5_2:+74789950 None:intergenic
CTTGCACACGCTCTCATCAA+CGG 0.665760 5_2:-74788059 Msa0788300:CDS
GGATTGTTGAGGTAAGCGCT+GGG 0.676508 5_2:+74791436 None:intergenic
GACCACATACGAGGAGTACG+AGG 0.677175 5_2:-74788572 Msa0788300:CDS
ACACCAGGAGCTACATCCTG+TGG 0.687402 5_2:+74787684 None:intergenic
TTTATTCTTAGTGTACCAGG+AGG 0.687580 5_2:-74789204 Msa0788300:intron
TTGGTCGCTGGTCTACCGGG+AGG 0.688120 5_2:+74790463 None:intergenic
TCAATCACAGCACATGTGGG+GGG 0.690919 5_2:-74790291 Msa0788300:CDS
ATCACAACTTTACATCTGGG+TGG 0.691314 5_2:-74793812 Msa0788300:intron
ATGTATGCACTCAATGTGTG+TGG 0.694548 5_2:+74788098 None:intergenic
TGACAAATATTGATCCTGGG+CGG 0.695181 5_2:+74792064 None:intergenic
ACAGTATGTGACCACATACG+AGG 0.711222 5_2:-74788581 Msa0788300:CDS
GCAGTGAAGACAGTGCTAAG+CGG 0.712901 5_2:-74788664 Msa0788300:CDS
AGTGAAGACAGTGCTAAGCG+GGG 0.715425 5_2:-74788662 Msa0788300:CDS
AATTCACAACAATGGCTGGG+AGG 0.717802 5_2:-74788699 Msa0788300:CDS
GTGCTGTGATTGAAGTCACA+AGG 0.729346 5_2:+74790301 None:intergenic
TGTGTGTGGACCATAAAGTG+TGG 0.758656 5_2:+74788112 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTAATATATAATTT+GGG - chr5_2:74793896-74793915 Msa0788300:five_prime_UTR 0.0%
!! AATACGATAAATAAATAAAT+AGG - chr5_2:74787380-74787399 Msa0788300:three_prime_UTR 10.0%
!! TGAAATATAAATAGAAATTT+GGG + chr5_2:74787797-74787816 None:intergenic 10.0%
!! ATGAAATATAAATAGAAATT+TGG + chr5_2:74787798-74787817 None:intergenic 10.0%
!!! TTTTTATTTTTGTTCTTTAA+TGG - chr5_2:74787820-74787839 Msa0788300:CDS 10.0%
!!! TTTTATTTTTGTTCTTTAAT+GGG - chr5_2:74787821-74787840 Msa0788300:CDS 10.0%
!!! GAAGTTTTTTTTTTTTTTTT+TGG - chr5_2:74791990-74792009 Msa0788300:intron 10.0%
!! ATAAAAACATAATTAACAGA+GGG + chr5_2:74787642-74787661 None:intergenic 15.0%
!! ATTTACCTTGTATTATATAT+GGG + chr5_2:74788825-74788844 None:intergenic 15.0%
!!! TTCAATTATTAATTGATAGT+AGG - chr5_2:74790343-74790362 Msa0788300:CDS 15.0%
!! ATTATCACTTATATAAAGTA+AGG + chr5_2:74790791-74790810 None:intergenic 15.0%
!!! TTTAATGAGTAATATTTTCT+TGG - chr5_2:74790812-74790831 Msa0788300:intron 15.0%
!!! TCATTTTAGTAAATTTGTAA+TGG - chr5_2:74791904-74791923 Msa0788300:intron 15.0%
!! ATTAATTGAATTTACTAAAG+TGG + chr5_2:74791964-74791983 None:intergenic 15.0%
!!! CTTAACATTTTAAAATGTAA+AGG + chr5_2:74792278-74792297 None:intergenic 15.0%
!! TTCAATTATTCATATTGTTA+GGG - chr5_2:74793271-74793290 Msa0788300:intron 15.0%
!! AGAATACATAAATTAAATCA+AGG - chr5_2:74793941-74793960 Msa0788300:five_prime_UTR 15.0%
!! ACAAAAAGATTTAATGAAAT+CGG + chr5_2:74794043-74794062 None:intergenic 15.0%
!!! ATTTCATTAAATCTTTTTGT+GGG - chr5_2:74794043-74794062 Msa0788300:five_prime_UTR 15.0%
!! TATTTATCGTATTTGAATGA+AGG + chr5_2:74787373-74787392 None:intergenic 20.0%
!! ACGATAAATAAATAAATAGG+AGG - chr5_2:74787383-74787402 Msa0788300:three_prime_UTR 20.0%
!! TAAATAAATAAATAGGAGGA+AGG - chr5_2:74787387-74787406 Msa0788300:three_prime_UTR 20.0%
!! AAATAAATAAATAGGAGGAA+GGG - chr5_2:74787388-74787407 Msa0788300:three_prime_UTR 20.0%
!! CATAAAAACATAATTAACAG+AGG + chr5_2:74787643-74787662 None:intergenic 20.0%
!!! CACTAACATTATTTTTAGAA+TGG + chr5_2:74788136-74788155 None:intergenic 20.0%
!!! CATTCTAAAAATAATGTTAG+TGG - chr5_2:74788134-74788153 Msa0788300:intron 20.0%
!! GATTTACCTTGTATTATATA+TGG + chr5_2:74788826-74788845 None:intergenic 20.0%
!!! TTTATTTTGTTTGACAGATA+TGG - chr5_2:74789150-74789169 Msa0788300:intron 20.0%
!! TATCCATTATAAATACCTAA+GGG + chr5_2:74789408-74789427 None:intergenic 20.0%
!! TTATCCATTATAAATACCTA+AGG + chr5_2:74789409-74789428 None:intergenic 20.0%
!!! ACTTCAATGTTATTTAATTG+TGG - chr5_2:74789428-74789447 Msa0788300:intron 20.0%
!!! CTTCAATGTTATTTAATTGT+GGG - chr5_2:74789429-74789448 Msa0788300:intron 20.0%
!! AGAAAAAGATGAAAATCTAT+AGG - chr5_2:74789478-74789497 Msa0788300:intron 20.0%
!! AGATTATGAAAGAACAAAAA+AGG + chr5_2:74789569-74789588 None:intergenic 20.0%
!! GTACAAATTCATTAATTAGT+GGG - chr5_2:74790126-74790145 Msa0788300:CDS 20.0%
!! TACAAATTCATTAATTAGTG+GGG - chr5_2:74790127-74790146 Msa0788300:CDS 20.0%
!! TAAGCTTTCTTTAATGTATT+TGG - chr5_2:74790289-74790308 Msa0788300:CDS 20.0%
!!! TTATTAATTGATAGTAGGTT+TGG - chr5_2:74790348-74790367 Msa0788300:CDS 20.0%
!! GATAGATAGTTATAACTTAT+GGG + chr5_2:74790579-74790598 None:intergenic 20.0%
!! AGATAGATAGTTATAACTTA+TGG + chr5_2:74790580-74790599 None:intergenic 20.0%
!!! TATTTTCTTGGATATGATTT+AGG - chr5_2:74790824-74790843 Msa0788300:intron 20.0%
!!! ATTTTCTTGGATATGATTTA+GGG - chr5_2:74790825-74790844 Msa0788300:intron 20.0%
!! TAATCTCACATGAAATTTAT+TGG - chr5_2:74790882-74790901 Msa0788300:intron 20.0%
!! TATGTAATAAATAATTACCC+AGG + chr5_2:74791173-74791192 None:intergenic 20.0%
!! ATATATAAGAATACAAGTCT+AGG + chr5_2:74791583-74791602 None:intergenic 20.0%
!! ACAAAATATTCAGCATAAAA+GGG + chr5_2:74791763-74791782 None:intergenic 20.0%
!!! GATTAGTTATATGGTTAATT+AGG - chr5_2:74791807-74791826 Msa0788300:intron 20.0%
!! TTAATTAGGAAAAAAAGAGA+GGG - chr5_2:74791821-74791840 Msa0788300:intron 20.0%
!! AAAAAATGTAGACATACATA+TGG + chr5_2:74792072-74792091 None:intergenic 20.0%
!!! TACATTTTTTTTTCTTTCTG+TGG - chr5_2:74792082-74792101 Msa0788300:CDS 20.0%
!!! ATGTATGATTTTCATTGATT+CGG + chr5_2:74792343-74792362 None:intergenic 20.0%
!! AATGTATTAAACAAGACATT+TGG + chr5_2:74792540-74792559 None:intergenic 20.0%
!! TCAAATAAGTATCTTTGTAT+TGG - chr5_2:74792985-74793004 Msa0788300:CDS 20.0%
!!! TTAACAGAGTTTTGAAAAAA+AGG + chr5_2:74793200-74793219 None:intergenic 20.0%
!! CTTCAATTATTCATATTGTT+AGG - chr5_2:74793270-74793289 Msa0788300:intron 20.0%
!!! GTATACAGAATAAAACATTT+TGG - chr5_2:74793748-74793767 Msa0788300:intron 20.0%
!!! TAAAAATTTCTGGATAACAA+AGG + chr5_2:74793985-74794004 None:intergenic 20.0%
!! GAAAAGCAAATAAAAATTTC+TGG + chr5_2:74793995-74794014 None:intergenic 20.0%
!!! GATTTCATTAAATCTTTTTG+TGG - chr5_2:74794042-74794061 Msa0788300:five_prime_UTR 20.0%
! AATGCAGAGAATTCTAATTT+GGG + chr5_2:74787737-74787756 None:intergenic 25.0%
! AAATGCAGAGAATTCTAATT+TGG + chr5_2:74787738-74787757 None:intergenic 25.0%
! TAAACAAGGAATTCCAATTT+GGG + chr5_2:74787974-74787993 None:intergenic 25.0%
! AAAAACATGAAAGGTAAACA+AGG + chr5_2:74787988-74788007 None:intergenic 25.0%
! TCACTCAAAAAAAACATGAA+AGG + chr5_2:74787997-74788016 None:intergenic 25.0%
!!! GTTTGAGTGTTATTTTTTGT+CGG - chr5_2:74788161-74788180 Msa0788300:intron 25.0%
!! AAATTTCTGAGGATCAAATT+GGG - chr5_2:74788204-74788223 Msa0788300:intron 25.0%
! TTACAATAGATTGACTATCA+AGG - chr5_2:74788738-74788757 Msa0788300:intron 25.0%
! ATTGACCCATATATAATACA+AGG - chr5_2:74788817-74788836 Msa0788300:intron 25.0%
! TGAAAAGGTCAATTTCTTAT+GGG + chr5_2:74788862-74788881 None:intergenic 25.0%
! ACAAAATAAAATGCAATGTC+AGG + chr5_2:74789140-74789159 None:intergenic 25.0%
! TATTGACAAATATTGATCCT+GGG + chr5_2:74789353-74789372 None:intergenic 25.0%
! TTATTGACAAATATTGATCC+TGG + chr5_2:74789354-74789373 None:intergenic 25.0%
! AGGATCAATATTTGTCAATA+AGG - chr5_2:74789353-74789372 Msa0788300:intron 25.0%
! GGATCAATATTTGTCAATAA+GGG - chr5_2:74789354-74789373 Msa0788300:intron 25.0%
! AATATTTGTCAATAAGGGTA+AGG - chr5_2:74789359-74789378 Msa0788300:intron 25.0%
! ATATTTGTCAATAAGGGTAA+GGG - chr5_2:74789360-74789379 Msa0788300:intron 25.0%
!! TGTCTTTGTATAGTTTTTCA+GGG + chr5_2:74789837-74789856 None:intergenic 25.0%
! CGTACAAATTCATTAATTAG+TGG - chr5_2:74790125-74790144 Msa0788300:CDS 25.0%
! ATTAATTAGTGGGGATAATA+AGG - chr5_2:74790136-74790155 Msa0788300:CDS 25.0%
! TTAATTAGTGGGGATAATAA+GGG - chr5_2:74790137-74790156 Msa0788300:CDS 25.0%
!! ATTATGTTTGAAATTCTTCG+AGG + chr5_2:74790248-74790267 None:intergenic 25.0%
! TTACGATTATTATGAAGACT+GGG + chr5_2:74790272-74790291 None:intergenic 25.0%
! ATATAGTATAGCTGTTCTAT+TGG - chr5_2:74790543-74790562 Msa0788300:intron 25.0%
!! TTTTCTTGGATATGATTTAG+GGG - chr5_2:74790826-74790845 Msa0788300:intron 25.0%
!! TTTGAAAGTACACGTATTAT+AGG - chr5_2:74791288-74791307 Msa0788300:CDS 25.0%
!! TTGAAAGTACACGTATTATA+GGG - chr5_2:74791289-74791308 Msa0788300:CDS 25.0%
!!! TTACTTTTTTGTGTGTATCA+GGG - chr5_2:74791605-74791624 Msa0788300:intron 25.0%
! GACAAAATATTCAGCATAAA+AGG + chr5_2:74791764-74791783 None:intergenic 25.0%
! GTTAATTAGGAAAAAAAGAG+AGG - chr5_2:74791820-74791839 Msa0788300:intron 25.0%
!!! TTTTTTATTCTTAGTGTACC+AGG - chr5_2:74792204-74792223 Msa0788300:CDS 25.0%
!!! ATCACGATATTTTGACTATT+TGG - chr5_2:74792409-74792428 Msa0788300:intron 25.0%
!!! TCACGATATTTTGACTATTT+GGG - chr5_2:74792410-74792429 Msa0788300:intron 25.0%
! TACATTGCAGTTCTATTATA+TGG - chr5_2:74792554-74792573 Msa0788300:intron 25.0%
! TATCACCTATGTATTTCTTT+GGG - chr5_2:74792652-74792671 Msa0788300:intron 25.0%
! TCTGTAAAGAATTTGTGATA+TGG + chr5_2:74794017-74794036 None:intergenic 25.0%
! TAGAGAAAGTGATGATGAAA+GGG + chr5_2:74787480-74787499 None:intergenic 30.0%
AAAGATCACAACTTTACATC+TGG - chr5_2:74787595-74787614 Msa0788300:CDS 30.0%
AAGATCACAACTTTACATCT+GGG - chr5_2:74787596-74787615 Msa0788300:CDS 30.0%
TTGGGAGGTTAATTAATCAT+GGG + chr5_2:74787719-74787738 None:intergenic 30.0%
TTTGGGAGGTTAATTAATCA+TGG + chr5_2:74787720-74787739 None:intergenic 30.0%
! TTTTGTTCTTTAATGGGAAC+TGG - chr5_2:74787827-74787846 Msa0788300:CDS 30.0%
TTTGTTCTTTAATGGGAACT+GGG - chr5_2:74787828-74787847 Msa0788300:CDS 30.0%
GAATTCATCAATCATGGTTA+TGG + chr5_2:74787952-74787971 None:intergenic 30.0%
ATTTGGGAATTCATCAATCA+TGG + chr5_2:74787958-74787977 None:intergenic 30.0%
TGATTGATGAATTCCCAAAT+TGG - chr5_2:74787958-74787977 Msa0788300:CDS 30.0%
GTAAACAAGGAATTCCAATT+TGG + chr5_2:74787975-74787994 None:intergenic 30.0%
! GTTTTGTGAGTGACTAAATT+AGG + chr5_2:74788050-74788069 None:intergenic 30.0%
! GAAATTTCTGAGGATCAAAT+TGG - chr5_2:74788203-74788222 Msa0788300:intron 30.0%
! AATTTCTGAGGATCAAATTG+GGG - chr5_2:74788205-74788224 Msa0788300:intron 30.0%
!! TTTGTGTGTTTGATTTGTGA+AGG - chr5_2:74788270-74788289 Msa0788300:intron 30.0%
!! TTGTGTGTTTGATTTGTGAA+GGG - chr5_2:74788271-74788290 Msa0788300:intron 30.0%
!! TTTCTTGGTTGATTTGAACT+TGG - chr5_2:74788330-74788349 Msa0788300:intron 30.0%
!! TTCTTGGTTGATTTGAACTT+GGG - chr5_2:74788331-74788350 Msa0788300:intron 30.0%
GCATATTGTAACTACTTGAT+TGG - chr5_2:74788471-74788490 Msa0788300:intron 30.0%
! TTACTATCAAAGTACTTGAG+AGG - chr5_2:74788676-74788695 Msa0788300:CDS 30.0%
CTGAAAAGGTCAATTTCTTA+TGG + chr5_2:74788863-74788882 None:intergenic 30.0%
! GAAATTGACCTTTTCAGAAT+AGG - chr5_2:74788866-74788885 Msa0788300:intron 30.0%
TCACGAAATCAGCTATAATT+TGG + chr5_2:74788954-74788973 None:intergenic 30.0%
GAAAATAATGTAGCGATTAG+TGG - chr5_2:74789186-74789205 Msa0788300:intron 30.0%
TGTGTATATTGTAACATCTC+TGG - chr5_2:74789251-74789270 Msa0788300:intron 30.0%
GTGTATATTGTAACATCTCT+GGG - chr5_2:74789252-74789271 Msa0788300:intron 30.0%
CTTCCCTTAGGTATTTATAA+TGG - chr5_2:74789402-74789421 Msa0788300:intron 30.0%
!!! TCAGTTTTAGCTTTACCTTT+TGG - chr5_2:74789512-74789531 Msa0788300:intron 30.0%
CATAGACAATTGAAACCAAA+AGG + chr5_2:74789530-74789549 None:intergenic 30.0%
TTTAACGTAATGACATGTGT+CGG + chr5_2:74789723-74789742 None:intergenic 30.0%
AATTTCTATGATACAAGCAG+GGG + chr5_2:74789808-74789827 None:intergenic 30.0%
CAATTTCTATGATACAAGCA+GGG + chr5_2:74789809-74789828 None:intergenic 30.0%
TCAATTTCTATGATACAAGC+AGG + chr5_2:74789810-74789829 None:intergenic 30.0%
! CTGTCTTTGTATAGTTTTTC+AGG + chr5_2:74789838-74789857 None:intergenic 30.0%
AACCATGAAATATCACCAAA+GGG + chr5_2:74789897-74789916 None:intergenic 30.0%
ATATTTCATCTTCTTCTTGC+AGG - chr5_2:74789921-74789940 Msa0788300:CDS 30.0%
!! TGAAGTTTGTTGATGATGAA+TGG - chr5_2:74790051-74790070 Msa0788300:CDS 30.0%
!! GAAGTTTGTTGATGATGAAT+GGG - chr5_2:74790052-74790071 Msa0788300:CDS 30.0%
!! AAGTTTGTTGATGATGAATG+GGG - chr5_2:74790053-74790072 Msa0788300:CDS 30.0%
TCTGTTAGATTTGAAGATGA+TGG - chr5_2:74790218-74790237 Msa0788300:intron 30.0%
CTTACGATTATTATGAAGAC+TGG + chr5_2:74790273-74790292 None:intergenic 30.0%
TATCACCCCAAAAAAAGAAT+CGG + chr5_2:74790478-74790497 None:intergenic 30.0%
! CTTGCACTAATTTTGTTCTT+TGG - chr5_2:74790629-74790648 Msa0788300:intron 30.0%
CAAAATGCAGATACAAATCT+AGG + chr5_2:74791026-74791045 None:intergenic 30.0%
! GCATTTTGTCAATCAAATTG+TGG - chr5_2:74791038-74791057 Msa0788300:intron 30.0%
AGGTAATTTATAGTAATCGC+TGG + chr5_2:74791233-74791252 None:intergenic 30.0%
GCAATATTAGTTACAACAAG+AGG + chr5_2:74791253-74791272 None:intergenic 30.0%
GTGTACTTTCAAATTCATCT+GGG + chr5_2:74791281-74791300 None:intergenic 30.0%
! TGAAAGTACACGTATTATAG+GGG - chr5_2:74791290-74791309 Msa0788300:CDS 30.0%
TTGCTTAAAATCAAATGCTC+CGG + chr5_2:74791511-74791530 None:intergenic 30.0%
! GAATACAAGTCTAGGATAAT+GGG + chr5_2:74791575-74791594 None:intergenic 30.0%
! AGAATACAAGTCTAGGATAA+TGG + chr5_2:74791576-74791595 None:intergenic 30.0%
!!! CTTACTTTTTTGTGTGTATC+AGG - chr5_2:74791604-74791623 Msa0788300:intron 30.0%
!!! TACTTTTTTGTGTGTATCAG+GGG - chr5_2:74791606-74791625 Msa0788300:intron 30.0%
AAATGAAGCTTCCATATGAT+TGG - chr5_2:74791726-74791745 Msa0788300:intron 30.0%
AATGAAGCTTCCATATGATT+GGG - chr5_2:74791727-74791746 Msa0788300:intron 30.0%
AAAAAGAGAGGGAAGATTAA+TGG - chr5_2:74791832-74791851 Msa0788300:intron 30.0%
AAGTCATCAAATACATGTCT+TGG + chr5_2:74792049-74792068 None:intergenic 30.0%
! ATTTGGATTGGAAGTATAGT+AGG + chr5_2:74792168-74792187 None:intergenic 30.0%
GAATAAAAAACTGCCCAATT+CGG + chr5_2:74792194-74792213 None:intergenic 30.0%
ATAGTCAAAATATCGTGATC+AGG + chr5_2:74792408-74792427 None:intergenic 30.0%
!!! ATGGTCATTTTTCTTTTCCT+TGG - chr5_2:74792573-74792592 Msa0788300:intron 30.0%
ATAGTAATCACGAATTTCCA+AGG + chr5_2:74792593-74792612 None:intergenic 30.0%
CAAAGAAATACATAGGTGAT+AGG + chr5_2:74792653-74792672 None:intergenic 30.0%
CTATCACCTATGTATTTCTT+TGG - chr5_2:74792651-74792670 Msa0788300:intron 30.0%
AACATTCATGTTGTTATAGC+AGG - chr5_2:74792789-74792808 Msa0788300:CDS 30.0%
ACATTCATGTTGTTATAGCA+GGG - chr5_2:74792790-74792809 Msa0788300:CDS 30.0%
CACATACTGTGAATAAGTAT+TGG + chr5_2:74792820-74792839 None:intergenic 30.0%
TTGCTACTGCAATCTAAAAA+AGG + chr5_2:74792912-74792931 None:intergenic 30.0%
ATACAAGTACTCTATATGCT+AGG + chr5_2:74793049-74793068 None:intergenic 30.0%
ATGTAGAATCATGTAGAACT+AGG + chr5_2:74793090-74793109 None:intergenic 30.0%
!!! AGTTTTGAAAAAAAGGTCTG+CGG + chr5_2:74793193-74793212 None:intergenic 30.0%
!!! CTCTTAAAGGTGGAATTTTT+TGG + chr5_2:74793502-74793521 None:intergenic 30.0%
! AAAAATTCCACCTTTAAGAG+AGG - chr5_2:74793502-74793521 Msa0788300:intron 30.0%
!!! ATACGGTTTCTGTTACTTTT+TGG - chr5_2:74793527-74793546 Msa0788300:intron 30.0%
ATAGTAAAGCCACAATAGAA+TGG - chr5_2:74793698-74793717 Msa0788300:intron 30.0%
!! TGTTTTATTCTGTATACACC+AGG + chr5_2:74793745-74793764 None:intergenic 30.0%
! CTAGAGAAAGTGATGATGAA+AGG + chr5_2:74787481-74787500 None:intergenic 35.0%
TGAGATGAACTAGCTAAACT+TGG - chr5_2:74787882-74787901 Msa0788300:CDS 35.0%
!! CTTGGAAAATTGGTCTTTCT+TGG - chr5_2:74788315-74788334 Msa0788300:intron 35.0%
! CATTCAAGTTAGAGAGTGAA+GGG + chr5_2:74788377-74788396 None:intergenic 35.0%
! ACATTCAAGTTAGAGAGTGA+AGG + chr5_2:74788378-74788397 None:intergenic 35.0%
CACTCTCTAACTTGAATGTT+TGG - chr5_2:74788379-74788398 Msa0788300:intron 35.0%
TCTCTAACTTGAATGTTTGG+AGG - chr5_2:74788382-74788401 Msa0788300:intron 35.0%
CTCTAACTTGAATGTTTGGA+GGG - chr5_2:74788383-74788402 Msa0788300:intron 35.0%
TTTCTGCAACTATGACAGTT+TGG - chr5_2:74788406-74788425 Msa0788300:intron 35.0%
!! TGTAACTACTTGATTGGTCT+TGG - chr5_2:74788477-74788496 Msa0788300:intron 35.0%
TGTTAATCTCGATGCTTGTA+TGG - chr5_2:74788641-74788660 Msa0788300:CDS 35.0%
GTTAATCTCGATGCTTGTAT+GGG - chr5_2:74788642-74788661 Msa0788300:CDS 35.0%
! CATGGAATCCTATTCTGAAA+AGG + chr5_2:74788877-74788896 None:intergenic 35.0%
CTTCATCAAACGACTAAGAT+AGG + chr5_2:74788914-74788933 None:intergenic 35.0%
GTCGTTTGATGAAGATTAGA+CGG - chr5_2:74788920-74788939 Msa0788300:intron 35.0%
GTTGTTGGATGAAAATCAGA+TGG + chr5_2:74788990-74789009 None:intergenic 35.0%
! TATCTTGATGCAGCGAATTT+TGG - chr5_2:74789046-74789065 Msa0788300:intron 35.0%
! CAATAATGGGATTCAGGAAA+AGG + chr5_2:74789077-74789096 None:intergenic 35.0%
TTTCCTGAATCCCATTATTG+TGG - chr5_2:74789077-74789096 Msa0788300:intron 35.0%
TTCCTGAATCCCATTATTGT+GGG - chr5_2:74789078-74789097 Msa0788300:intron 35.0%
TACAGAACTCCCACAATAAT+GGG + chr5_2:74789090-74789109 None:intergenic 35.0%
ATGTCAGGACTGTTAAAACA+GGG + chr5_2:74789125-74789144 None:intergenic 35.0%
AATGTCAGGACTGTTAAAAC+AGG + chr5_2:74789126-74789145 None:intergenic 35.0%
TTTCTCAATGCCATCAACAA+GGG + chr5_2:74789301-74789320 None:intergenic 35.0%
! TTTTCTCAATGCCATCAACA+AGG + chr5_2:74789302-74789321 None:intergenic 35.0%
!! CATTGAGAAAAGCATTGTTC+AGG - chr5_2:74789311-74789330 Msa0788300:intron 35.0%
!! AGCATTTGTTTTCTTCCCTT+AGG - chr5_2:74789390-74789409 Msa0788300:intron 35.0%
GGGAACATCAATTTCTTATC+TGG + chr5_2:74789635-74789654 None:intergenic 35.0%
! CACTTAACCCTTTTGATGAA+AGG - chr5_2:74789668-74789687 Msa0788300:intron 35.0%
AGACACACCTTTCATCAAAA+GGG + chr5_2:74789678-74789697 None:intergenic 35.0%
ATTTCTATGATACAAGCAGG+GGG + chr5_2:74789807-74789826 None:intergenic 35.0%
AGAAAATGAGTGTTACGAGA+TGG - chr5_2:74789858-74789877 Msa0788300:intron 35.0%
ACCATGAAATATCACCAAAG+GGG + chr5_2:74789896-74789915 None:intergenic 35.0%
CAACCATGAAATATCACCAA+AGG + chr5_2:74789898-74789917 None:intergenic 35.0%
GCGAAAAAGTTCTGTAAGAA+AGG - chr5_2:74790193-74790212 Msa0788300:intron 35.0%
!! TATCCGTTGATTTGTTCACA+CGG + chr5_2:74790379-74790398 None:intergenic 35.0%
AAAAAGAATCGGTGTGTGAT+TGG + chr5_2:74790467-74790486 None:intergenic 35.0%
!!! TCACACACCGATTCTTTTTT+TGG - chr5_2:74790468-74790487 Msa0788300:CDS 35.0%
!!! CACACACCGATTCTTTTTTT+GGG - chr5_2:74790469-74790488 Msa0788300:CDS 35.0%
!!! ACACACCGATTCTTTTTTTG+GGG - chr5_2:74790470-74790489 Msa0788300:CDS 35.0%
TCTATCTGTCTTTGTTGCAT+TGG - chr5_2:74790593-74790612 Msa0788300:intron 35.0%
! GCACTAATTTTGTTCTTTGG+TGG - chr5_2:74790632-74790651 Msa0788300:intron 35.0%
TCCTCTTAAAGTCTCAATGT+AGG - chr5_2:74790723-74790742 Msa0788300:intron 35.0%
TGGTACAGATCATGAATTAC+TGG - chr5_2:74790902-74790921 Msa0788300:intron 35.0%
! TCTAGCAACACTTGAAGTTT+TGG + chr5_2:74790970-74790989 None:intergenic 35.0%
!! AGGTTTGTTAACCTGTCTAA+GGG + chr5_2:74791006-74791025 None:intergenic 35.0%
!! TAGGTTTGTTAACCTGTCTA+AGG + chr5_2:74791007-74791026 None:intergenic 35.0%
TAATCCAGTGTCTGTACAAA+AGG + chr5_2:74791090-74791109 None:intergenic 35.0%
CGTGTACTTTCAAATTCATC+TGG + chr5_2:74791282-74791301 None:intergenic 35.0%
GAGACAGTTTAAAAAAGCAG+TGG - chr5_2:74791314-74791333 Msa0788300:CDS 35.0%
TGCTTAAAATCAAATGCTCC+GGG + chr5_2:74791510-74791529 None:intergenic 35.0%
!! GGAGCATTTGATTTTAAGCA+AGG - chr5_2:74791510-74791529 Msa0788300:intron 35.0%
! TTTTAAGCAAGGTGATGATC+AGG - chr5_2:74791521-74791540 Msa0788300:intron 35.0%
!! TAGGATAATGGGTAAGCATA+TGG + chr5_2:74791564-74791583 None:intergenic 35.0%
! CAGGCGTTTTCAGTAAATTA+CGG + chr5_2:74791652-74791671 None:intergenic 35.0%
GTATCAAGCAAAATAGGCTT+TGG + chr5_2:74791701-74791720 None:intergenic 35.0%
! AAGCCTATTTTGCTTGATAC+TGG - chr5_2:74791701-74791720 Msa0788300:intron 35.0%
TCACCAGTATCAAGCAAAAT+AGG + chr5_2:74791707-74791726 None:intergenic 35.0%
TAACTTACAGCCCAATCATA+TGG + chr5_2:74791740-74791759 None:intergenic 35.0%
AGGGAAGATTAATGGTATAG+AGG - chr5_2:74791840-74791859 Msa0788300:intron 35.0%
!!! GTATAGAGGCTGTTTTTAAG+AGG - chr5_2:74791854-74791873 Msa0788300:intron 35.0%
TTTATTCTTAGTGTACCAGG+AGG - chr5_2:74792207-74792226 Msa0788300:CDS 35.0%
AAATTAAGAACCATACCTCC+TGG + chr5_2:74792225-74792244 None:intergenic 35.0%
! ACAAGACATTTGGAGTACAT+TGG + chr5_2:74792530-74792549 None:intergenic 35.0%
AAGCACCCAAAGAAATACAT+AGG + chr5_2:74792660-74792679 None:intergenic 35.0%
TCTGACAGAATTCACAACAA+TGG - chr5_2:74792704-74792723 Msa0788300:intron 35.0%
!! GAAGGTCTGTCATTTCTTTT+AGG + chr5_2:74793027-74793046 None:intergenic 35.0%
AAGTACTCTATATGCTAGGA+AGG + chr5_2:74793045-74793064 None:intergenic 35.0%
AAAATGTACCTTCGGTCATA+AGG + chr5_2:74793573-74793592 None:intergenic 35.0%
AAATCATCATCGTCATAAGC+AGG + chr5_2:74793634-74793653 None:intergenic 35.0%
! ATTTTTGTGTGCGCTTCAAA+TGG - chr5_2:74793650-74793669 Msa0788300:intron 35.0%
!! CTATGAGTACTGAGTTTGAA+AGG + chr5_2:74793682-74793701 None:intergenic 35.0%
TGGTATTCTCCATTCTATTG+TGG + chr5_2:74793710-74793729 None:intergenic 35.0%
AATAGAATGGAGAATACCAC+AGG - chr5_2:74793711-74793730 Msa0788300:intron 35.0%
!!! AAAACATTTTGGAGCTGCAA+AGG - chr5_2:74793759-74793778 Msa0788300:intron 35.0%
!!! AAACATTTTGGAGCTGCAAA+GGG - chr5_2:74793760-74793779 Msa0788300:intron 35.0%
CATTTGTAGTAGCACACTAA+AGG - chr5_2:74793824-74793843 Msa0788300:five_prime_UTR 35.0%
GATTCATTCTACACGTTCAA+TGG - chr5_2:74793861-74793880 Msa0788300:five_prime_UTR 35.0%
! TTAAATCTTTTTGTGGGCCT+TGG - chr5_2:74794049-74794068 Msa0788300:five_prime_UTR 35.0%
! AGTGATGATGAAAGGGAAAG+AGG + chr5_2:74787473-74787492 None:intergenic 40.0%
ATCACAACTTTACATCTGGG+TGG - chr5_2:74787599-74787618 Msa0788300:CDS 40.0%
GCAGAGAATTCTAATTTGGG+AGG + chr5_2:74787734-74787753 None:intergenic 40.0%
CGTAATACCCAAATTAGTCG+CGG - chr5_2:74788069-74788088 Msa0788300:CDS 40.0%
TCAATGTCCGCGACTAATTT+GGG + chr5_2:74788079-74788098 None:intergenic 40.0%
TGAAGGGAAATGAGAAGAAC+CGG - chr5_2:74788287-74788306 Msa0788300:intron 40.0%
! ACCAATTTTCCAAGCTTAGC+CGG + chr5_2:74788309-74788328 None:intergenic 40.0%
CTTGGAAGCTATGACATTAC+CGG - chr5_2:74788495-74788514 Msa0788300:intron 40.0%
ATCATGTTAACATCAGCTGC+AGG + chr5_2:74788522-74788541 None:intergenic 40.0%
TGCAGCTGATGTTAACATGA+TGG - chr5_2:74788521-74788540 Msa0788300:intron 40.0%
GCAGCTGATGTTAACATGAT+GGG - chr5_2:74788522-74788541 Msa0788300:intron 40.0%
! TTTTATTGTTGCCGAGCCTA+AGG - chr5_2:74788602-74788621 Msa0788300:CDS 40.0%
TTTATTGTTGCCGAGCCTAA+GGG - chr5_2:74788603-74788622 Msa0788300:CDS 40.0%
! AACACTAGCCTATTACCCTT+AGG + chr5_2:74788621-74788640 None:intergenic 40.0%
TACTTGAGAGGCTTAAAGCA+AGG - chr5_2:74788688-74788707 Msa0788300:CDS 40.0%
TAGGCAATTGCGTGAATACA+TGG + chr5_2:74788895-74788914 None:intergenic 40.0%
AATGGGATTCAGGAAAAGGT+TGG + chr5_2:74789073-74789092 None:intergenic 40.0%
CTACAGAACTCCCACAATAA+TGG + chr5_2:74789091-74789110 None:intergenic 40.0%
TGTCAGGACTGTTAAAACAG+GGG + chr5_2:74789124-74789143 None:intergenic 40.0%
TCATTTGATGCCCTTGTTGA+TGG - chr5_2:74789288-74789307 Msa0788300:intron 40.0%
TGACAAATATTGATCCTGGG+CGG + chr5_2:74789350-74789369 None:intergenic 40.0%
!!! TCTGGTTTTAGTCAAGACTG+TGG + chr5_2:74789617-74789636 None:intergenic 40.0%
AAAAGGGTTAAGTGCTACAG+AGG + chr5_2:74789662-74789681 None:intergenic 40.0%
CAGACACACCTTTCATCAAA+AGG + chr5_2:74789679-74789698 None:intergenic 40.0%
!! CTTTTGATGAAAGGTGTGTC+TGG - chr5_2:74789677-74789696 Msa0788300:intron 40.0%
TTTCTATGATACAAGCAGGG+GGG + chr5_2:74789806-74789825 None:intergenic 40.0%
CATGAAATATCACCAAAGGG+GGG + chr5_2:74789894-74789913 None:intergenic 40.0%
CCATGAAATATCACCAAAGG+GGG + chr5_2:74789895-74789914 None:intergenic 40.0%
!! TTCAACTGGTTTGCTACTCA+TGG - chr5_2:74790089-74790108 Msa0788300:CDS 40.0%
TTGCCGTGTGAACAAATCAA+CGG - chr5_2:74790373-74790392 Msa0788300:CDS 40.0%
GTTACACAACTTCACAGTTC+TGG - chr5_2:74790676-74790695 Msa0788300:intron 40.0%
GCCTACATTGAGACTTTAAG+AGG + chr5_2:74790727-74790746 None:intergenic 40.0%
! TCAATGTAGGCTGACTTCAA+TGG - chr5_2:74790736-74790755 Msa0788300:intron 40.0%
! GCTGACTTCAATGGAATTGT+CGG - chr5_2:74790745-74790764 Msa0788300:intron 40.0%
GATGTTAGTCCGAATGTACT+TGG - chr5_2:74791062-74791081 Msa0788300:intron 40.0%
CAAAAGGCTCCAAGTACATT+CGG + chr5_2:74791074-74791093 None:intergenic 40.0%
ACTTCAATCACAGCACATGT+GGG - chr5_2:74791117-74791136 Msa0788300:intron 40.0%
GGGAAGAATGAGTTATGCTA+TGG - chr5_2:74791140-74791159 Msa0788300:intron 40.0%
AGAATGAGTTATGCTATGGC+CGG - chr5_2:74791144-74791163 Msa0788300:intron 40.0%
TAAATAATTACCCAGGTCCC+CGG + chr5_2:74791166-74791185 None:intergenic 40.0%
AAAGCAGTGGAGCTATTCAA+TGG - chr5_2:74791327-74791346 Msa0788300:CDS 40.0%
GAGCTTGGAAAAATCTAGGA+AGG + chr5_2:74791394-74791413 None:intergenic 40.0%
AGAAACATTTACCTCGAGCT+TGG + chr5_2:74791409-74791428 None:intergenic 40.0%
!! GAGGTAAATGTTTCTAGCAG+TGG - chr5_2:74791414-74791433 Msa0788300:CDS 40.0%
TTTACTGAAAACGCCTGACA+AGG - chr5_2:74791655-74791674 Msa0788300:intron 40.0%
CCATATAACTAATCTGAGCC+TGG + chr5_2:74791801-74791820 None:intergenic 40.0%
! CCAGGCTCAGATTAGTTATA+TGG - chr5_2:74791798-74791817 Msa0788300:intron 40.0%
ATTGCATGACCTGATCTTCT+TGG - chr5_2:74791933-74791952 Msa0788300:intron 40.0%
CAATCCAAATCCTCCGAATT+GGG - chr5_2:74792178-74792197 Msa0788300:CDS 40.0%
TAAAAAACTGCCCAATTCGG+AGG + chr5_2:74792191-74792210 None:intergenic 40.0%
ACAGACTACTCATTAGACCA+AGG + chr5_2:74792317-74792336 None:intergenic 40.0%
TGAATTGCACAAAGTAGTGC+TGG + chr5_2:74792438-74792457 None:intergenic 40.0%
ACATAGGTGATAGGACAACT+TGG + chr5_2:74792644-74792663 None:intergenic 40.0%
ACAGAATTCACAACAATGGC+TGG - chr5_2:74792708-74792727 Msa0788300:intron 40.0%
CAGAATTCACAACAATGGCT+GGG - chr5_2:74792709-74792728 Msa0788300:intron 40.0%
! GAGGTCAGTTGTAACTTTTG+TGG - chr5_2:74792873-74792892 Msa0788300:CDS 40.0%
! TTTGTATTGGCACACAGAGA+TGG - chr5_2:74792998-74793017 Msa0788300:CDS 40.0%
ATGTATGCACTCAATGTGTG+TGG + chr5_2:74793316-74793335 None:intergenic 40.0%
CACATTGAGTGCATACATTC+AGG - chr5_2:74793318-74793337 Msa0788300:intron 40.0%
CTTACTAACACCAGTAGTGA+TGG - chr5_2:74793429-74793448 Msa0788300:intron 40.0%
! CACCTTTAAGAGAGGTGATA+CGG - chr5_2:74793510-74793529 Msa0788300:intron 40.0%
AACCGTATCACCTCTCTTAA+AGG + chr5_2:74793515-74793534 None:intergenic 40.0%
CACCAGAGAAAATGTACCTT+CGG + chr5_2:74793581-74793600 None:intergenic 40.0%
GAGCTGCAAAGGGTTTATTA+GGG - chr5_2:74793770-74793789 Msa0788300:intron 40.0%
TGTAGTAGCACACTAAAGGA+AGG - chr5_2:74793828-74793847 Msa0788300:five_prime_UTR 40.0%
GTAGTAGCACACTAAAGGAA+GGG - chr5_2:74793829-74793848 Msa0788300:five_prime_UTR 40.0%
TCTGGATAACAAAGGACATG+TGG + chr5_2:74793977-74793996 None:intergenic 40.0%
AAGACAGACAGACAGAGTTG+TGG + chr5_2:74787430-74787449 None:intergenic 45.0%
TGATGAAAGGGAAAGAGGAG+TGG + chr5_2:74787468-74787487 None:intergenic 45.0%
! ATGGGAACTGGGAAGTTTTG+TGG - chr5_2:74787839-74787858 Msa0788300:CDS 45.0%
!! TGGGAACTGGGAAGTTTTGT+GGG - chr5_2:74787840-74787859 Msa0788300:CDS 45.0%
GTCAATGTCCGCGACTAATT+TGG + chr5_2:74788080-74788099 None:intergenic 45.0%
TGAGCAGCGAGAAATTTCTG+AGG - chr5_2:74788193-74788212 Msa0788300:intron 45.0%
ACCGGCTAAGCTTGGAAAAT+TGG - chr5_2:74788305-74788324 Msa0788300:intron 45.0%
AACACAGAGCAGATTGCATC+TGG - chr5_2:74788552-74788571 Msa0788300:intron 45.0%
ACACAGAGCAGATTGCATCT+GGG - chr5_2:74788553-74788572 Msa0788300:intron 45.0%
! TTGCATCTGGGGTTCACTTT+AGG - chr5_2:74788565-74788584 Msa0788300:CDS 45.0%
TAGCCTATTACCCTTAGGCT+CGG + chr5_2:74788616-74788635 None:intergenic 45.0%
TCATGAAGTCAAGCTCACGT+AGG + chr5_2:74789025-74789044 None:intergenic 45.0%
! CTCCCACAATAATGGGATTC+AGG + chr5_2:74789083-74789102 None:intergenic 45.0%
!! CAACAAGGGCATCAAATGAC+TGG + chr5_2:74789287-74789306 None:intergenic 45.0%
!! AGTATCGACGTGTTAGTGTC+TGG - chr5_2:74789751-74789770 Msa0788300:CDS 45.0%
TTCTATGATACAAGCAGGGG+GGG + chr5_2:74789805-74789824 None:intergenic 45.0%
GGTTAAATTTCTCCCCCCTT+TGG - chr5_2:74789879-74789898 Msa0788300:intron 45.0%
! CCCCCTTTGGTGATATTTCA+TGG - chr5_2:74789892-74789911 Msa0788300:CDS 45.0%
TATTTGCTTCTCTCTGCAGC+CGG + chr5_2:74789999-74790018 None:intergenic 45.0%
! TGATGATGAATGGGGTCCTT+CGG - chr5_2:74790061-74790080 Msa0788300:CDS 45.0%
CTGCACGATTTATGGAAGAC+TGG - chr5_2:74790165-74790184 Msa0788300:intron 45.0%
!!! TTTTGGGGTGATAAGCAGTG+TGG - chr5_2:74790485-74790504 Msa0788300:CDS 45.0%
!! ACACTTGAAGTTTTGGTCGC+TGG + chr5_2:74790963-74790982 None:intergenic 45.0%
! AGTGTTGCTAGACGTGTAAG+AGG - chr5_2:74790978-74790997 Msa0788300:intron 45.0%
GTGCTGTGATTGAAGTCACA+AGG + chr5_2:74791113-74791132 None:intergenic 45.0%
GACTTCAATCACAGCACATG+TGG - chr5_2:74791116-74791135 Msa0788300:intron 45.0%
CTTCAATCACAGCACATGTG+GGG - chr5_2:74791118-74791137 Msa0788300:intron 45.0%
TTCAATCACAGCACATGTGG+GGG - chr5_2:74791119-74791138 Msa0788300:intron 45.0%
GAATGAGTTATGCTATGGCC+GGG - chr5_2:74791145-74791164 Msa0788300:intron 45.0%
AATGAGTTATGCTATGGCCG+GGG - chr5_2:74791146-74791165 Msa0788300:CDS 45.0%
CCTCGAGCTTGGAAAAATCT+AGG + chr5_2:74791398-74791417 None:intergenic 45.0%
! CCTAGATTTTTCCAAGCTCG+AGG - chr5_2:74791395-74791414 Msa0788300:CDS 45.0%
TTCTAGCAGTGGAGCTTCTA+AGG - chr5_2:74791425-74791444 Msa0788300:CDS 45.0%
ATCCAAATCCCATTGCAGCA+GGG + chr5_2:74791464-74791483 None:intergenic 45.0%
AATCCAAATCCCATTGCAGC+AGG + chr5_2:74791465-74791484 None:intergenic 45.0%
!! ATGGGATTTGGATTTGCTGC+TGG - chr5_2:74791471-74791490 Msa0788300:CDS 45.0%
TTTGCTGCTGGAACAACTGA+TGG - chr5_2:74791483-74791502 Msa0788300:intron 45.0%
TACGGACCAGTTTCCAGAAA+GGG + chr5_2:74791634-74791653 None:intergenic 45.0%
TTACGGACCAGTTTCCAGAA+AGG + chr5_2:74791635-74791654 None:intergenic 45.0%
CAGGCTATTTGTTCCTTGTC+AGG + chr5_2:74791671-74791690 None:intergenic 45.0%
TGTCTTATAGTCTCCACTCC+AGG - chr5_2:74791780-74791799 Msa0788300:intron 45.0%
TAACTAATCTGAGCCTGGAG+TGG + chr5_2:74791796-74791815 None:intergenic 45.0%
! TGGAAGTATAGTAGGCTGCA+AGG + chr5_2:74792160-74792179 None:intergenic 45.0%
CCAATTCGGAGGATTTGGAT+TGG + chr5_2:74792180-74792199 None:intergenic 45.0%
CCAATCCAAATCCTCCGAAT+TGG - chr5_2:74792177-74792196 Msa0788300:CDS 45.0%
TCTTAGTGTACCAGGAGGTA+TGG - chr5_2:74792212-74792231 Msa0788300:CDS 45.0%
! GTTTCAAGTGTCAACGACCT+TGG - chr5_2:74792297-74792316 Msa0788300:intron 45.0%
AATTCACAACAATGGCTGGG+AGG - chr5_2:74792712-74792731 Msa0788300:intron 45.0%
ACAGTATGTGACCACATACG+AGG - chr5_2:74792830-74792849 Msa0788300:CDS 45.0%
GTACGAGGTGCAAAGATATG+AGG - chr5_2:74792854-74792873 Msa0788300:CDS 45.0%
TGCTGCCCATGAAGCAATAT+TGG - chr5_2:74793115-74793134 Msa0788300:five_prime_UTR 45.0%
GCTGCCCATGAAGCAATATT+GGG - chr5_2:74793116-74793135 Msa0788300:five_prime_UTR 45.0%
GCCTCCCAATATTGCTTCAT+GGG + chr5_2:74793123-74793142 None:intergenic 45.0%
TGCCTCCCAATATTGCTTCA+TGG + chr5_2:74793124-74793143 None:intergenic 45.0%
! TAGGGTGCTTCCACACTTTA+TGG - chr5_2:74793289-74793308 Msa0788300:intron 45.0%
TGTGTGTGGACCATAAAGTG+TGG + chr5_2:74793302-74793321 None:intergenic 45.0%
GTAAGCCTATTTGCTTGTCC+AGG + chr5_2:74793414-74793433 None:intergenic 45.0%
! CTAACACCAGTAGTGATGGA+TGG - chr5_2:74793433-74793452 Msa0788300:intron 45.0%
CGTATCACCTCTCTTAAAGG+TGG + chr5_2:74793512-74793531 None:intergenic 45.0%
CGGTCATAAGGTCATTTCGA+GGG + chr5_2:74793561-74793580 None:intergenic 45.0%
TCGGTCATAAGGTCATTTCG+AGG + chr5_2:74793562-74793581 None:intergenic 45.0%
CGAAATGACCTTATGACCGA+AGG - chr5_2:74793562-74793581 Msa0788300:intron 45.0%
!! GACCGAAGGTACATTTTCTC+TGG - chr5_2:74793576-74793595 Msa0788300:intron 45.0%
!! CGAAGGTACATTTTCTCTGG+TGG - chr5_2:74793579-74793598 Msa0788300:intron 45.0%
TCTCTGGTGGAATATCTCCA+AGG - chr5_2:74793592-74793611 Msa0788300:intron 45.0%
CTCTGGTGGAATATCTCCAA+GGG - chr5_2:74793593-74793612 Msa0788300:intron 45.0%
ATCTCCAAGGGAAGGATACT+TGG - chr5_2:74793605-74793624 Msa0788300:intron 45.0%
TCTCCAAGGGAAGGATACTT+GGG - chr5_2:74793606-74793625 Msa0788300:intron 45.0%
GGAGCTGCAAAGGGTTTATT+AGG - chr5_2:74793769-74793788 Msa0788300:intron 45.0%
! GGGTCAATTCGTCACTTTAC+AGG - chr5_2:74793790-74793809 Msa0788300:intron 45.0%
!! GTTATTATTAATATATAATT+TGG - chr5_2:74793895-74793914 Msa0788300:five_prime_UTR 5.0%
TGAAAGGGAAAGAGGAGTGG+AGG + chr5_2:74787465-74787484 None:intergenic 50.0%
CCAAAGCTTGCAGCAAGTGT+GGG + chr5_2:74787547-74787566 None:intergenic 50.0%
ACCAAAGCTTGCAGCAAGTG+TGG + chr5_2:74787548-74787567 None:intergenic 50.0%
TGAGAAGAACCGGCTAAGCT+TGG - chr5_2:74788297-74788316 Msa0788300:intron 50.0%
GTTAACATCAGCTGCAGGAC+CGG + chr5_2:74788517-74788536 None:intergenic 50.0%
CACAGAGCAGATTGCATCTG+GGG - chr5_2:74788554-74788573 Msa0788300:intron 50.0%
!! CTGGGGTTCACTTTAGGTTG+CGG - chr5_2:74788571-74788590 Msa0788300:CDS 50.0%
TTGCCGAGCCTAAGGGTAAT+AGG - chr5_2:74788610-74788629 Msa0788300:CDS 50.0%
! AGGCATGGGATAACGGTTGT+TGG + chr5_2:74789005-74789024 None:intergenic 50.0%
CTCACGTAGGCATGGGATAA+CGG + chr5_2:74789012-74789031 None:intergenic 50.0%
AGTCAAGCTCACGTAGGCAT+GGG + chr5_2:74789019-74789038 None:intergenic 50.0%
AAGTCAAGCTCACGTAGGCA+TGG + chr5_2:74789020-74789039 None:intergenic 50.0%
AGTGGAATTCACACCCATGC+TGG - chr5_2:74789204-74789223 Msa0788300:intron 50.0%
ACATACTGAAGATACCCCCC+AGG + chr5_2:74789231-74789250 None:intergenic 50.0%
TTAAGTGCTACAGAGGTCGG+GGG + chr5_2:74789655-74789674 None:intergenic 50.0%
GTTAAGTGCTACAGAGGTCG+GGG + chr5_2:74789656-74789675 None:intergenic 50.0%
GGTTAAGTGCTACAGAGGTC+GGG + chr5_2:74789657-74789676 None:intergenic 50.0%
GGGTTAAGTGCTACAGAGGT+CGG + chr5_2:74789658-74789677 None:intergenic 50.0%
!! TGTCGGTGTCGTATTGGTCT+TGG + chr5_2:74789706-74789725 None:intergenic 50.0%
!! GACATGTGTCGGTGTCGTAT+TGG + chr5_2:74789712-74789731 None:intergenic 50.0%
ATCGACGTGTTAGTGTCTGG+TGG - chr5_2:74789754-74789773 Msa0788300:CDS 50.0%
! GCAGGAGAGCTTTTAGATGC+TGG - chr5_2:74789939-74789958 Msa0788300:CDS 50.0%
GGATTGTTGAGGTAAGCGCT+GGG + chr5_2:74789978-74789997 None:intergenic 50.0%
CAGCGCTTACCTCAACAATC+CGG - chr5_2:74789977-74789996 Msa0788300:CDS 50.0%
GATGATGAATGGGGTCCTTC+GGG - chr5_2:74790062-74790081 Msa0788300:CDS 50.0%
AACCAGTTGAAGCTTCCCGA+AGG + chr5_2:74790080-74790099 None:intergenic 50.0%
! CAACTTCACAGTTCTGGCGT+TGG - chr5_2:74790682-74790701 Msa0788300:intron 50.0%
GCATCATTCCAATCTCCTCC+CGG - chr5_2:74790933-74790952 Msa0788300:intron 50.0%
!! AGTTTTGGTCGCTGGTCTAC+CGG + chr5_2:74790955-74790974 None:intergenic 50.0%
!! TGTAAGAGGTGCCCTTAGAC+AGG - chr5_2:74790992-74791011 Msa0788300:intron 50.0%
! GGAGCCTTTTGTACAGACAC+TGG - chr5_2:74791083-74791102 Msa0788300:intron 50.0%
TCAATCACAGCACATGTGGG+GGG - chr5_2:74791120-74791139 Msa0788300:intron 50.0%
AAAGACATGCCCTGCTGCAA+TGG - chr5_2:74791452-74791471 Msa0788300:CDS 50.0%
AAGACATGCCCTGCTGCAAT+GGG - chr5_2:74791453-74791472 Msa0788300:CDS 50.0%
TGTATCAGGGGAACCCTTTC+TGG - chr5_2:74791618-74791637 Msa0788300:intron 50.0%
! AATAGGCTTTGGCTGCTGAC+AGG + chr5_2:74791690-74791709 None:intergenic 50.0%
GTGGACAAGCCAAGAAGATC+AGG + chr5_2:74791945-74791964 None:intergenic 50.0%
ACTGCCCAATTCGGAGGATT+TGG + chr5_2:74792185-74792204 None:intergenic 50.0%
GCAGTGAAGACAGTGCTAAG+CGG - chr5_2:74792747-74792766 Msa0788300:CDS 50.0%
CAGTGAAGACAGTGCTAAGC+GGG - chr5_2:74792748-74792767 Msa0788300:CDS 50.0%
AGTGAAGACAGTGCTAAGCG+GGG - chr5_2:74792749-74792768 Msa0788300:CDS 50.0%
CTAAGCGGGGACAAAAGCTT+AGG - chr5_2:74792762-74792781 Msa0788300:CDS 50.0%
ATTGCTTCATGGGCAGCACA+AGG + chr5_2:74793113-74793132 None:intergenic 50.0%
GCCCATGAAGCAATATTGGG+AGG - chr5_2:74793119-74793138 Msa0788300:five_prime_UTR 50.0%
CTTGCACACGCTCTCATCAA+CGG - chr5_2:74793352-74793371 Msa0788300:intron 50.0%
ATTTGCTTGTCCAGGAGGTC+TGG + chr5_2:74793406-74793425 None:intergenic 50.0%
GACCTCCTGGACAAGCAAAT+AGG - chr5_2:74793406-74793425 Msa0788300:intron 50.0%
AGCCTATTTGCTTGTCCAGG+AGG + chr5_2:74793411-74793430 None:intergenic 50.0%
!! ACCCCTCTTGGTGCAAGTTT+TGG - chr5_2:74793457-74793476 Msa0788300:intron 50.0%
CCCAAAACTTGCACCAAGAG+GGG + chr5_2:74793461-74793480 None:intergenic 50.0%
!! CCCCTCTTGGTGCAAGTTTT+GGG - chr5_2:74793458-74793477 Msa0788300:intron 50.0%
CCCCAAAACTTGCACCAAGA+GGG + chr5_2:74793462-74793481 None:intergenic 50.0%
!! CCCTCTTGGTGCAAGTTTTG+GGG - chr5_2:74793459-74793478 Msa0788300:intron 50.0%
TCCCCAAAACTTGCACCAAG+AGG + chr5_2:74793463-74793482 None:intergenic 50.0%
GGTGGAATATCTCCAAGGGA+AGG - chr5_2:74793597-74793616 Msa0788300:intron 50.0%
GAACCCAAGTATCCTTCCCT+TGG + chr5_2:74793612-74793631 None:intergenic 50.0%
GTGTGCGCTTCAAATGGTCA+AGG - chr5_2:74793656-74793675 Msa0788300:intron 50.0%
ATACCACAGGATGTAGCTCC+TGG - chr5_2:74793724-74793743 Msa0788300:intron 50.0%
GGAAAGAGGAGTGGAGGAAG+GGG + chr5_2:74787459-74787478 None:intergenic 55.0%
GGGAAAGAGGAGTGGAGGAA+GGG + chr5_2:74787460-74787479 None:intergenic 55.0%
AGGGAAAGAGGAGTGGAGGA+AGG + chr5_2:74787461-74787480 None:intergenic 55.0%
! CCCACACTTGCTGCAAGCTT+TGG - chr5_2:74787544-74787563 Msa0788300:three_prime_UTR 55.0%
ATTCACACCCATGCTGGTCC+TGG - chr5_2:74789210-74789229 Msa0788300:CDS 55.0%
TTCACACCCATGCTGGTCCT+GGG - chr5_2:74789211-74789230 Msa0788300:CDS 55.0%
GCACATGAAAATCTCCGCCC+AGG - chr5_2:74789333-74789352 Msa0788300:intron 55.0%
CGGATTGTTGAGGTAAGCGC+TGG + chr5_2:74789979-74789998 None:intergenic 55.0%
TCTCTGCAGCCGGATTGTTG+AGG + chr5_2:74789989-74790008 None:intergenic 55.0%
GTCCTTCGGGAAGCTTCAAC+TGG - chr5_2:74790075-74790094 Msa0788300:CDS 55.0%
!! GGGTGCTGCTGCACGATTTA+TGG - chr5_2:74790157-74790176 Msa0788300:intron 55.0%
!! GTTTTGGTCGCTGGTCTACC+GGG + chr5_2:74790954-74790973 None:intergenic 55.0%
TGCCCTGCTGCAATGGGATT+TGG - chr5_2:74791459-74791478 Msa0788300:CDS 55.0%
! GCTGGAACAACTGATGGACC+CGG - chr5_2:74791489-74791508 Msa0788300:intron 55.0%
! GGGGAACCCTTTCTGGAAAC+TGG - chr5_2:74791625-74791644 Msa0788300:intron 55.0%
TCACAACAATGGCTGGGAGG+CGG - chr5_2:74792715-74792734 Msa0788300:intron 55.0%
! GACCACATACGAGGAGTACG+AGG - chr5_2:74792839-74792858 Msa0788300:CDS 55.0%
CACCTCGTACTCCTCGTATG+TGG + chr5_2:74792844-74792863 None:intergenic 55.0%
AACGGCCAGCCTGTAGAATC+AGG - chr5_2:74793370-74793389 Msa0788300:intron 55.0%
GGGGTTCCATCCATCACTAC+TGG + chr5_2:74793442-74793461 None:intergenic 55.0%
!! GTGATGGATGGAACCCCTCT+TGG - chr5_2:74793445-74793464 Msa0788300:intron 55.0%
ACACCAGGAGCTACATCCTG+TGG + chr5_2:74793730-74793749 None:intergenic 55.0%
TCACACCCATGCTGGTCCTG+GGG - chr5_2:74789212-74789231 Msa0788300:CDS 60.0%
ATACCCCCCAGGACCAGCAT+GGG + chr5_2:74789220-74789239 None:intergenic 60.0%
CTGGTCTACCGGGAGGAGAT+TGG + chr5_2:74790944-74790963 None:intergenic 60.0%
TTATGCTATGGCCGGGGACC+TGG - chr5_2:74791152-74791171 Msa0788300:CDS 60.0%
TATGCTATGGCCGGGGACCT+GGG - chr5_2:74791153-74791172 Msa0788300:CDS 60.0%
GGTTGCGGGCCTGATTCTAC+AGG + chr5_2:74793382-74793401 None:intergenic 60.0%
TCCAGGAGGTCTGGTGGTTG+CGG + chr5_2:74793397-74793416 None:intergenic 60.0%
TGCTTGTCCAGGAGGTCTGG+TGG + chr5_2:74793403-74793422 None:intergenic 60.0%
CACACCCATGCTGGTCCTGG+GGG - chr5_2:74789213-74789232 Msa0788300:CDS 65.0%
ACACCCATGCTGGTCCTGGG+GGG - chr5_2:74789214-74789233 Msa0788300:CDS 65.0%
GATACCCCCCAGGACCAGCA+TGG + chr5_2:74789221-74789240 None:intergenic 65.0%
! TTGGTCGCTGGTCTACCGGG+AGG + chr5_2:74790951-74790970 None:intergenic 65.0%
GCGGGCCTGATTCTACAGGC+TGG + chr5_2:74793378-74793397 None:intergenic 65.0%
CCAGGAGGTCTGGTGGTTGC+GGG + chr5_2:74793396-74793415 None:intergenic 65.0%
CCCGCAACCACCAGACCTCC+TGG - chr5_2:74793393-74793412 Msa0788300:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 74787359 74794074 74787359 ID=Msa0788300;Name=Msa0788300
chr5_2 mRNA 74787359 74794074 74787359 ID=Msa0788300-mRNA-1;Parent=Msa0788300;Name=Msa0788300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=336|1|1|1|0.88|0.8|10|231|778
chr5_2 exon 74787359 74788141 74787359 ID=Msa0788300-mRNA-1:exon:22886;Parent=Msa0788300-mRNA-1
chr5_2 exon 74788558 74788721 74788558 ID=Msa0788300-mRNA-1:exon:22885;Parent=Msa0788300-mRNA-1
chr5_2 exon 74789205 74789268 74789205 ID=Msa0788300-mRNA-1:exon:22884;Parent=Msa0788300-mRNA-1
chr5_2 exon 74789682 74789807 74789682 ID=Msa0788300-mRNA-1:exon:22883;Parent=Msa0788300-mRNA-1
chr5_2 exon 74789891 74790158 74789891 ID=Msa0788300-mRNA-1:exon:22882;Parent=Msa0788300-mRNA-1
chr5_2 exon 74790259 74790523 74790259 ID=Msa0788300-mRNA-1:exon:22881;Parent=Msa0788300-mRNA-1
chr5_2 exon 74791146 74791490 74791146 ID=Msa0788300-mRNA-1:exon:22880;Parent=Msa0788300-mRNA-1
chr5_2 exon 74792058 74792266 74792058 ID=Msa0788300-mRNA-1:exon:22879;Parent=Msa0788300-mRNA-1
chr5_2 exon 74792724 74793141 74792724 ID=Msa0788300-mRNA-1:exon:22878;Parent=Msa0788300-mRNA-1
chr5_2 exon 74793813 74794074 74793813 ID=Msa0788300-mRNA-1:exon:22877;Parent=Msa0788300-mRNA-1
chr5_2 five_prime_UTR 74793813 74794074 74793813 ID=Msa0788300-mRNA-1:five_prime_utr;Parent=Msa0788300-mRNA-1
chr5_2 five_prime_UTR 74793068 74793141 74793068 ID=Msa0788300-mRNA-1:five_prime_utr;Parent=Msa0788300-mRNA-1
chr5_2 CDS 74792724 74793067 74792724 ID=Msa0788300-mRNA-1:cds;Parent=Msa0788300-mRNA-1
chr5_2 CDS 74792058 74792266 74792058 ID=Msa0788300-mRNA-1:cds;Parent=Msa0788300-mRNA-1
chr5_2 CDS 74791146 74791490 74791146 ID=Msa0788300-mRNA-1:cds;Parent=Msa0788300-mRNA-1
chr5_2 CDS 74790259 74790523 74790259 ID=Msa0788300-mRNA-1:cds;Parent=Msa0788300-mRNA-1
chr5_2 CDS 74789891 74790158 74789891 ID=Msa0788300-mRNA-1:cds;Parent=Msa0788300-mRNA-1
chr5_2 CDS 74789682 74789807 74789682 ID=Msa0788300-mRNA-1:cds;Parent=Msa0788300-mRNA-1
chr5_2 CDS 74789205 74789268 74789205 ID=Msa0788300-mRNA-1:cds;Parent=Msa0788300-mRNA-1
chr5_2 CDS 74788558 74788721 74788558 ID=Msa0788300-mRNA-1:cds;Parent=Msa0788300-mRNA-1
chr5_2 CDS 74787590 74788141 74787590 ID=Msa0788300-mRNA-1:cds;Parent=Msa0788300-mRNA-1
chr5_2 three_prime_UTR 74787359 74787589 74787359 ID=Msa0788300-mRNA-1:three_prime_utr;Parent=Msa0788300-mRNA-1
Gene Sequence

>Msa0788300

ATGCAGTTCCCTTCACTCTCTAACTTGAATGTTTGGAGGGTTTCTGCAACTATGACAGTTTGGACATTTTTGTTGCTCACAATACTACTACTGAAGAGTGATGTTGCATATTGTAACTACTTGATTGGTCTTGGAAGCTATGACATTACCGGTCCTGCAGCTGATGTTAACATGATGGGCTATGCTAACACAGAGCAGATTGCATCTGGGGTTCACTTTAGGTTGCGGTCTCGTGCTTTTATTGTTGCCGAGCCTAAGGGTAATAGGCTAGTGTTTGTTAATCTCGATGCTTGTATGGGTGCACAGCTTGTTACTATCAAAGTACTTGAGAGGCTTAAAGCAAGATATGGTGATGTATATACAGAAAATAATGTAGCGATTAGTGGAATTCACACCCATGCTGGTCCTGGGGGGTATCTTCAGTATGTTGTGTATATTGTAACATCTCTGGGATTCGTTCGCCAGTCATTTGATGCCCTTGTTGATGGCATTGAGAAAAGCATTGTTCAGGCACATGAAAATCTCCGCCCAGGATCAATATTTGTCAATAAGGGAGAGCTTTTAGATGCTGGTGTTAATCGCAGTCCCAGCGCTTACCTCAACAATCCGGCTGCAGAGAGAAGCAAATACAAATATAATGTTGATAAAGAAATGTCTCTTTTGAAGTTTGTTGATGATGAATGGGGTCCTTCGGGAAGCTTCAACTGGTTTGCTACTCATGGTACTTCAATGAGTCGTACAAATTCATTAATTAGTGGGGATAATAAGGGTGCTGCTGCACGATTTATGGAAGACTGGTTTGAGCGAAAAAGTTCTGTAAGAAAGGATTCTGTTAGATTTGAAGATGATGGCTTACCTCGAAGAATTTCAAACATAATTCCCAGTCTTCATAATAATCATCATGAATTACTGGAACTTGCTGCATCATTCCAATCTCCTCCCGGTAGACCAGCGACCAAAACTTCAAGTGTTGCTAGACGTGTAAGAGGTGCCCTTAGACAGGTTAACAAACCTAGATTTGTATCTGCATTTTGTCAATCAAATTGTGGTGATGTTAGTCCGAATGTACTTGGAGCCTTTTGTACAGACACTGGATTACCTTGTGACTTCAATCACAGCACATGTGGGGGGAAGAATGAGTTATGCTATGGCCGGGGACCTGGTTACCCAGATGAATTTGAAAGTACACGTATTATAGGGGAGAGACAGTTTAAAAAAGCAGTGGAGCTATTCAATGGAGCATCTGAACAGATTAAAGGAAAGGTGGATTTTCGACATGCCTTCCTAGATTTTTCCAAGCTCGAGGTAAATGTTTCTAGCAGTGGAGCTTCTAAGGTAGTAAAGACATGCCCTGCTGCAATGGGATTTGGATTTGCTGCTGGAACAACTGATGGACCCGGAGCATTTGATTTTAAGCAAGGTGATGATCAGGGGAACCCTTTCTGGAAACTGGTCCGTAATTTACTGAAAACGCCTGACAAGGAACAAATAGCCTGTCAGCAGCCAAAGCCTATTTTGCTTGATACTGGTGAAATGAAGCTTCCATATGATTGGGCTCCTACTATACTTCCAATCCAAATCCTCCGAATTGGGCAGTTTTTTATTCTTAGTGTACCAGGAGAATTCACAACAATGGCTGGGAGGCGGCTTCGTGATGCAGTGAAGACAGTGCTAAGCGGGGACAAAAGCTTAGGTAGCAACATTCATGTTGTTATAGCAGGGTTGACCAATACTTATTCACAGTATGTGACCACATACGAGGAGTACGAGGTGCAAAGATATGAGGGTGCTTCCACACTTTATGGTCCACACACATTGAGTGCATACATTCAGGAATTCAAGAAGCTTGCACACGCTCTCATCAACGGCCAGCCTGTAGAATCAGGCCCGCAACCACCAGACCTCCTGGACAAGCAAATAGGCTTACTAACACCAGTAGTGATGGATGGAACCCCTCTTGGTGCAAGTTTTGGGGATTGTAGTTCTGATGTGCCAAAAAATTCCACCTTTAAGAGAGGTGATACGGTTTCTGTTACTTTTTGGTCTGCTTGCCCTCGAAATGACCTTATGACCGAAGGTACATTTTCTCTGGTGGAATATCTCCAAGGGAAGGATACTTGGGTTCCTGCTTATGACGATGATGATTTTTGTGTGCGCTTCAAATGGTCAAGGCCTTTCAAACTCAGTACTCATAGTAAAGCCACAATAGAATGGAGAATACCACAGGATGTAGCTCCTGGTGTATACAGAATAAAACATTTTGGAGCTGCAAAGGGTTTATTAGGGTCAATTCGTCACTTTACAGGTTCATCTAGTGCATTTGTAGTAGCACACTAA
Protein sequence

>Msa0788300

MQFPSLSNLNVWRVSATMTVWTFLLLTILLLKSDVAYCNYLIGLGSYDITGPAADVNMMGYANTEQIASGVHFRLRSRAFIVAEPKGNRLVFVNLDACMGAQLVTIKVLERLKARYGDVYTENNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSIVQAHENLRPGSIFVNKGELLDAGVNRSPSAYLNNPAAERSKYKYNVDKEMSLLKFVDDEWGPSGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFERKSSVRKDSVRFEDDGLPRRISNIIPSLHNNHHELLELAASFQSPPGRPATKTSSVARRVRGALRQVNKPRFVSAFCQSNCGDVSPNVLGAFCTDTGLPCDFNHSTCGGKNELCYGRGPGYPDEFESTRIIGERQFKKAVELFNGASEQIKGKVDFRHAFLDFSKLEVNVSSSGASKVVKTCPAAMGFGFAAGTTDGPGAFDFKQGDDQGNPFWKLVRNLLKTPDKEQIACQQPKPILLDTGEMKLPYDWAPTILPIQILRIGQFFILSVPGEFTTMAGRRLRDAVKTVLSGDKSLGSNIHVVIAGLTNTYSQYVTTYEEYEVQRYEGASTLYGPHTLSAYIQEFKKLAHALINGQPVESGPQPPDLLDKQIGLLTPVVMDGTPLGASFGDCSSDVPKNSTFKRGDTVSVTFWSACPRNDLMTEGTFSLVEYLQGKDTWVPAYDDDDFCVRFKWSRPFKLSTHSKATIEWRIPQDVAPGVYRIKHFGAAKGLLGSIRHFTGSSSAFVVAH*