AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1384660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384660 MtrunA17_Chr5g0447261 98.843 778 9 0 1 778 1 778 0.0 1603
Msa1384660 MtrunA17_Chr3g0103491 75.679 810 161 4 1 776 1 808 0.0 1260
Msa1384660 MtrunA17_Chr3g0118451 58.155 748 248 11 37 776 23 713 0.0 849
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384660 AT1G07380.2 74.103 780 194 5 6 777 1 780 0.0 1193
Msa1384660 AT1G07380.1 74.131 777 196 4 6 777 3 779 0.0 1192
Msa1384660 AT2G38010.3 73.919 740 181 5 40 776 26 756 0.0 1141
Msa1384660 AT2G38010.1 73.919 740 181 5 40 776 26 756 0.0 1140
Msa1384660 AT2G38010.2 70.581 775 181 6 40 776 26 791 0.0 1122
Msa1384660 AT5G58980.1 71.930 741 169 8 39 776 28 732 0.0 1102

Find 240 sgRNAs with CRISPR-Local

Find 489 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTATTAATATATAATT+TGG 0.069131 tig0020668:-86170 Msa1384660:three_prime_UTR
TGAATGAAGGTTCCTAATTT+TGG 0.113917 tig0020668:+92688 None:intergenic
TGTATCAGGGGAACCCTTTC+TGG 0.155421 tig0020668:-88447 Msa1384660:intron
GGAGCTGCAAAGGGTTTATT+AGG 0.162179 tig0020668:-86296 Msa1384660:CDS
ACCCCTCTTGGTGCAAGTTT+TGG 0.167335 tig0020668:-86608 Msa1384660:CDS
GGGTGCTGCTGCACGATTTA+TGG 0.180402 tig0020668:-89905 Msa1384660:CDS
ATTAATTAGTGGGGATAATA+AGG 0.182190 tig0020668:-89926 Msa1384660:CDS
TAGGGTGCTTCCACACTTTA+TGG 0.192040 tig0020668:-86776 Msa1384660:CDS
CTTGGAAAATTGGTCTTTCT+TGG 0.231444 tig0020668:-91747 Msa1384660:five_prime_UTR
AACCGTATCACCTCTCTTAA+AGG 0.249905 tig0020668:+86553 None:intergenic
ACTGCCCAATTCGGAGGATT+TGG 0.253488 tig0020668:+87891 None:intergenic
TTGCATCTGGGGTTCACTTT+AGG 0.253795 tig0020668:-91497 Msa1384660:CDS
AGGATCAATATTTGTCAATA+AGG 0.253952 tig0020668:-90709 Msa1384660:CDS
AAGCATGCAATTCCAAAATT+AGG 0.262551 tig0020668:-92700 None:intergenic
TCACCAGTATCAAGCAAAAT+AGG 0.268049 tig0020668:+88361 None:intergenic
GGGTCAATTCGTCACTTTAC+AGG 0.270731 tig0020668:-86275 Msa1384660:CDS
TTTGAAAGTACACGTATTAT+AGG 0.273468 tig0020668:-88777 Msa1384660:CDS
TGCCCTGCTGCAATGGGATT+TGG 0.283733 tig0020668:-88606 Msa1384660:CDS
GTATACAGAATAAAACATTT+TGG 0.293949 tig0020668:-86317 Msa1384660:CDS
TTGAAAGTACACGTATTATA+GGG 0.295150 tig0020668:-88776 Msa1384660:CDS
AATACGATAAATAAATAAAT+AGG 0.312744 tig0020668:-92665 Msa1384660:five_prime_UTR
CACTCTCTAACTTGAATGTT+TGG 0.315163 tig0020668:-91683 Msa1384660:CDS
ATTCACACCCATGCTGGTCC+TGG 0.316768 tig0020668:-90852 Msa1384660:CDS
CCAGGAGGTCTGGTGGTTGC+GGG 0.317859 tig0020668:+86672 None:intergenic
TTCTAGCAGTGGAGCTTCTA+AGG 0.320178 tig0020668:-88640 Msa1384660:CDS
ACCGGCTAAGCTTGGAAAAT+TGG 0.327940 tig0020668:-91757 Msa1384660:five_prime_UTR
AACATTCATGTTGTTATAGC+AGG 0.333161 tig0020668:-87276 Msa1384660:CDS
CGTGTACTTTCAAATTCATC+TGG 0.337017 tig0020668:+88786 None:intergenic
TAGGTTTGTTAACCTGTCTA+AGG 0.340793 tig0020668:+89061 None:intergenic
TCTAGCAACACTTGAAGTTT+TGG 0.340869 tig0020668:+89098 None:intergenic
GGAGCATCTGAACAGATTAA+AGG 0.342606 tig0020668:-88717 Msa1384660:CDS
CCAATCCAAATCCTCCGAAT+TGG 0.345676 tig0020668:-87896 Msa1384660:CDS
CCCACACTTGCTGCAAGCTT+TGG 0.346712 tig0020668:-92501 Msa1384660:five_prime_UTR
TTCACACCCATGCTGGTCCT+GGG 0.349429 tig0020668:-90851 Msa1384660:CDS
AACACAGAGCAGATTGCATC+TGG 0.359080 tig0020668:-91510 Msa1384660:CDS
TCATTTGATGCCCTTGTTGA+TGG 0.361338 tig0020668:-90774 Msa1384660:CDS
GAAAATAATGTAGCGATTAG+TGG 0.362437 tig0020668:-90876 Msa1384660:CDS
GTCCTTCGGGAAGCTTCAAC+TGG 0.364059 tig0020668:-89987 Msa1384660:CDS
TTATGCTATGGCCGGGGACC+TGG 0.366600 tig0020668:-88913 Msa1384660:CDS
GATTCATTCTACACGTTCAA+TGG 0.367273 tig0020668:-86204 Msa1384660:three_prime_UTR
TCCAGGAGGTCTGGTGGTTG+CGG 0.375652 tig0020668:+86671 None:intergenic
ATCTCCAAGGGAAGGATACT+TGG 0.377460 tig0020668:-86460 Msa1384660:CDS
TTATTATTAATATATAATTT+GGG 0.377477 tig0020668:-86169 Msa1384660:three_prime_UTR
ATTTGGATTGGAAGTATAGT+AGG 0.379596 tig0020668:+87908 None:intergenic
TGTAACTACTTGATTGGTCT+TGG 0.380743 tig0020668:-91585 Msa1384660:CDS
AAATGAAGCTTCCATATGAT+TGG 0.381567 tig0020668:-88339 Msa1384660:CDS
TTGCCGAGCCTAAGGGTAAT+AGG 0.383793 tig0020668:-91452 Msa1384660:CDS
AAAGATCACAACTTTACATC+TGG 0.384903 tig0020668:-92450 Msa1384660:five_prime_UTR
GGGGAACCCTTTCTGGAAAC+TGG 0.385318 tig0020668:-88440 Msa1384660:CDS
TGGTACAGATCATGAATTAC+TGG 0.387161 tig0020668:-89163 Msa1384660:intron
TCTGTAAAGAATTTGTGATA+TGG 0.389696 tig0020668:+86051 None:intergenic
ATTTGCTTGTCCAGGAGGTC+TGG 0.390871 tig0020668:+86662 None:intergenic
TTTCTTGGTTGATTTGAACT+TGG 0.391219 tig0020668:-91732 Msa1384660:five_prime_UTR
CACATTGAGTGCATACATTC+AGG 0.395769 tig0020668:-86747 Msa1384660:CDS
TGTTAATCTCGATGCTTGTA+TGG 0.396574 tig0020668:-91421 Msa1384660:CDS
CAAAATGCAGATACAAATCT+AGG 0.397406 tig0020668:+89042 None:intergenic
CTTACGATTATTATGAAGAC+TGG 0.397476 tig0020668:+89792 None:intergenic
CAGGCTATTTGTTCCTTGTC+AGG 0.400770 tig0020668:+88397 None:intergenic
CCCGCAACCACCAGACCTCC+TGG 0.403471 tig0020668:-86672 Msa1384660:CDS
TGAAGTTTGTTGATGATGAA+TGG 0.409322 tig0020668:-90011 Msa1384660:CDS
AGGGAAAGAGGAGTGGAGGA+AGG 0.409423 tig0020668:+92587 None:intergenic
GGGAAAGAGGAGTGGAGGAA+GGG 0.410269 tig0020668:+92588 None:intergenic
AACGGCCAGCCTGTAGAATC+AGG 0.412830 tig0020668:-86695 Msa1384660:CDS
CATTGAGAAAAGCATTGTTC+AGG 0.415604 tig0020668:-90751 Msa1384660:CDS
TTCTTGGTTGATTTGAACTT+GGG 0.415988 tig0020668:-91731 Msa1384660:five_prime_UTR
GCATATTGTAACTACTTGAT+TGG 0.417734 tig0020668:-91591 Msa1384660:CDS
TGTGTATATTGTAACATCTC+TGG 0.423896 tig0020668:-90811 Msa1384660:CDS
CAATCCAAATCCTCCGAATT+GGG 0.426759 tig0020668:-87895 Msa1384660:CDS
CTGGTCTACCGGGAGGAGAT+TGG 0.427326 tig0020668:+89124 None:intergenic
TATTTATCGTATTTGAATGA+AGG 0.427474 tig0020668:+92675 None:intergenic
GAAGTTTGTTGATGATGAAT+GGG 0.427897 tig0020668:-90010 Msa1384660:CDS
GATGATGAATGGGGTCCTTC+GGG 0.429393 tig0020668:-90000 Msa1384660:CDS
TGATGATGAATGGGGTCCTT+CGG 0.430776 tig0020668:-90001 Msa1384660:CDS
TTTCTGCAACTATGACAGTT+TGG 0.431693 tig0020668:-91656 Msa1384660:CDS
ATGGGATTTGGATTTGCTGC+TGG 0.434763 tig0020668:-88594 Msa1384660:CDS
GACCTCCTGGACAAGCAAAT+AGG 0.436248 tig0020668:-86659 Msa1384660:CDS
CTTGGAAGCTATGACATTAC+CGG 0.440574 tig0020668:-91567 Msa1384660:CDS
TCTGTAAGAAAGGATTCTGT+TGG 0.442056 tig0020668:-89859 Msa1384660:CDS
GAGCTGCAAAGGGTTTATTA+GGG 0.442673 tig0020668:-86295 Msa1384660:CDS
TAACTTACAGCCCAATCATA+TGG 0.442820 tig0020668:+88328 None:intergenic
CAGTGAAGACAGTGCTAAGC+GGG 0.445447 tig0020668:-87317 Msa1384660:CDS
TTATTGACAAATATTGATCC+TGG 0.451580 tig0020668:+90711 None:intergenic
AAAATGTACCTTCGGTCATA+AGG 0.452052 tig0020668:+86495 None:intergenic
GGATCAATATTTGTCAATAA+GGG 0.454815 tig0020668:-90708 Msa1384660:intron
GGAAAGAGGAGTGGAGGAAG+GGG 0.456676 tig0020668:+92589 None:intergenic
AGTGATGATGAAAGGGAAAG+AGG 0.460705 tig0020668:+92575 None:intergenic
CTGGGGTTCACTTTAGGTTG+CGG 0.461071 tig0020668:-91491 Msa1384660:CDS
TAATCCAGTGTCTGTACAAA+AGG 0.461471 tig0020668:+88978 None:intergenic
TGAAGGGAAATGAGAAGAAC+CGG 0.462467 tig0020668:-91775 Msa1384660:intron
ACAGAATTCACAACAATGGC+TGG 0.467317 tig0020668:-87357 Msa1384660:intron
TTGCTTAAAATCAAATGCTC+CGG 0.467520 tig0020668:+88557 None:intergenic
TCTGTTGGATTTGAAGATGA+TGG 0.467803 tig0020668:-89844 Msa1384660:CDS
GTATCAAGCAAAATAGGCTT+TGG 0.468390 tig0020668:+88367 None:intergenic
GGTTGCGGGCCTGATTCTAC+AGG 0.469785 tig0020668:+86686 None:intergenic
AGAAACATTTACCTCGAGCT+TGG 0.469793 tig0020668:+88659 None:intergenic
TTAATTAGTGGGGATAATAA+GGG 0.471161 tig0020668:-89925 Msa1384660:CDS
TACGGACCAGTTTCCAGAAA+GGG 0.471355 tig0020668:+88434 None:intergenic
AAAGACATGCCCTGCTGCAA+TGG 0.471735 tig0020668:-88613 Msa1384660:CDS
GATGTTAGTCCGAATGTACT+TGG 0.472336 tig0020668:-89003 Msa1384660:CDS
AGAATACATAAATTAAATCA+AGG 0.472911 tig0020668:-86124 Msa1384660:three_prime_UTR
GTAAGCCTATTTGCTTGTCC+AGG 0.474340 tig0020668:+86654 None:intergenic
TAAATAAATAAATAGGAGGA+AGG 0.475977 tig0020668:-92658 Msa1384660:five_prime_UTR
TGGTATTCTCCATTCTATTG+TGG 0.476390 tig0020668:+86358 None:intergenic
CACCTTTAAGAGAGGTGATA+CGG 0.479332 tig0020668:-86555 Msa1384660:CDS
GTACAAATTCATTAATTAGT+GGG 0.481029 tig0020668:-89936 Msa1384660:CDS
AATCCAAATCCCATTGCAGC+AGG 0.482843 tig0020668:+88603 None:intergenic
AAGACATGCCCTGCTGCAAT+GGG 0.483175 tig0020668:-88612 Msa1384660:CDS
TAGAGAAAGTGATGATGAAA+GGG 0.490877 tig0020668:+92568 None:intergenic
ATAGTAAAGCCACAATAGAA+TGG 0.492162 tig0020668:-86367 Msa1384660:CDS
CTGCACGATTTATGGAAGAC+TGG 0.492992 tig0020668:-89897 Msa1384660:CDS
TGAGAAGAACCGGCTAAGCT+TGG 0.493720 tig0020668:-91765 Msa1384660:five_prime_UTR
CTAGAGAAAGTGATGATGAA+AGG 0.493970 tig0020668:+92567 None:intergenic
CGGATTGTTGAGGTAAGCGC+TGG 0.494389 tig0020668:+90086 None:intergenic
CTCTAACTTGAATGTTTGGA+GGG 0.494796 tig0020668:-91679 Msa1384660:CDS
TCACACCCATGCTGGTCCTG+GGG 0.495121 tig0020668:-90850 Msa1384660:CDS
CAAAAGGCTCCAAGTACATT+CGG 0.495399 tig0020668:+88994 None:intergenic
AATAGGCTTTGGCTGCTGAC+AGG 0.497624 tig0020668:+88378 None:intergenic
CACATACTGTGAATAAGTAT+TGG 0.499983 tig0020668:+87248 None:intergenic
GAATGAGTTATGCTATGGCC+GGG 0.500547 tig0020668:-88920 Msa1384660:CDS
CACCAGAGAAAATGTACCTT+CGG 0.503106 tig0020668:+86487 None:intergenic
GTTAACATCAGCTGCAGGAC+CGG 0.503541 tig0020668:+91548 None:intergenic
TCTCTAACTTGAATGTTTGG+AGG 0.504431 tig0020668:-91680 Msa1384660:CDS
CGTACAAATTCATTAATTAG+TGG 0.509704 tig0020668:-89937 Msa1384660:CDS
ACCAAAGCTTGCAGCAAGTG+TGG 0.510651 tig0020668:+92500 None:intergenic
TGCAGCTGATGTTAACATGA+TGG 0.511060 tig0020668:-91541 Msa1384660:CDS
GAACCCAAGTATCCTTCCCT+TGG 0.511188 tig0020668:+86456 None:intergenic
TTTGCTGCTGGAACAACTGA+TGG 0.511314 tig0020668:-88582 Msa1384660:CDS
CTATGAGTACTGAGTTTGAA+AGG 0.511908 tig0020668:+86386 None:intergenic
AGAATGAGTTATGCTATGGC+CGG 0.513372 tig0020668:-88921 Msa1384660:CDS
TATTTGCTTCTCTCTGCAGC+CGG 0.515049 tig0020668:+90066 None:intergenic
TGTAAGAGGTGCCCTTAGAC+AGG 0.516528 tig0020668:-89073 Msa1384660:CDS
TTCAACTGGTTTGCTACTCA+TGG 0.520824 tig0020668:-89973 Msa1384660:CDS
AAAGCAGTGGAGCTATTCAA+TGG 0.522635 tig0020668:-88738 Msa1384660:CDS
GCGGGCCTGATTCTACAGGC+TGG 0.526732 tig0020668:+86690 None:intergenic
CCAATTCGGAGGATTTGGAT+TGG 0.527785 tig0020668:+87896 None:intergenic
GGGGTTCCATCCATCACTAC+TGG 0.531201 tig0020668:+86626 None:intergenic
TGCTTAAAATCAAATGCTCC+GGG 0.533187 tig0020668:+88558 None:intergenic
CTAAGCGGGGACAAAAGCTT+AGG 0.537641 tig0020668:-87303 Msa1384660:CDS
TGAAAGGGAAAGAGGAGTGG+AGG 0.539343 tig0020668:+92583 None:intergenic
AAATCATCATCGTCATAAGC+AGG 0.542582 tig0020668:+86434 None:intergenic
ATTATGTTTGAAATTCTTCG+AGG 0.543415 tig0020668:+89817 None:intergenic
GTACGAGGTGCAAAGATATG+AGG 0.544022 tig0020668:-87211 Msa1384660:intron
TAAATAATTACCCAGGTCCC+CGG 0.546403 tig0020668:+88902 None:intergenic
CATTCAAGTTAGAGAGTGAA+GGG 0.548327 tig0020668:+91688 None:intergenic
CCCCAAAACTTGCACCAAGA+GGG 0.548804 tig0020668:+86606 None:intergenic
GTTAATCTCGATGCTTGTAT+GGG 0.551831 tig0020668:-91420 Msa1384660:CDS
TTACGGACCAGTTTCCAGAA+AGG 0.552216 tig0020668:+88433 None:intergenic
ACATTCATGTTGTTATAGCA+GGG 0.552414 tig0020668:-87275 Msa1384660:CDS
TACAAATTCATTAATTAGTG+GGG 0.552625 tig0020668:-89935 Msa1384660:CDS
AGTGGAATTCACACCCATGC+TGG 0.553562 tig0020668:-90858 Msa1384660:CDS
ATACCACAGGATGTAGCTCC+TGG 0.555371 tig0020668:-86341 Msa1384660:CDS
TTACTATCAAAGTACTTGAG+AGG 0.555403 tig0020668:-91386 Msa1384660:CDS
CAACAAGGGCATCAAATGAC+TGG 0.557309 tig0020668:+90778 None:intergenic
GTGTATATTGTAACATCTCT+GGG 0.558277 tig0020668:-90810 Msa1384660:CDS
ATCTGAACAGATTAAAGGAA+AGG 0.558373 tig0020668:-88712 Msa1384660:CDS
TATTGACAAATATTGATCCT+GGG 0.561235 tig0020668:+90712 None:intergenic
CATTTGTAGTAGCACACTAA+AGG 0.561836 tig0020668:-86241 Msa1384660:exon
CACAGAGCAGATTGCATCTG+GGG 0.562906 tig0020668:-91508 Msa1384660:CDS
GTGTGCGCTTCAAATGGTCA+AGG 0.563276 tig0020668:-86409 Msa1384660:CDS
TGTAGTAGCACACTAAAGGA+AGG 0.563282 tig0020668:-86237 Msa1384660:exon
AAGATCACAACTTTACATCT+GGG 0.565090 tig0020668:-92449 Msa1384660:five_prime_UTR
CAGCGCTTACCTCAACAATC+CGG 0.567342 tig0020668:-90085 Msa1384660:CDS
TGATGAAAGGGAAAGAGGAG+TGG 0.567615 tig0020668:+92580 None:intergenic
GCAGCTGATGTTAACATGAT+GGG 0.567890 tig0020668:-91540 Msa1384660:CDS
ACGATAAATAAATAAATAGG+AGG 0.567913 tig0020668:-92662 Msa1384660:five_prime_UTR
TATGCTATGGCCGGGGACCT+GGG 0.569494 tig0020668:-88912 Msa1384660:intron
TCACAACAATGGCTGGGAGG+CGG 0.569943 tig0020668:-87350 Msa1384660:CDS
AGTGTTGCTAGACGTGTAAG+AGG 0.571419 tig0020668:-89087 Msa1384660:CDS
CTTACTAACACCAGTAGTGA+TGG 0.571782 tig0020668:-86636 Msa1384660:CDS
CGTATCACCTCTCTTAAAGG+TGG 0.576466 tig0020668:+86556 None:intergenic
ATCATGTTAACATCAGCTGC+AGG 0.578755 tig0020668:+91543 None:intergenic
GCACATGAAAATCTCCGCCC+AGG 0.580646 tig0020668:-90729 Msa1384660:CDS
TTTATTGTTGCCGAGCCTAA+GGG 0.580712 tig0020668:-91459 Msa1384660:CDS
ACACAGAGCAGATTGCATCT+GGG 0.581328 tig0020668:-91509 Msa1384660:CDS
TTCAATCACAGCACATGTGG+GGG 0.582383 tig0020668:-88946 Msa1384660:CDS
AGCCTATTTGCTTGTCCAGG+AGG 0.582673 tig0020668:+86657 None:intergenic
ACATTCAAGTTAGAGAGTGA+AGG 0.583381 tig0020668:+91687 None:intergenic
GGGAAGAATGAGTTATGCTA+TGG 0.583650 tig0020668:-88925 Msa1384660:CDS
AACACTAGCCTATTACCCTT+AGG 0.583889 tig0020668:+91444 None:intergenic
AATGAAGCTTCCATATGATT+GGG 0.584180 tig0020668:-88338 Msa1384660:CDS
CTAACACCAGTAGTGATGGA+TGG 0.584666 tig0020668:-86632 Msa1384660:CDS
GTGTACTTTCAAATTCATCT+GGG 0.585221 tig0020668:+88787 None:intergenic
GACTTCAATCACAGCACATG+TGG 0.585442 tig0020668:-88949 Msa1384660:CDS
CGGTCATAAGGTCATTTCGA+GGG 0.585678 tig0020668:+86507 None:intergenic
CCAAAGCTTGCAGCAAGTGT+GGG 0.588327 tig0020668:+92501 None:intergenic
CACCTCGTACTCCTCGTATG+TGG 0.589423 tig0020668:+87224 None:intergenic
GCATCATTCCAATCTCCTCC+CGG 0.589478 tig0020668:-89132 Msa1384660:CDS
CTCTGGTGGAATATCTCCAA+GGG 0.591674 tig0020668:-86472 Msa1384660:CDS
TGAACAGATTAAAGGAAAGG+TGG 0.591836 tig0020668:-88709 Msa1384660:CDS
AAGACAGACAGACAGAGTTG+TGG 0.592859 tig0020668:+92618 None:intergenic
TCTCTGGTGGAATATCTCCA+AGG 0.594118 tig0020668:-86473 Msa1384660:CDS
AGGTTTGTTAACCTGTCTAA+GGG 0.594837 tig0020668:+89062 None:intergenic
TGCTTGTCCAGGAGGTCTGG+TGG 0.595380 tig0020668:+86665 None:intergenic
ACTTCAATCACAGCACATGT+GGG 0.598369 tig0020668:-88948 Msa1384660:CDS
TCTCTGCAGCCGGATTGTTG+AGG 0.598527 tig0020668:+90076 None:intergenic
GAGGTAAATGTTTCTAGCAG+TGG 0.603184 tig0020668:-88651 Msa1384660:CDS
CACACCCATGCTGGTCCTGG+GGG 0.603868 tig0020668:-90849 Msa1384660:CDS
TGAAAGTACACGTATTATAG+GGG 0.604050 tig0020668:-88775 Msa1384660:CDS
CCCAAAACTTGCACCAAGAG+GGG 0.604719 tig0020668:+86607 None:intergenic
TCTCCAAGGGAAGGATACTT+GGG 0.604920 tig0020668:-86459 Msa1384660:CDS
CAGAATTCACAACAATGGCT+GGG 0.606076 tig0020668:-87356 Msa1384660:CDS
GTGATGGATGGAACCCCTCT+TGG 0.606165 tig0020668:-86620 Msa1384660:CDS
TTTCTCAATGCCATCAACAA+GGG 0.607066 tig0020668:+90764 None:intergenic
AATAGAATGGAGAATACCAC+AGG 0.608925 tig0020668:-86354 Msa1384660:CDS
AAATAAATAAATAGGAGGAA+GGG 0.609810 tig0020668:-92657 Msa1384660:five_prime_UTR
TCGGTCATAAGGTCATTTCG+AGG 0.613759 tig0020668:+86506 None:intergenic
TAGCCTATTACCCTTAGGCT+CGG 0.623029 tig0020668:+91449 None:intergenic
TCTGGATAACAAAGGACATG+TGG 0.623405 tig0020668:+86091 None:intergenic
GCTGGAACAACTGATGGACC+CGG 0.623560 tig0020668:-88576 Msa1384660:CDS
TACTTGAGAGGCTTAAAGCA+AGG 0.625748 tig0020668:-91374 Msa1384660:intron
TTTACTGAAAACGCCTGACA+AGG 0.625837 tig0020668:-88410 Msa1384660:CDS
AATGAGTTATGCTATGGCCG+GGG 0.625978 tig0020668:-88919 Msa1384660:CDS
GTAGTAGCACACTAAAGGAA+GGG 0.627966 tig0020668:-86236 Msa1384660:exon
CTTCAATCACAGCACATGTG+GGG 0.630784 tig0020668:-88947 Msa1384660:CDS
ACACCCATGCTGGTCCTGGG+GGG 0.630793 tig0020668:-90848 Msa1384660:CDS
TCCCCAAAACTTGCACCAAG+AGG 0.631634 tig0020668:+86605 None:intergenic
CGAAATGACCTTATGACCGA+AGG 0.634937 tig0020668:-86503 Msa1384660:CDS
TCTCTTGTGAATATTAGCCA+AGG 0.638405 tig0020668:+85999 None:intergenic
AACCAGTTGAAGCTTCCCGA+AGG 0.641124 tig0020668:+89985 None:intergenic
TTACGATTATTATGAAGACT+GGG 0.643788 tig0020668:+89793 None:intergenic
TCTGACAGAATTCACAACAA+TGG 0.655113 tig0020668:-87361 Msa1384660:intron
GGTGGAATATCTCCAAGGGA+AGG 0.657299 tig0020668:-86468 Msa1384660:CDS
AAGTTTGTTGATGATGAATG+GGG 0.657872 tig0020668:-90009 Msa1384660:CDS
ATCCAAATCCCATTGCAGCA+GGG 0.660254 tig0020668:+88604 None:intergenic
CTTGCACACGCTCTCATCAA+CGG 0.665760 tig0020668:-86713 Msa1384660:CDS
GGATTGTTGAGGTAAGCGCT+GGG 0.676508 tig0020668:+90087 None:intergenic
GACCACATACGAGGAGTACG+AGG 0.677175 tig0020668:-87226 Msa1384660:CDS
ACACCAGGAGCTACATCCTG+TGG 0.687402 tig0020668:+86338 None:intergenic
TTTATTCTTAGTGTACCAGG+AGG 0.687580 tig0020668:-87866 Msa1384660:intron
TTGGTCGCTGGTCTACCGGG+AGG 0.688120 tig0020668:+89117 None:intergenic
TCAATCACAGCACATGTGGG+GGG 0.690919 tig0020668:-88945 Msa1384660:CDS
ATCACAACTTTACATCTGGG+TGG 0.691314 tig0020668:-92446 Msa1384660:intron
ATGTATGCACTCAATGTGTG+TGG 0.694548 tig0020668:+86752 None:intergenic
TGACAAATATTGATCCTGGG+CGG 0.695181 tig0020668:+90715 None:intergenic
ACAGTATGTGACCACATACG+AGG 0.711222 tig0020668:-87235 Msa1384660:CDS
GCAGTGAAGACAGTGCTAAG+CGG 0.712901 tig0020668:-87318 Msa1384660:CDS
AGTGAAGACAGTGCTAAGCG+GGG 0.715425 tig0020668:-87316 Msa1384660:CDS
AATTCACAACAATGGCTGGG+AGG 0.717802 tig0020668:-87353 Msa1384660:CDS
GTGCTGTGATTGAAGTCACA+AGG 0.729346 tig0020668:+88955 None:intergenic
TGTGTGTGGACCATAAAGTG+TGG 0.758656 tig0020668:+86766 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTTTTTTT+TGG - tig0020668:90616-90635 Msa1384660:intron 0.0%
!! TTATTATTAATATATAATTT+GGG - tig0020668:92530-92549 Msa1384660:five_prime_UTR 0.0%
!! AATACGATAAATAAATAAAT+AGG - tig0020668:86034-86053 Msa1384660:three_prime_UTR 10.0%
!! TGAAATATAAATAGAAATTT+GGG + tig0020668:86450-86469 None:intergenic 10.0%
!! ATGAAATATAAATAGAAATT+TGG + tig0020668:86451-86470 None:intergenic 10.0%
!!! TTTTTATTTTTGTTCTTTAA+TGG - tig0020668:86473-86492 Msa1384660:CDS 10.0%
!!! TTTTATTTTTGTTCTTTAAT+GGG - tig0020668:86474-86493 Msa1384660:CDS 10.0%
!! ATTTACCTTGTATTATATAT+GGG + tig0020668:87462-87481 None:intergenic 15.0%
!!! TTCAATTATTAATTGATAGT+AGG - tig0020668:88978-88997 Msa1384660:CDS 15.0%
!! ATTATCACTTATATAAAGTA+AGG + tig0020668:89425-89444 None:intergenic 15.0%
!!! TTTAATGAGTAATATTTTCT+TGG - tig0020668:89446-89465 Msa1384660:intron 15.0%
!!! TCATTTTAGTAAATTTGTAA+TGG - tig0020668:90538-90557 Msa1384660:intron 15.0%
!! ATTAATTGAATTTACTAAAG+TGG + tig0020668:90598-90617 None:intergenic 15.0%
!!! CTTAACATTTTAAAATGTAA+AGG + tig0020668:90904-90923 None:intergenic 15.0%
!! TTCAATTATTCATATTGTTA+GGG - tig0020668:91905-91924 Msa1384660:intron 15.0%
!! AGAATACATAAATTAAATCA+AGG - tig0020668:92575-92594 Msa1384660:five_prime_UTR 15.0%
!! ACAAAAAGATTTAATGAAAT+CGG + tig0020668:92677-92696 None:intergenic 15.0%
!!! ATTTCATTAAATCTTTTTGT+GGG - tig0020668:92677-92696 Msa1384660:five_prime_UTR 15.0%
!! TATTTATCGTATTTGAATGA+AGG + tig0020668:86027-86046 None:intergenic 20.0%
!! ACGATAAATAAATAAATAGG+AGG - tig0020668:86037-86056 Msa1384660:three_prime_UTR 20.0%
!! TAAATAAATAAATAGGAGGA+AGG - tig0020668:86041-86060 Msa1384660:three_prime_UTR 20.0%
!! AAATAAATAAATAGGAGGAA+GGG - tig0020668:86042-86061 Msa1384660:three_prime_UTR 20.0%
!! ATAAACACATAATTAACAGA+GGG + tig0020668:86296-86315 None:intergenic 20.0%
!!! GGAAAATTGAACTTTTTTTT+TGG - tig0020668:86556-86575 Msa1384660:CDS 20.0%
!!! CACTAACATTATTTTTAGAA+TGG + tig0020668:86777-86796 None:intergenic 20.0%
!!! CATTCTAAAAATAATGTTAG+TGG - tig0020668:86775-86794 Msa1384660:CDS 20.0%
!! GATTTACCTTGTATTATATA+TGG + tig0020668:87463-87482 None:intergenic 20.0%
!!! TTTATTTTGTTTGACAGATA+TGG - tig0020668:87787-87806 Msa1384660:intron 20.0%
!! TATCCATTATAAATACCTAA+GGG + tig0020668:88045-88064 None:intergenic 20.0%
!! TTATCCATTATAAATACCTA+AGG + tig0020668:88046-88065 None:intergenic 20.0%
!!! ACTTCATTGTTATTTAATTG+TGG - tig0020668:88065-88084 Msa1384660:intron 20.0%
!!! CTTCATTGTTATTTAATTGT+GGG - tig0020668:88066-88085 Msa1384660:intron 20.0%
!! GAAAAAGATGAAAAATCTAT+AGG - tig0020668:88116-88135 Msa1384660:intron 20.0%
!! AGATTATGAAAGAACAAAAA+AGG + tig0020668:88207-88226 None:intergenic 20.0%
!! CGTTAAATTATTATCAGTAT+CGG - tig0020668:88374-88393 Msa1384660:CDS 20.0%
!! GTACAAATTCATTAATTAGT+GGG - tig0020668:88763-88782 Msa1384660:CDS 20.0%
!! TACAAATTCATTAATTAGTG+GGG - tig0020668:88764-88783 Msa1384660:CDS 20.0%
!!! TTATTAATTGATAGTAGGTT+TGG - tig0020668:88983-89002 Msa1384660:CDS 20.0%
!! GATAGATAGTTATAACTTAT+GGG + tig0020668:89213-89232 None:intergenic 20.0%
!! AGATAGATAGTTATAACTTA+TGG + tig0020668:89214-89233 None:intergenic 20.0%
!!! TATTTTCTTGGATATGATTT+AGG - tig0020668:89458-89477 Msa1384660:intron 20.0%
!!! ATTTTCTTGGATATGATTTA+GGG - tig0020668:89459-89478 Msa1384660:intron 20.0%
!! TAATCTCACATGAAATTTAT+TGG - tig0020668:89516-89535 Msa1384660:intron 20.0%
!! TATGTAATAAATAATTACCC+AGG + tig0020668:89807-89826 None:intergenic 20.0%
!! ATATATAAGAATACAAGTCT+AGG + tig0020668:90217-90236 None:intergenic 20.0%
!! ACATAATATTCAGCATAAAA+GGG + tig0020668:90397-90416 None:intergenic 20.0%
!!! GATTAGTTATATGGTTAATT+AGG - tig0020668:90441-90460 Msa1384660:intron 20.0%
!! TTAATTAGGAAAAAAAGAGA+GGG - tig0020668:90455-90474 Msa1384660:intron 20.0%
!! AAAAAATGTAGACATACATA+TGG + tig0020668:90698-90717 None:intergenic 20.0%
!!! TACATTTTTTTTTCTTTCTG+TGG - tig0020668:90708-90727 Msa1384660:intron 20.0%
!!! TACACTATTTTTCATTGATT+CGG + tig0020668:90969-90988 None:intergenic 20.0%
!!! ATTACGATATTTTGACTATT+TGG - tig0020668:91043-91062 Msa1384660:intron 20.0%
!!! TTACGATATTTTGACTATTT+GGG - tig0020668:91044-91063 Msa1384660:intron 20.0%
!! AATGTATTAAACAAGACATT+TGG + tig0020668:91174-91193 None:intergenic 20.0%
!! TCAAATAAGTATCTTTGTAT+TGG - tig0020668:91619-91638 Msa1384660:CDS 20.0%
!!! TTAACAGAGTTTTGAAAAAA+AGG + tig0020668:91834-91853 None:intergenic 20.0%
!! CTTCAATTATTCATATTGTT+AGG - tig0020668:91904-91923 Msa1384660:intron 20.0%
!!! GTATACAGAATAAAACATTT+TGG - tig0020668:92382-92401 Msa1384660:intron 20.0%
!!! TAAAAATTTCTGGATAACAA+AGG + tig0020668:92619-92638 None:intergenic 20.0%
!! GAAAAGCAAATAAAAATTTC+TGG + tig0020668:92629-92648 None:intergenic 20.0%
!!! GATTTCATTAAATCTTTTTG+TGG - tig0020668:92676-92695 Msa1384660:five_prime_UTR 20.0%
! CATAAACACATAATTAACAG+AGG + tig0020668:86297-86316 None:intergenic 25.0%
! AATGCAGAGAATTCTAATTT+GGG + tig0020668:86391-86410 None:intergenic 25.0%
! AAATGCAGAGAATTCTAATT+TGG + tig0020668:86392-86411 None:intergenic 25.0%
! TAAACAAGGAATTCCAATTT+GGG + tig0020668:86626-86645 None:intergenic 25.0%
! AAAAACATGAAAGGTAAACA+AGG + tig0020668:86640-86659 None:intergenic 25.0%
! TTCACTCAAAAAAACATGAA+AGG + tig0020668:86649-86668 None:intergenic 25.0%
!!! GTTTGAGTGTTATTTTTTGT+AGG - tig0020668:86802-86821 Msa1384660:intron 25.0%
! TTACAATAGATTGACTATCA+AGG - tig0020668:87375-87394 Msa1384660:intron 25.0%
! ATTGACCCATATATAATACA+AGG - tig0020668:87454-87473 Msa1384660:intron 25.0%
! TGAAAAGGTCAATTTCTTAT+GGG + tig0020668:87499-87518 None:intergenic 25.0%
! ACAAAATAAAATGCAATGTC+AGG + tig0020668:87777-87796 None:intergenic 25.0%
! TATTGACAAATATTGATCCT+GGG + tig0020668:87990-88009 None:intergenic 25.0%
! TTATTGACAAATATTGATCC+TGG + tig0020668:87991-88010 None:intergenic 25.0%
! AGGATCAATATTTGTCAATA+AGG - tig0020668:87990-88009 Msa1384660:intron 25.0%
! GGATCAATATTTGTCAATAA+GGG - tig0020668:87991-88010 Msa1384660:intron 25.0%
! AATATTTGTCAATAAGGGTA+AGG - tig0020668:87996-88015 Msa1384660:intron 25.0%
! ATATTTGTCAATAAGGGTAA+GGG - tig0020668:87997-88016 Msa1384660:intron 25.0%
!! TGTCTTTGTATAGTTTTTCA+GGG + tig0020668:88474-88493 None:intergenic 25.0%
!! TTGTCTTTGTATAGTTTTTC+AGG + tig0020668:88475-88494 None:intergenic 25.0%
! CGTACAAATTCATTAATTAG+TGG - tig0020668:88762-88781 Msa1384660:CDS 25.0%
! ATTAATTAGTGGGGATAATA+AGG - tig0020668:88773-88792 Msa1384660:CDS 25.0%
! TTAATTAGTGGGGATAATAA+GGG - tig0020668:88774-88793 Msa1384660:CDS 25.0%
!! ATTATGTTTGAAATTCTTCG+AGG + tig0020668:88885-88904 None:intergenic 25.0%
! TTACGATTATTATGAAGACT+GGG + tig0020668:88909-88928 None:intergenic 25.0%
! ATATAGTATAGCTGTTCTAT+TGG - tig0020668:89177-89196 Msa1384660:intron 25.0%
!! TTTTCTTGGATATGATTTAG+GGG - tig0020668:89460-89479 Msa1384660:intron 25.0%
!! TTTGAAAGTACACGTATTAT+AGG - tig0020668:89922-89941 Msa1384660:CDS 25.0%
!! TTGAAAGTACACGTATTATA+GGG - tig0020668:89923-89942 Msa1384660:CDS 25.0%
!!! TTACTTTTTTGTGTGTATCA+GGG - tig0020668:90239-90258 Msa1384660:intron 25.0%
! GACATAATATTCAGCATAAA+AGG + tig0020668:90398-90417 None:intergenic 25.0%
! GTTAATTAGGAAAAAAAGAG+AGG - tig0020668:90454-90473 Msa1384660:intron 25.0%
!!! TTTTTTATTCTTAGTGTACC+AGG - tig0020668:90830-90849 Msa1384660:CDS 25.0%
! ATAGTCAAAATATCGTAATC+AGG + tig0020668:91042-91061 None:intergenic 25.0%
! TACATTGCAGTTCTATTATA+TGG - tig0020668:91188-91207 Msa1384660:intron 25.0%
! ATAGTAATCACAAATTTCCA+AGG + tig0020668:91227-91246 None:intergenic 25.0%
! TATCACCTATGTATTTCTTT+GGG - tig0020668:91286-91305 Msa1384660:intron 25.0%
! TCTGTAAAGAATTTGTGATA+TGG + tig0020668:92651-92670 None:intergenic 25.0%
! TAGAGAAAGTGATGATGAAA+GGG + tig0020668:86134-86153 None:intergenic 30.0%
AAAGATCACAACTTTACATC+TGG - tig0020668:86249-86268 Msa1384660:CDS 30.0%
AAGATCACAACTTTACATCT+GGG - tig0020668:86250-86269 Msa1384660:CDS 30.0%
TTGGGAGGTTAATTAATCAT+GGG + tig0020668:86373-86392 None:intergenic 30.0%
TTTGGGAGGTTAATTAATCA+TGG + tig0020668:86374-86393 None:intergenic 30.0%
! TTTTGTTCTTTAATGGGAAC+TGG - tig0020668:86480-86499 Msa1384660:CDS 30.0%
TTTGTTCTTTAATGGGAACT+GGG - tig0020668:86481-86500 Msa1384660:CDS 30.0%
GAATTCATCAATCATGGTTA+TGG + tig0020668:86604-86623 None:intergenic 30.0%
ATTTGGGAATTCATCAATCA+TGG + tig0020668:86610-86629 None:intergenic 30.0%
TGATTGATGAATTCCCAAAT+TGG - tig0020668:86610-86629 Msa1384660:CDS 30.0%
GTAAACAAGGAATTCCAATT+TGG + tig0020668:86627-86646 None:intergenic 30.0%
! GTTTTGTGAGTGACTAAATT+AGG + tig0020668:86701-86720 None:intergenic 30.0%
! AAATTTCTGAGGACCAAATT+GGG - tig0020668:86845-86864 Msa1384660:intron 30.0%
AAAAAGAGTAAACCCCAATT+TGG + tig0020668:86861-86880 None:intergenic 30.0%
!! TTTGTGTGTTTGATTTGTGA+AGG - tig0020668:86907-86926 Msa1384660:intron 30.0%
!! TTGTGTGTTTGATTTGTGAA+GGG - tig0020668:86908-86927 Msa1384660:intron 30.0%
!! TTTCTTGGTTGATTTGAACT+TGG - tig0020668:86967-86986 Msa1384660:intron 30.0%
!! TTCTTGGTTGATTTGAACTT+GGG - tig0020668:86968-86987 Msa1384660:intron 30.0%
GCATATTGTAACTACTTGAT+TGG - tig0020668:87108-87127 Msa1384660:intron 30.0%
! TTACTATCAAAGTACTTGAG+AGG - tig0020668:87313-87332 Msa1384660:CDS 30.0%
CTGAAAAGGTCAATTTCTTA+TGG + tig0020668:87500-87519 None:intergenic 30.0%
! GAAATTGACCTTTTCAGAAT+AGG - tig0020668:87503-87522 Msa1384660:intron 30.0%
GAAAATAATGTAGCGATTAG+TGG - tig0020668:87823-87842 Msa1384660:intron 30.0%
TGTGTATATTGTAACATCTC+TGG - tig0020668:87888-87907 Msa1384660:CDS 30.0%
GTGTATATTGTAACATCTCT+GGG - tig0020668:87889-87908 Msa1384660:CDS 30.0%
CTTCCCTTAGGTATTTATAA+TGG - tig0020668:88039-88058 Msa1384660:intron 30.0%
!!! TCAGTTTTAGCTTTACCTTT+TGG - tig0020668:88150-88169 Msa1384660:intron 30.0%
CATAGACAATTGAAACCAAA+AGG + tig0020668:88168-88187 None:intergenic 30.0%
TTTAACGTAATGACATGTGT+CGG + tig0020668:88361-88380 None:intergenic 30.0%
AATTTCTATGATACAAGCAG+GGG + tig0020668:88445-88464 None:intergenic 30.0%
CAATTTCTATGATACAAGCA+GGG + tig0020668:88446-88465 None:intergenic 30.0%
TCAATTTCTATGATACAAGC+AGG + tig0020668:88447-88466 None:intergenic 30.0%
AACCATGAAATATCACCAAA+GGG + tig0020668:88534-88553 None:intergenic 30.0%
ATATTTCATCTTCTTCTTGC+AGG - tig0020668:88558-88577 Msa1384660:CDS 30.0%
!! TGAAGTTTGTTGATGATGAA+TGG - tig0020668:88688-88707 Msa1384660:CDS 30.0%
!! GAAGTTTGTTGATGATGAAT+GGG - tig0020668:88689-88708 Msa1384660:CDS 30.0%
!! AAGTTTGTTGATGATGAATG+GGG - tig0020668:88690-88709 Msa1384660:CDS 30.0%
CTTACGATTATTATGAAGAC+TGG + tig0020668:88910-88929 None:intergenic 30.0%
CGTAAGCTCTTTAATGTATT+TGG - tig0020668:88924-88943 Msa1384660:CDS 30.0%
TTATCACCCCAAAAAAGAAT+CGG + tig0020668:89113-89132 None:intergenic 30.0%
! CTTGCACTAATTTTGTTCTT+TGG - tig0020668:89263-89282 Msa1384660:intron 30.0%
CAAAATGCAGATACAAATCT+AGG + tig0020668:89660-89679 None:intergenic 30.0%
! GCATTTTGTCAATCAAATTG+CGG - tig0020668:89672-89691 Msa1384660:intron 30.0%
AGGTAATTTATAGTAATCGC+TGG + tig0020668:89867-89886 None:intergenic 30.0%
GCAATATTAGTTACAACAAG+AGG + tig0020668:89887-89906 None:intergenic 30.0%
GTGTACTTTCAAATTCATCT+GGG + tig0020668:89915-89934 None:intergenic 30.0%
! TGAAAGTACACGTATTATAG+GGG - tig0020668:89924-89943 Msa1384660:CDS 30.0%
ATCTGAACAGATTAAAGGAA+AGG - tig0020668:89987-90006 Msa1384660:CDS 30.0%
TTGCTTAAAATCAAATGCTC+CGG + tig0020668:90145-90164 None:intergenic 30.0%
! GAATACAAGTCTAGGATAAT+GGG + tig0020668:90209-90228 None:intergenic 30.0%
! AGAATACAAGTCTAGGATAA+TGG + tig0020668:90210-90229 None:intergenic 30.0%
!!! CTTACTTTTTTGTGTGTATC+AGG - tig0020668:90238-90257 Msa1384660:intron 30.0%
!!! TACTTTTTTGTGTGTATCAG+GGG - tig0020668:90240-90259 Msa1384660:intron 30.0%
AAATGAAGCTTCCATATGAT+TGG - tig0020668:90360-90379 Msa1384660:intron 30.0%
AATGAAGCTTCCATATGATT+GGG - tig0020668:90361-90380 Msa1384660:intron 30.0%
AAAAAGAGAGGGAAGATTAA+TGG - tig0020668:90466-90485 Msa1384660:intron 30.0%
AAGTCATCAAATACATGTCT+TGG + tig0020668:90675-90694 None:intergenic 30.0%
! ATTTGGATTGGAAGTATAGT+AGG + tig0020668:90794-90813 None:intergenic 30.0%
GAATAAAAAACTGCCCAATT+CGG + tig0020668:90820-90839 None:intergenic 30.0%
!!! ATGGTCATTTTTCTTTTCCT+TGG - tig0020668:91207-91226 Msa1384660:intron 30.0%
CAAAGAAATACATAGGTGAT+AGG + tig0020668:91287-91306 None:intergenic 30.0%
CTATCACCTATGTATTTCTT+TGG - tig0020668:91285-91304 Msa1384660:intron 30.0%
AACATTCATGTTGTTATAGC+AGG - tig0020668:91423-91442 Msa1384660:CDS 30.0%
ACATTCATGTTGTTATAGCA+GGG - tig0020668:91424-91443 Msa1384660:CDS 30.0%
CACATACTGTGAATAAGTAT+TGG + tig0020668:91454-91473 None:intergenic 30.0%
TTGCTACTGCAATCTAAAAA+AGG + tig0020668:91546-91565 None:intergenic 30.0%
ATACAAGTACTCTATATGCT+AGG + tig0020668:91683-91702 None:intergenic 30.0%
ATGTAGAATCATGTAGAACT+AGG + tig0020668:91724-91743 None:intergenic 30.0%
!!! AGTTTTGAAAAAAAGGTCTG+CGG + tig0020668:91827-91846 None:intergenic 30.0%
!!! CTCTTAAAGGTGGAATTTTT+TGG + tig0020668:92136-92155 None:intergenic 30.0%
! AAAAATTCCACCTTTAAGAG+AGG - tig0020668:92136-92155 Msa1384660:intron 30.0%
!!! ATACGGTTTCTGTTACTTTT+TGG - tig0020668:92161-92180 Msa1384660:intron 30.0%
ATAGTAAAGCCACAATAGAA+TGG - tig0020668:92332-92351 Msa1384660:intron 30.0%
!! TGTTTTATTCTGTATACACC+AGG + tig0020668:92379-92398 None:intergenic 30.0%
! CTAGAGAAAGTGATGATGAA+AGG + tig0020668:86135-86154 None:intergenic 35.0%
TGAGATGAACTAGCTAAACT+TGG - tig0020668:86535-86554 Msa1384660:CDS 35.0%
! GAAATTTCTGAGGACCAAAT+TGG - tig0020668:86844-86863 Msa1384660:intron 35.0%
! AATTTCTGAGGACCAAATTG+GGG - tig0020668:86846-86865 Msa1384660:intron 35.0%
!! CTTGGAAAATTGGTCTTTCT+TGG - tig0020668:86952-86971 Msa1384660:intron 35.0%
! CATTCAAGTTAGAGAGTGAA+GGG + tig0020668:87014-87033 None:intergenic 35.0%
! ACATTCAAGTTAGAGAGTGA+AGG + tig0020668:87015-87034 None:intergenic 35.0%
CACTCTCTAACTTGAATGTT+TGG - tig0020668:87016-87035 Msa1384660:intron 35.0%
TCTCTAACTTGAATGTTTGG+AGG - tig0020668:87019-87038 Msa1384660:intron 35.0%
CTCTAACTTGAATGTTTGGA+GGG - tig0020668:87020-87039 Msa1384660:intron 35.0%
TTTCTGCAACTATGACAGTT+TGG - tig0020668:87043-87062 Msa1384660:intron 35.0%
!! TGTAACTACTTGATTGGTCT+TGG - tig0020668:87114-87133 Msa1384660:intron 35.0%
TGTTAATCTCGATGCTTGTA+TGG - tig0020668:87278-87297 Msa1384660:CDS 35.0%
GTTAATCTCGATGCTTGTAT+GGG - tig0020668:87279-87298 Msa1384660:CDS 35.0%
! CATGGAATCCTATTCTGAAA+AGG + tig0020668:87514-87533 None:intergenic 35.0%
CTTCATCAAACGACTAAGAT+AGG + tig0020668:87551-87570 None:intergenic 35.0%
GTCGTTTGATGAAGATTAGA+CGG - tig0020668:87557-87576 Msa1384660:intron 35.0%
TCACGAAATCAGCTGTAATT+TGG + tig0020668:87591-87610 None:intergenic 35.0%
GTTGTTGGATGAAAATCAGA+TGG + tig0020668:87627-87646 None:intergenic 35.0%
! TATCTTGATGCAGCGAATTT+TGG - tig0020668:87683-87702 Msa1384660:intron 35.0%
! CAATAATGGGATTCAGGAAA+AGG + tig0020668:87714-87733 None:intergenic 35.0%
TTTCCTGAATCCCATTATTG+TGG - tig0020668:87714-87733 Msa1384660:intron 35.0%
TTCCTGAATCCCATTATTGT+GGG - tig0020668:87715-87734 Msa1384660:intron 35.0%
TACAGAACTCCCACAATAAT+GGG + tig0020668:87727-87746 None:intergenic 35.0%
ATGTCAGGACTGTAAAAACA+GGG + tig0020668:87762-87781 None:intergenic 35.0%
AATGTCAGGACTGTAAAAAC+AGG + tig0020668:87763-87782 None:intergenic 35.0%
TTTCTCAATGCCATCAACAA+GGG + tig0020668:87938-87957 None:intergenic 35.0%
! TTTTCTCAATGCCATCAACA+AGG + tig0020668:87939-87958 None:intergenic 35.0%
!! CATTGAGAAAAGCATTGTTC+AGG - tig0020668:87948-87967 Msa1384660:intron 35.0%
!! AGCATTTGTTTTCTTCCCTT+AGG - tig0020668:88027-88046 Msa1384660:intron 35.0%
GGGAACATCAATTTCTTATC+TGG + tig0020668:88273-88292 None:intergenic 35.0%
! CACTTAACCCTTTTGATGAA+AGG - tig0020668:88306-88325 Msa1384660:intron 35.0%
AGACACACCTTTCATCAAAA+GGG + tig0020668:88316-88335 None:intergenic 35.0%
ATTTCTATGATACAAGCAGG+GGG + tig0020668:88444-88463 None:intergenic 35.0%
AGAAAATGAGTGTTACGAGA+TGG - tig0020668:88495-88514 Msa1384660:intron 35.0%
ACCATGAAATATCACCAAAG+GGG + tig0020668:88533-88552 None:intergenic 35.0%
CAACCATGAAATATCACCAA+AGG + tig0020668:88535-88554 None:intergenic 35.0%
GCGAAAAAGTTCTGTAAGAA+AGG - tig0020668:88830-88849 Msa1384660:intron 35.0%
TCTGTAAGAAAGGATTCTGT+TGG - tig0020668:88840-88859 Msa1384660:intron 35.0%
TCTGTTGGATTTGAAGATGA+TGG - tig0020668:88855-88874 Msa1384660:intron 35.0%
!! TATCCGTTGATTTGTTCACA+CGG + tig0020668:89014-89033 None:intergenic 35.0%
AAAAAGAATCGGTGTGTGAT+TGG + tig0020668:89102-89121 None:intergenic 35.0%
!!! ATCACACACCGATTCTTTTT+TGG - tig0020668:89102-89121 Msa1384660:CDS 35.0%
!!! TCACACACCGATTCTTTTTT+GGG - tig0020668:89103-89122 Msa1384660:CDS 35.0%
TCTATCTGTCTTTGTTGCAT+TGG - tig0020668:89227-89246 Msa1384660:intron 35.0%
! GCACTAATTTTGTTCTTTGG+TGG - tig0020668:89266-89285 Msa1384660:intron 35.0%
TCCTCTTAAAGTCTCAATGT+AGG - tig0020668:89357-89376 Msa1384660:intron 35.0%
TGGTACAGATCATGAATTAC+TGG - tig0020668:89536-89555 Msa1384660:intron 35.0%
! TCTAGCAACACTTGAAGTTT+TGG + tig0020668:89604-89623 None:intergenic 35.0%
!! AGGTTTGTTAACCTGTCTAA+GGG + tig0020668:89640-89659 None:intergenic 35.0%
!! TAGGTTTGTTAACCTGTCTA+AGG + tig0020668:89641-89660 None:intergenic 35.0%
TAATCCAGTGTCTGTACAAA+AGG + tig0020668:89724-89743 None:intergenic 35.0%
CGTGTACTTTCAAATTCATC+TGG + tig0020668:89916-89935 None:intergenic 35.0%
GAGACAGTTTAAAAAAGCAG+TGG - tig0020668:89948-89967 Msa1384660:CDS 35.0%
GAGCTTGGAAAAATTTAGGA+AGG + tig0020668:90028-90047 None:intergenic 35.0%
TGCTTAAAATCAAATGCTCC+GGG + tig0020668:90144-90163 None:intergenic 35.0%
!! GGAGCATTTGATTTTAAGCA+AGG - tig0020668:90144-90163 Msa1384660:intron 35.0%
! TTTTAAGCAAGGTGATGATC+AGG - tig0020668:90155-90174 Msa1384660:intron 35.0%
!! TAGGATAATGGGTAAGCATA+TGG + tig0020668:90198-90217 None:intergenic 35.0%
! CAGGCGTTTTCAGTAAATTA+CGG + tig0020668:90286-90305 None:intergenic 35.0%
GTATCAAGCAAAATAGGCTT+TGG + tig0020668:90335-90354 None:intergenic 35.0%
! AAGCCTATTTTGCTTGATAC+TGG - tig0020668:90335-90354 Msa1384660:intron 35.0%
TCACCAGTATCAAGCAAAAT+AGG + tig0020668:90341-90360 None:intergenic 35.0%
TAACTTACAGCCCAATCATA+TGG + tig0020668:90374-90393 None:intergenic 35.0%
AGGGAAGATTAATGGTATAG+AGG - tig0020668:90474-90493 Msa1384660:intron 35.0%
!!! GTATAGAGGCTGTTTTTAAG+AGG - tig0020668:90488-90507 Msa1384660:intron 35.0%
TTTATTCTTAGTGTACCAGG+AGG - tig0020668:90833-90852 Msa1384660:CDS 35.0%
AAATTAAGAACCATACCTCC+TGG + tig0020668:90851-90870 None:intergenic 35.0%
! ACAAGACATTTGGAGTACAT+TGG + tig0020668:91164-91183 None:intergenic 35.0%
AAGCACCCAAAGAAATACAT+AGG + tig0020668:91294-91313 None:intergenic 35.0%
TCTGACAGAATTCACAACAA+TGG - tig0020668:91338-91357 Msa1384660:intron 35.0%
!! GAAGGTCTGTCATTTCTTTT+AGG + tig0020668:91661-91680 None:intergenic 35.0%
AAGTACTCTATATGCTAGGA+AGG + tig0020668:91679-91698 None:intergenic 35.0%
AAAATGTACCTTCGGTCATA+AGG + tig0020668:92207-92226 None:intergenic 35.0%
AAATCATCATCGTCATAAGC+AGG + tig0020668:92268-92287 None:intergenic 35.0%
! ATTTTTGTGTGCGCTTCAAA+TGG - tig0020668:92284-92303 Msa1384660:intron 35.0%
!! CTATGAGTACTGAGTTTGAA+AGG + tig0020668:92316-92335 None:intergenic 35.0%
TGGTATTCTCCATTCTATTG+TGG + tig0020668:92344-92363 None:intergenic 35.0%
AATAGAATGGAGAATACCAC+AGG - tig0020668:92345-92364 Msa1384660:intron 35.0%
!!! AAAACATTTTGGAGCTGCAA+AGG - tig0020668:92393-92412 Msa1384660:intron 35.0%
!!! AAACATTTTGGAGCTGCAAA+GGG - tig0020668:92394-92413 Msa1384660:intron 35.0%
CATTTGTAGTAGCACACTAA+AGG - tig0020668:92458-92477 Msa1384660:five_prime_UTR 35.0%
GATTCATTCTACACGTTCAA+TGG - tig0020668:92495-92514 Msa1384660:five_prime_UTR 35.0%
! TTAAATCTTTTTGTGGGCCT+TGG - tig0020668:92683-92702 Msa1384660:five_prime_UTR 35.0%
! AGTGATGATGAAAGGGAAAG+AGG + tig0020668:86127-86146 None:intergenic 40.0%
ATCACAACTTTACATCTGGG+TGG - tig0020668:86253-86272 Msa1384660:CDS 40.0%
GCAGAGAATTCTAATTTGGG+AGG + tig0020668:86388-86407 None:intergenic 40.0%
CGTAATACCCAAATTAGTCG+CGG - tig0020668:86720-86739 Msa1384660:CDS 40.0%
TCAATGTCCGCGACTAATTT+GGG + tig0020668:86730-86749 None:intergenic 40.0%
TGAAGGGAAATGAGAAGAAC+CGG - tig0020668:86924-86943 Msa1384660:intron 40.0%
! ACCAATTTTCCAAGCTTAGC+CGG + tig0020668:86946-86965 None:intergenic 40.0%
CTTGGAAGCTATGACATTAC+CGG - tig0020668:87132-87151 Msa1384660:intron 40.0%
ATCATGTTAACATCAGCTGC+AGG + tig0020668:87159-87178 None:intergenic 40.0%
TGCAGCTGATGTTAACATGA+TGG - tig0020668:87158-87177 Msa1384660:intron 40.0%
GCAGCTGATGTTAACATGAT+GGG - tig0020668:87159-87178 Msa1384660:intron 40.0%
! TTTTATTGTTGCCGAGCCTA+AGG - tig0020668:87239-87258 Msa1384660:CDS 40.0%
TTTATTGTTGCCGAGCCTAA+GGG - tig0020668:87240-87259 Msa1384660:CDS 40.0%
! AACACTAGCCTATTACCCTT+AGG + tig0020668:87258-87277 None:intergenic 40.0%
TACTTGAGAGGCTTAAAGCA+AGG - tig0020668:87325-87344 Msa1384660:CDS 40.0%
TAGGCAATTGCGTGAATACA+TGG + tig0020668:87532-87551 None:intergenic 40.0%
AATGGGATTCAGGAAAAGGT+TGG + tig0020668:87710-87729 None:intergenic 40.0%
CTACAGAACTCCCACAATAA+TGG + tig0020668:87728-87747 None:intergenic 40.0%
TGTCAGGACTGTAAAAACAG+GGG + tig0020668:87761-87780 None:intergenic 40.0%
TCATTTGATGCCCTTGTTGA+TGG - tig0020668:87925-87944 Msa1384660:intron 40.0%
TGACAAATATTGATCCTGGG+CGG + tig0020668:87987-88006 None:intergenic 40.0%
!!! TCTGGTTTTAGTCAAGACTG+TGG + tig0020668:88255-88274 None:intergenic 40.0%
AAAAGGGTTAAGTGCTACAG+AGG + tig0020668:88300-88319 None:intergenic 40.0%
CAGACACACCTTTCATCAAA+AGG + tig0020668:88317-88336 None:intergenic 40.0%
!! CTTTTGATGAAAGGTGTGTC+TGG - tig0020668:88315-88334 Msa1384660:intron 40.0%
TTTCTATGATACAAGCAGGG+GGG + tig0020668:88443-88462 None:intergenic 40.0%
CATGAAATATCACCAAAGGG+GGG + tig0020668:88531-88550 None:intergenic 40.0%
CCATGAAATATCACCAAAGG+GGG + tig0020668:88532-88551 None:intergenic 40.0%
!! TTCAACTGGTTTGCTACTCA+TGG - tig0020668:88726-88745 Msa1384660:CDS 40.0%
TTGCCGTGTGAACAAATCAA+CGG - tig0020668:89008-89027 Msa1384660:CDS 40.0%
!!! CACACACCGATTCTTTTTTG+GGG - tig0020668:89104-89123 Msa1384660:CDS 40.0%
GTTACACAACTTCACAGTTC+TGG - tig0020668:89310-89329 Msa1384660:intron 40.0%
GCCTACATTGAGACTTTAAG+AGG + tig0020668:89361-89380 None:intergenic 40.0%
! TCAATGTAGGCTGACTTCAA+TGG - tig0020668:89370-89389 Msa1384660:intron 40.0%
! GCTGACTTCAATGGAATTGT+CGG - tig0020668:89379-89398 Msa1384660:intron 40.0%
GATGTTAGTCCGAATGTACT+TGG - tig0020668:89696-89715 Msa1384660:intron 40.0%
CAAAAGGCTCCAAGTACATT+CGG + tig0020668:89708-89727 None:intergenic 40.0%
ACTTCAATCACAGCACATGT+GGG - tig0020668:89751-89770 Msa1384660:intron 40.0%
GGGAAGAATGAGTTATGCTA+TGG - tig0020668:89774-89793 Msa1384660:intron 40.0%
AGAATGAGTTATGCTATGGC+CGG - tig0020668:89778-89797 Msa1384660:intron 40.0%
TAAATAATTACCCAGGTCCC+CGG + tig0020668:89800-89819 None:intergenic 40.0%
AAAGCAGTGGAGCTATTCAA+TGG - tig0020668:89961-89980 Msa1384660:CDS 40.0%
! GGAGCATCTGAACAGATTAA+AGG - tig0020668:89982-90001 Msa1384660:CDS 40.0%
CCTCGAGCTTGGAAAAATTT+AGG + tig0020668:90032-90051 None:intergenic 40.0%
! CCTAAATTTTTCCAAGCTCG+AGG - tig0020668:90029-90048 Msa1384660:CDS 40.0%
AGAAACATTTACCTCGAGCT+TGG + tig0020668:90043-90062 None:intergenic 40.0%
!! GAGGTAAATGTTTCTAGCAG+TGG - tig0020668:90048-90067 Msa1384660:CDS 40.0%
TTTACTGAAAACGCCTGACA+AGG - tig0020668:90289-90308 Msa1384660:intron 40.0%
CCATATAACTAATCTGAGCC+TGG + tig0020668:90435-90454 None:intergenic 40.0%
! CCAGGCTCAGATTAGTTATA+TGG - tig0020668:90432-90451 Msa1384660:intron 40.0%
ATTGCATGACCTGATCTTCT+TGG - tig0020668:90567-90586 Msa1384660:intron 40.0%
CAATCCAAATCCTCCGAATT+GGG - tig0020668:90804-90823 Msa1384660:CDS 40.0%
TAAAAAACTGCCCAATTCGG+AGG + tig0020668:90817-90836 None:intergenic 40.0%
ACAGACTACTCATTAGACCA+AGG + tig0020668:90943-90962 None:intergenic 40.0%
TGAATTGCACAAAGTAGTGC+TGG + tig0020668:91072-91091 None:intergenic 40.0%
ACATAGGTGATAGGACAACT+TGG + tig0020668:91278-91297 None:intergenic 40.0%
ACAGAATTCACAACAATGGC+TGG - tig0020668:91342-91361 Msa1384660:intron 40.0%
CAGAATTCACAACAATGGCT+GGG - tig0020668:91343-91362 Msa1384660:intron 40.0%
! GAGGTCAGTTGTAACTTTTG+TGG - tig0020668:91507-91526 Msa1384660:CDS 40.0%
! TTTGTATTGGCACACAGAGA+TGG - tig0020668:91632-91651 Msa1384660:CDS 40.0%
ATGTATGCACTCAATGTGTG+TGG + tig0020668:91950-91969 None:intergenic 40.0%
CACATTGAGTGCATACATTC+AGG - tig0020668:91952-91971 Msa1384660:intron 40.0%
CTTACTAACACCAGTAGTGA+TGG - tig0020668:92063-92082 Msa1384660:intron 40.0%
! CACCTTTAAGAGAGGTGATA+CGG - tig0020668:92144-92163 Msa1384660:intron 40.0%
AACCGTATCACCTCTCTTAA+AGG + tig0020668:92149-92168 None:intergenic 40.0%
CACCAGAGAAAATGTACCTT+CGG + tig0020668:92215-92234 None:intergenic 40.0%
GAGCTGCAAAGGGTTTATTA+GGG - tig0020668:92404-92423 Msa1384660:intron 40.0%
TGTAGTAGCACACTAAAGGA+AGG - tig0020668:92462-92481 Msa1384660:five_prime_UTR 40.0%
GTAGTAGCACACTAAAGGAA+GGG - tig0020668:92463-92482 Msa1384660:five_prime_UTR 40.0%
TCTGGATAACAAAGGACATG+TGG + tig0020668:92611-92630 None:intergenic 40.0%
AAGACAGACAGACAGAGTTG+TGG + tig0020668:86084-86103 None:intergenic 45.0%
TGATGAAAGGGAAAGAGGAG+TGG + tig0020668:86122-86141 None:intergenic 45.0%
! ATGGGAACTGGGAAGTTTTG+TGG - tig0020668:86492-86511 Msa1384660:CDS 45.0%
!! TGGGAACTGGGAAGTTTTGT+GGG - tig0020668:86493-86512 Msa1384660:CDS 45.0%
GTCAATGTCCGCGACTAATT+TGG + tig0020668:86731-86750 None:intergenic 45.0%
TGAGCAGCGAGAAATTTCTG+AGG - tig0020668:86834-86853 Msa1384660:intron 45.0%
ACCGGCTAAGCTTGGAAAAT+TGG - tig0020668:86942-86961 Msa1384660:intron 45.0%
AACACAGAGCAGATTGCATC+TGG - tig0020668:87189-87208 Msa1384660:intron 45.0%
ACACAGAGCAGATTGCATCT+GGG - tig0020668:87190-87209 Msa1384660:intron 45.0%
! TTGCATCTGGGGTTCACTTT+AGG - tig0020668:87202-87221 Msa1384660:intron 45.0%
TAGCCTATTACCCTTAGGCT+CGG + tig0020668:87253-87272 None:intergenic 45.0%
TCATGAAGTCAAGCTCACGT+AGG + tig0020668:87662-87681 None:intergenic 45.0%
! CTCCCACAATAATGGGATTC+AGG + tig0020668:87720-87739 None:intergenic 45.0%
!! CAACAAGGGCATCAAATGAC+TGG + tig0020668:87924-87943 None:intergenic 45.0%
GGTTAAATTTCTCCCCCCTT+TGG - tig0020668:88516-88535 Msa1384660:intron 45.0%
! CCCCCTTTGGTGATATTTCA+TGG - tig0020668:88529-88548 Msa1384660:intron 45.0%
TATTTGCTTCTCTCTGCAGC+CGG + tig0020668:88636-88655 None:intergenic 45.0%
! TGATGATGAATGGGGTCCTT+CGG - tig0020668:88698-88717 Msa1384660:CDS 45.0%
CTGCACGATTTATGGAAGAC+TGG - tig0020668:88802-88821 Msa1384660:intron 45.0%
!!! TTTTGGGGTGATAAGCAGTG+TGG - tig0020668:89119-89138 Msa1384660:CDS 45.0%
!! ACACTTGAAGTTTTGGTCGC+TGG + tig0020668:89597-89616 None:intergenic 45.0%
! AGTGTTGCTAGACGTGTAAG+AGG - tig0020668:89612-89631 Msa1384660:intron 45.0%
GTGCTGTGATTGAAGTCACA+AGG + tig0020668:89747-89766 None:intergenic 45.0%
GACTTCAATCACAGCACATG+TGG - tig0020668:89750-89769 Msa1384660:intron 45.0%
CTTCAATCACAGCACATGTG+GGG - tig0020668:89752-89771 Msa1384660:intron 45.0%
TTCAATCACAGCACATGTGG+GGG - tig0020668:89753-89772 Msa1384660:intron 45.0%
GAATGAGTTATGCTATGGCC+GGG - tig0020668:89779-89798 Msa1384660:intron 45.0%
AATGAGTTATGCTATGGCCG+GGG - tig0020668:89780-89799 Msa1384660:intron 45.0%
TTCTAGCAGTGGAGCTTCTA+AGG - tig0020668:90059-90078 Msa1384660:CDS 45.0%
ATCCAAATCCCATTGCAGCA+GGG + tig0020668:90098-90117 None:intergenic 45.0%
AATCCAAATCCCATTGCAGC+AGG + tig0020668:90099-90118 None:intergenic 45.0%
!! ATGGGATTTGGATTTGCTGC+TGG - tig0020668:90105-90124 Msa1384660:CDS 45.0%
TTTGCTGCTGGAACAACTGA+TGG - tig0020668:90117-90136 Msa1384660:CDS 45.0%
TACGGACCAGTTTCCAGAAA+GGG + tig0020668:90268-90287 None:intergenic 45.0%
TTACGGACCAGTTTCCAGAA+AGG + tig0020668:90269-90288 None:intergenic 45.0%
CAGGCTATTTGTTCCTTGTC+AGG + tig0020668:90305-90324 None:intergenic 45.0%
TGTCTTATAGTCTCCACTCC+AGG - tig0020668:90414-90433 Msa1384660:intron 45.0%
TAACTAATCTGAGCCTGGAG+TGG + tig0020668:90430-90449 None:intergenic 45.0%
! TGGAAGTATAGTAGGCTGCA+AGG + tig0020668:90786-90805 None:intergenic 45.0%
CCAATTCGGAGGATTTGGAT+TGG + tig0020668:90806-90825 None:intergenic 45.0%
CCAATCCAAATCCTCCGAAT+TGG - tig0020668:90803-90822 Msa1384660:CDS 45.0%
TCTTAGTGTACCAGGAGGTA+TGG - tig0020668:90838-90857 Msa1384660:CDS 45.0%
! GTTTCAAGTGTCAACGACCT+TGG - tig0020668:90923-90942 Msa1384660:intron 45.0%
AATTCACAACAATGGCTGGG+AGG - tig0020668:91346-91365 Msa1384660:intron 45.0%
ACAGTATGTGACCACATACG+AGG - tig0020668:91464-91483 Msa1384660:CDS 45.0%
GTACGAGGTGCAAAGATATG+AGG - tig0020668:91488-91507 Msa1384660:CDS 45.0%
TGCTGCCCATGAAGCAATAT+TGG - tig0020668:91749-91768 Msa1384660:five_prime_UTR 45.0%
GCTGCCCATGAAGCAATATT+GGG - tig0020668:91750-91769 Msa1384660:five_prime_UTR 45.0%
GCCTCCCAATATTGCTTCAT+GGG + tig0020668:91757-91776 None:intergenic 45.0%
TGCCTCCCAATATTGCTTCA+TGG + tig0020668:91758-91777 None:intergenic 45.0%
! TAGGGTGCTTCCACACTTTA+TGG - tig0020668:91923-91942 Msa1384660:intron 45.0%
TGTGTGTGGACCATAAAGTG+TGG + tig0020668:91936-91955 None:intergenic 45.0%
GTAAGCCTATTTGCTTGTCC+AGG + tig0020668:92048-92067 None:intergenic 45.0%
! CTAACACCAGTAGTGATGGA+TGG - tig0020668:92067-92086 Msa1384660:intron 45.0%
CGTATCACCTCTCTTAAAGG+TGG + tig0020668:92146-92165 None:intergenic 45.0%
CGGTCATAAGGTCATTTCGA+GGG + tig0020668:92195-92214 None:intergenic 45.0%
TCGGTCATAAGGTCATTTCG+AGG + tig0020668:92196-92215 None:intergenic 45.0%
CGAAATGACCTTATGACCGA+AGG - tig0020668:92196-92215 Msa1384660:intron 45.0%
!! GACCGAAGGTACATTTTCTC+TGG - tig0020668:92210-92229 Msa1384660:intron 45.0%
!! CGAAGGTACATTTTCTCTGG+TGG - tig0020668:92213-92232 Msa1384660:intron 45.0%
TCTCTGGTGGAATATCTCCA+AGG - tig0020668:92226-92245 Msa1384660:intron 45.0%
CTCTGGTGGAATATCTCCAA+GGG - tig0020668:92227-92246 Msa1384660:intron 45.0%
ATCTCCAAGGGAAGGATACT+TGG - tig0020668:92239-92258 Msa1384660:intron 45.0%
TCTCCAAGGGAAGGATACTT+GGG - tig0020668:92240-92259 Msa1384660:intron 45.0%
GGAGCTGCAAAGGGTTTATT+AGG - tig0020668:92403-92422 Msa1384660:intron 45.0%
! GGGTCAATTCGTCACTTTAC+AGG - tig0020668:92424-92443 Msa1384660:intron 45.0%
!! GTTATTATTAATATATAATT+TGG - tig0020668:92529-92548 Msa1384660:five_prime_UTR 5.0%
TGAAAGGGAAAGAGGAGTGG+AGG + tig0020668:86119-86138 None:intergenic 50.0%
CCAAAGCTTGCAGCAAGTGT+GGG + tig0020668:86201-86220 None:intergenic 50.0%
ACCAAAGCTTGCAGCAAGTG+TGG + tig0020668:86202-86221 None:intergenic 50.0%
TGAGAAGAACCGGCTAAGCT+TGG - tig0020668:86934-86953 Msa1384660:intron 50.0%
GTTAACATCAGCTGCAGGAC+CGG + tig0020668:87154-87173 None:intergenic 50.0%
CACAGAGCAGATTGCATCTG+GGG - tig0020668:87191-87210 Msa1384660:intron 50.0%
!! CTGGGGTTCACTTTAGGTTG+CGG - tig0020668:87208-87227 Msa1384660:intron 50.0%
TTGCCGAGCCTAAGGGTAAT+AGG - tig0020668:87247-87266 Msa1384660:CDS 50.0%
! AGGCATGGGATAACGGTTGT+TGG + tig0020668:87642-87661 None:intergenic 50.0%
CTCACGTAGGCATGGGATAA+CGG + tig0020668:87649-87668 None:intergenic 50.0%
AGTCAAGCTCACGTAGGCAT+GGG + tig0020668:87656-87675 None:intergenic 50.0%
AAGTCAAGCTCACGTAGGCA+TGG + tig0020668:87657-87676 None:intergenic 50.0%
AGTGGAATTCACACCCATGC+TGG - tig0020668:87841-87860 Msa1384660:intron 50.0%
ACATACTGAAGATACCCCCC+AGG + tig0020668:87868-87887 None:intergenic 50.0%
TTAAGTGCTACAGAGGTCGG+GGG + tig0020668:88293-88312 None:intergenic 50.0%
GTTAAGTGCTACAGAGGTCG+GGG + tig0020668:88294-88313 None:intergenic 50.0%
GGTTAAGTGCTACAGAGGTC+GGG + tig0020668:88295-88314 None:intergenic 50.0%
GGGTTAAGTGCTACAGAGGT+CGG + tig0020668:88296-88315 None:intergenic 50.0%
!! TGTCGGTGTCGTATTGGTCT+TGG + tig0020668:88344-88363 None:intergenic 50.0%
!! GACATGTGTCGGTGTCGTAT+TGG + tig0020668:88350-88369 None:intergenic 50.0%
!! AGTATCGGCGTGTTAGTGTC+TGG - tig0020668:88389-88408 Msa1384660:CDS 50.0%
! GCAGGAGAGCTTTTAGATGC+TGG - tig0020668:88576-88595 Msa1384660:CDS 50.0%
GGATTGTTGAGGTAAGCGCT+GGG + tig0020668:88615-88634 None:intergenic 50.0%
CAGCGCTTACCTCAACAATC+CGG - tig0020668:88614-88633 Msa1384660:CDS 50.0%
GATGATGAATGGGGTCCTTC+GGG - tig0020668:88699-88718 Msa1384660:CDS 50.0%
AACCAGTTGAAGCTTCCCGA+AGG + tig0020668:88717-88736 None:intergenic 50.0%
! CAACTTCACAGTTCTGGCGT+TGG - tig0020668:89316-89335 Msa1384660:intron 50.0%
GCATCATTCCAATCTCCTCC+CGG - tig0020668:89567-89586 Msa1384660:intron 50.0%
!! AGTTTTGGTCGCTGGTCTAC+CGG + tig0020668:89589-89608 None:intergenic 50.0%
!! TGTAAGAGGTGCCCTTAGAC+AGG - tig0020668:89626-89645 Msa1384660:intron 50.0%
! GGAGCCTTTTGTACAGACAC+TGG - tig0020668:89717-89736 Msa1384660:intron 50.0%
TCAATCACAGCACATGTGGG+GGG - tig0020668:89754-89773 Msa1384660:intron 50.0%
AAAGACATGCCCTGCTGCAA+TGG - tig0020668:90086-90105 Msa1384660:CDS 50.0%
AAGACATGCCCTGCTGCAAT+GGG - tig0020668:90087-90106 Msa1384660:CDS 50.0%
TGTATCAGGGGAACCCTTTC+TGG - tig0020668:90252-90271 Msa1384660:intron 50.0%
! AATAGGCTTTGGCTGCTGAC+AGG + tig0020668:90324-90343 None:intergenic 50.0%
GTGGACAAGCCAAGAAGATC+AGG + tig0020668:90579-90598 None:intergenic 50.0%
ACTGCCCAATTCGGAGGATT+TGG + tig0020668:90811-90830 None:intergenic 50.0%
GCAGTGAAGACAGTGCTAAG+CGG - tig0020668:91381-91400 Msa1384660:CDS 50.0%
CAGTGAAGACAGTGCTAAGC+GGG - tig0020668:91382-91401 Msa1384660:CDS 50.0%
AGTGAAGACAGTGCTAAGCG+GGG - tig0020668:91383-91402 Msa1384660:CDS 50.0%
CTAAGCGGGGACAAAAGCTT+AGG - tig0020668:91396-91415 Msa1384660:CDS 50.0%
ATTGCTTCATGGGCAGCACA+AGG + tig0020668:91747-91766 None:intergenic 50.0%
GCCCATGAAGCAATATTGGG+AGG - tig0020668:91753-91772 Msa1384660:five_prime_UTR 50.0%
CTTGCACACGCTCTCATCAA+CGG - tig0020668:91986-92005 Msa1384660:intron 50.0%
ATTTGCTTGTCCAGGAGGTC+TGG + tig0020668:92040-92059 None:intergenic 50.0%
GACCTCCTGGACAAGCAAAT+AGG - tig0020668:92040-92059 Msa1384660:intron 50.0%
AGCCTATTTGCTTGTCCAGG+AGG + tig0020668:92045-92064 None:intergenic 50.0%
!! ACCCCTCTTGGTGCAAGTTT+TGG - tig0020668:92091-92110 Msa1384660:intron 50.0%
CCCAAAACTTGCACCAAGAG+GGG + tig0020668:92095-92114 None:intergenic 50.0%
!! CCCCTCTTGGTGCAAGTTTT+GGG - tig0020668:92092-92111 Msa1384660:intron 50.0%
CCCCAAAACTTGCACCAAGA+GGG + tig0020668:92096-92115 None:intergenic 50.0%
!! CCCTCTTGGTGCAAGTTTTG+GGG - tig0020668:92093-92112 Msa1384660:intron 50.0%
TCCCCAAAACTTGCACCAAG+AGG + tig0020668:92097-92116 None:intergenic 50.0%
GGTGGAATATCTCCAAGGGA+AGG - tig0020668:92231-92250 Msa1384660:intron 50.0%
GAACCCAAGTATCCTTCCCT+TGG + tig0020668:92246-92265 None:intergenic 50.0%
GTGTGCGCTTCAAATGGTCA+AGG - tig0020668:92290-92309 Msa1384660:intron 50.0%
ATACCACAGGATGTAGCTCC+TGG - tig0020668:92358-92377 Msa1384660:intron 50.0%
GGAAAGAGGAGTGGAGGAAG+GGG + tig0020668:86113-86132 None:intergenic 55.0%
GGGAAAGAGGAGTGGAGGAA+GGG + tig0020668:86114-86133 None:intergenic 55.0%
AGGGAAAGAGGAGTGGAGGA+AGG + tig0020668:86115-86134 None:intergenic 55.0%
! CCCACACTTGCTGCAAGCTT+TGG - tig0020668:86198-86217 Msa1384660:three_prime_UTR 55.0%
ATTCACACCCATGCTGGTCC+TGG - tig0020668:87847-87866 Msa1384660:intron 55.0%
TTCACACCCATGCTGGTCCT+GGG - tig0020668:87848-87867 Msa1384660:intron 55.0%
GCACATGAAAATCTCCGCCC+AGG - tig0020668:87970-87989 Msa1384660:intron 55.0%
ATCGGCGTGTTAGTGTCTGG+TGG - tig0020668:88392-88411 Msa1384660:CDS 55.0%
CGGATTGTTGAGGTAAGCGC+TGG + tig0020668:88616-88635 None:intergenic 55.0%
TCTCTGCAGCCGGATTGTTG+AGG + tig0020668:88626-88645 None:intergenic 55.0%
GTCCTTCGGGAAGCTTCAAC+TGG - tig0020668:88712-88731 Msa1384660:CDS 55.0%
!! GGGTGCTGCTGCACGATTTA+TGG - tig0020668:88794-88813 Msa1384660:intron 55.0%
!! GTTTTGGTCGCTGGTCTACC+GGG + tig0020668:89588-89607 None:intergenic 55.0%
TGCCCTGCTGCAATGGGATT+TGG - tig0020668:90093-90112 Msa1384660:CDS 55.0%
! GCTGGAACAACTGATGGACC+CGG - tig0020668:90123-90142 Msa1384660:intron 55.0%
! GGGGAACCCTTTCTGGAAAC+TGG - tig0020668:90259-90278 Msa1384660:intron 55.0%
TCACAACAATGGCTGGGAGG+CGG - tig0020668:91349-91368 Msa1384660:intron 55.0%
! GACCACATACGAGGAGTACG+AGG - tig0020668:91473-91492 Msa1384660:CDS 55.0%
CACCTCGTACTCCTCGTATG+TGG + tig0020668:91478-91497 None:intergenic 55.0%
AACGGCCAGCCTGTAGAATC+AGG - tig0020668:92004-92023 Msa1384660:intron 55.0%
GGGGTTCCATCCATCACTAC+TGG + tig0020668:92076-92095 None:intergenic 55.0%
!! GTGATGGATGGAACCCCTCT+TGG - tig0020668:92079-92098 Msa1384660:intron 55.0%
ACACCAGGAGCTACATCCTG+TGG + tig0020668:92364-92383 None:intergenic 55.0%
TCACACCCATGCTGGTCCTG+GGG - tig0020668:87849-87868 Msa1384660:intron 60.0%
ATACCCCCCAGGACCAGCAT+GGG + tig0020668:87857-87876 None:intergenic 60.0%
CTGGTCTACCGGGAGGAGAT+TGG + tig0020668:89578-89597 None:intergenic 60.0%
TTATGCTATGGCCGGGGACC+TGG - tig0020668:89786-89805 Msa1384660:intron 60.0%
TATGCTATGGCCGGGGACCT+GGG - tig0020668:89787-89806 Msa1384660:intron 60.0%
GGTTGCGGGCCTGATTCTAC+AGG + tig0020668:92016-92035 None:intergenic 60.0%
TCCAGGAGGTCTGGTGGTTG+CGG + tig0020668:92031-92050 None:intergenic 60.0%
TGCTTGTCCAGGAGGTCTGG+TGG + tig0020668:92037-92056 None:intergenic 60.0%
CACACCCATGCTGGTCCTGG+GGG - tig0020668:87850-87869 Msa1384660:intron 65.0%
ACACCCATGCTGGTCCTGGG+GGG - tig0020668:87851-87870 Msa1384660:intron 65.0%
GATACCCCCCAGGACCAGCA+TGG + tig0020668:87858-87877 None:intergenic 65.0%
! TTGGTCGCTGGTCTACCGGG+AGG + tig0020668:89585-89604 None:intergenic 65.0%
GCGGGCCTGATTCTACAGGC+TGG + tig0020668:92012-92031 None:intergenic 65.0%
CCAGGAGGTCTGGTGGTTGC+GGG + tig0020668:92030-92049 None:intergenic 65.0%
CCCGCAACCACCAGACCTCC+TGG - tig0020668:92027-92046 Msa1384660:intron 70.0%
Chromosome Type Strat End Strand Name
tig0020668 gene 86013 92708 86013 ID=Msa1384660;Name=Msa1384660
tig0020668 mRNA 86013 92708 86013 ID=Msa1384660-mRNA-1;Parent=Msa1384660;Name=Msa1384660-mRNA-1;_AED=0.03;_eAED=0.03;_QI=336|1|1|1|0.88|0.8|10|231|778
tig0020668 exon 86013 86795 86013 ID=Msa1384660-mRNA-1:exon:9163;Parent=Msa1384660-mRNA-1
tig0020668 exon 87212 87375 87212 ID=Msa1384660-mRNA-1:exon:9162;Parent=Msa1384660-mRNA-1
tig0020668 exon 87867 87930 87867 ID=Msa1384660-mRNA-1:exon:9161;Parent=Msa1384660-mRNA-1
tig0020668 exon 88336 88461 88336 ID=Msa1384660-mRNA-1:exon:9160;Parent=Msa1384660-mRNA-1
tig0020668 exon 88545 88812 88545 ID=Msa1384660-mRNA-1:exon:9159;Parent=Msa1384660-mRNA-1
tig0020668 exon 88913 89177 88913 ID=Msa1384660-mRNA-1:exon:9158;Parent=Msa1384660-mRNA-1
tig0020668 exon 89797 90141 89797 ID=Msa1384660-mRNA-1:exon:9157;Parent=Msa1384660-mRNA-1
tig0020668 exon 90709 90917 90709 ID=Msa1384660-mRNA-1:exon:9156;Parent=Msa1384660-mRNA-1
tig0020668 exon 91375 91792 91375 ID=Msa1384660-mRNA-1:exon:9155;Parent=Msa1384660-mRNA-1
tig0020668 exon 92447 92708 92447 ID=Msa1384660-mRNA-1:exon:9154;Parent=Msa1384660-mRNA-1
tig0020668 five_prime_UTR 92447 92708 92447 ID=Msa1384660-mRNA-1:five_prime_utr;Parent=Msa1384660-mRNA-1
tig0020668 five_prime_UTR 91719 91792 91719 ID=Msa1384660-mRNA-1:five_prime_utr;Parent=Msa1384660-mRNA-1
tig0020668 CDS 91375 91718 91375 ID=Msa1384660-mRNA-1:cds;Parent=Msa1384660-mRNA-1
tig0020668 CDS 90709 90917 90709 ID=Msa1384660-mRNA-1:cds;Parent=Msa1384660-mRNA-1
tig0020668 CDS 89797 90141 89797 ID=Msa1384660-mRNA-1:cds;Parent=Msa1384660-mRNA-1
tig0020668 CDS 88913 89177 88913 ID=Msa1384660-mRNA-1:cds;Parent=Msa1384660-mRNA-1
tig0020668 CDS 88545 88812 88545 ID=Msa1384660-mRNA-1:cds;Parent=Msa1384660-mRNA-1
tig0020668 CDS 88336 88461 88336 ID=Msa1384660-mRNA-1:cds;Parent=Msa1384660-mRNA-1
tig0020668 CDS 87867 87930 87867 ID=Msa1384660-mRNA-1:cds;Parent=Msa1384660-mRNA-1
tig0020668 CDS 87212 87375 87212 ID=Msa1384660-mRNA-1:cds;Parent=Msa1384660-mRNA-1
tig0020668 CDS 86244 86795 86244 ID=Msa1384660-mRNA-1:cds;Parent=Msa1384660-mRNA-1
tig0020668 three_prime_UTR 86013 86243 86013 ID=Msa1384660-mRNA-1:three_prime_utr;Parent=Msa1384660-mRNA-1
Gene Sequence

>Msa1384660

ATGCAGTTCCCTTCACTCTCTAACTTGAATGTTTGGAGGGTTTCTGCAACTATGACAGTTTGGACATTTTTGTTGCTCACAATACTACTACTGAAGAGTGATGTTGCATATTGTAACTACTTGATTGGTCTTGGAAGCTATGACATTACCGGTCCTGCAGCTGATGTTAACATGATGGGCTATGCTAACACAGAGCAGATTGCATCTGGGGTTCACTTTAGGTTGCGGTCTCGTGCTTTTATTGTTGCCGAGCCTAAGGGTAATAGGCTAGTGTTTGTTAATCTCGATGCTTGTATGGGTGCACAGCTTGTTACTATCAAAGTACTTGAGAGGCTTAAAGCAAGATATGGTGATGTATATACAGAAAATAATGTAGCGATTAGTGGAATTCACACCCATGCTGGTCCTGGGGGGTATCTTCAGTATGTTGTGTATATTGTAACATCTCTGGGATTCGTTCGCCAGTCATTTGATGCCCTTGTTGATGGCATTGAGAAAAGCATTGTTCAGGCACATGAAAATCTCCGCCCAGGATCAATATTTGTCAATAAGGGAGAGCTTTTAGATGCTGGTGTTAATCGCAGTCCCAGCGCTTACCTCAACAATCCGGCTGCAGAGAGAAGCAAATACAAATATAACGTTGATAAAGAAATGTCTCTTTTGAAGTTTGTTGATGATGAATGGGGTCCTTCGGGAAGCTTCAACTGGTTTGCTACTCATGGTACTTCAATGAGTCGTACAAATTCATTAATTAGTGGGGATAATAAGGGTGCTGCTGCACGATTTATGGAAGACTGGTTTGAGCGAAAAAGTTCTGTAAGAAAGGATTCTGTTGGATTTGAAGATGATGGCTTACCTCGAAGAATTTCAAACATAATTCCCAGTCTTCATAATAATCATCATGAATTACTGGAACTTGCTGCATCATTCCAATCTCCTCCCGGTAGACCAGCGACCAAAACTTCAAGTGTTGCTAGACGTGTAAGAGGTGCCCTTAGACAGGTTAACAAACCTAGATTTGTATCTGCATTTTGTCAATCAAATTGCGGTGATGTTAGTCCGAATGTACTTGGAGCCTTTTGTACAGACACTGGATTACCTTGTGACTTCAATCACAGCACATGTGGGGGGAAGAATGAGTTATGCTATGGCCGGGGACCTGGTTACCCAGATGAATTTGAAAGTACACGTATTATAGGGGAGAGACAGTTTAAAAAAGCAGTGGAGCTATTCAATGGAGCATCTGAACAGATTAAAGGAAAGGTGGATTTTCGACATGCCTTCCTAAATTTTTCCAAGCTCGAGGTAAATGTTTCTAGCAGTGGAGCTTCTAAGGTAGTAAAGACATGCCCTGCTGCAATGGGATTTGGATTTGCTGCTGGAACAACTGATGGACCCGGAGCATTTGATTTTAAGCAAGGTGATGATCAGGGGAACCCTTTCTGGAAACTGGTCCGTAATTTACTGAAAACGCCTGACAAGGAACAAATAGCCTGTCAGCAGCCAAAGCCTATTTTGCTTGATACTGGTGAAATGAAGCTTCCATATGATTGGGCTCCTACTATACTTCCAATCCAAATCCTCCGAATTGGGCAGTTTTTTATTCTTAGTGTACCAGGAGAATTCACAACAATGGCTGGGAGGCGGCTTCGTGATGCAGTGAAGACAGTGCTAAGCGGGGACAAAAGCTTAGGTAGCAACATTCATGTTGTTATAGCAGGGTTGACCAATACTTATTCACAGTATGTGACCACATACGAGGAGTACGAGGTGCAAAGATATGAGGGTGCTTCCACACTTTATGGTCCACACACATTGAGTGCATACATTCAGGAATTCAAGAAGCTTGCACACGCTCTCATCAACGGCCAGCCTGTAGAATCAGGCCCGCAACCACCAGACCTCCTGGACAAGCAAATAGGCTTACTAACACCAGTAGTGATGGATGGAACCCCTCTTGGTGCAAGTTTTGGGGATTGTAGTTCTGATGTGCCAAAAAATTCCACCTTTAAGAGAGGTGATACGGTTTCTGTTACTTTTTGGTCTGCTTGCCCTCGAAATGACCTTATGACCGAAGGTACATTTTCTCTGGTGGAATATCTCCAAGGGAAGGATACTTGGGTTCCTGCTTATGACGATGATGATTTTTGTGTGCGCTTCAAATGGTCAAGGCCTTTCAAACTCAGTACTCATAGTAAAGCCACAATAGAATGGAGAATACCACAGGATGTAGCTCCTGGTGTATACAGAATAAAACATTTTGGAGCTGCAAAGGGTTTATTAGGGTCAATTCGTCACTTTACAGGTTCATCTAGTGCATTTGTAGTAGCACACTAA
Protein sequence

>Msa1384660

MQFPSLSNLNVWRVSATMTVWTFLLLTILLLKSDVAYCNYLIGLGSYDITGPAADVNMMGYANTEQIASGVHFRLRSRAFIVAEPKGNRLVFVNLDACMGAQLVTIKVLERLKARYGDVYTENNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSIVQAHENLRPGSIFVNKGELLDAGVNRSPSAYLNNPAAERSKYKYNVDKEMSLLKFVDDEWGPSGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFERKSSVRKDSVGFEDDGLPRRISNIIPSLHNNHHELLELAASFQSPPGRPATKTSSVARRVRGALRQVNKPRFVSAFCQSNCGDVSPNVLGAFCTDTGLPCDFNHSTCGGKNELCYGRGPGYPDEFESTRIIGERQFKKAVELFNGASEQIKGKVDFRHAFLNFSKLEVNVSSSGASKVVKTCPAAMGFGFAAGTTDGPGAFDFKQGDDQGNPFWKLVRNLLKTPDKEQIACQQPKPILLDTGEMKLPYDWAPTILPIQILRIGQFFILSVPGEFTTMAGRRLRDAVKTVLSGDKSLGSNIHVVIAGLTNTYSQYVTTYEEYEVQRYEGASTLYGPHTLSAYIQEFKKLAHALINGQPVESGPQPPDLLDKQIGLLTPVVMDGTPLGASFGDCSSDVPKNSTFKRGDTVSVTFWSACPRNDLMTEGTFSLVEYLQGKDTWVPAYDDDDFCVRFKWSRPFKLSTHSKATIEWRIPQDVAPGVYRIKHFGAAKGLLGSIRHFTGSSSAFVVAH*