Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789900 | BAB70616.1 | 99.065 | 214 | 2 | 0 | 1 | 214 | 1 | 214 | 1.69e-155 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789900 | sp|P30109|GSTF1_TOBAC | 63.285 | 207 | 76 | 0 | 3 | 209 | 2 | 208 | 1.15e-95 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789900 | Q948X4 | 99.065 | 214 | 2 | 0 | 1 | 214 | 1 | 214 | 8.06e-156 | 439 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037500 | Msa0789900 | 0.830792 | 2.405968e-55 | -8.615850e-47 |
| Msa0129150 | Msa0789900 | 0.832215 | 1.073258e-55 | -8.615850e-47 |
| Msa0174960 | Msa0789900 | 0.859762 | 3.305849e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789900 | MtrunA17_Chr1g0195821 | 93.925 | 214 | 13 | 0 | 1 | 214 | 1 | 214 | 8.61e-151 | 417 |
| Msa0789900 | MtrunA17_Chr1g0195811 | 88.785 | 214 | 24 | 0 | 1 | 214 | 1 | 214 | 2.09e-143 | 398 |
| Msa0789900 | MtrunA17_Chr3g0109891 | 42.995 | 207 | 117 | 1 | 3 | 208 | 2 | 208 | 5.07e-57 | 179 |
| Msa0789900 | MtrunA17_Chr1g0195831 | 39.423 | 208 | 125 | 1 | 4 | 210 | 3 | 210 | 1.22e-55 | 176 |
| Msa0789900 | MtrunA17_Chr3g0095781 | 41.429 | 210 | 121 | 2 | 3 | 211 | 2 | 210 | 1.29e-55 | 176 |
| Msa0789900 | MtrunA17_Chr1g0157211 | 40.455 | 220 | 124 | 4 | 1 | 213 | 1 | 220 | 1.11e-53 | 171 |
| Msa0789900 | MtrunA17_Chr5g0442751 | 41.429 | 210 | 118 | 4 | 3 | 209 | 2 | 209 | 2.55e-51 | 165 |
| Msa0789900 | MtrunA17_Chr5g0442741 | 38.863 | 211 | 126 | 3 | 3 | 211 | 2 | 211 | 2.48e-49 | 160 |
| Msa0789900 | MtrunA17_Chr3g0095821 | 44.512 | 164 | 90 | 1 | 49 | 211 | 1 | 164 | 2.92e-46 | 150 |
| Msa0789900 | MtrunA17_Chr1g0198101 | 89.706 | 68 | 7 | 0 | 147 | 214 | 1 | 68 | 3.32e-40 | 132 |
| Msa0789900 | MtrunA17_Chr8g0386711 | 27.397 | 146 | 106 | 0 | 4 | 149 | 3 | 148 | 3.13e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789900 | AT1G02930.2 | 59.330 | 209 | 84 | 1 | 1 | 209 | 1 | 208 | 9.04e-87 | 255 |
| Msa0789900 | AT1G02930.1 | 59.330 | 209 | 84 | 1 | 1 | 209 | 1 | 208 | 9.04e-87 | 255 |
| Msa0789900 | AT1G02920.1 | 59.809 | 209 | 84 | 0 | 1 | 209 | 1 | 209 | 3.96e-86 | 253 |
| Msa0789900 | AT2G02930.1 | 58.962 | 212 | 84 | 1 | 1 | 209 | 1 | 212 | 4.01e-86 | 254 |
| Msa0789900 | AT4G02520.1 | 57.820 | 211 | 86 | 1 | 1 | 208 | 1 | 211 | 1.31e-85 | 252 |
| Msa0789900 | AT2G47730.2 | 55.122 | 205 | 91 | 1 | 6 | 209 | 54 | 258 | 8.18e-83 | 247 |
| Msa0789900 | AT2G47730.1 | 55.122 | 205 | 91 | 1 | 6 | 209 | 54 | 258 | 8.18e-83 | 247 |
| Msa0789900 | AT1G02950.2 | 51.942 | 206 | 98 | 1 | 1 | 205 | 24 | 229 | 7.90e-77 | 231 |
| Msa0789900 | AT1G02950.3 | 52.475 | 202 | 95 | 1 | 5 | 205 | 26 | 227 | 1.62e-76 | 230 |
| Msa0789900 | AT1G02950.1 | 52.475 | 202 | 95 | 1 | 5 | 205 | 26 | 227 | 1.62e-76 | 230 |
| Msa0789900 | AT1G02950.5 | 52.475 | 202 | 95 | 1 | 5 | 205 | 38 | 239 | 2.72e-76 | 230 |
| Msa0789900 | AT1G02940.4 | 46.602 | 206 | 109 | 1 | 5 | 209 | 40 | 245 | 6.76e-67 | 206 |
| Msa0789900 | AT1G02940.1 | 46.602 | 206 | 109 | 1 | 5 | 209 | 40 | 245 | 6.76e-67 | 206 |
| Msa0789900 | AT1G02940.3 | 46.602 | 206 | 109 | 1 | 5 | 209 | 53 | 258 | 1.06e-66 | 206 |
| Msa0789900 | AT1G02940.2 | 46.602 | 206 | 109 | 1 | 5 | 209 | 65 | 270 | 1.43e-66 | 206 |
| Msa0789900 | AT3G62760.1 | 45.631 | 206 | 111 | 1 | 4 | 208 | 3 | 208 | 3.01e-61 | 191 |
| Msa0789900 | AT1G49860.1 | 48.205 | 195 | 97 | 2 | 21 | 211 | 22 | 216 | 7.84e-58 | 183 |
| Msa0789900 | AT3G03190.1 | 42.381 | 210 | 120 | 1 | 3 | 211 | 2 | 211 | 3.47e-54 | 172 |
| Msa0789900 | AT5G17220.1 | 38.571 | 210 | 128 | 1 | 3 | 211 | 2 | 211 | 2.94e-51 | 165 |
| Msa0789900 | AT2G30860.1 | 37.321 | 209 | 129 | 2 | 3 | 210 | 2 | 209 | 4.09e-47 | 154 |
| Msa0789900 | AT2G30870.1 | 36.946 | 203 | 127 | 1 | 9 | 210 | 7 | 209 | 1.28e-45 | 150 |
| Msa0789900 | AT1G02950.4 | 47.887 | 142 | 73 | 1 | 65 | 205 | 60 | 201 | 9.93e-44 | 146 |
| Msa0789900 | AT2G30860.2 | 35.294 | 153 | 98 | 1 | 3 | 155 | 2 | 153 | 2.62e-29 | 107 |
Find 53 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGGGATTAAGACTTTATT+TGG | 0.143067 | 5_3:+545049 | Msa0789900:CDS |
| GGAGTCACTGCTTGTTAAAT+TGG | 0.233814 | 5_3:-544945 | None:intergenic |
| ACTCATTATTGCCATCTTCT+TGG | 0.252577 | 5_3:-544966 | None:intergenic |
| GATGGAGATTTAAAGCTCTT+TGG | 0.296201 | 5_3:+544693 | Msa0789900:CDS |
| GACTTTATTTGGAATTCCTT+TGG | 0.310575 | 5_3:+545060 | Msa0789900:CDS |
| CGCATGGTGGCCGTTGAGAT+AGG | 0.336998 | 5_3:-544428 | None:intergenic |
| TCAATACTTGTTTGGGAACT+AGG | 0.337085 | 5_3:+545031 | Msa0789900:CDS |
| AAGTAGCATCAATACTTGTT+TGG | 0.355376 | 5_3:+545023 | Msa0789900:CDS |
| GAGGAATGGTGAACACAAAA+AGG | 0.363061 | 5_3:+544508 | Msa0789900:CDS |
| AGTAGCATCAATACTTGTTT+GGG | 0.373002 | 5_3:+545024 | Msa0789900:CDS |
| TTCTTTATGTTGCAGCCATT+TGG | 0.379956 | 5_3:+544651 | Msa0789900:intron |
| GATCATGAGTATGCTGATAA+GGG | 0.387666 | 5_3:+544920 | Msa0789900:CDS |
| TGATCATGAGTATGCTGATA+AGG | 0.403067 | 5_3:+544919 | Msa0789900:CDS |
| CAAGACCTTATGTTAATGCT+TGG | 0.407435 | 5_3:+545257 | Msa0789900:CDS |
| AAGACCTTATGTTAATGCTT+GGG | 0.420971 | 5_3:+545258 | Msa0789900:CDS |
| AAATCTCCATCTTCAAAAGC+TGG | 0.446504 | 5_3:-544681 | None:intergenic |
| ATGATCTTAATTAGGTATCA+TGG | 0.448138 | 5_3:-545323 | None:intergenic |
| GCTTACATTGATTGATATGA+AGG | 0.465911 | 5_3:-544534 | None:intergenic |
| ATGCTACTTTATCGTAGTGT+AGG | 0.467657 | 5_3:-545009 | None:intergenic |
| CAATACTTGTTTGGGAACTA+GGG | 0.472992 | 5_3:+545032 | Msa0789900:CDS |
| CAGATATGTATGTAGTACTA+TGG | 0.479242 | 5_3:-544372 | None:intergenic |
| AAAGCTGGAACTTGACCAAA+TGG | 0.480424 | 5_3:-544666 | None:intergenic |
| TCCTTTGGATTCAAAAGTTG+TGG | 0.481662 | 5_3:+545075 | Msa0789900:CDS |
| ATCAAGAATGCTATCCAACT+TGG | 0.507885 | 5_3:-545110 | None:intergenic |
| AATGAGTGTGTGGTCGGAAG+TGG | 0.508607 | 5_3:+544982 | Msa0789900:CDS |
| AGGTGAGTGTTTCACCTTGG+TGG | 0.510447 | 5_3:+545171 | Msa0789900:CDS |
| GCATGGTGGCCGTTGAGATA+GGG | 0.515923 | 5_3:-544427 | None:intergenic |
| TCAACCCAAGCATTAACATA+AGG | 0.524477 | 5_3:-545262 | None:intergenic |
| ATTGTCTGAATCTAAATACA+TGG | 0.527540 | 5_3:+545147 | Msa0789900:CDS |
| TATCTCAACGGCCACCATGC+GGG | 0.531171 | 5_3:+544430 | Msa0789900:CDS |
| GGAAGAGAATGAAGCCAAGT+TGG | 0.538389 | 5_3:+545096 | Msa0789900:CDS |
| ACATACATATCTGCAAATCA+TGG | 0.544335 | 5_3:+544382 | Msa0789900:exon |
| AAAATTGAAATGCAGAGTCA+AGG | 0.547213 | 5_3:+544879 | Msa0789900:intron |
| AAATTGAAATGCAGAGTCAA+GGG | 0.557402 | 5_3:+544880 | Msa0789900:intron |
| TTCATCAAGTAGTGAAGAGA+AGG | 0.557567 | 5_3:-545208 | None:intergenic |
| GTAAGCATTAACATGAGGAA+TGG | 0.557734 | 5_3:+544494 | Msa0789900:CDS |
| AAGCAGTGACTCCAAGAAGA+TGG | 0.558112 | 5_3:+544955 | Msa0789900:CDS |
| GCAAGTACTTTAGACCAAGC+TGG | 0.578209 | 5_3:-545301 | None:intergenic |
| CTTACATTGATTGATATGAA+GGG | 0.578372 | 5_3:-544533 | None:intergenic |
| GGCAATAATGAGTGTGTGGT+CGG | 0.583453 | 5_3:+544976 | Msa0789900:CDS |
| ATATCACTGCAAGACCAGCT+TGG | 0.601324 | 5_3:+545287 | Msa0789900:CDS |
| ATCATGAGTATGCTGATAAG+GGG | 0.613962 | 5_3:+544921 | Msa0789900:CDS |
| GCACGGAAGCCCTATCTCAA+CGG | 0.620985 | 5_3:+544418 | Msa0789900:CDS |
| CTATCTCAACGGCCACCATG+CGG | 0.624610 | 5_3:+544429 | Msa0789900:CDS |
| AGTTTGTAAGCATTAACATG+AGG | 0.629431 | 5_3:+544489 | Msa0789900:CDS |
| GGGAGGTGAGTGTTTCACCT+TGG | 0.632509 | 5_3:+545168 | Msa0789900:CDS |
| ATGGCAACAATAAAAGTGCA+CGG | 0.649349 | 5_3:+544401 | Msa0789900:CDS |
| TTGTCTGAATCTAAATACAT+GGG | 0.650116 | 5_3:+545148 | Msa0789900:CDS |
| CAGAGTTGCAGTAACCCGCA+TGG | 0.653094 | 5_3:-544444 | None:intergenic |
| TCTGAATCTAAATACATGGG+AGG | 0.678031 | 5_3:+545151 | Msa0789900:CDS |
| AGTTGCAGTAACCCGCATGG+TGG | 0.707787 | 5_3:-544441 | None:intergenic |
| TAAATGATGCAAATCCACCA+AGG | 0.710594 | 5_3:-545185 | None:intergenic |
| AGATGGCAATAATGAGTGTG+TGG | 0.714038 | 5_3:+544972 | Msa0789900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACCTAATTAAGATCATTTT+TGG | + | chr5_3:545329-545348 | Msa0789900:exon | 20.0% |
| !!! | ACCTAATTAAGATCATTTTT+GGG | + | chr5_3:545330-545349 | Msa0789900:exon | 20.0% |
| !!! | TACCTAATTAAGATCATTTT+TGG | + | chr5_3:545329-545348 | Msa0789900:exon | 20.0% |
| !!! | ACCTAATTAAGATCATTTTT+GGG | + | chr5_3:545330-545349 | Msa0789900:exon | 20.0% |
| !! | CTTACATTGATTGATATGAA+GGG | - | chr5_3:544536-544555 | None:intergenic | 25.0% |
| !! | ATCAATTAGTTTGATCAATG+TGG | - | chr5_3:544628-544647 | None:intergenic | 25.0% |
| ! | ATTGTCTGAATCTAAATACA+TGG | + | chr5_3:545147-545166 | Msa0789900:CDS | 25.0% |
| ! | TTGTCTGAATCTAAATACAT+GGG | + | chr5_3:545148-545167 | Msa0789900:CDS | 25.0% |
| ! | ATGATCTTAATTAGGTATCA+TGG | - | chr5_3:545326-545345 | None:intergenic | 25.0% |
| ! | TCCCAAAAATGATCTTAATT+AGG | - | chr5_3:545334-545353 | None:intergenic | 25.0% |
| !!! | AAGATCATTTTTGGGATATT+TGG | + | chr5_3:545338-545357 | Msa0789900:exon | 25.0% |
| !!! | AGATCATTTTTGGGATATTT+GGG | + | chr5_3:545339-545358 | Msa0789900:exon | 25.0% |
| !! | CTTACATTGATTGATATGAA+GGG | - | chr5_3:544536-544555 | None:intergenic | 25.0% |
| !! | ATCAATTAGTTTGATCAATG+TGG | - | chr5_3:544628-544647 | None:intergenic | 25.0% |
| ! | ATTGTCTGAATCTAAATACA+TGG | + | chr5_3:545147-545166 | Msa0789900:CDS | 25.0% |
| ! | TTGTCTGAATCTAAATACAT+GGG | + | chr5_3:545148-545167 | Msa0789900:CDS | 25.0% |
| ! | ATGATCTTAATTAGGTATCA+TGG | - | chr5_3:545326-545345 | None:intergenic | 25.0% |
| ! | TCCCAAAAATGATCTTAATT+AGG | - | chr5_3:545334-545353 | None:intergenic | 25.0% |
| !!! | AAGATCATTTTTGGGATATT+TGG | + | chr5_3:545338-545357 | Msa0789900:exon | 25.0% |
| !!! | AGATCATTTTTGGGATATTT+GGG | + | chr5_3:545339-545358 | Msa0789900:exon | 25.0% |
| CAGATATGTATGTAGTACTA+TGG | - | chr5_3:544375-544394 | None:intergenic | 30.0% | |
| ACATACATATCTGCAAATCA+TGG | + | chr5_3:544382-544401 | Msa0789900:exon | 30.0% | |
| AGTTTGTAAGCATTAACATG+AGG | + | chr5_3:544489-544508 | Msa0789900:CDS | 30.0% | |
| ! | GCTTACATTGATTGATATGA+AGG | - | chr5_3:544537-544556 | None:intergenic | 30.0% |
| ! | ATTAGTTTGATCAATGTGGT+TGG | - | chr5_3:544624-544643 | None:intergenic | 30.0% |
| AAAATTGAAATGCAGAGTCA+AGG | + | chr5_3:544879-544898 | Msa0789900:intron | 30.0% | |
| AAATTGAAATGCAGAGTCAA+GGG | + | chr5_3:544880-544899 | Msa0789900:intron | 30.0% | |
| AAGTAGCATCAATACTTGTT+TGG | + | chr5_3:545023-545042 | Msa0789900:CDS | 30.0% | |
| AGTAGCATCAATACTTGTTT+GGG | + | chr5_3:545024-545043 | Msa0789900:CDS | 30.0% | |
| CTAGGGATTAAGACTTTATT+TGG | + | chr5_3:545049-545068 | Msa0789900:CDS | 30.0% | |
| ! | GACTTTATTTGGAATTCCTT+TGG | + | chr5_3:545060-545079 | Msa0789900:CDS | 30.0% |
| AAGACCTTATGTTAATGCTT+GGG | + | chr5_3:545258-545277 | Msa0789900:CDS | 30.0% | |
| !!! | GATATTTGGGTGTTGTTTTA+TGG | + | chr5_3:545352-545371 | Msa0789900:three_prime_UTR | 30.0% |
| CAGATATGTATGTAGTACTA+TGG | - | chr5_3:544375-544394 | None:intergenic | 30.0% | |
| ACATACATATCTGCAAATCA+TGG | + | chr5_3:544382-544401 | Msa0789900:exon | 30.0% | |
| AGTTTGTAAGCATTAACATG+AGG | + | chr5_3:544489-544508 | Msa0789900:CDS | 30.0% | |
| ! | GCTTACATTGATTGATATGA+AGG | - | chr5_3:544537-544556 | None:intergenic | 30.0% |
| ! | ATTAGTTTGATCAATGTGGT+TGG | - | chr5_3:544624-544643 | None:intergenic | 30.0% |
| AAAATTGAAATGCAGAGTCA+AGG | + | chr5_3:544879-544898 | Msa0789900:intron | 30.0% | |
| AAATTGAAATGCAGAGTCAA+GGG | + | chr5_3:544880-544899 | Msa0789900:intron | 30.0% | |
| AAGTAGCATCAATACTTGTT+TGG | + | chr5_3:545023-545042 | Msa0789900:CDS | 30.0% | |
| AGTAGCATCAATACTTGTTT+GGG | + | chr5_3:545024-545043 | Msa0789900:CDS | 30.0% | |
| CTAGGGATTAAGACTTTATT+TGG | + | chr5_3:545049-545068 | Msa0789900:CDS | 30.0% | |
| ! | GACTTTATTTGGAATTCCTT+TGG | + | chr5_3:545060-545079 | Msa0789900:CDS | 30.0% |
| AAGACCTTATGTTAATGCTT+GGG | + | chr5_3:545258-545277 | Msa0789900:CDS | 30.0% | |
| !!! | GATATTTGGGTGTTGTTTTA+TGG | + | chr5_3:545352-545371 | Msa0789900:three_prime_UTR | 30.0% |
| ! | ATGGCAACAATAAAAGTGCA+CGG | + | chr5_3:544401-544420 | Msa0789900:CDS | 35.0% |
| GTAAGCATTAACATGAGGAA+TGG | + | chr5_3:544494-544513 | Msa0789900:CDS | 35.0% | |
| TTCTTTATGTTGCAGCCATT+TGG | + | chr5_3:544651-544670 | Msa0789900:intron | 35.0% | |
| AAATCTCCATCTTCAAAAGC+TGG | - | chr5_3:544684-544703 | None:intergenic | 35.0% | |
| ! | GATGGAGATTTAAAGCTCTT+TGG | + | chr5_3:544693-544712 | Msa0789900:CDS | 35.0% |
| TGATCATGAGTATGCTGATA+AGG | + | chr5_3:544919-544938 | Msa0789900:CDS | 35.0% | |
| GATCATGAGTATGCTGATAA+GGG | + | chr5_3:544920-544939 | Msa0789900:CDS | 35.0% | |
| ATCATGAGTATGCTGATAAG+GGG | + | chr5_3:544921-544940 | Msa0789900:CDS | 35.0% | |
| ACTCATTATTGCCATCTTCT+TGG | - | chr5_3:544969-544988 | None:intergenic | 35.0% | |
| !! | ATGCTACTTTATCGTAGTGT+AGG | - | chr5_3:545012-545031 | None:intergenic | 35.0% |
| TCAATACTTGTTTGGGAACT+AGG | + | chr5_3:545031-545050 | Msa0789900:CDS | 35.0% | |
| CAATACTTGTTTGGGAACTA+GGG | + | chr5_3:545032-545051 | Msa0789900:CDS | 35.0% | |
| TCCTTTGGATTCAAAAGTTG+TGG | + | chr5_3:545075-545094 | Msa0789900:CDS | 35.0% | |
| ! | TCCACAACTTTTGAATCCAA+AGG | - | chr5_3:545079-545098 | None:intergenic | 35.0% |
| ATCAAGAATGCTATCCAACT+TGG | - | chr5_3:545113-545132 | None:intergenic | 35.0% | |
| TCTGAATCTAAATACATGGG+AGG | + | chr5_3:545151-545170 | Msa0789900:CDS | 35.0% | |
| TAAATGATGCAAATCCACCA+AGG | - | chr5_3:545188-545207 | None:intergenic | 35.0% | |
| TTCATCAAGTAGTGAAGAGA+AGG | - | chr5_3:545211-545230 | None:intergenic | 35.0% | |
| CAAGACCTTATGTTAATGCT+TGG | + | chr5_3:545257-545276 | Msa0789900:CDS | 35.0% | |
| TCAACCCAAGCATTAACATA+AGG | - | chr5_3:545265-545284 | None:intergenic | 35.0% | |
| ! | ATGGCAACAATAAAAGTGCA+CGG | + | chr5_3:544401-544420 | Msa0789900:CDS | 35.0% |
| GTAAGCATTAACATGAGGAA+TGG | + | chr5_3:544494-544513 | Msa0789900:CDS | 35.0% | |
| TTCTTTATGTTGCAGCCATT+TGG | + | chr5_3:544651-544670 | Msa0789900:intron | 35.0% | |
| AAATCTCCATCTTCAAAAGC+TGG | - | chr5_3:544684-544703 | None:intergenic | 35.0% | |
| ! | GATGGAGATTTAAAGCTCTT+TGG | + | chr5_3:544693-544712 | Msa0789900:CDS | 35.0% |
| TGATCATGAGTATGCTGATA+AGG | + | chr5_3:544919-544938 | Msa0789900:CDS | 35.0% | |
| GATCATGAGTATGCTGATAA+GGG | + | chr5_3:544920-544939 | Msa0789900:CDS | 35.0% | |
| ATCATGAGTATGCTGATAAG+GGG | + | chr5_3:544921-544940 | Msa0789900:CDS | 35.0% | |
| ACTCATTATTGCCATCTTCT+TGG | - | chr5_3:544969-544988 | None:intergenic | 35.0% | |
| !! | ATGCTACTTTATCGTAGTGT+AGG | - | chr5_3:545012-545031 | None:intergenic | 35.0% |
| TCAATACTTGTTTGGGAACT+AGG | + | chr5_3:545031-545050 | Msa0789900:CDS | 35.0% | |
| CAATACTTGTTTGGGAACTA+GGG | + | chr5_3:545032-545051 | Msa0789900:CDS | 35.0% | |
| TCCTTTGGATTCAAAAGTTG+TGG | + | chr5_3:545075-545094 | Msa0789900:CDS | 35.0% | |
| ! | TCCACAACTTTTGAATCCAA+AGG | - | chr5_3:545079-545098 | None:intergenic | 35.0% |
| ATCAAGAATGCTATCCAACT+TGG | - | chr5_3:545113-545132 | None:intergenic | 35.0% | |
| TCTGAATCTAAATACATGGG+AGG | + | chr5_3:545151-545170 | Msa0789900:CDS | 35.0% | |
| TAAATGATGCAAATCCACCA+AGG | - | chr5_3:545188-545207 | None:intergenic | 35.0% | |
| TTCATCAAGTAGTGAAGAGA+AGG | - | chr5_3:545211-545230 | None:intergenic | 35.0% | |
| CAAGACCTTATGTTAATGCT+TGG | + | chr5_3:545257-545276 | Msa0789900:CDS | 35.0% | |
| TCAACCCAAGCATTAACATA+AGG | - | chr5_3:545265-545284 | None:intergenic | 35.0% | |
| GAGGAATGGTGAACACAAAA+AGG | + | chr5_3:544508-544527 | Msa0789900:CDS | 40.0% | |
| TCAATGTGGTTGGAACAAGA+AGG | - | chr5_3:544614-544633 | None:intergenic | 40.0% | |
| AAAGCTGGAACTTGACCAAA+TGG | - | chr5_3:544669-544688 | None:intergenic | 40.0% | |
| !! | CAAGTTCCAGCTTTTGAAGA+TGG | + | chr5_3:544675-544694 | Msa0789900:CDS | 40.0% |
| ! | GGAGTCACTGCTTGTTAAAT+TGG | - | chr5_3:544948-544967 | None:intergenic | 40.0% |
| AGATGGCAATAATGAGTGTG+TGG | + | chr5_3:544972-544991 | Msa0789900:CDS | 40.0% | |
| GAGGAATGGTGAACACAAAA+AGG | + | chr5_3:544508-544527 | Msa0789900:CDS | 40.0% | |
| TCAATGTGGTTGGAACAAGA+AGG | - | chr5_3:544614-544633 | None:intergenic | 40.0% | |
| AAAGCTGGAACTTGACCAAA+TGG | - | chr5_3:544669-544688 | None:intergenic | 40.0% | |
| !! | CAAGTTCCAGCTTTTGAAGA+TGG | + | chr5_3:544675-544694 | Msa0789900:CDS | 40.0% |
| ! | GGAGTCACTGCTTGTTAAAT+TGG | - | chr5_3:544948-544967 | None:intergenic | 40.0% |
| AGATGGCAATAATGAGTGTG+TGG | + | chr5_3:544972-544991 | Msa0789900:CDS | 40.0% | |
| GACACGATATCAAACACACG+TGG | + | chr5_3:544777-544796 | Msa0789900:intron | 45.0% | |
| AAGCAGTGACTCCAAGAAGA+TGG | + | chr5_3:544955-544974 | Msa0789900:CDS | 45.0% | |
| GGCAATAATGAGTGTGTGGT+CGG | + | chr5_3:544976-544995 | Msa0789900:CDS | 45.0% | |
| GGAAGAGAATGAAGCCAAGT+TGG | + | chr5_3:545096-545115 | Msa0789900:CDS | 45.0% | |
| ATATCACTGCAAGACCAGCT+TGG | + | chr5_3:545287-545306 | Msa0789900:CDS | 45.0% | |
| GCAAGTACTTTAGACCAAGC+TGG | - | chr5_3:545304-545323 | None:intergenic | 45.0% | |
| GACACGATATCAAACACACG+TGG | + | chr5_3:544777-544796 | Msa0789900:intron | 45.0% | |
| AAGCAGTGACTCCAAGAAGA+TGG | + | chr5_3:544955-544974 | Msa0789900:CDS | 45.0% | |
| GGCAATAATGAGTGTGTGGT+CGG | + | chr5_3:544976-544995 | Msa0789900:CDS | 45.0% | |
| GGAAGAGAATGAAGCCAAGT+TGG | + | chr5_3:545096-545115 | Msa0789900:CDS | 45.0% | |
| ATATCACTGCAAGACCAGCT+TGG | + | chr5_3:545287-545306 | Msa0789900:CDS | 45.0% | |
| GCAAGTACTTTAGACCAAGC+TGG | - | chr5_3:545304-545323 | None:intergenic | 45.0% | |
| AATGAGTGTGTGGTCGGAAG+TGG | + | chr5_3:544982-545001 | Msa0789900:CDS | 50.0% | |
| AGGTGAGTGTTTCACCTTGG+TGG | + | chr5_3:545171-545190 | Msa0789900:CDS | 50.0% | |
| AATGAGTGTGTGGTCGGAAG+TGG | + | chr5_3:544982-545001 | Msa0789900:CDS | 50.0% | |
| AGGTGAGTGTTTCACCTTGG+TGG | + | chr5_3:545171-545190 | Msa0789900:CDS | 50.0% | |
| GCACGGAAGCCCTATCTCAA+CGG | + | chr5_3:544418-544437 | Msa0789900:CDS | 55.0% | |
| GCATGGTGGCCGTTGAGATA+GGG | - | chr5_3:544430-544449 | None:intergenic | 55.0% | |
| CTATCTCAACGGCCACCATG+CGG | + | chr5_3:544429-544448 | Msa0789900:CDS | 55.0% | |
| TATCTCAACGGCCACCATGC+GGG | + | chr5_3:544430-544449 | Msa0789900:CDS | 55.0% | |
| AGTTGCAGTAACCCGCATGG+TGG | - | chr5_3:544444-544463 | None:intergenic | 55.0% | |
| CAGAGTTGCAGTAACCCGCA+TGG | - | chr5_3:544447-544466 | None:intergenic | 55.0% | |
| GGGAGGTGAGTGTTTCACCT+TGG | + | chr5_3:545168-545187 | Msa0789900:CDS | 55.0% | |
| GCACGGAAGCCCTATCTCAA+CGG | + | chr5_3:544418-544437 | Msa0789900:CDS | 55.0% | |
| GCATGGTGGCCGTTGAGATA+GGG | - | chr5_3:544430-544449 | None:intergenic | 55.0% | |
| CTATCTCAACGGCCACCATG+CGG | + | chr5_3:544429-544448 | Msa0789900:CDS | 55.0% | |
| TATCTCAACGGCCACCATGC+GGG | + | chr5_3:544430-544449 | Msa0789900:CDS | 55.0% | |
| AGTTGCAGTAACCCGCATGG+TGG | - | chr5_3:544444-544463 | None:intergenic | 55.0% | |
| CAGAGTTGCAGTAACCCGCA+TGG | - | chr5_3:544447-544466 | None:intergenic | 55.0% | |
| GGGAGGTGAGTGTTTCACCT+TGG | + | chr5_3:545168-545187 | Msa0789900:CDS | 55.0% | |
| CGCATGGTGGCCGTTGAGAT+AGG | - | chr5_3:544431-544450 | None:intergenic | 60.0% | |
| CGCATGGTGGCCGTTGAGAT+AGG | - | chr5_3:544431-544450 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 544358 | 545391 | 544358 | ID=Msa0789900;Name=Msa0789900 |
| chr5_3 | mRNA | 544358 | 545391 | 544358 | ID=Msa0789900-mRNA-1;Parent=Msa0789900;Name=Msa0789900-mRNA-1;_AED=0.30;_eAED=0.30;_QI=43|1|1|1|1|1|3|52|214 |
| chr5_3 | exon | 544358 | 544550 | 544358 | ID=Msa0789900-mRNA-1:exon:129;Parent=Msa0789900-mRNA-1 |
| chr5_3 | exon | 544666 | 544714 | 544666 | ID=Msa0789900-mRNA-1:exon:130;Parent=Msa0789900-mRNA-1 |
| chr5_3 | exon | 544894 | 545391 | 544894 | ID=Msa0789900-mRNA-1:exon:131;Parent=Msa0789900-mRNA-1 |
| chr5_3 | five_prime_UTR | 544358 | 544400 | 544358 | ID=Msa0789900-mRNA-1:five_prime_utr;Parent=Msa0789900-mRNA-1 |
| chr5_3 | CDS | 544401 | 544550 | 544401 | ID=Msa0789900-mRNA-1:cds;Parent=Msa0789900-mRNA-1 |
| chr5_3 | CDS | 544666 | 544714 | 544666 | ID=Msa0789900-mRNA-1:cds;Parent=Msa0789900-mRNA-1 |
| chr5_3 | CDS | 544894 | 545339 | 544894 | ID=Msa0789900-mRNA-1:cds;Parent=Msa0789900-mRNA-1 |
| chr5_3 | three_prime_UTR | 545340 | 545391 | 545340 | ID=Msa0789900-mRNA-1:three_prime_utr;Parent=Msa0789900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
