Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174960 | BAB70616.1 | 100.000 | 214 | 0 | 0 | 1 | 214 | 1 | 214 | 1.43e-156 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174960 | sp|P46423|GSTF_HYOMU | 63.592 | 206 | 75 | 0 | 4 | 209 | 3 | 208 | 2.87e-96 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174960 | Q948X4 | 100.000 | 214 | 0 | 0 | 1 | 214 | 1 | 214 | 6.83e-157 | 442 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037500 | Msa0174960 | 0.920589 | 1.057263e-87 | -8.615850e-47 |
| Msa0059880 | Msa0174960 | 0.800254 | 1.571324e-48 | -8.615850e-47 |
| Msa0129150 | Msa0174960 | 0.927156 | 1.739504e-91 | -8.615850e-47 |
| Msa0152740 | Msa0174960 | 0.828086 | 1.092894e-54 | -8.615850e-47 |
| Msa0174960 | Msa0336630 | 0.808537 | 2.950363e-50 | -8.615850e-47 |
| Msa0174960 | Msa0491760 | 0.802218 | 6.226069e-49 | -8.615850e-47 |
| Msa0174960 | Msa0789900 | 0.859762 | 3.305849e-63 | -8.615850e-47 |
| Msa0174960 | Msa0791300 | 0.800380 | 1.481034e-48 | -8.615850e-47 |
| Msa0174960 | Msa0814160 | 0.802509 | 5.424263e-49 | -8.615850e-47 |
| Msa0174960 | Msa0854840 | 0.817184 | 3.761830e-52 | -8.615850e-47 |
| Msa0174960 | Msa1216600 | 0.807986 | 3.866153e-50 | -8.615850e-47 |
| Msa0174960 | Msa1323030 | 0.810456 | 1.142505e-50 | -8.615850e-47 |
| Msa0174960 | Msa1407670 | 0.808413 | 3.135685e-50 | -8.615850e-47 |
| Msa0174960 | Msa1421120 | 0.802041 | 6.771910e-49 | -8.615850e-47 |
| Msa0174960 | Msa1449770 | 0.803135 | 4.027990e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174960 | MtrunA17_Chr1g0195821 | 94.860 | 214 | 11 | 0 | 1 | 214 | 1 | 214 | 3.90e-152 | 420 |
| Msa0174960 | MtrunA17_Chr1g0195811 | 89.720 | 214 | 22 | 0 | 1 | 214 | 1 | 214 | 1.37e-144 | 401 |
| Msa0174960 | MtrunA17_Chr3g0109891 | 43.478 | 207 | 116 | 1 | 3 | 208 | 2 | 208 | 3.95e-57 | 180 |
| Msa0174960 | MtrunA17_Chr1g0195831 | 39.904 | 208 | 124 | 1 | 4 | 210 | 3 | 210 | 8.62e-56 | 176 |
| Msa0174960 | MtrunA17_Chr3g0095781 | 41.429 | 210 | 121 | 2 | 3 | 211 | 2 | 210 | 2.82e-55 | 175 |
| Msa0174960 | MtrunA17_Chr1g0157211 | 41.364 | 220 | 122 | 4 | 1 | 213 | 1 | 220 | 8.77e-55 | 174 |
| Msa0174960 | MtrunA17_Chr5g0442751 | 41.429 | 210 | 118 | 4 | 3 | 209 | 2 | 209 | 1.19e-51 | 166 |
| Msa0174960 | MtrunA17_Chr5g0442741 | 38.863 | 211 | 126 | 3 | 3 | 211 | 2 | 211 | 1.46e-49 | 160 |
| Msa0174960 | MtrunA17_Chr3g0095821 | 44.512 | 164 | 90 | 1 | 49 | 211 | 1 | 164 | 3.26e-46 | 150 |
| Msa0174960 | MtrunA17_Chr1g0198101 | 88.235 | 68 | 8 | 0 | 147 | 214 | 1 | 68 | 1.95e-39 | 130 |
| Msa0174960 | MtrunA17_Chr8g0386711 | 27.397 | 146 | 106 | 0 | 4 | 149 | 3 | 148 | 4.60e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174960 | AT1G02920.1 | 60.287 | 209 | 83 | 0 | 1 | 209 | 1 | 209 | 1.48e-86 | 254 |
| Msa0174960 | AT1G02930.2 | 59.330 | 209 | 84 | 1 | 1 | 209 | 1 | 208 | 4.09e-86 | 253 |
| Msa0174960 | AT1G02930.1 | 59.330 | 209 | 84 | 1 | 1 | 209 | 1 | 208 | 4.09e-86 | 253 |
| Msa0174960 | AT2G02930.1 | 58.962 | 212 | 84 | 1 | 1 | 209 | 1 | 212 | 1.31e-85 | 252 |
| Msa0174960 | AT4G02520.1 | 57.820 | 211 | 86 | 1 | 1 | 208 | 1 | 211 | 4.85e-85 | 251 |
| Msa0174960 | AT2G47730.2 | 56.098 | 205 | 89 | 1 | 6 | 209 | 54 | 258 | 6.94e-84 | 250 |
| Msa0174960 | AT2G47730.1 | 56.098 | 205 | 89 | 1 | 6 | 209 | 54 | 258 | 6.94e-84 | 250 |
| Msa0174960 | AT1G02950.2 | 51.942 | 206 | 98 | 1 | 1 | 205 | 24 | 229 | 3.23e-77 | 232 |
| Msa0174960 | AT1G02950.3 | 52.475 | 202 | 95 | 1 | 5 | 205 | 26 | 227 | 8.17e-77 | 231 |
| Msa0174960 | AT1G02950.1 | 52.475 | 202 | 95 | 1 | 5 | 205 | 26 | 227 | 8.17e-77 | 231 |
| Msa0174960 | AT1G02950.5 | 52.475 | 202 | 95 | 1 | 5 | 205 | 38 | 239 | 1.03e-76 | 231 |
| Msa0174960 | AT1G02940.4 | 46.602 | 206 | 109 | 1 | 5 | 209 | 40 | 245 | 2.65e-67 | 207 |
| Msa0174960 | AT1G02940.1 | 46.602 | 206 | 109 | 1 | 5 | 209 | 40 | 245 | 2.65e-67 | 207 |
| Msa0174960 | AT1G02940.3 | 46.602 | 206 | 109 | 1 | 5 | 209 | 53 | 258 | 3.31e-67 | 207 |
| Msa0174960 | AT1G02940.2 | 46.602 | 206 | 109 | 1 | 5 | 209 | 65 | 270 | 4.66e-67 | 207 |
| Msa0174960 | AT3G62760.1 | 46.117 | 206 | 110 | 1 | 4 | 208 | 3 | 208 | 1.76e-61 | 191 |
| Msa0174960 | AT1G49860.1 | 47.692 | 195 | 98 | 2 | 21 | 211 | 22 | 216 | 3.54e-57 | 181 |
| Msa0174960 | AT3G03190.1 | 42.857 | 210 | 119 | 1 | 3 | 211 | 2 | 211 | 2.27e-54 | 173 |
| Msa0174960 | AT5G17220.1 | 38.095 | 210 | 129 | 1 | 3 | 211 | 2 | 211 | 1.60e-50 | 163 |
| Msa0174960 | AT2G30860.1 | 37.799 | 209 | 128 | 2 | 3 | 210 | 2 | 209 | 4.00e-47 | 154 |
| Msa0174960 | AT2G30870.1 | 37.438 | 203 | 126 | 1 | 9 | 210 | 7 | 209 | 1.19e-45 | 151 |
| Msa0174960 | AT1G02950.4 | 47.887 | 142 | 73 | 1 | 65 | 205 | 60 | 201 | 3.55e-44 | 147 |
| Msa0174960 | AT2G30860.2 | 35.948 | 153 | 97 | 1 | 3 | 155 | 2 | 153 | 2.35e-29 | 107 |
Find 52 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGGGATTAAGACTTTATT+TGG | 0.143067 | 1_4:-60728005 | Msa0174960:CDS |
| ACTCATTATTGCCATCTTCT+TGG | 0.252577 | 1_4:+60728088 | None:intergenic |
| GATGGAGATTTAAAGCTCTT+TGG | 0.296201 | 1_4:-60728366 | Msa0174960:intron |
| GACTTTATTTGGAATTCCTT+TGG | 0.310575 | 1_4:-60727994 | Msa0174960:CDS |
| CGCATGGTGGCCGTTGAGAT+AGG | 0.336998 | 1_4:+60728627 | None:intergenic |
| TCAATACTTGTTTGGGAACT+AGG | 0.337085 | 1_4:-60728023 | Msa0174960:CDS |
| AAGTAGCATCAATACTTGTT+TGG | 0.355376 | 1_4:-60728031 | Msa0174960:CDS |
| GAGGAATGGTGAACACAAAA+AGG | 0.363061 | 1_4:-60728547 | Msa0174960:CDS |
| AGTAGCATCAATACTTGTTT+GGG | 0.373002 | 1_4:-60728030 | Msa0174960:CDS |
| ATCTTTATGTTGCAGCCATT+TGG | 0.379956 | 1_4:-60728408 | Msa0174960:intron |
| GATCATGAGTATGCTGATAA+GGG | 0.387666 | 1_4:-60728134 | Msa0174960:CDS |
| TGATCATGAGTATGCTGATA+AGG | 0.403067 | 1_4:-60728135 | Msa0174960:CDS |
| CAAGACCTTATGTTAATGCT+TGG | 0.407435 | 1_4:-60727797 | Msa0174960:CDS |
| AAGACCTTATGTTAATGCTT+GGG | 0.420971 | 1_4:-60727796 | Msa0174960:CDS |
| AAATCTCCATCTTCAAAAGC+TGG | 0.446504 | 1_4:+60728378 | None:intergenic |
| ATGATCTTAATTAGGTATCA+TGG | 0.448138 | 1_4:+60727731 | None:intergenic |
| GCTTACATTGATTGATATGA+AGG | 0.465911 | 1_4:+60728521 | None:intergenic |
| ATGCTACTTTATCGTAGTGT+AGG | 0.467657 | 1_4:+60728045 | None:intergenic |
| CAATACTTGTTTGGGAACTA+GGG | 0.472992 | 1_4:-60728022 | Msa0174960:CDS |
| CAGATATGTATGTAGTACTA+TGG | 0.479242 | 1_4:+60728683 | None:intergenic |
| AAAGCTGGAACTTGACCAAA+TGG | 0.480424 | 1_4:+60728393 | None:intergenic |
| TCCTTTGGATTCAAAAGTTG+TGG | 0.481662 | 1_4:-60727979 | Msa0174960:CDS |
| AATGAGTGTGTGGTCGGAAG+TGG | 0.508607 | 1_4:-60728072 | Msa0174960:CDS |
| AGGTGAGTGTTTCACCTTGG+TGG | 0.510447 | 1_4:-60727883 | Msa0174960:CDS |
| GCATGGTGGCCGTTGAGATA+GGG | 0.515923 | 1_4:+60728628 | None:intergenic |
| TCAACCCAAGCATTAACATA+AGG | 0.524477 | 1_4:+60727792 | None:intergenic |
| ATTGTCTGAATCTAAATACA+TGG | 0.527540 | 1_4:-60727907 | Msa0174960:CDS |
| ATCAAGAATGCTATCCAACT+TGG | 0.528639 | 1_4:+60727944 | None:intergenic |
| TATCTCAACGGCCACCATGC+GGG | 0.531171 | 1_4:-60728625 | Msa0174960:CDS |
| GGAAGAGAATGAAGCCAAGT+TGG | 0.538389 | 1_4:-60727958 | Msa0174960:CDS |
| ACATACATATCTGCAAATCA+TGG | 0.544335 | 1_4:-60728673 | Msa0174960:exon |
| AAAATTGAAATGCAGAGTCA+AGG | 0.547213 | 1_4:-60728175 | Msa0174960:intron |
| AAATTGAAATGCAGAGTCAA+GGG | 0.557402 | 1_4:-60728174 | Msa0174960:intron |
| TTCATCAAGTAGTGAAGAGA+AGG | 0.557567 | 1_4:+60727846 | None:intergenic |
| GTAAGCATTAACATGAGGAA+TGG | 0.557734 | 1_4:-60728561 | Msa0174960:CDS |
| AAGCAGTGACTCCAAGAAGA+TGG | 0.558112 | 1_4:-60728099 | Msa0174960:CDS |
| GCAAGTACTTTAGACCAAGC+TGG | 0.578209 | 1_4:+60727753 | None:intergenic |
| CTTACATTGATTGATATGAA+GGG | 0.578372 | 1_4:+60728522 | None:intergenic |
| GGCAATAATGAGTGTGTGGT+CGG | 0.583453 | 1_4:-60728078 | Msa0174960:CDS |
| ATATCACTGCAAGACCAGCT+TGG | 0.601324 | 1_4:-60727767 | Msa0174960:CDS |
| ATCATGAGTATGCTGATAAG+GGG | 0.611479 | 1_4:-60728133 | Msa0174960:CDS |
| GCACGGAAGCCCTATCTCAA+CGG | 0.620985 | 1_4:-60728637 | Msa0174960:CDS |
| CTATCTCAACGGCCACCATG+CGG | 0.624610 | 1_4:-60728626 | Msa0174960:CDS |
| AGTTTGTAAGCATTAACATG+AGG | 0.629431 | 1_4:-60728566 | Msa0174960:CDS |
| GGGAGGTGAGTGTTTCACCT+TGG | 0.632509 | 1_4:-60727886 | Msa0174960:CDS |
| ATGGCAACAATAAAAGTGCA+CGG | 0.649349 | 1_4:-60728654 | Msa0174960:CDS |
| TTGTCTGAATCTAAATACAT+GGG | 0.650116 | 1_4:-60727906 | Msa0174960:CDS |
| CAGAGTTGCAGTAACCCGCA+TGG | 0.653094 | 1_4:+60728611 | None:intergenic |
| TCTGAATCTAAATACATGGG+AGG | 0.678031 | 1_4:-60727903 | Msa0174960:CDS |
| AGTTGCAGTAACCCGCATGG+TGG | 0.707787 | 1_4:+60728614 | None:intergenic |
| TAAATGATGCAAATCCACCA+AGG | 0.710594 | 1_4:+60727869 | None:intergenic |
| AGATGGCAATAATGAGTGTG+TGG | 0.714038 | 1_4:-60728082 | Msa0174960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAAAGATTGAATTAGT+TGG | + | chr1_4:60727940-60727959 | None:intergenic | 20.0% |
| !!! | TACCTAATTAAGATCATTTT+TGG | - | chr1_4:60728632-60728651 | Msa0174960:CDS | 20.0% |
| !!! | ACCTAATTAAGATCATTTTT+GGG | - | chr1_4:60728633-60728652 | Msa0174960:CDS | 20.0% |
| !! | AACATAAAGATTGAATTAGT+TGG | + | chr1_4:60727940-60727959 | None:intergenic | 20.0% |
| !!! | TACCTAATTAAGATCATTTT+TGG | - | chr1_4:60728632-60728651 | Msa0174960:CDS | 20.0% |
| !!! | ACCTAATTAAGATCATTTTT+GGG | - | chr1_4:60728633-60728652 | Msa0174960:CDS | 20.0% |
| !! | CTTACATTGATTGATATGAA+GGG | + | chr1_4:60727838-60727857 | None:intergenic | 25.0% |
| ! | ATTGTCTGAATCTAAATACA+TGG | - | chr1_4:60728450-60728469 | Msa0174960:intron | 25.0% |
| ! | TTGTCTGAATCTAAATACAT+GGG | - | chr1_4:60728451-60728470 | Msa0174960:intron | 25.0% |
| ! | ATGATCTTAATTAGGTATCA+TGG | + | chr1_4:60728629-60728648 | None:intergenic | 25.0% |
| ! | TCCCAAAAATGATCTTAATT+AGG | + | chr1_4:60728637-60728656 | None:intergenic | 25.0% |
| !!! | AAGATCATTTTTGGGATATT+TGG | - | chr1_4:60728641-60728660 | Msa0174960:CDS | 25.0% |
| !!! | AGATCATTTTTGGGATATTT+GGG | - | chr1_4:60728642-60728661 | Msa0174960:CDS | 25.0% |
| !! | CTTACATTGATTGATATGAA+GGG | + | chr1_4:60727838-60727857 | None:intergenic | 25.0% |
| ! | ATTGTCTGAATCTAAATACA+TGG | - | chr1_4:60728450-60728469 | Msa0174960:intron | 25.0% |
| ! | TTGTCTGAATCTAAATACAT+GGG | - | chr1_4:60728451-60728470 | Msa0174960:intron | 25.0% |
| ! | ATGATCTTAATTAGGTATCA+TGG | + | chr1_4:60728629-60728648 | None:intergenic | 25.0% |
| ! | TCCCAAAAATGATCTTAATT+AGG | + | chr1_4:60728637-60728656 | None:intergenic | 25.0% |
| !!! | AAGATCATTTTTGGGATATT+TGG | - | chr1_4:60728641-60728660 | Msa0174960:CDS | 25.0% |
| !!! | AGATCATTTTTGGGATATTT+GGG | - | chr1_4:60728642-60728661 | Msa0174960:CDS | 25.0% |
| CAGATATGTATGTAGTACTA+TGG | + | chr1_4:60727677-60727696 | None:intergenic | 30.0% | |
| ACATACATATCTGCAAATCA+TGG | - | chr1_4:60727684-60727703 | Msa0174960:three_prime_UTR | 30.0% | |
| AGTTTGTAAGCATTAACATG+AGG | - | chr1_4:60727791-60727810 | Msa0174960:CDS | 30.0% | |
| ! | GCTTACATTGATTGATATGA+AGG | + | chr1_4:60727839-60727858 | None:intergenic | 30.0% |
| ATTAGTTGGATCAATGTAGT+TGG | + | chr1_4:60727926-60727945 | None:intergenic | 30.0% | |
| AAAATTGAAATGCAGAGTCA+AGG | - | chr1_4:60728182-60728201 | Msa0174960:intron | 30.0% | |
| AAATTGAAATGCAGAGTCAA+GGG | - | chr1_4:60728183-60728202 | Msa0174960:intron | 30.0% | |
| AAGTAGCATCAATACTTGTT+TGG | - | chr1_4:60728326-60728345 | Msa0174960:intron | 30.0% | |
| AGTAGCATCAATACTTGTTT+GGG | - | chr1_4:60728327-60728346 | Msa0174960:intron | 30.0% | |
| CTAGGGATTAAGACTTTATT+TGG | - | chr1_4:60728352-60728371 | Msa0174960:intron | 30.0% | |
| ! | GACTTTATTTGGAATTCCTT+TGG | - | chr1_4:60728363-60728382 | Msa0174960:intron | 30.0% |
| AAGACCTTATGTTAATGCTT+GGG | - | chr1_4:60728561-60728580 | Msa0174960:CDS | 30.0% | |
| !!! | GATATTTGGGTGTTGTTTTA+TGG | - | chr1_4:60728655-60728674 | Msa0174960:CDS | 30.0% |
| CAGATATGTATGTAGTACTA+TGG | + | chr1_4:60727677-60727696 | None:intergenic | 30.0% | |
| ACATACATATCTGCAAATCA+TGG | - | chr1_4:60727684-60727703 | Msa0174960:three_prime_UTR | 30.0% | |
| AGTTTGTAAGCATTAACATG+AGG | - | chr1_4:60727791-60727810 | Msa0174960:CDS | 30.0% | |
| ! | GCTTACATTGATTGATATGA+AGG | + | chr1_4:60727839-60727858 | None:intergenic | 30.0% |
| ATTAGTTGGATCAATGTAGT+TGG | + | chr1_4:60727926-60727945 | None:intergenic | 30.0% | |
| AAAATTGAAATGCAGAGTCA+AGG | - | chr1_4:60728182-60728201 | Msa0174960:intron | 30.0% | |
| AAATTGAAATGCAGAGTCAA+GGG | - | chr1_4:60728183-60728202 | Msa0174960:intron | 30.0% | |
| AAGTAGCATCAATACTTGTT+TGG | - | chr1_4:60728326-60728345 | Msa0174960:intron | 30.0% | |
| AGTAGCATCAATACTTGTTT+GGG | - | chr1_4:60728327-60728346 | Msa0174960:intron | 30.0% | |
| CTAGGGATTAAGACTTTATT+TGG | - | chr1_4:60728352-60728371 | Msa0174960:intron | 30.0% | |
| ! | GACTTTATTTGGAATTCCTT+TGG | - | chr1_4:60728363-60728382 | Msa0174960:intron | 30.0% |
| AAGACCTTATGTTAATGCTT+GGG | - | chr1_4:60728561-60728580 | Msa0174960:CDS | 30.0% | |
| !!! | GATATTTGGGTGTTGTTTTA+TGG | - | chr1_4:60728655-60728674 | Msa0174960:CDS | 30.0% |
| ! | ATGGCAACAATAAAAGTGCA+CGG | - | chr1_4:60727703-60727722 | Msa0174960:three_prime_UTR | 35.0% |
| GTAAGCATTAACATGAGGAA+TGG | - | chr1_4:60727796-60727815 | Msa0174960:CDS | 35.0% | |
| TCAATGTAGTTGGAACAAGA+AGG | + | chr1_4:60727916-60727935 | None:intergenic | 35.0% | |
| ATCTTTATGTTGCAGCCATT+TGG | - | chr1_4:60727949-60727968 | Msa0174960:CDS | 35.0% | |
| AAATCTCCATCTTCAAAAGC+TGG | + | chr1_4:60727982-60728001 | None:intergenic | 35.0% | |
| ! | GATGGAGATTTAAAGCTCTT+TGG | - | chr1_4:60727991-60728010 | Msa0174960:CDS | 35.0% |
| TATGTAGCACATGACACTTT+AGG | - | chr1_4:60728036-60728055 | Msa0174960:CDS | 35.0% | |
| TGATCATGAGTATGCTGATA+AGG | - | chr1_4:60728222-60728241 | Msa0174960:intron | 35.0% | |
| GATCATGAGTATGCTGATAA+GGG | - | chr1_4:60728223-60728242 | Msa0174960:intron | 35.0% | |
| ATCATGAGTATGCTGATAAG+GGG | - | chr1_4:60728224-60728243 | Msa0174960:intron | 35.0% | |
| ACTCATTATTGCCATCTTCT+TGG | + | chr1_4:60728272-60728291 | None:intergenic | 35.0% | |
| !! | ATGCTACTTTATCGTAGTGT+AGG | + | chr1_4:60728315-60728334 | None:intergenic | 35.0% |
| TCAATACTTGTTTGGGAACT+AGG | - | chr1_4:60728334-60728353 | Msa0174960:intron | 35.0% | |
| CAATACTTGTTTGGGAACTA+GGG | - | chr1_4:60728335-60728354 | Msa0174960:intron | 35.0% | |
| TCCTTTGGATTCAAAAGTTG+TGG | - | chr1_4:60728378-60728397 | Msa0174960:CDS | 35.0% | |
| ! | TCCACAACTTTTGAATCCAA+AGG | + | chr1_4:60728382-60728401 | None:intergenic | 35.0% |
| ATCAAGAATGCTATCCAACT+TGG | + | chr1_4:60728416-60728435 | None:intergenic | 35.0% | |
| TCTGAATCTAAATACATGGG+AGG | - | chr1_4:60728454-60728473 | Msa0174960:intron | 35.0% | |
| TAAATGATGCAAATCCACCA+AGG | + | chr1_4:60728491-60728510 | None:intergenic | 35.0% | |
| TTCATCAAGTAGTGAAGAGA+AGG | + | chr1_4:60728514-60728533 | None:intergenic | 35.0% | |
| CAAGACCTTATGTTAATGCT+TGG | - | chr1_4:60728560-60728579 | Msa0174960:CDS | 35.0% | |
| TCAACCCAAGCATTAACATA+AGG | + | chr1_4:60728568-60728587 | None:intergenic | 35.0% | |
| ! | ATGGCAACAATAAAAGTGCA+CGG | - | chr1_4:60727703-60727722 | Msa0174960:three_prime_UTR | 35.0% |
| GTAAGCATTAACATGAGGAA+TGG | - | chr1_4:60727796-60727815 | Msa0174960:CDS | 35.0% | |
| TCAATGTAGTTGGAACAAGA+AGG | + | chr1_4:60727916-60727935 | None:intergenic | 35.0% | |
| ATCTTTATGTTGCAGCCATT+TGG | - | chr1_4:60727949-60727968 | Msa0174960:CDS | 35.0% | |
| AAATCTCCATCTTCAAAAGC+TGG | + | chr1_4:60727982-60728001 | None:intergenic | 35.0% | |
| ! | GATGGAGATTTAAAGCTCTT+TGG | - | chr1_4:60727991-60728010 | Msa0174960:CDS | 35.0% |
| TATGTAGCACATGACACTTT+AGG | - | chr1_4:60728036-60728055 | Msa0174960:CDS | 35.0% | |
| TGATCATGAGTATGCTGATA+AGG | - | chr1_4:60728222-60728241 | Msa0174960:intron | 35.0% | |
| GATCATGAGTATGCTGATAA+GGG | - | chr1_4:60728223-60728242 | Msa0174960:intron | 35.0% | |
| ATCATGAGTATGCTGATAAG+GGG | - | chr1_4:60728224-60728243 | Msa0174960:intron | 35.0% | |
| ACTCATTATTGCCATCTTCT+TGG | + | chr1_4:60728272-60728291 | None:intergenic | 35.0% | |
| !! | ATGCTACTTTATCGTAGTGT+AGG | + | chr1_4:60728315-60728334 | None:intergenic | 35.0% |
| TCAATACTTGTTTGGGAACT+AGG | - | chr1_4:60728334-60728353 | Msa0174960:intron | 35.0% | |
| CAATACTTGTTTGGGAACTA+GGG | - | chr1_4:60728335-60728354 | Msa0174960:intron | 35.0% | |
| TCCTTTGGATTCAAAAGTTG+TGG | - | chr1_4:60728378-60728397 | Msa0174960:CDS | 35.0% | |
| ! | TCCACAACTTTTGAATCCAA+AGG | + | chr1_4:60728382-60728401 | None:intergenic | 35.0% |
| ATCAAGAATGCTATCCAACT+TGG | + | chr1_4:60728416-60728435 | None:intergenic | 35.0% | |
| TCTGAATCTAAATACATGGG+AGG | - | chr1_4:60728454-60728473 | Msa0174960:intron | 35.0% | |
| TAAATGATGCAAATCCACCA+AGG | + | chr1_4:60728491-60728510 | None:intergenic | 35.0% | |
| TTCATCAAGTAGTGAAGAGA+AGG | + | chr1_4:60728514-60728533 | None:intergenic | 35.0% | |
| CAAGACCTTATGTTAATGCT+TGG | - | chr1_4:60728560-60728579 | Msa0174960:CDS | 35.0% | |
| TCAACCCAAGCATTAACATA+AGG | + | chr1_4:60728568-60728587 | None:intergenic | 35.0% | |
| GAGGAATGGTGAACACAAAA+AGG | - | chr1_4:60727810-60727829 | Msa0174960:CDS | 40.0% | |
| AAAGCTGGAACTTGACCAAA+TGG | + | chr1_4:60727967-60727986 | None:intergenic | 40.0% | |
| !! | CAAGTTCCAGCTTTTGAAGA+TGG | - | chr1_4:60727973-60727992 | Msa0174960:CDS | 40.0% |
| AGATGGCAATAATGAGTGTG+TGG | - | chr1_4:60728275-60728294 | Msa0174960:intron | 40.0% | |
| GAGGAATGGTGAACACAAAA+AGG | - | chr1_4:60727810-60727829 | Msa0174960:CDS | 40.0% | |
| AAAGCTGGAACTTGACCAAA+TGG | + | chr1_4:60727967-60727986 | None:intergenic | 40.0% | |
| !! | CAAGTTCCAGCTTTTGAAGA+TGG | - | chr1_4:60727973-60727992 | Msa0174960:CDS | 40.0% |
| AGATGGCAATAATGAGTGTG+TGG | - | chr1_4:60728275-60728294 | Msa0174960:intron | 40.0% | |
| GACACGATATCAAACACACG+TGG | - | chr1_4:60728080-60728099 | Msa0174960:CDS | 45.0% | |
| AAGCAGTGACTCCAAGAAGA+TGG | - | chr1_4:60728258-60728277 | Msa0174960:intron | 45.0% | |
| GGCAATAATGAGTGTGTGGT+CGG | - | chr1_4:60728279-60728298 | Msa0174960:intron | 45.0% | |
| GGAAGAGAATGAAGCCAAGT+TGG | - | chr1_4:60728399-60728418 | Msa0174960:intron | 45.0% | |
| ATATCACTGCAAGACCAGCT+TGG | - | chr1_4:60728590-60728609 | Msa0174960:CDS | 45.0% | |
| GCAAGTACTTTAGACCAAGC+TGG | + | chr1_4:60728607-60728626 | None:intergenic | 45.0% | |
| GACACGATATCAAACACACG+TGG | - | chr1_4:60728080-60728099 | Msa0174960:CDS | 45.0% | |
| AAGCAGTGACTCCAAGAAGA+TGG | - | chr1_4:60728258-60728277 | Msa0174960:intron | 45.0% | |
| GGCAATAATGAGTGTGTGGT+CGG | - | chr1_4:60728279-60728298 | Msa0174960:intron | 45.0% | |
| GGAAGAGAATGAAGCCAAGT+TGG | - | chr1_4:60728399-60728418 | Msa0174960:intron | 45.0% | |
| ATATCACTGCAAGACCAGCT+TGG | - | chr1_4:60728590-60728609 | Msa0174960:CDS | 45.0% | |
| GCAAGTACTTTAGACCAAGC+TGG | + | chr1_4:60728607-60728626 | None:intergenic | 45.0% | |
| AATGAGTGTGTGGTCGGAAG+TGG | - | chr1_4:60728285-60728304 | Msa0174960:intron | 50.0% | |
| AGGTGAGTGTTTCACCTTGG+TGG | - | chr1_4:60728474-60728493 | Msa0174960:intron | 50.0% | |
| AATGAGTGTGTGGTCGGAAG+TGG | - | chr1_4:60728285-60728304 | Msa0174960:intron | 50.0% | |
| AGGTGAGTGTTTCACCTTGG+TGG | - | chr1_4:60728474-60728493 | Msa0174960:intron | 50.0% | |
| GCACGGAAGCCCTATCTCAA+CGG | - | chr1_4:60727720-60727739 | Msa0174960:exon | 55.0% | |
| GCATGGTGGCCGTTGAGATA+GGG | + | chr1_4:60727732-60727751 | None:intergenic | 55.0% | |
| CTATCTCAACGGCCACCATG+CGG | - | chr1_4:60727731-60727750 | Msa0174960:exon | 55.0% | |
| TATCTCAACGGCCACCATGC+GGG | - | chr1_4:60727732-60727751 | Msa0174960:exon | 55.0% | |
| AGTTGCAGTAACCCGCATGG+TGG | + | chr1_4:60727746-60727765 | None:intergenic | 55.0% | |
| CAGAGTTGCAGTAACCCGCA+TGG | + | chr1_4:60727749-60727768 | None:intergenic | 55.0% | |
| GGGAGGTGAGTGTTTCACCT+TGG | - | chr1_4:60728471-60728490 | Msa0174960:intron | 55.0% | |
| GCACGGAAGCCCTATCTCAA+CGG | - | chr1_4:60727720-60727739 | Msa0174960:exon | 55.0% | |
| GCATGGTGGCCGTTGAGATA+GGG | + | chr1_4:60727732-60727751 | None:intergenic | 55.0% | |
| CTATCTCAACGGCCACCATG+CGG | - | chr1_4:60727731-60727750 | Msa0174960:exon | 55.0% | |
| TATCTCAACGGCCACCATGC+GGG | - | chr1_4:60727732-60727751 | Msa0174960:exon | 55.0% | |
| AGTTGCAGTAACCCGCATGG+TGG | + | chr1_4:60727746-60727765 | None:intergenic | 55.0% | |
| CAGAGTTGCAGTAACCCGCA+TGG | + | chr1_4:60727749-60727768 | None:intergenic | 55.0% | |
| GGGAGGTGAGTGTTTCACCT+TGG | - | chr1_4:60728471-60728490 | Msa0174960:intron | 55.0% | |
| CGCATGGTGGCCGTTGAGAT+AGG | + | chr1_4:60727733-60727752 | None:intergenic | 60.0% | |
| CGCATGGTGGCCGTTGAGAT+AGG | + | chr1_4:60727733-60727752 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 60727660 | 60728719 | 60727660 | ID=Msa0174960;Name=Msa0174960 |
| chr1_4 | mRNA | 60727660 | 60728719 | 60727660 | ID=Msa0174960-mRNA-1;Parent=Msa0174960;Name=Msa0174960-mRNA-1;_AED=0.30;_eAED=0.30;_QI=43|1|1|1|1|1|3|77|214 |
| chr1_4 | exon | 60727660 | 60728182 | 60727660 | ID=Msa0174960-mRNA-1:exon:19291;Parent=Msa0174960-mRNA-1 |
| chr1_4 | exon | 60728367 | 60728415 | 60728367 | ID=Msa0174960-mRNA-1:exon:19290;Parent=Msa0174960-mRNA-1 |
| chr1_4 | exon | 60728527 | 60728719 | 60728527 | ID=Msa0174960-mRNA-1:exon:19289;Parent=Msa0174960-mRNA-1 |
| chr1_4 | five_prime_UTR | 60728677 | 60728719 | 60728677 | ID=Msa0174960-mRNA-1:five_prime_utr;Parent=Msa0174960-mRNA-1 |
| chr1_4 | CDS | 60728527 | 60728676 | 60728527 | ID=Msa0174960-mRNA-1:cds;Parent=Msa0174960-mRNA-1 |
| chr1_4 | CDS | 60728367 | 60728415 | 60728367 | ID=Msa0174960-mRNA-1:cds;Parent=Msa0174960-mRNA-1 |
| chr1_4 | CDS | 60727737 | 60728182 | 60727737 | ID=Msa0174960-mRNA-1:cds;Parent=Msa0174960-mRNA-1 |
| chr1_4 | three_prime_UTR | 60727660 | 60727736 | 60727660 | ID=Msa0174960-mRNA-1:three_prime_utr;Parent=Msa0174960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
