Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129150 | BAB70616.1 | 99.533 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 4.83e-156 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129150 | sp|P46423|GSTF_HYOMU | 63.107 | 206 | 76 | 0 | 4 | 209 | 3 | 208 | 1.09e-95 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129150 | Q948X4 | 99.533 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 2.31e-156 | 441 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037500 | Msa0129150 | 0.907652 | 4.019049e-81 | -8.615850e-47 |
| Msa0108350 | Msa0129150 | 0.802136 | 6.474461e-49 | -8.615850e-47 |
| Msa0129150 | Msa0152740 | 0.802448 | 5.584785e-49 | -8.615850e-47 |
| Msa0129150 | Msa0174960 | 0.927156 | 1.739504e-91 | -8.615850e-47 |
| Msa0129150 | Msa0777250 | 0.804895 | 1.734416e-49 | -8.615850e-47 |
| Msa0129150 | Msa0789900 | 0.832215 | 1.073258e-55 | -8.615850e-47 |
| Msa0129150 | Msa0854840 | 0.806772 | 6.994362e-50 | -8.615850e-47 |
| Msa0129150 | Msa1216600 | 0.800207 | 1.605718e-48 | -8.615850e-47 |
| Msa0129150 | Msa1407670 | 0.800636 | 1.313615e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129150 | MtrunA17_Chr1g0195821 | 94.393 | 214 | 12 | 0 | 1 | 214 | 1 | 214 | 1.57e-151 | 419 |
| Msa0129150 | MtrunA17_Chr1g0195811 | 89.252 | 214 | 23 | 0 | 1 | 214 | 1 | 214 | 4.03e-144 | 400 |
| Msa0129150 | MtrunA17_Chr3g0109891 | 42.995 | 207 | 117 | 1 | 3 | 208 | 2 | 208 | 1.35e-56 | 178 |
| Msa0129150 | MtrunA17_Chr1g0195831 | 39.423 | 208 | 125 | 1 | 4 | 210 | 3 | 210 | 2.42e-55 | 175 |
| Msa0129150 | MtrunA17_Chr3g0095781 | 41.429 | 210 | 121 | 2 | 3 | 211 | 2 | 210 | 3.82e-55 | 175 |
| Msa0129150 | MtrunA17_Chr1g0157211 | 40.909 | 220 | 123 | 4 | 1 | 213 | 1 | 220 | 2.57e-54 | 173 |
| Msa0129150 | MtrunA17_Chr5g0442751 | 41.429 | 210 | 118 | 4 | 3 | 209 | 2 | 209 | 1.67e-51 | 166 |
| Msa0129150 | MtrunA17_Chr5g0442741 | 38.863 | 211 | 126 | 3 | 3 | 211 | 2 | 211 | 2.02e-49 | 160 |
| Msa0129150 | MtrunA17_Chr3g0095821 | 44.512 | 164 | 90 | 1 | 49 | 211 | 1 | 164 | 5.85e-46 | 150 |
| Msa0129150 | MtrunA17_Chr1g0198101 | 89.706 | 68 | 7 | 0 | 147 | 214 | 1 | 68 | 3.62e-40 | 132 |
| Msa0129150 | MtrunA17_Chr8g0386711 | 27.397 | 146 | 106 | 0 | 4 | 149 | 3 | 148 | 5.49e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129150 | AT1G02920.1 | 59.809 | 209 | 84 | 0 | 1 | 209 | 1 | 209 | 3.92e-86 | 253 |
| Msa0129150 | AT1G02930.2 | 58.852 | 209 | 85 | 1 | 1 | 209 | 1 | 208 | 1.05e-85 | 253 |
| Msa0129150 | AT1G02930.1 | 58.852 | 209 | 85 | 1 | 1 | 209 | 1 | 208 | 1.05e-85 | 253 |
| Msa0129150 | AT2G02930.1 | 58.491 | 212 | 85 | 1 | 1 | 209 | 1 | 212 | 4.40e-85 | 251 |
| Msa0129150 | AT4G02520.1 | 57.346 | 211 | 87 | 1 | 1 | 208 | 1 | 211 | 1.67e-84 | 249 |
| Msa0129150 | AT2G47730.2 | 55.610 | 205 | 90 | 1 | 6 | 209 | 54 | 258 | 2.00e-83 | 249 |
| Msa0129150 | AT2G47730.1 | 55.610 | 205 | 90 | 1 | 6 | 209 | 54 | 258 | 2.00e-83 | 249 |
| Msa0129150 | AT1G02950.2 | 51.942 | 206 | 98 | 1 | 1 | 205 | 24 | 229 | 4.78e-77 | 232 |
| Msa0129150 | AT1G02950.3 | 52.475 | 202 | 95 | 1 | 5 | 205 | 26 | 227 | 1.32e-76 | 231 |
| Msa0129150 | AT1G02950.1 | 52.475 | 202 | 95 | 1 | 5 | 205 | 26 | 227 | 1.32e-76 | 231 |
| Msa0129150 | AT1G02950.5 | 52.475 | 202 | 95 | 1 | 5 | 205 | 38 | 239 | 1.68e-76 | 231 |
| Msa0129150 | AT1G02940.4 | 46.602 | 206 | 109 | 1 | 5 | 209 | 40 | 245 | 4.32e-67 | 207 |
| Msa0129150 | AT1G02940.1 | 46.602 | 206 | 109 | 1 | 5 | 209 | 40 | 245 | 4.32e-67 | 207 |
| Msa0129150 | AT1G02940.3 | 46.602 | 206 | 109 | 1 | 5 | 209 | 53 | 258 | 6.50e-67 | 207 |
| Msa0129150 | AT1G02940.2 | 46.602 | 206 | 109 | 1 | 5 | 209 | 65 | 270 | 8.57e-67 | 207 |
| Msa0129150 | AT3G62760.1 | 45.631 | 206 | 111 | 1 | 4 | 208 | 3 | 208 | 5.59e-61 | 190 |
| Msa0129150 | AT1G49860.1 | 47.692 | 195 | 98 | 2 | 21 | 211 | 22 | 216 | 6.94e-57 | 181 |
| Msa0129150 | AT3G03190.1 | 42.381 | 210 | 120 | 1 | 3 | 211 | 2 | 211 | 7.25e-54 | 172 |
| Msa0129150 | AT5G17220.1 | 38.095 | 210 | 129 | 1 | 3 | 211 | 2 | 211 | 2.44e-50 | 163 |
| Msa0129150 | AT2G30860.1 | 37.321 | 209 | 129 | 2 | 3 | 210 | 2 | 209 | 1.22e-46 | 153 |
| Msa0129150 | AT2G30870.1 | 36.946 | 203 | 127 | 1 | 9 | 210 | 7 | 209 | 3.24e-45 | 150 |
| Msa0129150 | AT1G02950.4 | 47.887 | 142 | 73 | 1 | 65 | 205 | 60 | 201 | 7.41e-44 | 146 |
| Msa0129150 | AT2G30860.2 | 35.294 | 153 | 98 | 1 | 3 | 155 | 2 | 153 | 7.42e-29 | 106 |
Find 52 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGGGATTAAGACTTTATT+TGG | 0.143067 | 1_3:-58958731 | Msa0129150:CDS |
| ACTCATTATTGCCATCTTCT+TGG | 0.252577 | 1_3:+58958814 | None:intergenic |
| GATGGAGATTTAAAGCTCTT+TGG | 0.296201 | 1_3:-58959087 | Msa0129150:intron |
| GACTTTATTTGGAATTCCTT+TGG | 0.310575 | 1_3:-58958720 | Msa0129150:CDS |
| CGCATGGTGGCCGTTGAGAT+AGG | 0.336998 | 1_3:+58959352 | None:intergenic |
| TCAATACTTGTTTGGGAACT+AGG | 0.337085 | 1_3:-58958749 | Msa0129150:CDS |
| AAGTAGCATCAATACTTGTT+TGG | 0.355376 | 1_3:-58958757 | Msa0129150:CDS |
| GAGGAATGGTGAACACAAAA+AGG | 0.363061 | 1_3:-58959272 | Msa0129150:CDS |
| AGTAGCATCAATACTTGTTT+GGG | 0.373002 | 1_3:-58958756 | Msa0129150:CDS |
| TTCTTTATGTTGCAGCCATT+TGG | 0.379956 | 1_3:-58959129 | Msa0129150:intron |
| GATCATGAGTATGCTGATAA+GGG | 0.387666 | 1_3:-58958860 | Msa0129150:CDS |
| TGATCATGAGTATGCTGATA+AGG | 0.403067 | 1_3:-58958861 | Msa0129150:CDS |
| CAAGACCTTATGTTAATGCT+TGG | 0.407435 | 1_3:-58958523 | Msa0129150:CDS |
| AAGACCTTATGTTAATGCTT+GGG | 0.420971 | 1_3:-58958522 | Msa0129150:CDS |
| AAATCTCCATCTTCAAAAGC+TGG | 0.446504 | 1_3:+58959099 | None:intergenic |
| ATGATCTTAATTAGGTATCA+TGG | 0.448138 | 1_3:+58958457 | None:intergenic |
| GCTTACATTGATTGATATGA+AGG | 0.465911 | 1_3:+58959246 | None:intergenic |
| ATGCTACTTTATCGTAGTGT+AGG | 0.467657 | 1_3:+58958771 | None:intergenic |
| CAATACTTGTTTGGGAACTA+GGG | 0.472992 | 1_3:-58958748 | Msa0129150:CDS |
| CAGATATGTATGTAGTACTA+TGG | 0.479242 | 1_3:+58959408 | None:intergenic |
| AAAGCTGGAACTTGACCAAA+TGG | 0.480424 | 1_3:+58959114 | None:intergenic |
| TCCTTTGGATTCAAAAGTTG+TGG | 0.481662 | 1_3:-58958705 | Msa0129150:CDS |
| ATCAAGAATGCTATCCAACT+TGG | 0.507885 | 1_3:+58958670 | None:intergenic |
| AATGAGTGTGTGGTCGGAAG+TGG | 0.508607 | 1_3:-58958798 | Msa0129150:CDS |
| AGGTGAGTGTTTCACCTTGG+TGG | 0.510447 | 1_3:-58958609 | Msa0129150:CDS |
| GCATGGTGGCCGTTGAGATA+GGG | 0.515923 | 1_3:+58959353 | None:intergenic |
| TCAACCCAAGCATTAACATA+AGG | 0.524477 | 1_3:+58958518 | None:intergenic |
| ATTGTCTGAATCTAAATACA+TGG | 0.527540 | 1_3:-58958633 | Msa0129150:CDS |
| TATCTCAACGGCCACCATGC+GGG | 0.531171 | 1_3:-58959350 | Msa0129150:CDS |
| GGAAGAGAATGAAGCCAAGT+TGG | 0.538389 | 1_3:-58958684 | Msa0129150:CDS |
| ACATACATATCTGCAAATCA+TGG | 0.544335 | 1_3:-58959398 | Msa0129150:exon |
| AAAATTGAAATGCAGAGTCA+AGG | 0.547213 | 1_3:-58958901 | Msa0129150:intron |
| AAATTGAAATGCAGAGTCAA+GGG | 0.557402 | 1_3:-58958900 | Msa0129150:intron |
| TTCATCAAGTAGTGAAGAGA+AGG | 0.557567 | 1_3:+58958572 | None:intergenic |
| GTAAGCATTAACATGAGGAA+TGG | 0.557734 | 1_3:-58959286 | Msa0129150:CDS |
| AAGCAGTGACTCCAAGAAGA+TGG | 0.558112 | 1_3:-58958825 | Msa0129150:CDS |
| GCAAGTACTTTAGACCAAGC+TGG | 0.578209 | 1_3:+58958479 | None:intergenic |
| CTTACATTGATTGATATGAA+GGG | 0.578372 | 1_3:+58959247 | None:intergenic |
| GGCAATAATGAGTGTGTGGT+CGG | 0.583453 | 1_3:-58958804 | Msa0129150:CDS |
| ATATCACTGCAAGACCAGCT+TGG | 0.601324 | 1_3:-58958493 | Msa0129150:CDS |
| ATCATGAGTATGCTGATAAG+GGG | 0.611479 | 1_3:-58958859 | Msa0129150:CDS |
| GCACGGAAGCCCTATCTCAA+CGG | 0.620985 | 1_3:-58959362 | Msa0129150:CDS |
| CTATCTCAACGGCCACCATG+CGG | 0.624610 | 1_3:-58959351 | Msa0129150:CDS |
| AGTTTGTAAGCATTAACATG+AGG | 0.629431 | 1_3:-58959291 | Msa0129150:CDS |
| GGGAGGTGAGTGTTTCACCT+TGG | 0.632509 | 1_3:-58958612 | Msa0129150:CDS |
| ATGGCAACAATAAAAGTGCA+CGG | 0.649349 | 1_3:-58959379 | Msa0129150:CDS |
| TTGTCTGAATCTAAATACAT+GGG | 0.650116 | 1_3:-58958632 | Msa0129150:CDS |
| CAGAGTTGCAGTAACCCGCA+TGG | 0.653094 | 1_3:+58959336 | None:intergenic |
| TCTGAATCTAAATACATGGG+AGG | 0.678031 | 1_3:-58958629 | Msa0129150:CDS |
| AGTTGCAGTAACCCGCATGG+TGG | 0.707787 | 1_3:+58959339 | None:intergenic |
| TAAATGATGCAAATCCACCA+AGG | 0.710594 | 1_3:+58958595 | None:intergenic |
| AGATGGCAATAATGAGTGTG+TGG | 0.714038 | 1_3:-58958808 | Msa0129150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACCTAATTAAGATCATTTT+TGG | - | chr1_3:58959382-58959401 | Msa0129150:CDS | 20.0% |
| !!! | ACCTAATTAAGATCATTTTT+GGG | - | chr1_3:58959383-58959402 | Msa0129150:exon | 20.0% |
| !!! | TACCTAATTAAGATCATTTT+TGG | - | chr1_3:58959382-58959401 | Msa0129150:CDS | 20.0% |
| !!! | ACCTAATTAAGATCATTTTT+GGG | - | chr1_3:58959383-58959402 | Msa0129150:exon | 20.0% |
| !! | CTTACATTGATTGATATGAA+GGG | + | chr1_3:58958589-58958608 | None:intergenic | 25.0% |
| !! | ATCAATTAGTTTGATCAATG+TGG | + | chr1_3:58958681-58958700 | None:intergenic | 25.0% |
| ! | ATTGTCTGAATCTAAATACA+TGG | - | chr1_3:58959200-58959219 | Msa0129150:intron | 25.0% |
| ! | TTGTCTGAATCTAAATACAT+GGG | - | chr1_3:58959201-58959220 | Msa0129150:intron | 25.0% |
| ! | ATGATCTTAATTAGGTATCA+TGG | + | chr1_3:58959379-58959398 | None:intergenic | 25.0% |
| ! | TCCCAAAAATGATCTTAATT+AGG | + | chr1_3:58959387-58959406 | None:intergenic | 25.0% |
| !!! | AAGATCATTTTTGGGATATT+TGG | - | chr1_3:58959391-58959410 | Msa0129150:exon | 25.0% |
| !!! | AGATCATTTTTGGGATATTT+GGG | - | chr1_3:58959392-58959411 | Msa0129150:exon | 25.0% |
| !! | CTTACATTGATTGATATGAA+GGG | + | chr1_3:58958589-58958608 | None:intergenic | 25.0% |
| !! | ATCAATTAGTTTGATCAATG+TGG | + | chr1_3:58958681-58958700 | None:intergenic | 25.0% |
| ! | ATTGTCTGAATCTAAATACA+TGG | - | chr1_3:58959200-58959219 | Msa0129150:intron | 25.0% |
| ! | TTGTCTGAATCTAAATACAT+GGG | - | chr1_3:58959201-58959220 | Msa0129150:intron | 25.0% |
| ! | ATGATCTTAATTAGGTATCA+TGG | + | chr1_3:58959379-58959398 | None:intergenic | 25.0% |
| ! | TCCCAAAAATGATCTTAATT+AGG | + | chr1_3:58959387-58959406 | None:intergenic | 25.0% |
| !!! | AAGATCATTTTTGGGATATT+TGG | - | chr1_3:58959391-58959410 | Msa0129150:exon | 25.0% |
| !!! | AGATCATTTTTGGGATATTT+GGG | - | chr1_3:58959392-58959411 | Msa0129150:exon | 25.0% |
| CAGATATGTATGTAGTACTA+TGG | + | chr1_3:58958428-58958447 | None:intergenic | 30.0% | |
| ACATACATATCTGCAAATCA+TGG | - | chr1_3:58958435-58958454 | Msa0129150:three_prime_UTR | 30.0% | |
| AGTTTGTAAGCATTAACATG+AGG | - | chr1_3:58958542-58958561 | Msa0129150:CDS | 30.0% | |
| ! | GCTTACATTGATTGATATGA+AGG | + | chr1_3:58958590-58958609 | None:intergenic | 30.0% |
| ! | ATTAGTTTGATCAATGTGGT+TGG | + | chr1_3:58958677-58958696 | None:intergenic | 30.0% |
| AAAATTGAAATGCAGAGTCA+AGG | - | chr1_3:58958932-58958951 | Msa0129150:intron | 30.0% | |
| AAATTGAAATGCAGAGTCAA+GGG | - | chr1_3:58958933-58958952 | Msa0129150:intron | 30.0% | |
| AAGTAGCATCAATACTTGTT+TGG | - | chr1_3:58959076-58959095 | Msa0129150:intron | 30.0% | |
| AGTAGCATCAATACTTGTTT+GGG | - | chr1_3:58959077-58959096 | Msa0129150:intron | 30.0% | |
| CTAGGGATTAAGACTTTATT+TGG | - | chr1_3:58959102-58959121 | Msa0129150:CDS | 30.0% | |
| ! | GACTTTATTTGGAATTCCTT+TGG | - | chr1_3:58959113-58959132 | Msa0129150:CDS | 30.0% |
| AAGACCTTATGTTAATGCTT+GGG | - | chr1_3:58959311-58959330 | Msa0129150:CDS | 30.0% | |
| !!! | GATATTTGGGTGTTGTTTTA+TGG | - | chr1_3:58959405-58959424 | Msa0129150:five_prime_UTR | 30.0% |
| CAGATATGTATGTAGTACTA+TGG | + | chr1_3:58958428-58958447 | None:intergenic | 30.0% | |
| ACATACATATCTGCAAATCA+TGG | - | chr1_3:58958435-58958454 | Msa0129150:three_prime_UTR | 30.0% | |
| AGTTTGTAAGCATTAACATG+AGG | - | chr1_3:58958542-58958561 | Msa0129150:CDS | 30.0% | |
| ! | GCTTACATTGATTGATATGA+AGG | + | chr1_3:58958590-58958609 | None:intergenic | 30.0% |
| ! | ATTAGTTTGATCAATGTGGT+TGG | + | chr1_3:58958677-58958696 | None:intergenic | 30.0% |
| AAAATTGAAATGCAGAGTCA+AGG | - | chr1_3:58958932-58958951 | Msa0129150:intron | 30.0% | |
| AAATTGAAATGCAGAGTCAA+GGG | - | chr1_3:58958933-58958952 | Msa0129150:intron | 30.0% | |
| AAGTAGCATCAATACTTGTT+TGG | - | chr1_3:58959076-58959095 | Msa0129150:intron | 30.0% | |
| AGTAGCATCAATACTTGTTT+GGG | - | chr1_3:58959077-58959096 | Msa0129150:intron | 30.0% | |
| CTAGGGATTAAGACTTTATT+TGG | - | chr1_3:58959102-58959121 | Msa0129150:CDS | 30.0% | |
| ! | GACTTTATTTGGAATTCCTT+TGG | - | chr1_3:58959113-58959132 | Msa0129150:CDS | 30.0% |
| AAGACCTTATGTTAATGCTT+GGG | - | chr1_3:58959311-58959330 | Msa0129150:CDS | 30.0% | |
| !!! | GATATTTGGGTGTTGTTTTA+TGG | - | chr1_3:58959405-58959424 | Msa0129150:five_prime_UTR | 30.0% |
| ! | ATGGCAACAATAAAAGTGCA+CGG | - | chr1_3:58958454-58958473 | Msa0129150:exon | 35.0% |
| GTAAGCATTAACATGAGGAA+TGG | - | chr1_3:58958547-58958566 | Msa0129150:CDS | 35.0% | |
| TTCTTTATGTTGCAGCCATT+TGG | - | chr1_3:58958704-58958723 | Msa0129150:CDS | 35.0% | |
| AAATCTCCATCTTCAAAAGC+TGG | + | chr1_3:58958737-58958756 | None:intergenic | 35.0% | |
| ! | GATGGAGATTTAAAGCTCTT+TGG | - | chr1_3:58958746-58958765 | Msa0129150:CDS | 35.0% |
| TGATCATGAGTATGCTGATA+AGG | - | chr1_3:58958972-58958991 | Msa0129150:intron | 35.0% | |
| GATCATGAGTATGCTGATAA+GGG | - | chr1_3:58958973-58958992 | Msa0129150:intron | 35.0% | |
| ATCATGAGTATGCTGATAAG+GGG | - | chr1_3:58958974-58958993 | Msa0129150:intron | 35.0% | |
| ACTCATTATTGCCATCTTCT+TGG | + | chr1_3:58959022-58959041 | None:intergenic | 35.0% | |
| !! | ATGCTACTTTATCGTAGTGT+AGG | + | chr1_3:58959065-58959084 | None:intergenic | 35.0% |
| TCAATACTTGTTTGGGAACT+AGG | - | chr1_3:58959084-58959103 | Msa0129150:intron | 35.0% | |
| CAATACTTGTTTGGGAACTA+GGG | - | chr1_3:58959085-58959104 | Msa0129150:intron | 35.0% | |
| TCCTTTGGATTCAAAAGTTG+TGG | - | chr1_3:58959128-58959147 | Msa0129150:intron | 35.0% | |
| ! | TCCACAACTTTTGAATCCAA+AGG | + | chr1_3:58959132-58959151 | None:intergenic | 35.0% |
| ATCAAGAATGCTATCCAACT+TGG | + | chr1_3:58959166-58959185 | None:intergenic | 35.0% | |
| TCTGAATCTAAATACATGGG+AGG | - | chr1_3:58959204-58959223 | Msa0129150:intron | 35.0% | |
| TAAATGATGCAAATCCACCA+AGG | + | chr1_3:58959241-58959260 | None:intergenic | 35.0% | |
| TTCATCAAGTAGTGAAGAGA+AGG | + | chr1_3:58959264-58959283 | None:intergenic | 35.0% | |
| CAAGACCTTATGTTAATGCT+TGG | - | chr1_3:58959310-58959329 | Msa0129150:CDS | 35.0% | |
| TCAACCCAAGCATTAACATA+AGG | + | chr1_3:58959318-58959337 | None:intergenic | 35.0% | |
| ! | ATGGCAACAATAAAAGTGCA+CGG | - | chr1_3:58958454-58958473 | Msa0129150:exon | 35.0% |
| GTAAGCATTAACATGAGGAA+TGG | - | chr1_3:58958547-58958566 | Msa0129150:CDS | 35.0% | |
| TTCTTTATGTTGCAGCCATT+TGG | - | chr1_3:58958704-58958723 | Msa0129150:CDS | 35.0% | |
| AAATCTCCATCTTCAAAAGC+TGG | + | chr1_3:58958737-58958756 | None:intergenic | 35.0% | |
| ! | GATGGAGATTTAAAGCTCTT+TGG | - | chr1_3:58958746-58958765 | Msa0129150:CDS | 35.0% |
| TGATCATGAGTATGCTGATA+AGG | - | chr1_3:58958972-58958991 | Msa0129150:intron | 35.0% | |
| GATCATGAGTATGCTGATAA+GGG | - | chr1_3:58958973-58958992 | Msa0129150:intron | 35.0% | |
| ATCATGAGTATGCTGATAAG+GGG | - | chr1_3:58958974-58958993 | Msa0129150:intron | 35.0% | |
| ACTCATTATTGCCATCTTCT+TGG | + | chr1_3:58959022-58959041 | None:intergenic | 35.0% | |
| !! | ATGCTACTTTATCGTAGTGT+AGG | + | chr1_3:58959065-58959084 | None:intergenic | 35.0% |
| TCAATACTTGTTTGGGAACT+AGG | - | chr1_3:58959084-58959103 | Msa0129150:intron | 35.0% | |
| CAATACTTGTTTGGGAACTA+GGG | - | chr1_3:58959085-58959104 | Msa0129150:intron | 35.0% | |
| TCCTTTGGATTCAAAAGTTG+TGG | - | chr1_3:58959128-58959147 | Msa0129150:intron | 35.0% | |
| ! | TCCACAACTTTTGAATCCAA+AGG | + | chr1_3:58959132-58959151 | None:intergenic | 35.0% |
| ATCAAGAATGCTATCCAACT+TGG | + | chr1_3:58959166-58959185 | None:intergenic | 35.0% | |
| TCTGAATCTAAATACATGGG+AGG | - | chr1_3:58959204-58959223 | Msa0129150:intron | 35.0% | |
| TAAATGATGCAAATCCACCA+AGG | + | chr1_3:58959241-58959260 | None:intergenic | 35.0% | |
| TTCATCAAGTAGTGAAGAGA+AGG | + | chr1_3:58959264-58959283 | None:intergenic | 35.0% | |
| CAAGACCTTATGTTAATGCT+TGG | - | chr1_3:58959310-58959329 | Msa0129150:CDS | 35.0% | |
| TCAACCCAAGCATTAACATA+AGG | + | chr1_3:58959318-58959337 | None:intergenic | 35.0% | |
| GAGGAATGGTGAACACAAAA+AGG | - | chr1_3:58958561-58958580 | Msa0129150:CDS | 40.0% | |
| TCAATGTGGTTGGAACAAGA+AGG | + | chr1_3:58958667-58958686 | None:intergenic | 40.0% | |
| AAAGCTGGAACTTGACCAAA+TGG | + | chr1_3:58958722-58958741 | None:intergenic | 40.0% | |
| !! | CAAGTTCCAGCTTTTGAAGA+TGG | - | chr1_3:58958728-58958747 | Msa0129150:CDS | 40.0% |
| AGATGGCAATAATGAGTGTG+TGG | - | chr1_3:58959025-58959044 | Msa0129150:intron | 40.0% | |
| GAGGAATGGTGAACACAAAA+AGG | - | chr1_3:58958561-58958580 | Msa0129150:CDS | 40.0% | |
| TCAATGTGGTTGGAACAAGA+AGG | + | chr1_3:58958667-58958686 | None:intergenic | 40.0% | |
| AAAGCTGGAACTTGACCAAA+TGG | + | chr1_3:58958722-58958741 | None:intergenic | 40.0% | |
| !! | CAAGTTCCAGCTTTTGAAGA+TGG | - | chr1_3:58958728-58958747 | Msa0129150:CDS | 40.0% |
| AGATGGCAATAATGAGTGTG+TGG | - | chr1_3:58959025-58959044 | Msa0129150:intron | 40.0% | |
| GACACGATATCAAACACACG+TGG | - | chr1_3:58958830-58958849 | Msa0129150:CDS | 45.0% | |
| AAGCAGTGACTCCAAGAAGA+TGG | - | chr1_3:58959008-58959027 | Msa0129150:intron | 45.0% | |
| GGCAATAATGAGTGTGTGGT+CGG | - | chr1_3:58959029-58959048 | Msa0129150:intron | 45.0% | |
| GGAAGAGAATGAAGCCAAGT+TGG | - | chr1_3:58959149-58959168 | Msa0129150:intron | 45.0% | |
| ATATCACTGCAAGACCAGCT+TGG | - | chr1_3:58959340-58959359 | Msa0129150:CDS | 45.0% | |
| GCAAGTACTTTAGACCAAGC+TGG | + | chr1_3:58959357-58959376 | None:intergenic | 45.0% | |
| GACACGATATCAAACACACG+TGG | - | chr1_3:58958830-58958849 | Msa0129150:CDS | 45.0% | |
| AAGCAGTGACTCCAAGAAGA+TGG | - | chr1_3:58959008-58959027 | Msa0129150:intron | 45.0% | |
| GGCAATAATGAGTGTGTGGT+CGG | - | chr1_3:58959029-58959048 | Msa0129150:intron | 45.0% | |
| GGAAGAGAATGAAGCCAAGT+TGG | - | chr1_3:58959149-58959168 | Msa0129150:intron | 45.0% | |
| ATATCACTGCAAGACCAGCT+TGG | - | chr1_3:58959340-58959359 | Msa0129150:CDS | 45.0% | |
| GCAAGTACTTTAGACCAAGC+TGG | + | chr1_3:58959357-58959376 | None:intergenic | 45.0% | |
| AATGAGTGTGTGGTCGGAAG+TGG | - | chr1_3:58959035-58959054 | Msa0129150:intron | 50.0% | |
| AGGTGAGTGTTTCACCTTGG+TGG | - | chr1_3:58959224-58959243 | Msa0129150:intron | 50.0% | |
| AATGAGTGTGTGGTCGGAAG+TGG | - | chr1_3:58959035-58959054 | Msa0129150:intron | 50.0% | |
| AGGTGAGTGTTTCACCTTGG+TGG | - | chr1_3:58959224-58959243 | Msa0129150:intron | 50.0% | |
| GCACGGAAGCCCTATCTCAA+CGG | - | chr1_3:58958471-58958490 | Msa0129150:CDS | 55.0% | |
| GCATGGTGGCCGTTGAGATA+GGG | + | chr1_3:58958483-58958502 | None:intergenic | 55.0% | |
| CTATCTCAACGGCCACCATG+CGG | - | chr1_3:58958482-58958501 | Msa0129150:CDS | 55.0% | |
| TATCTCAACGGCCACCATGC+GGG | - | chr1_3:58958483-58958502 | Msa0129150:CDS | 55.0% | |
| AGTTGCAGTAACCCGCATGG+TGG | + | chr1_3:58958497-58958516 | None:intergenic | 55.0% | |
| CAGAGTTGCAGTAACCCGCA+TGG | + | chr1_3:58958500-58958519 | None:intergenic | 55.0% | |
| GGGAGGTGAGTGTTTCACCT+TGG | - | chr1_3:58959221-58959240 | Msa0129150:intron | 55.0% | |
| GCACGGAAGCCCTATCTCAA+CGG | - | chr1_3:58958471-58958490 | Msa0129150:CDS | 55.0% | |
| GCATGGTGGCCGTTGAGATA+GGG | + | chr1_3:58958483-58958502 | None:intergenic | 55.0% | |
| CTATCTCAACGGCCACCATG+CGG | - | chr1_3:58958482-58958501 | Msa0129150:CDS | 55.0% | |
| TATCTCAACGGCCACCATGC+GGG | - | chr1_3:58958483-58958502 | Msa0129150:CDS | 55.0% | |
| AGTTGCAGTAACCCGCATGG+TGG | + | chr1_3:58958497-58958516 | None:intergenic | 55.0% | |
| CAGAGTTGCAGTAACCCGCA+TGG | + | chr1_3:58958500-58958519 | None:intergenic | 55.0% | |
| GGGAGGTGAGTGTTTCACCT+TGG | - | chr1_3:58959221-58959240 | Msa0129150:intron | 55.0% | |
| CGCATGGTGGCCGTTGAGAT+AGG | + | chr1_3:58958484-58958503 | None:intergenic | 60.0% | |
| CGCATGGTGGCCGTTGAGAT+AGG | + | chr1_3:58958484-58958503 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58958411 | 58959444 | 58958411 | ID=Msa0129150;Name=Msa0129150 |
| chr1_3 | mRNA | 58958411 | 58959444 | 58958411 | ID=Msa0129150-mRNA-1;Parent=Msa0129150;Name=Msa0129150-mRNA-1;_AED=0.31;_eAED=0.31;_QI=43|1|1|1|1|1|3|52|214 |
| chr1_3 | exon | 58958411 | 58958908 | 58958411 | ID=Msa0129150-mRNA-1:exon:19118;Parent=Msa0129150-mRNA-1 |
| chr1_3 | exon | 58959088 | 58959136 | 58959088 | ID=Msa0129150-mRNA-1:exon:19117;Parent=Msa0129150-mRNA-1 |
| chr1_3 | exon | 58959252 | 58959444 | 58959252 | ID=Msa0129150-mRNA-1:exon:19116;Parent=Msa0129150-mRNA-1 |
| chr1_3 | five_prime_UTR | 58959402 | 58959444 | 58959402 | ID=Msa0129150-mRNA-1:five_prime_utr;Parent=Msa0129150-mRNA-1 |
| chr1_3 | CDS | 58959252 | 58959401 | 58959252 | ID=Msa0129150-mRNA-1:cds;Parent=Msa0129150-mRNA-1 |
| chr1_3 | CDS | 58959088 | 58959136 | 58959088 | ID=Msa0129150-mRNA-1:cds;Parent=Msa0129150-mRNA-1 |
| chr1_3 | CDS | 58958463 | 58958908 | 58958463 | ID=Msa0129150-mRNA-1:cds;Parent=Msa0129150-mRNA-1 |
| chr1_3 | three_prime_UTR | 58958411 | 58958462 | 58958411 | ID=Msa0129150-mRNA-1:three_prime_utr;Parent=Msa0129150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
