Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793660 | XP_003610727.1 | 95.000 | 140 | 6 | 1 | 1 | 139 | 1 | 140 | 1.62e-91 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793660 | G7K3N2 | 95.000 | 140 | 6 | 1 | 1 | 139 | 1 | 140 | 7.73e-92 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0654410 | Msa0793660 | 0.816390 | 5.668284e-52 | -8.615850e-47 |
| Msa0793660 | Msa1071180 | 0.946759 | 2.497402e-105 | -8.615850e-47 |
| Msa0559650 | Msa0793660 | 0.830728 | 2.494285e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793660 | MtrunA17_Chr5g0394511 | 95.000 | 140 | 6 | 1 | 1 | 139 | 1 | 140 | 1.49e-95 | 271 |
| Msa0793660 | MtrunA17_Chr5g0394521 | 65.278 | 144 | 39 | 5 | 1 | 139 | 1 | 138 | 3.64e-58 | 177 |
| Msa0793660 | MtrunA17_Chr4g0020201 | 27.536 | 138 | 89 | 3 | 4 | 138 | 37 | 166 | 6.77e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793660 | AT2G32090.1 | 72.932 | 133 | 36 | 0 | 4 | 136 | 2 | 134 | 1.52e-75 | 221 |
| Msa0793660 | AT2G32090.2 | 75.676 | 111 | 27 | 0 | 26 | 136 | 2 | 112 | 4.74e-63 | 188 |
| Msa0793660 | AT2G28420.1 | 28.777 | 139 | 84 | 4 | 4 | 138 | 19 | 146 | 1.86e-14 | 67.0 |
Find 50 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCAAGTTCGGAGAGTTTA+AGG | 0.169316 | 5_3:-5571343 | Msa0793660:CDS |
| AGTTACCTCTTGATAGAATT+TGG | 0.196394 | 5_3:+5571494 | None:intergenic |
| TTGGAGGAAAGATTGGAAAT+TGG | 0.244848 | 5_3:+5571170 | None:intergenic |
| AAAAGAAAACCTTGAGAGTT+TGG | 0.264541 | 5_3:+5571151 | None:intergenic |
| TGGAGGAAAGATTGGAAATT+GGG | 0.290951 | 5_3:+5571171 | None:intergenic |
| GTGGCACTCCATGGACCTTC+AGG | 0.291137 | 5_3:+5571252 | None:intergenic |
| TGAGAGTTTGGAGGAAAGAT+TGG | 0.336659 | 5_3:+5571163 | None:intergenic |
| AGAGAAAAGTGAAGCTGAAA+TGG | 0.368788 | 5_3:-5571571 | Msa0793660:exon |
| CGGTGGACTCTCGAGATATA+TGG | 0.373213 | 5_3:+5571532 | None:intergenic |
| TTTGAGAAATCTCTGCCTAA+TGG | 0.386060 | 5_3:-5570549 | Msa0793660:CDS |
| AACCTTAAACTCTCCGAACT+TGG | 0.393413 | 5_3:+5571341 | None:intergenic |
| GATGTTCTTAAATGACAATA+AGG | 0.399537 | 5_3:+5570298 | None:intergenic |
| TCGGAGAGTTTAAGGTTGTA+TGG | 0.409502 | 5_3:-5571335 | Msa0793660:CDS |
| CTTCAGGGAGATTGTTGGAT+GGG | 0.413649 | 5_3:+5571268 | None:intergenic |
| AGATGGGAAGGGTCTTTAAC+AGG | 0.425313 | 5_3:+5571225 | None:intergenic |
| GAAGTAGAAAGTCCCAAGTT+CGG | 0.482224 | 5_3:-5571354 | Msa0793660:CDS |
| CCTTCAGGGAGATTGTTGGA+TGG | 0.483246 | 5_3:+5571267 | None:intergenic |
| GATGATGGCCTCTAGGAAGA+TGG | 0.486052 | 5_3:+5571208 | None:intergenic |
| ATCTTTCCTCCAAACTCTCA+AGG | 0.486071 | 5_3:-5571160 | Msa0793660:intron |
| TGGACCTTCAGGGAGATTGT+TGG | 0.488258 | 5_3:+5571263 | None:intergenic |
| ATCTGTAGGTAATGGCTTGG+AGG | 0.496826 | 5_3:-5570390 | Msa0793660:intron |
| AGGTGAAGATACAATGAAGA+TGG | 0.500818 | 5_3:+5571303 | None:intergenic |
| AAGCAGAGATGATGGCCTCT+AGG | 0.507231 | 5_3:+5571201 | None:intergenic |
| GGACAGAGAAGCAGAGATGA+TGG | 0.508377 | 5_3:+5571193 | None:intergenic |
| TCAATCTGTAGGTAATGGCT+TGG | 0.513155 | 5_3:-5570393 | Msa0793660:intron |
| TGGCACTCCATGGACCTTCA+GGG | 0.526229 | 5_3:+5571253 | None:intergenic |
| GGCAAGGCGGTTTACATCGG+TGG | 0.530632 | 5_3:+5571515 | None:intergenic |
| ACCTTAAACTCTCCGAACTT+GGG | 0.532859 | 5_3:+5571342 | None:intergenic |
| ATGATGGCCTCTAGGAAGAT+GGG | 0.534418 | 5_3:+5571209 | None:intergenic |
| TGGCTTGGAGGTTGCAAGCA+AGG | 0.537704 | 5_3:-5570378 | Msa0793660:CDS |
| GGAGGAAAGATTGGAAATTG+GGG | 0.538696 | 5_3:+5571172 | None:intergenic |
| ACAATCTCCCTGAAGGTCCA+TGG | 0.539494 | 5_3:-5571260 | Msa0793660:CDS |
| AGAAAACCTTGAGAGTTTGG+AGG | 0.543197 | 5_3:+5571154 | None:intergenic |
| ACAGGAGAGGTGGCACTCCA+TGG | 0.546931 | 5_3:+5571243 | None:intergenic |
| TGGCCTCTAGGAAGATGGGA+AGG | 0.592110 | 5_3:+5571213 | None:intergenic |
| TTTGGCAAGGCGGTTTACAT+CGG | 0.596297 | 5_3:+5571512 | None:intergenic |
| GCAATTACAGCAGCATCTAG+AGG | 0.599720 | 5_3:+5570242 | None:intergenic |
| CCTTGCCAAATTCTATCAAG+AGG | 0.600369 | 5_3:-5571499 | Msa0793660:intron |
| CCTCTTGATAGAATTTGGCA+AGG | 0.604080 | 5_3:+5571499 | None:intergenic |
| ACATGCATATCAAAGTAACT+AGG | 0.606119 | 5_3:+5570349 | None:intergenic |
| CAATTACAGCAGCATCTAGA+GGG | 0.610460 | 5_3:+5570243 | None:intergenic |
| CCATCCAACAATCTCCCTGA+AGG | 0.629938 | 5_3:-5571267 | Msa0793660:CDS |
| GGCCTCTAGGAAGATGGGAA+GGG | 0.632526 | 5_3:+5571214 | None:intergenic |
| ACTACATAGTCTTACCATCA+GGG | 0.643829 | 5_3:+5570499 | None:intergenic |
| AGGGTCTTTAACAGGAGAGG+TGG | 0.645849 | 5_3:+5571233 | None:intergenic |
| CTTGATAGAATTTGGCAAGG+CGG | 0.647178 | 5_3:+5571502 | None:intergenic |
| GGAAGGGTCTTTAACAGGAG+AGG | 0.653406 | 5_3:+5571230 | None:intergenic |
| GACCCTTCCCATCTTCCTAG+AGG | 0.663206 | 5_3:-5571216 | Msa0793660:CDS |
| TTACAGCAGCATCTAGAGGG+AGG | 0.687200 | 5_3:+5570246 | None:intergenic |
| TGGATGGGTTGCGCTCGATG+AGG | 0.700869 | 5_3:+5571283 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAAAAGTTAATGTATT+TGG | + | chr5_3:5570705-5570724 | None:intergenic | 10.0% |
| !! | TTAATAAAAGTTAATGTATT+TGG | + | chr5_3:5570705-5570724 | None:intergenic | 10.0% |
| !! | ATACTATAATACTATATGTT+TGG | - | chr5_3:5570383-5570402 | Msa0793660:CDS | 15.0% |
| !!! | TAATATGATTTTCAGATATT+TGG | - | chr5_3:5570416-5570435 | Msa0793660:intron | 15.0% |
| !! | TTGATTATGTAAAATTGATT+TGG | - | chr5_3:5570880-5570899 | Msa0793660:intron | 15.0% |
| !! | ATGATTAGTGATTATTATTA+TGG | - | chr5_3:5570918-5570937 | Msa0793660:intron | 15.0% |
| !!! | TACACTAATTTTTTTGTATT+AGG | - | chr5_3:5571121-5571140 | Msa0793660:intron | 15.0% |
| !!! | AAGCTTTATTTTATGAATAA+AGG | + | chr5_3:5571585-5571604 | None:intergenic | 15.0% |
| !! | ATACTATAATACTATATGTT+TGG | - | chr5_3:5570383-5570402 | Msa0793660:CDS | 15.0% |
| !!! | TAATATGATTTTCAGATATT+TGG | - | chr5_3:5570416-5570435 | Msa0793660:intron | 15.0% |
| !! | TTGATTATGTAAAATTGATT+TGG | - | chr5_3:5570880-5570899 | Msa0793660:intron | 15.0% |
| !! | ATGATTAGTGATTATTATTA+TGG | - | chr5_3:5570918-5570937 | Msa0793660:intron | 15.0% |
| !!! | TACACTAATTTTTTTGTATT+AGG | - | chr5_3:5571121-5571140 | Msa0793660:intron | 15.0% |
| !!! | AAGCTTTATTTTATGAATAA+AGG | + | chr5_3:5571585-5571604 | None:intergenic | 15.0% |
| !!! | TTATATTTATTTAAGACACG+AGG | - | chr5_3:5570737-5570756 | Msa0793660:intron | 20.0% |
| !!! | TATATTTATTTAAGACACGA+GGG | - | chr5_3:5570738-5570757 | Msa0793660:intron | 20.0% |
| !!! | CTCACTTAATTATGAAATTT+TGG | + | chr5_3:5570821-5570840 | None:intergenic | 20.0% |
| !! | TTCATAATTAAGTGAGTATT+TGG | - | chr5_3:5570825-5570844 | Msa0793660:intron | 20.0% |
| !!! | AAAGCTAAAAAATTAGTTTG+AGG | - | chr5_3:5570977-5570996 | Msa0793660:intron | 20.0% |
| !!! | TTAAGTTAGAATAGTTTTAC+TGG | - | chr5_3:5571021-5571040 | Msa0793660:intron | 20.0% |
| !!! | AATATGAAGTTTTGTATTTG+AGG | - | chr5_3:5571166-5571185 | Msa0793660:CDS | 20.0% |
| !!! | ATATGAAGTTTTGTATTTGA+GGG | - | chr5_3:5571167-5571186 | Msa0793660:CDS | 20.0% |
| !!! | ATTGTTATTATTCTCTGAAT+TGG | - | chr5_3:5571352-5571371 | Msa0793660:CDS | 20.0% |
| !!! | TTATATTTATTTAAGACACG+AGG | - | chr5_3:5570737-5570756 | Msa0793660:intron | 20.0% |
| !!! | TATATTTATTTAAGACACGA+GGG | - | chr5_3:5570738-5570757 | Msa0793660:intron | 20.0% |
| !!! | CTCACTTAATTATGAAATTT+TGG | + | chr5_3:5570821-5570840 | None:intergenic | 20.0% |
| !! | TTCATAATTAAGTGAGTATT+TGG | - | chr5_3:5570825-5570844 | Msa0793660:intron | 20.0% |
| !!! | AAAGCTAAAAAATTAGTTTG+AGG | - | chr5_3:5570977-5570996 | Msa0793660:intron | 20.0% |
| !!! | TTAAGTTAGAATAGTTTTAC+TGG | - | chr5_3:5571021-5571040 | Msa0793660:intron | 20.0% |
| !!! | AATATGAAGTTTTGTATTTG+AGG | - | chr5_3:5571166-5571185 | Msa0793660:CDS | 20.0% |
| !!! | ATATGAAGTTTTGTATTTGA+GGG | - | chr5_3:5571167-5571186 | Msa0793660:CDS | 20.0% |
| !!! | ATTGTTATTATTCTCTGAAT+TGG | - | chr5_3:5571352-5571371 | Msa0793660:CDS | 20.0% |
| !! | TTTTCAGATATTTGGATTTG+AGG | - | chr5_3:5570424-5570443 | Msa0793660:intron | 25.0% |
| !!! | AAGGTGACAAAATTTGTTTT+TGG | - | chr5_3:5570852-5570871 | Msa0793660:intron | 25.0% |
| ! | AAACTATTCTAACTTAAAGC+CGG | + | chr5_3:5571018-5571037 | None:intergenic | 25.0% |
| !!! | AATTTTAACTACTCCAAAAG+TGG | - | chr5_3:5571089-5571108 | Msa0793660:intron | 25.0% |
| ! | CAAAAAAATTAGTGTACGTT+TGG | + | chr5_3:5571117-5571136 | None:intergenic | 25.0% |
| !!! | TATGAAGTTTTGTATTTGAG+GGG | - | chr5_3:5571168-5571187 | Msa0793660:CDS | 25.0% |
| !!! | TTTGTTTGTTTGTTTTATGC+AGG | - | chr5_3:5571211-5571230 | Msa0793660:CDS | 25.0% |
| ! | TTACCTACAGATTGATATTA+GGG | + | chr5_3:5571402-5571421 | None:intergenic | 25.0% |
| ! | ATTACCTACAGATTGATATT+AGG | + | chr5_3:5571403-5571422 | None:intergenic | 25.0% |
| ! | TAATATCAATCTGTAGGTAA+TGG | - | chr5_3:5571402-5571421 | Msa0793660:intron | 25.0% |
| ! | GATGTTCTTAAATGACAATA+AGG | + | chr5_3:5571505-5571524 | None:intergenic | 25.0% |
| !! | TTTTCAGATATTTGGATTTG+AGG | - | chr5_3:5570424-5570443 | Msa0793660:intron | 25.0% |
| !!! | AAGGTGACAAAATTTGTTTT+TGG | - | chr5_3:5570852-5570871 | Msa0793660:intron | 25.0% |
| ! | AAACTATTCTAACTTAAAGC+CGG | + | chr5_3:5571018-5571037 | None:intergenic | 25.0% |
| !!! | AATTTTAACTACTCCAAAAG+TGG | - | chr5_3:5571089-5571108 | Msa0793660:intron | 25.0% |
| ! | CAAAAAAATTAGTGTACGTT+TGG | + | chr5_3:5571117-5571136 | None:intergenic | 25.0% |
| !!! | TATGAAGTTTTGTATTTGAG+GGG | - | chr5_3:5571168-5571187 | Msa0793660:CDS | 25.0% |
| !!! | TTTGTTTGTTTGTTTTATGC+AGG | - | chr5_3:5571211-5571230 | Msa0793660:CDS | 25.0% |
| ! | TTACCTACAGATTGATATTA+GGG | + | chr5_3:5571402-5571421 | None:intergenic | 25.0% |
| ! | ATTACCTACAGATTGATATT+AGG | + | chr5_3:5571403-5571422 | None:intergenic | 25.0% |
| ! | TAATATCAATCTGTAGGTAA+TGG | - | chr5_3:5571402-5571421 | Msa0793660:intron | 25.0% |
| ! | GATGTTCTTAAATGACAATA+AGG | + | chr5_3:5571505-5571524 | None:intergenic | 25.0% |
| AGTTACCTCTTGATAGAATT+TGG | + | chr5_3:5570309-5570328 | None:intergenic | 30.0% | |
| AAAAGAAAACCTTGAGAGTT+TGG | + | chr5_3:5570652-5570671 | None:intergenic | 30.0% | |
| ! | GGTTTTCTTTTCATTTCCTA+TGG | - | chr5_3:5570661-5570680 | Msa0793660:intron | 30.0% |
| !! | TAAGTGAGTATTTGGTTCTA+AGG | - | chr5_3:5570833-5570852 | Msa0793660:intron | 30.0% |
| GAAATTAACTCTAAACAACC+TGG | - | chr5_3:5571062-5571081 | Msa0793660:intron | 30.0% | |
| ! | GAGTAGTTAAAATTGATTCC+AGG | + | chr5_3:5571083-5571102 | None:intergenic | 30.0% |
| !!! | TGTTTGTTTTATGCAGGATA+AGG | - | chr5_3:5571217-5571236 | Msa0793660:CDS | 30.0% |
| !!! | GTTTGTTTTATGCAGGATAA+GGG | - | chr5_3:5571218-5571237 | Msa0793660:CDS | 30.0% |
| !! | ACTTGTTTGATTTTGCCATT+AGG | + | chr5_3:5571269-5571288 | None:intergenic | 30.0% |
| TACCTACAGATTGATATTAG+GGG | + | chr5_3:5571401-5571420 | None:intergenic | 30.0% | |
| ACATGCATATCAAAGTAACT+AGG | + | chr5_3:5571454-5571473 | None:intergenic | 30.0% | |
| AGTTACCTCTTGATAGAATT+TGG | + | chr5_3:5570309-5570328 | None:intergenic | 30.0% | |
| AAAAGAAAACCTTGAGAGTT+TGG | + | chr5_3:5570652-5570671 | None:intergenic | 30.0% | |
| ! | GGTTTTCTTTTCATTTCCTA+TGG | - | chr5_3:5570661-5570680 | Msa0793660:intron | 30.0% |
| !! | TAAGTGAGTATTTGGTTCTA+AGG | - | chr5_3:5570833-5570852 | Msa0793660:intron | 30.0% |
| GAAATTAACTCTAAACAACC+TGG | - | chr5_3:5571062-5571081 | Msa0793660:intron | 30.0% | |
| ! | GAGTAGTTAAAATTGATTCC+AGG | + | chr5_3:5571083-5571102 | None:intergenic | 30.0% |
| !!! | TGTTTGTTTTATGCAGGATA+AGG | - | chr5_3:5571217-5571236 | Msa0793660:CDS | 30.0% |
| !!! | GTTTGTTTTATGCAGGATAA+GGG | - | chr5_3:5571218-5571237 | Msa0793660:CDS | 30.0% |
| !! | ACTTGTTTGATTTTGCCATT+AGG | + | chr5_3:5571269-5571288 | None:intergenic | 30.0% |
| TACCTACAGATTGATATTAG+GGG | + | chr5_3:5571401-5571420 | None:intergenic | 30.0% | |
| ACATGCATATCAAAGTAACT+AGG | + | chr5_3:5571454-5571473 | None:intergenic | 30.0% | |
| AGAGAAAAGTGAAGCTGAAA+TGG | - | chr5_3:5570229-5570248 | Msa0793660:three_prime_UTR | 35.0% | |
| AGGTGAAGATACAATGAAGA+TGG | + | chr5_3:5570500-5570519 | None:intergenic | 35.0% | |
| TGGAGGAAAGATTGGAAATT+GGG | + | chr5_3:5570632-5570651 | None:intergenic | 35.0% | |
| TTGGAGGAAAGATTGGAAAT+TGG | + | chr5_3:5570633-5570652 | None:intergenic | 35.0% | |
| ! | TCTTTTCATTTCCTATGGTC+CGG | - | chr5_3:5570666-5570685 | Msa0793660:intron | 35.0% |
| TGGTCATATGCATGTAAAAC+TGG | - | chr5_3:5570938-5570957 | Msa0793660:intron | 35.0% | |
| GGTCATATGCATGTAAAACT+GGG | - | chr5_3:5570939-5570958 | Msa0793660:intron | 35.0% | |
| GAGGTAAAAGCTTCAAAATC+CGG | - | chr5_3:5570996-5571015 | Msa0793660:intron | 35.0% | |
| TTTGAGAAATCTCTGCCTAA+TGG | - | chr5_3:5571251-5571270 | Msa0793660:CDS | 35.0% | |
| ! | ACTACATAGTCTTACCATCA+GGG | + | chr5_3:5571304-5571323 | None:intergenic | 35.0% |
| ! | TACTACATAGTCTTACCATC+AGG | + | chr5_3:5571305-5571324 | None:intergenic | 35.0% |
| AACCCCTAATATCAATCTGT+AGG | - | chr5_3:5571396-5571415 | Msa0793660:intron | 35.0% | |
| AGAGAAAAGTGAAGCTGAAA+TGG | - | chr5_3:5570229-5570248 | Msa0793660:three_prime_UTR | 35.0% | |
| AGGTGAAGATACAATGAAGA+TGG | + | chr5_3:5570500-5570519 | None:intergenic | 35.0% | |
| TGGAGGAAAGATTGGAAATT+GGG | + | chr5_3:5570632-5570651 | None:intergenic | 35.0% | |
| TTGGAGGAAAGATTGGAAAT+TGG | + | chr5_3:5570633-5570652 | None:intergenic | 35.0% | |
| ! | TCTTTTCATTTCCTATGGTC+CGG | - | chr5_3:5570666-5570685 | Msa0793660:intron | 35.0% |
| TGGTCATATGCATGTAAAAC+TGG | - | chr5_3:5570938-5570957 | Msa0793660:intron | 35.0% | |
| GGTCATATGCATGTAAAACT+GGG | - | chr5_3:5570939-5570958 | Msa0793660:intron | 35.0% | |
| GAGGTAAAAGCTTCAAAATC+CGG | - | chr5_3:5570996-5571015 | Msa0793660:intron | 35.0% | |
| TTTGAGAAATCTCTGCCTAA+TGG | - | chr5_3:5571251-5571270 | Msa0793660:CDS | 35.0% | |
| ! | ACTACATAGTCTTACCATCA+GGG | + | chr5_3:5571304-5571323 | None:intergenic | 35.0% |
| ! | TACTACATAGTCTTACCATC+AGG | + | chr5_3:5571305-5571324 | None:intergenic | 35.0% |
| AACCCCTAATATCAATCTGT+AGG | - | chr5_3:5571396-5571415 | Msa0793660:intron | 35.0% | |
| CTTGATAGAATTTGGCAAGG+CGG | + | chr5_3:5570301-5570320 | None:intergenic | 40.0% | |
| CCTCTTGATAGAATTTGGCA+AGG | + | chr5_3:5570304-5570323 | None:intergenic | 40.0% | |
| CCTTGCCAAATTCTATCAAG+AGG | - | chr5_3:5570301-5570320 | Msa0793660:three_prime_UTR | 40.0% | |
| GAAGTAGAAAGTCCCAAGTT+CGG | - | chr5_3:5570446-5570465 | Msa0793660:intron | 40.0% | |
| ACCTTAAACTCTCCGAACTT+GGG | + | chr5_3:5570461-5570480 | None:intergenic | 40.0% | |
| AACCTTAAACTCTCCGAACT+TGG | + | chr5_3:5570462-5570481 | None:intergenic | 40.0% | |
| ! | TCGGAGAGTTTAAGGTTGTA+TGG | - | chr5_3:5570465-5570484 | Msa0793660:intron | 40.0% |
| GGAGGAAAGATTGGAAATTG+GGG | + | chr5_3:5570631-5570650 | None:intergenic | 40.0% | |
| TGAGAGTTTGGAGGAAAGAT+TGG | + | chr5_3:5570640-5570659 | None:intergenic | 40.0% | |
| ATCTTTCCTCCAAACTCTCA+AGG | - | chr5_3:5570640-5570659 | Msa0793660:intron | 40.0% | |
| AGAAAACCTTGAGAGTTTGG+AGG | + | chr5_3:5570649-5570668 | None:intergenic | 40.0% | |
| !! | TGTACGTTTGGTTCCACTTT+TGG | + | chr5_3:5571105-5571124 | None:intergenic | 40.0% |
| ! | GTTTTCTTCTTTGACCCTGA+TGG | - | chr5_3:5571287-5571306 | Msa0793660:CDS | 40.0% |
| ! | TCAATCTGTAGGTAATGGCT+TGG | - | chr5_3:5571407-5571426 | Msa0793660:intron | 40.0% |
| CAATTACAGCAGCATCTAGA+GGG | + | chr5_3:5571560-5571579 | None:intergenic | 40.0% | |
| CTTGATAGAATTTGGCAAGG+CGG | + | chr5_3:5570301-5570320 | None:intergenic | 40.0% | |
| CCTCTTGATAGAATTTGGCA+AGG | + | chr5_3:5570304-5570323 | None:intergenic | 40.0% | |
| CCTTGCCAAATTCTATCAAG+AGG | - | chr5_3:5570301-5570320 | Msa0793660:three_prime_UTR | 40.0% | |
| GAAGTAGAAAGTCCCAAGTT+CGG | - | chr5_3:5570446-5570465 | Msa0793660:intron | 40.0% | |
| ACCTTAAACTCTCCGAACTT+GGG | + | chr5_3:5570461-5570480 | None:intergenic | 40.0% | |
| AACCTTAAACTCTCCGAACT+TGG | + | chr5_3:5570462-5570481 | None:intergenic | 40.0% | |
| ! | TCGGAGAGTTTAAGGTTGTA+TGG | - | chr5_3:5570465-5570484 | Msa0793660:intron | 40.0% |
| GGAGGAAAGATTGGAAATTG+GGG | + | chr5_3:5570631-5570650 | None:intergenic | 40.0% | |
| TGAGAGTTTGGAGGAAAGAT+TGG | + | chr5_3:5570640-5570659 | None:intergenic | 40.0% | |
| ATCTTTCCTCCAAACTCTCA+AGG | - | chr5_3:5570640-5570659 | Msa0793660:intron | 40.0% | |
| AGAAAACCTTGAGAGTTTGG+AGG | + | chr5_3:5570649-5570668 | None:intergenic | 40.0% | |
| !! | TGTACGTTTGGTTCCACTTT+TGG | + | chr5_3:5571105-5571124 | None:intergenic | 40.0% |
| ! | GTTTTCTTCTTTGACCCTGA+TGG | - | chr5_3:5571287-5571306 | Msa0793660:CDS | 40.0% |
| ! | TCAATCTGTAGGTAATGGCT+TGG | - | chr5_3:5571407-5571426 | Msa0793660:intron | 40.0% |
| CAATTACAGCAGCATCTAGA+GGG | + | chr5_3:5571560-5571579 | None:intergenic | 40.0% | |
| TTTGGCAAGGCGGTTTACAT+CGG | + | chr5_3:5570291-5570310 | None:intergenic | 45.0% | |
| TCCCAAGTTCGGAGAGTTTA+AGG | - | chr5_3:5570457-5570476 | Msa0793660:intron | 45.0% | |
| CTTCAGGGAGATTGTTGGAT+GGG | + | chr5_3:5570535-5570554 | None:intergenic | 45.0% | |
| AGATGGGAAGGGTCTTTAAC+AGG | + | chr5_3:5570578-5570597 | None:intergenic | 45.0% | |
| ! | ATGATGGCCTCTAGGAAGAT+GGG | + | chr5_3:5570594-5570613 | None:intergenic | 45.0% |
| AATGTATTTGGTCCGACCCT+AGG | + | chr5_3:5570693-5570712 | None:intergenic | 45.0% | |
| GATATTAGGGGTTCAGCTCA+GGG | + | chr5_3:5571389-5571408 | None:intergenic | 45.0% | |
| TGATATTAGGGGTTCAGCTC+AGG | + | chr5_3:5571390-5571409 | None:intergenic | 45.0% | |
| ! | ATCTGTAGGTAATGGCTTGG+AGG | - | chr5_3:5571410-5571429 | Msa0793660:intron | 45.0% |
| GCAATTACAGCAGCATCTAG+AGG | + | chr5_3:5571561-5571580 | None:intergenic | 45.0% | |
| TTTGGCAAGGCGGTTTACAT+CGG | + | chr5_3:5570291-5570310 | None:intergenic | 45.0% | |
| TCCCAAGTTCGGAGAGTTTA+AGG | - | chr5_3:5570457-5570476 | Msa0793660:intron | 45.0% | |
| CTTCAGGGAGATTGTTGGAT+GGG | + | chr5_3:5570535-5570554 | None:intergenic | 45.0% | |
| AGATGGGAAGGGTCTTTAAC+AGG | + | chr5_3:5570578-5570597 | None:intergenic | 45.0% | |
| ! | ATGATGGCCTCTAGGAAGAT+GGG | + | chr5_3:5570594-5570613 | None:intergenic | 45.0% |
| AATGTATTTGGTCCGACCCT+AGG | + | chr5_3:5570693-5570712 | None:intergenic | 45.0% | |
| GATATTAGGGGTTCAGCTCA+GGG | + | chr5_3:5571389-5571408 | None:intergenic | 45.0% | |
| TGATATTAGGGGTTCAGCTC+AGG | + | chr5_3:5571390-5571409 | None:intergenic | 45.0% | |
| ! | ATCTGTAGGTAATGGCTTGG+AGG | - | chr5_3:5571410-5571429 | Msa0793660:intron | 45.0% |
| GCAATTACAGCAGCATCTAG+AGG | + | chr5_3:5571561-5571580 | None:intergenic | 45.0% | |
| ! | CGGTGGACTCTCGAGATATA+TGG | + | chr5_3:5570271-5570290 | None:intergenic | 50.0% |
| CCTTCAGGGAGATTGTTGGA+TGG | + | chr5_3:5570536-5570555 | None:intergenic | 50.0% | |
| CCATCCAACAATCTCCCTGA+AGG | - | chr5_3:5570533-5570552 | Msa0793660:CDS | 50.0% | |
| TGGACCTTCAGGGAGATTGT+TGG | + | chr5_3:5570540-5570559 | None:intergenic | 50.0% | |
| ACAATCTCCCTGAAGGTCCA+TGG | - | chr5_3:5570540-5570559 | Msa0793660:CDS | 50.0% | |
| AGGGTCTTTAACAGGAGAGG+TGG | + | chr5_3:5570570-5570589 | None:intergenic | 50.0% | |
| GGAAGGGTCTTTAACAGGAG+AGG | + | chr5_3:5570573-5570592 | None:intergenic | 50.0% | |
| ! | GATGATGGCCTCTAGGAAGA+TGG | + | chr5_3:5570595-5570614 | None:intergenic | 50.0% |
| ! | AAGCAGAGATGATGGCCTCT+AGG | + | chr5_3:5570602-5570621 | None:intergenic | 50.0% |
| GGACAGAGAAGCAGAGATGA+TGG | + | chr5_3:5570610-5570629 | None:intergenic | 50.0% | |
| ATTTCCTATGGTCCGGTCCT+AGG | - | chr5_3:5570673-5570692 | Msa0793660:intron | 50.0% | |
| TTTCCTATGGTCCGGTCCTA+GGG | - | chr5_3:5570674-5570693 | Msa0793660:intron | 50.0% | |
| TTACAGCAGCATCTAGAGGG+AGG | + | chr5_3:5571557-5571576 | None:intergenic | 50.0% | |
| ! | CGGTGGACTCTCGAGATATA+TGG | + | chr5_3:5570271-5570290 | None:intergenic | 50.0% |
| CCTTCAGGGAGATTGTTGGA+TGG | + | chr5_3:5570536-5570555 | None:intergenic | 50.0% | |
| CCATCCAACAATCTCCCTGA+AGG | - | chr5_3:5570533-5570552 | Msa0793660:CDS | 50.0% | |
| TGGACCTTCAGGGAGATTGT+TGG | + | chr5_3:5570540-5570559 | None:intergenic | 50.0% | |
| ACAATCTCCCTGAAGGTCCA+TGG | - | chr5_3:5570540-5570559 | Msa0793660:CDS | 50.0% | |
| AGGGTCTTTAACAGGAGAGG+TGG | + | chr5_3:5570570-5570589 | None:intergenic | 50.0% | |
| GGAAGGGTCTTTAACAGGAG+AGG | + | chr5_3:5570573-5570592 | None:intergenic | 50.0% | |
| ! | GATGATGGCCTCTAGGAAGA+TGG | + | chr5_3:5570595-5570614 | None:intergenic | 50.0% |
| ! | AAGCAGAGATGATGGCCTCT+AGG | + | chr5_3:5570602-5570621 | None:intergenic | 50.0% |
| GGACAGAGAAGCAGAGATGA+TGG | + | chr5_3:5570610-5570629 | None:intergenic | 50.0% | |
| ATTTCCTATGGTCCGGTCCT+AGG | - | chr5_3:5570673-5570692 | Msa0793660:intron | 50.0% | |
| TTTCCTATGGTCCGGTCCTA+GGG | - | chr5_3:5570674-5570693 | Msa0793660:intron | 50.0% | |
| TTACAGCAGCATCTAGAGGG+AGG | + | chr5_3:5571557-5571576 | None:intergenic | 50.0% | |
| TGGCACTCCATGGACCTTCA+GGG | + | chr5_3:5570550-5570569 | None:intergenic | 55.0% | |
| GACCCTTCCCATCTTCCTAG+AGG | - | chr5_3:5570584-5570603 | Msa0793660:intron | 55.0% | |
| ! | GGCCTCTAGGAAGATGGGAA+GGG | + | chr5_3:5570589-5570608 | None:intergenic | 55.0% |
| ! | TGGCCTCTAGGAAGATGGGA+AGG | + | chr5_3:5570590-5570609 | None:intergenic | 55.0% |
| ATTTGGTCCGACCCTAGGAC+CGG | + | chr5_3:5570688-5570707 | None:intergenic | 55.0% | |
| ! | TGGCTTGGAGGTTGCAAGCA+AGG | - | chr5_3:5571422-5571441 | Msa0793660:intron | 55.0% |
| TGGCACTCCATGGACCTTCA+GGG | + | chr5_3:5570550-5570569 | None:intergenic | 55.0% | |
| GACCCTTCCCATCTTCCTAG+AGG | - | chr5_3:5570584-5570603 | Msa0793660:intron | 55.0% | |
| ! | GGCCTCTAGGAAGATGGGAA+GGG | + | chr5_3:5570589-5570608 | None:intergenic | 55.0% |
| ! | TGGCCTCTAGGAAGATGGGA+AGG | + | chr5_3:5570590-5570609 | None:intergenic | 55.0% |
| ATTTGGTCCGACCCTAGGAC+CGG | + | chr5_3:5570688-5570707 | None:intergenic | 55.0% | |
| ! | TGGCTTGGAGGTTGCAAGCA+AGG | - | chr5_3:5571422-5571441 | Msa0793660:intron | 55.0% |
| GGCAAGGCGGTTTACATCGG+TGG | + | chr5_3:5570288-5570307 | None:intergenic | 60.0% | |
| !! | TGGATGGGTTGCGCTCGATG+AGG | + | chr5_3:5570520-5570539 | None:intergenic | 60.0% |
| GTGGCACTCCATGGACCTTC+AGG | + | chr5_3:5570551-5570570 | None:intergenic | 60.0% | |
| ACAGGAGAGGTGGCACTCCA+TGG | + | chr5_3:5570560-5570579 | None:intergenic | 60.0% | |
| CTATGGTCCGGTCCTAGGGT+CGG | - | chr5_3:5570678-5570697 | Msa0793660:intron | 60.0% | |
| GGCAAGGCGGTTTACATCGG+TGG | + | chr5_3:5570288-5570307 | None:intergenic | 60.0% | |
| !! | TGGATGGGTTGCGCTCGATG+AGG | + | chr5_3:5570520-5570539 | None:intergenic | 60.0% |
| GTGGCACTCCATGGACCTTC+AGG | + | chr5_3:5570551-5570570 | None:intergenic | 60.0% | |
| ACAGGAGAGGTGGCACTCCA+TGG | + | chr5_3:5570560-5570579 | None:intergenic | 60.0% | |
| CTATGGTCCGGTCCTAGGGT+CGG | - | chr5_3:5570678-5570697 | Msa0793660:intron | 60.0% | |
| CGACCCTAGGACCGGACCAT+AGG | + | chr5_3:5570680-5570699 | None:intergenic | 65.0% | |
| CGACCCTAGGACCGGACCAT+AGG | + | chr5_3:5570680-5570699 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5570210 | 5571612 | 5570210 | ID=Msa0793660;Name=Msa0793660 |
| chr5_3 | mRNA | 5570210 | 5571612 | 5570210 | ID=Msa0793660-mRNA-1;Parent=Msa0793660;Name=Msa0793660-mRNA-1;_AED=0.35;_eAED=0.35;_QI=38|1|1|1|1|1|4|157|139 |
| chr5_3 | exon | 5570210 | 5570404 | 5570210 | ID=Msa0793660-mRNA-1:exon:2200;Parent=Msa0793660-mRNA-1 |
| chr5_3 | exon | 5570514 | 5570589 | 5570514 | ID=Msa0793660-mRNA-1:exon:2199;Parent=Msa0793660-mRNA-1 |
| chr5_3 | exon | 5571161 | 5571391 | 5571161 | ID=Msa0793660-mRNA-1:exon:2198;Parent=Msa0793660-mRNA-1 |
| chr5_3 | exon | 5571500 | 5571612 | 5571500 | ID=Msa0793660-mRNA-1:exon:2197;Parent=Msa0793660-mRNA-1 |
| chr5_3 | five_prime_UTR | 5571575 | 5571612 | 5571575 | ID=Msa0793660-mRNA-1:five_prime_utr;Parent=Msa0793660-mRNA-1 |
| chr5_3 | CDS | 5571500 | 5571574 | 5571500 | ID=Msa0793660-mRNA-1:cds;Parent=Msa0793660-mRNA-1 |
| chr5_3 | CDS | 5571161 | 5571391 | 5571161 | ID=Msa0793660-mRNA-1:cds;Parent=Msa0793660-mRNA-1 |
| chr5_3 | CDS | 5570514 | 5570589 | 5570514 | ID=Msa0793660-mRNA-1:cds;Parent=Msa0793660-mRNA-1 |
| chr5_3 | CDS | 5570367 | 5570404 | 5570367 | ID=Msa0793660-mRNA-1:cds;Parent=Msa0793660-mRNA-1 |
| chr5_3 | three_prime_UTR | 5570210 | 5570366 | 5570210 | ID=Msa0793660-mRNA-1:three_prime_utr;Parent=Msa0793660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
