AlfalfaGEDB | Msa0793660

M. sativa cultivar zhongmu-4 / Msa0793660

KEGG: -
GO: -
PFAM: PF13669.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793660	XP_003610727.1	95.000	140	6	1	1	139	1	140	1.62e-91	271

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793660	G7K3N2	95.000	140	6	1	1	139	1	140	7.73e-92	271

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0559650	Msa0793660	0.830728	2.494285e-55	-8.615850e-47
Msa0654410	Msa0793660	0.816390	5.668284e-52	-8.615850e-47
Msa0793660	Msa1071180	0.946759	2.497402e-105	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793660	MtrunA17_Chr5g0394511	95.000	140	6	1	1	139	1	140	1.49e-95	271
Msa0793660	MtrunA17_Chr5g0394521	65.278	144	39	5	1	139	1	138	3.64e-58	177
Msa0793660	MtrunA17_Chr4g0020201	27.536	138	89	3	4	138	37	166	6.77e-12	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793660	AT2G32090.1	72.932	133	36	0	4	136	2	134	1.52e-75	221
Msa0793660	AT2G32090.2	75.676	111	27	0	26	136	2	112	4.74e-63	188
Msa0793660	AT2G28420.1	28.777	139	84	4	4	138	19	146	1.86e-14	67.0

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Find 50 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAACCTTGAGAGTT+TGG	0.264541	5_3:+5571151	None:intergenic
AACCTTAAACTCTCCGAACT+TGG	0.393413	5_3:+5571341	None:intergenic
AAGCAGAGATGATGGCCTCT+AGG	0.507231	5_3:+5571201	None:intergenic
ACAATCTCCCTGAAGGTCCA+TGG	0.539494	5_3:-5571260	Msa0793660:CDS
ACAGGAGAGGTGGCACTCCA+TGG	0.546931	5_3:+5571243	None:intergenic
ACATGCATATCAAAGTAACT+AGG	0.606119	5_3:+5570349	None:intergenic
ACCTTAAACTCTCCGAACTT+GGG	0.532859	5_3:+5571342	None:intergenic
ACTACATAGTCTTACCATCA+GGG	0.643829	5_3:+5570499	None:intergenic
AGAAAACCTTGAGAGTTTGG+AGG	0.543197	5_3:+5571154	None:intergenic
AGAGAAAAGTGAAGCTGAAA+TGG	0.368788	5_3:-5571571	Msa0793660:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTACCTCTTGATAGAATT+TGG	+	chr5_3:5570309-5570328	None:intergenic	30.0%
AAAAGAAAACCTTGAGAGTT+TGG	+	chr5_3:5570652-5570671	None:intergenic	30.0%
GAAATTAACTCTAAACAACC+TGG	-	chr5_3:5571062-5571081	Msa0793660:intron	30.0%
TACCTACAGATTGATATTAG+GGG	+	chr5_3:5571401-5571420	None:intergenic	30.0%
ACATGCATATCAAAGTAACT+AGG	+	chr5_3:5571454-5571473	None:intergenic	30.0%
AGTTACCTCTTGATAGAATT+TGG	+	chr5_3:5570309-5570328	None:intergenic	30.0%
AAAAGAAAACCTTGAGAGTT+TGG	+	chr5_3:5570652-5570671	None:intergenic	30.0%
GAAATTAACTCTAAACAACC+TGG	-	chr5_3:5571062-5571081	Msa0793660:intron	30.0%
TACCTACAGATTGATATTAG+GGG	+	chr5_3:5571401-5571420	None:intergenic	30.0%
ACATGCATATCAAAGTAACT+AGG	+	chr5_3:5571454-5571473	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	5570210	5571612	5570210	ID=Msa0793660;Name=Msa0793660
chr5_3	mRNA	5570210	5571612	5570210	ID=Msa0793660-mRNA-1;Parent=Msa0793660;Name=Msa0793660-mRNA-1;_AED=0.35;_eAED=0.35;_QI=38\|1\|1\|1\|1\|1\|4\|157\|139
chr5_3	exon	5570210	5570404	5570210	ID=Msa0793660-mRNA-1:exon:2200;Parent=Msa0793660-mRNA-1
chr5_3	exon	5570514	5570589	5570514	ID=Msa0793660-mRNA-1:exon:2199;Parent=Msa0793660-mRNA-1
chr5_3	exon	5571161	5571391	5571161	ID=Msa0793660-mRNA-1:exon:2198;Parent=Msa0793660-mRNA-1
chr5_3	exon	5571500	5571612	5571500	ID=Msa0793660-mRNA-1:exon:2197;Parent=Msa0793660-mRNA-1
chr5_3	five_prime_UTR	5571575	5571612	5571575	ID=Msa0793660-mRNA-1:five_prime_utr;Parent=Msa0793660-mRNA-1
chr5_3	CDS	5571500	5571574	5571500	ID=Msa0793660-mRNA-1:cds;Parent=Msa0793660-mRNA-1
chr5_3	CDS	5571161	5571391	5571161	ID=Msa0793660-mRNA-1:cds;Parent=Msa0793660-mRNA-1
chr5_3	CDS	5570514	5570589	5570514	ID=Msa0793660-mRNA-1:cds;Parent=Msa0793660-mRNA-1
chr5_3	CDS	5570367	5570404	5570367	ID=Msa0793660-mRNA-1:cds;Parent=Msa0793660-mRNA-1
chr5_3	three_prime_UTR	5570210	5570366	5570210	ID=Msa0793660-mRNA-1:three_prime_utr;Parent=Msa0793660-mRNA-1

Gene Sequence

>Msa0793660

ATGGCAGCAGTGACTCTGAACCATATATCTCGAGAGTCCACCGATGTAAACCGCCTTGCCAAATTCTATCAAGAGATATTTGGATTTGAGGAAGTAGAAAGTCCCAAGTTCGGAGAGTTTAAGGTTGTATGGTTACGTCTTCCATCTTCATTGTATCTTCACCTCATCGAGCGCAACCCATCCAACAATCTCCCTGAAGGTCCATGGAGTGCCACCTCTCCTGTTAAAGACCCTTCCCATCTTCCTAGAGGCCATCATCTCTGCTTCTCTGTCCCCAATTTCCAATCTTTCCTCCAAACTCTCAAGGATAAGGGCATTGAGACTTTTGAGAAATCTCTGCCTAATGGCAAAATCAAACAAGTTTTCTTCTTTGACCCTGATGGTAATGGCTTGGAGGTTGCAAGCAAGGAAGACTCCTAG

Protein sequence

>Msa0793660

MAAVTLNHISRESTDVNRLAKFYQEIFGFEEVESPKFGEFKVVWLRLPSSLYLHLIERNPSNNLPEGPWSATSPVKDPSHLPRGHHLCFSVPNFQSFLQTLKDKGIETFEKSLPNGKIKQVFFFDPDGNGLEVASKEDS*