AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1071180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1071180 MtrunA17_Chr5g0394511 95.000 140 6 1 1 139 1 140 1.49e-95 271
Msa1071180 MtrunA17_Chr5g0394521 65.278 144 39 5 1 139 1 138 3.64e-58 177
Msa1071180 MtrunA17_Chr4g0020201 27.536 138 89 3 4 138 37 166 6.77e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1071180 AT2G32090.1 72.932 133 36 0 4 136 2 134 1.52e-75 221
Msa1071180 AT2G32090.2 75.676 111 27 0 26 136 2 112 4.74e-63 188
Msa1071180 AT2G28420.1 28.777 139 84 4 4 138 19 146 1.86e-14 67.0

Find 50 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCAAGTTCGGAGAGTTTA+AGG 0.169316 7_2:+67640153 Msa1071180:CDS
AGTTACCTCTTGATAGAATT+TGG 0.196394 7_2:-67640002 None:intergenic
TTGGAGGAAAGATTGGAAAT+TGG 0.244848 7_2:-67640326 None:intergenic
AAAAGAAAACCTTGAGAGTT+TGG 0.264541 7_2:-67640345 None:intergenic
TGGAGGAAAGATTGGAAATT+GGG 0.290951 7_2:-67640325 None:intergenic
GTGGCACTCCATGGACCTTC+AGG 0.291137 7_2:-67640244 None:intergenic
TGAGAGTTTGGAGGAAAGAT+TGG 0.336659 7_2:-67640333 None:intergenic
AGAGAAAAGTGAAGCTGAAA+TGG 0.368788 7_2:+67639925 Msa1071180:exon
CGGTGGACTCTCGAGATATA+TGG 0.373213 7_2:-67639964 None:intergenic
TTTGAGAAATCTCTGCCTAA+TGG 0.386060 7_2:+67640947 Msa1071180:CDS
AACCTTAAACTCTCCGAACT+TGG 0.393413 7_2:-67640155 None:intergenic
GATGTTCTTAAATGACAATA+AGG 0.399537 7_2:-67641198 None:intergenic
TCGGAGAGTTTAAGGTTGTA+TGG 0.409502 7_2:+67640161 Msa1071180:CDS
CTTCAGGGAGATTGTTGGAT+GGG 0.413649 7_2:-67640228 None:intergenic
AGATGGGAAGGGTCTTTAAC+AGG 0.425313 7_2:-67640271 None:intergenic
GAAGTAGAAAGTCCCAAGTT+CGG 0.482224 7_2:+67640142 Msa1071180:CDS
CCTTCAGGGAGATTGTTGGA+TGG 0.483246 7_2:-67640229 None:intergenic
GATGATGGCCTCTAGGAAGA+TGG 0.486052 7_2:-67640288 None:intergenic
ATCTTTCCTCCAAACTCTCA+AGG 0.486071 7_2:+67640336 Msa1071180:CDS
TGGACCTTCAGGGAGATTGT+TGG 0.488258 7_2:-67640233 None:intergenic
ATCTGTAGGTAATGGCTTGG+AGG 0.496826 7_2:+67641106 Msa1071180:intron
AGGTGAAGATACAATGAAGA+TGG 0.500818 7_2:-67640193 None:intergenic
AAGCAGAGATGATGGCCTCT+AGG 0.507231 7_2:-67640295 None:intergenic
GGACAGAGAAGCAGAGATGA+TGG 0.508377 7_2:-67640303 None:intergenic
TCAATCTGTAGGTAATGGCT+TGG 0.513155 7_2:+67641103 Msa1071180:intron
TGGCACTCCATGGACCTTCA+GGG 0.526229 7_2:-67640243 None:intergenic
GGCAAGGCGGTTTACATCGG+TGG 0.530632 7_2:-67639981 None:intergenic
ACCTTAAACTCTCCGAACTT+GGG 0.532859 7_2:-67640154 None:intergenic
ATGATGGCCTCTAGGAAGAT+GGG 0.534418 7_2:-67640287 None:intergenic
TGGCTTGGAGGTTGCAAGCA+AGG 0.537704 7_2:+67641118 Msa1071180:CDS
GGAGGAAAGATTGGAAATTG+GGG 0.538696 7_2:-67640324 None:intergenic
ACAATCTCCCTGAAGGTCCA+TGG 0.539494 7_2:+67640236 Msa1071180:CDS
AGAAAACCTTGAGAGTTTGG+AGG 0.543197 7_2:-67640342 None:intergenic
ACAGGAGAGGTGGCACTCCA+TGG 0.546931 7_2:-67640253 None:intergenic
TGGCCTCTAGGAAGATGGGA+AGG 0.592110 7_2:-67640283 None:intergenic
TTTGGCAAGGCGGTTTACAT+CGG 0.596297 7_2:-67639984 None:intergenic
GCAATTACAGCAGCATCTAG+AGG 0.599720 7_2:-67641254 None:intergenic
CCTTGCCAAATTCTATCAAG+AGG 0.600369 7_2:+67639997 Msa1071180:CDS
CCTCTTGATAGAATTTGGCA+AGG 0.604080 7_2:-67639997 None:intergenic
ACATGCATATCAAAGTAACT+AGG 0.606119 7_2:-67641147 None:intergenic
CAATTACAGCAGCATCTAGA+GGG 0.610460 7_2:-67641253 None:intergenic
CCATCCAACAATCTCCCTGA+AGG 0.629938 7_2:+67640229 Msa1071180:CDS
GGCCTCTAGGAAGATGGGAA+GGG 0.632526 7_2:-67640282 None:intergenic
ACTACATAGTCTTACCATCA+GGG 0.643829 7_2:-67640997 None:intergenic
AGGGTCTTTAACAGGAGAGG+TGG 0.645849 7_2:-67640263 None:intergenic
CTTGATAGAATTTGGCAAGG+CGG 0.647178 7_2:-67639994 None:intergenic
GGAAGGGTCTTTAACAGGAG+AGG 0.653406 7_2:-67640266 None:intergenic
GACCCTTCCCATCTTCCTAG+AGG 0.663206 7_2:+67640280 Msa1071180:CDS
TTACAGCAGCATCTAGAGGG+AGG 0.687200 7_2:-67641250 None:intergenic
TGGATGGGTTGCGCTCGATG+AGG 0.700869 7_2:-67640213 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAAAGTTAATGTATT+TGG - chr7_2:67640401-67640420 None:intergenic 10.0%
!! TTAATAAAAGTTAATGTATT+TGG - chr7_2:67640401-67640420 None:intergenic 10.0%
!! ATACTATAATACTATATGTT+TGG + chr7_2:67640079-67640098 Msa1071180:intron 15.0%
!!! TAATATGATTTTCAGATATT+TGG + chr7_2:67640112-67640131 Msa1071180:intron 15.0%
!! TTGATTATGTAAAATTGATT+TGG + chr7_2:67640576-67640595 Msa1071180:intron 15.0%
!! ATGATTAGTGATTATTATTA+TGG + chr7_2:67640614-67640633 Msa1071180:intron 15.0%
!!! TACACTAATTTTTTTGTATT+AGG + chr7_2:67640817-67640836 Msa1071180:intron 15.0%
!!! AAGCTTTATTTTATGAATAA+AGG - chr7_2:67641281-67641300 None:intergenic 15.0%
!! ATACTATAATACTATATGTT+TGG + chr7_2:67640079-67640098 Msa1071180:intron 15.0%
!!! TAATATGATTTTCAGATATT+TGG + chr7_2:67640112-67640131 Msa1071180:intron 15.0%
!! TTGATTATGTAAAATTGATT+TGG + chr7_2:67640576-67640595 Msa1071180:intron 15.0%
!! ATGATTAGTGATTATTATTA+TGG + chr7_2:67640614-67640633 Msa1071180:intron 15.0%
!!! TACACTAATTTTTTTGTATT+AGG + chr7_2:67640817-67640836 Msa1071180:intron 15.0%
!!! AAGCTTTATTTTATGAATAA+AGG - chr7_2:67641281-67641300 None:intergenic 15.0%
!!! TTATATTTATTTAAGACACG+AGG + chr7_2:67640433-67640452 Msa1071180:intron 20.0%
!!! TATATTTATTTAAGACACGA+GGG + chr7_2:67640434-67640453 Msa1071180:intron 20.0%
!!! CTCACTTAATTATGAAATTT+TGG - chr7_2:67640517-67640536 None:intergenic 20.0%
!! TTCATAATTAAGTGAGTATT+TGG + chr7_2:67640521-67640540 Msa1071180:intron 20.0%
!!! AAAGCTAAAAAATTAGTTTG+AGG + chr7_2:67640673-67640692 Msa1071180:intron 20.0%
!!! TTAAGTTAGAATAGTTTTAC+TGG + chr7_2:67640717-67640736 Msa1071180:intron 20.0%
!!! AATATGAAGTTTTGTATTTG+AGG + chr7_2:67640862-67640881 Msa1071180:intron 20.0%
!!! ATATGAAGTTTTGTATTTGA+GGG + chr7_2:67640863-67640882 Msa1071180:intron 20.0%
!!! ATTGTTATTATTCTCTGAAT+TGG + chr7_2:67641048-67641067 Msa1071180:intron 20.0%
!!! TTATATTTATTTAAGACACG+AGG + chr7_2:67640433-67640452 Msa1071180:intron 20.0%
!!! TATATTTATTTAAGACACGA+GGG + chr7_2:67640434-67640453 Msa1071180:intron 20.0%
!!! CTCACTTAATTATGAAATTT+TGG - chr7_2:67640517-67640536 None:intergenic 20.0%
!! TTCATAATTAAGTGAGTATT+TGG + chr7_2:67640521-67640540 Msa1071180:intron 20.0%
!!! AAAGCTAAAAAATTAGTTTG+AGG + chr7_2:67640673-67640692 Msa1071180:intron 20.0%
!!! TTAAGTTAGAATAGTTTTAC+TGG + chr7_2:67640717-67640736 Msa1071180:intron 20.0%
!!! AATATGAAGTTTTGTATTTG+AGG + chr7_2:67640862-67640881 Msa1071180:intron 20.0%
!!! ATATGAAGTTTTGTATTTGA+GGG + chr7_2:67640863-67640882 Msa1071180:intron 20.0%
!!! ATTGTTATTATTCTCTGAAT+TGG + chr7_2:67641048-67641067 Msa1071180:intron 20.0%
!! TTTTCAGATATTTGGATTTG+AGG + chr7_2:67640120-67640139 Msa1071180:intron 25.0%
!!! AAGGTGACAAAATTTGTTTT+TGG + chr7_2:67640548-67640567 Msa1071180:intron 25.0%
! AAACTATTCTAACTTAAAGC+CGG - chr7_2:67640714-67640733 None:intergenic 25.0%
!!! AATTTTAACTACTCCAAAAG+TGG + chr7_2:67640785-67640804 Msa1071180:intron 25.0%
! CAAAAAAATTAGTGTACGTT+TGG - chr7_2:67640813-67640832 None:intergenic 25.0%
!!! TATGAAGTTTTGTATTTGAG+GGG + chr7_2:67640864-67640883 Msa1071180:intron 25.0%
!!! TTTGTTTGTTTGTTTTATGC+AGG + chr7_2:67640907-67640926 Msa1071180:intron 25.0%
! TTACCTACAGATTGATATTA+GGG - chr7_2:67641098-67641117 None:intergenic 25.0%
! ATTACCTACAGATTGATATT+AGG - chr7_2:67641099-67641118 None:intergenic 25.0%
! TAATATCAATCTGTAGGTAA+TGG + chr7_2:67641098-67641117 Msa1071180:intron 25.0%
! GATGTTCTTAAATGACAATA+AGG - chr7_2:67641201-67641220 None:intergenic 25.0%
!! TTTTCAGATATTTGGATTTG+AGG + chr7_2:67640120-67640139 Msa1071180:intron 25.0%
!!! AAGGTGACAAAATTTGTTTT+TGG + chr7_2:67640548-67640567 Msa1071180:intron 25.0%
! AAACTATTCTAACTTAAAGC+CGG - chr7_2:67640714-67640733 None:intergenic 25.0%
!!! AATTTTAACTACTCCAAAAG+TGG + chr7_2:67640785-67640804 Msa1071180:intron 25.0%
! CAAAAAAATTAGTGTACGTT+TGG - chr7_2:67640813-67640832 None:intergenic 25.0%
!!! TATGAAGTTTTGTATTTGAG+GGG + chr7_2:67640864-67640883 Msa1071180:intron 25.0%
!!! TTTGTTTGTTTGTTTTATGC+AGG + chr7_2:67640907-67640926 Msa1071180:intron 25.0%
! TTACCTACAGATTGATATTA+GGG - chr7_2:67641098-67641117 None:intergenic 25.0%
! ATTACCTACAGATTGATATT+AGG - chr7_2:67641099-67641118 None:intergenic 25.0%
! TAATATCAATCTGTAGGTAA+TGG + chr7_2:67641098-67641117 Msa1071180:intron 25.0%
! GATGTTCTTAAATGACAATA+AGG - chr7_2:67641201-67641220 None:intergenic 25.0%
AGTTACCTCTTGATAGAATT+TGG - chr7_2:67640005-67640024 None:intergenic 30.0%
AAAAGAAAACCTTGAGAGTT+TGG - chr7_2:67640348-67640367 None:intergenic 30.0%
! GGTTTTCTTTTCATTTCCTA+TGG + chr7_2:67640357-67640376 Msa1071180:intron 30.0%
!! TAAGTGAGTATTTGGTTCTA+AGG + chr7_2:67640529-67640548 Msa1071180:intron 30.0%
GAAATTAACTCTAAACAACC+TGG + chr7_2:67640758-67640777 Msa1071180:intron 30.0%
! GAGTAGTTAAAATTGATTCC+AGG - chr7_2:67640779-67640798 None:intergenic 30.0%
!!! TGTTTGTTTTATGCAGGATA+AGG + chr7_2:67640913-67640932 Msa1071180:intron 30.0%
!!! GTTTGTTTTATGCAGGATAA+GGG + chr7_2:67640914-67640933 Msa1071180:intron 30.0%
!! ACTTGTTTGATTTTGCCATT+AGG - chr7_2:67640965-67640984 None:intergenic 30.0%
TACCTACAGATTGATATTAG+GGG - chr7_2:67641097-67641116 None:intergenic 30.0%
ACATGCATATCAAAGTAACT+AGG - chr7_2:67641150-67641169 None:intergenic 30.0%
AGTTACCTCTTGATAGAATT+TGG - chr7_2:67640005-67640024 None:intergenic 30.0%
AAAAGAAAACCTTGAGAGTT+TGG - chr7_2:67640348-67640367 None:intergenic 30.0%
! GGTTTTCTTTTCATTTCCTA+TGG + chr7_2:67640357-67640376 Msa1071180:intron 30.0%
!! TAAGTGAGTATTTGGTTCTA+AGG + chr7_2:67640529-67640548 Msa1071180:intron 30.0%
GAAATTAACTCTAAACAACC+TGG + chr7_2:67640758-67640777 Msa1071180:intron 30.0%
! GAGTAGTTAAAATTGATTCC+AGG - chr7_2:67640779-67640798 None:intergenic 30.0%
!!! TGTTTGTTTTATGCAGGATA+AGG + chr7_2:67640913-67640932 Msa1071180:intron 30.0%
!!! GTTTGTTTTATGCAGGATAA+GGG + chr7_2:67640914-67640933 Msa1071180:intron 30.0%
!! ACTTGTTTGATTTTGCCATT+AGG - chr7_2:67640965-67640984 None:intergenic 30.0%
TACCTACAGATTGATATTAG+GGG - chr7_2:67641097-67641116 None:intergenic 30.0%
ACATGCATATCAAAGTAACT+AGG - chr7_2:67641150-67641169 None:intergenic 30.0%
AGAGAAAAGTGAAGCTGAAA+TGG + chr7_2:67639925-67639944 Msa1071180:exon 35.0%
AGGTGAAGATACAATGAAGA+TGG - chr7_2:67640196-67640215 None:intergenic 35.0%
TGGAGGAAAGATTGGAAATT+GGG - chr7_2:67640328-67640347 None:intergenic 35.0%
TTGGAGGAAAGATTGGAAAT+TGG - chr7_2:67640329-67640348 None:intergenic 35.0%
! TCTTTTCATTTCCTATGGTC+CGG + chr7_2:67640362-67640381 Msa1071180:intron 35.0%
TGGTCATATGCATGTAAAAC+TGG + chr7_2:67640634-67640653 Msa1071180:intron 35.0%
GGTCATATGCATGTAAAACT+GGG + chr7_2:67640635-67640654 Msa1071180:intron 35.0%
GAGGTAAAAGCTTCAAAATC+CGG + chr7_2:67640692-67640711 Msa1071180:intron 35.0%
TTTGAGAAATCTCTGCCTAA+TGG + chr7_2:67640947-67640966 Msa1071180:CDS 35.0%
! ACTACATAGTCTTACCATCA+GGG - chr7_2:67641000-67641019 None:intergenic 35.0%
! TACTACATAGTCTTACCATC+AGG - chr7_2:67641001-67641020 None:intergenic 35.0%
AACCCCTAATATCAATCTGT+AGG + chr7_2:67641092-67641111 Msa1071180:intron 35.0%
AGAGAAAAGTGAAGCTGAAA+TGG + chr7_2:67639925-67639944 Msa1071180:exon 35.0%
AGGTGAAGATACAATGAAGA+TGG - chr7_2:67640196-67640215 None:intergenic 35.0%
TGGAGGAAAGATTGGAAATT+GGG - chr7_2:67640328-67640347 None:intergenic 35.0%
TTGGAGGAAAGATTGGAAAT+TGG - chr7_2:67640329-67640348 None:intergenic 35.0%
! TCTTTTCATTTCCTATGGTC+CGG + chr7_2:67640362-67640381 Msa1071180:intron 35.0%
TGGTCATATGCATGTAAAAC+TGG + chr7_2:67640634-67640653 Msa1071180:intron 35.0%
GGTCATATGCATGTAAAACT+GGG + chr7_2:67640635-67640654 Msa1071180:intron 35.0%
GAGGTAAAAGCTTCAAAATC+CGG + chr7_2:67640692-67640711 Msa1071180:intron 35.0%
TTTGAGAAATCTCTGCCTAA+TGG + chr7_2:67640947-67640966 Msa1071180:CDS 35.0%
! ACTACATAGTCTTACCATCA+GGG - chr7_2:67641000-67641019 None:intergenic 35.0%
! TACTACATAGTCTTACCATC+AGG - chr7_2:67641001-67641020 None:intergenic 35.0%
AACCCCTAATATCAATCTGT+AGG + chr7_2:67641092-67641111 Msa1071180:intron 35.0%
CTTGATAGAATTTGGCAAGG+CGG - chr7_2:67639997-67640016 None:intergenic 40.0%
CCTCTTGATAGAATTTGGCA+AGG - chr7_2:67640000-67640019 None:intergenic 40.0%
CCTTGCCAAATTCTATCAAG+AGG + chr7_2:67639997-67640016 Msa1071180:CDS 40.0%
GAAGTAGAAAGTCCCAAGTT+CGG + chr7_2:67640142-67640161 Msa1071180:CDS 40.0%
ACCTTAAACTCTCCGAACTT+GGG - chr7_2:67640157-67640176 None:intergenic 40.0%
AACCTTAAACTCTCCGAACT+TGG - chr7_2:67640158-67640177 None:intergenic 40.0%
! TCGGAGAGTTTAAGGTTGTA+TGG + chr7_2:67640161-67640180 Msa1071180:CDS 40.0%
GGAGGAAAGATTGGAAATTG+GGG - chr7_2:67640327-67640346 None:intergenic 40.0%
TGAGAGTTTGGAGGAAAGAT+TGG - chr7_2:67640336-67640355 None:intergenic 40.0%
ATCTTTCCTCCAAACTCTCA+AGG + chr7_2:67640336-67640355 Msa1071180:CDS 40.0%
AGAAAACCTTGAGAGTTTGG+AGG - chr7_2:67640345-67640364 None:intergenic 40.0%
!! TGTACGTTTGGTTCCACTTT+TGG - chr7_2:67640801-67640820 None:intergenic 40.0%
! GTTTTCTTCTTTGACCCTGA+TGG + chr7_2:67640983-67641002 Msa1071180:CDS 40.0%
! TCAATCTGTAGGTAATGGCT+TGG + chr7_2:67641103-67641122 Msa1071180:intron 40.0%
CAATTACAGCAGCATCTAGA+GGG - chr7_2:67641256-67641275 None:intergenic 40.0%
CTTGATAGAATTTGGCAAGG+CGG - chr7_2:67639997-67640016 None:intergenic 40.0%
CCTCTTGATAGAATTTGGCA+AGG - chr7_2:67640000-67640019 None:intergenic 40.0%
CCTTGCCAAATTCTATCAAG+AGG + chr7_2:67639997-67640016 Msa1071180:CDS 40.0%
GAAGTAGAAAGTCCCAAGTT+CGG + chr7_2:67640142-67640161 Msa1071180:CDS 40.0%
ACCTTAAACTCTCCGAACTT+GGG - chr7_2:67640157-67640176 None:intergenic 40.0%
AACCTTAAACTCTCCGAACT+TGG - chr7_2:67640158-67640177 None:intergenic 40.0%
! TCGGAGAGTTTAAGGTTGTA+TGG + chr7_2:67640161-67640180 Msa1071180:CDS 40.0%
GGAGGAAAGATTGGAAATTG+GGG - chr7_2:67640327-67640346 None:intergenic 40.0%
TGAGAGTTTGGAGGAAAGAT+TGG - chr7_2:67640336-67640355 None:intergenic 40.0%
ATCTTTCCTCCAAACTCTCA+AGG + chr7_2:67640336-67640355 Msa1071180:CDS 40.0%
AGAAAACCTTGAGAGTTTGG+AGG - chr7_2:67640345-67640364 None:intergenic 40.0%
!! TGTACGTTTGGTTCCACTTT+TGG - chr7_2:67640801-67640820 None:intergenic 40.0%
! GTTTTCTTCTTTGACCCTGA+TGG + chr7_2:67640983-67641002 Msa1071180:CDS 40.0%
! TCAATCTGTAGGTAATGGCT+TGG + chr7_2:67641103-67641122 Msa1071180:intron 40.0%
CAATTACAGCAGCATCTAGA+GGG - chr7_2:67641256-67641275 None:intergenic 40.0%
TTTGGCAAGGCGGTTTACAT+CGG - chr7_2:67639987-67640006 None:intergenic 45.0%
TCCCAAGTTCGGAGAGTTTA+AGG + chr7_2:67640153-67640172 Msa1071180:CDS 45.0%
CTTCAGGGAGATTGTTGGAT+GGG - chr7_2:67640231-67640250 None:intergenic 45.0%
AGATGGGAAGGGTCTTTAAC+AGG - chr7_2:67640274-67640293 None:intergenic 45.0%
! ATGATGGCCTCTAGGAAGAT+GGG - chr7_2:67640290-67640309 None:intergenic 45.0%
AATGTATTTGGTCCGACCCT+AGG - chr7_2:67640389-67640408 None:intergenic 45.0%
GATATTAGGGGTTCAGCTCA+GGG - chr7_2:67641085-67641104 None:intergenic 45.0%
TGATATTAGGGGTTCAGCTC+AGG - chr7_2:67641086-67641105 None:intergenic 45.0%
! ATCTGTAGGTAATGGCTTGG+AGG + chr7_2:67641106-67641125 Msa1071180:intron 45.0%
GCAATTACAGCAGCATCTAG+AGG - chr7_2:67641257-67641276 None:intergenic 45.0%
TTTGGCAAGGCGGTTTACAT+CGG - chr7_2:67639987-67640006 None:intergenic 45.0%
TCCCAAGTTCGGAGAGTTTA+AGG + chr7_2:67640153-67640172 Msa1071180:CDS 45.0%
CTTCAGGGAGATTGTTGGAT+GGG - chr7_2:67640231-67640250 None:intergenic 45.0%
AGATGGGAAGGGTCTTTAAC+AGG - chr7_2:67640274-67640293 None:intergenic 45.0%
! ATGATGGCCTCTAGGAAGAT+GGG - chr7_2:67640290-67640309 None:intergenic 45.0%
AATGTATTTGGTCCGACCCT+AGG - chr7_2:67640389-67640408 None:intergenic 45.0%
GATATTAGGGGTTCAGCTCA+GGG - chr7_2:67641085-67641104 None:intergenic 45.0%
TGATATTAGGGGTTCAGCTC+AGG - chr7_2:67641086-67641105 None:intergenic 45.0%
! ATCTGTAGGTAATGGCTTGG+AGG + chr7_2:67641106-67641125 Msa1071180:intron 45.0%
GCAATTACAGCAGCATCTAG+AGG - chr7_2:67641257-67641276 None:intergenic 45.0%
! CGGTGGACTCTCGAGATATA+TGG - chr7_2:67639967-67639986 None:intergenic 50.0%
CCTTCAGGGAGATTGTTGGA+TGG - chr7_2:67640232-67640251 None:intergenic 50.0%
CCATCCAACAATCTCCCTGA+AGG + chr7_2:67640229-67640248 Msa1071180:CDS 50.0%
TGGACCTTCAGGGAGATTGT+TGG - chr7_2:67640236-67640255 None:intergenic 50.0%
ACAATCTCCCTGAAGGTCCA+TGG + chr7_2:67640236-67640255 Msa1071180:CDS 50.0%
AGGGTCTTTAACAGGAGAGG+TGG - chr7_2:67640266-67640285 None:intergenic 50.0%
GGAAGGGTCTTTAACAGGAG+AGG - chr7_2:67640269-67640288 None:intergenic 50.0%
! GATGATGGCCTCTAGGAAGA+TGG - chr7_2:67640291-67640310 None:intergenic 50.0%
! AAGCAGAGATGATGGCCTCT+AGG - chr7_2:67640298-67640317 None:intergenic 50.0%
GGACAGAGAAGCAGAGATGA+TGG - chr7_2:67640306-67640325 None:intergenic 50.0%
ATTTCCTATGGTCCGGTCCT+AGG + chr7_2:67640369-67640388 Msa1071180:intron 50.0%
TTTCCTATGGTCCGGTCCTA+GGG + chr7_2:67640370-67640389 Msa1071180:intron 50.0%
TTACAGCAGCATCTAGAGGG+AGG - chr7_2:67641253-67641272 None:intergenic 50.0%
! CGGTGGACTCTCGAGATATA+TGG - chr7_2:67639967-67639986 None:intergenic 50.0%
CCTTCAGGGAGATTGTTGGA+TGG - chr7_2:67640232-67640251 None:intergenic 50.0%
CCATCCAACAATCTCCCTGA+AGG + chr7_2:67640229-67640248 Msa1071180:CDS 50.0%
TGGACCTTCAGGGAGATTGT+TGG - chr7_2:67640236-67640255 None:intergenic 50.0%
ACAATCTCCCTGAAGGTCCA+TGG + chr7_2:67640236-67640255 Msa1071180:CDS 50.0%
AGGGTCTTTAACAGGAGAGG+TGG - chr7_2:67640266-67640285 None:intergenic 50.0%
GGAAGGGTCTTTAACAGGAG+AGG - chr7_2:67640269-67640288 None:intergenic 50.0%
! GATGATGGCCTCTAGGAAGA+TGG - chr7_2:67640291-67640310 None:intergenic 50.0%
! AAGCAGAGATGATGGCCTCT+AGG - chr7_2:67640298-67640317 None:intergenic 50.0%
GGACAGAGAAGCAGAGATGA+TGG - chr7_2:67640306-67640325 None:intergenic 50.0%
ATTTCCTATGGTCCGGTCCT+AGG + chr7_2:67640369-67640388 Msa1071180:intron 50.0%
TTTCCTATGGTCCGGTCCTA+GGG + chr7_2:67640370-67640389 Msa1071180:intron 50.0%
TTACAGCAGCATCTAGAGGG+AGG - chr7_2:67641253-67641272 None:intergenic 50.0%
TGGCACTCCATGGACCTTCA+GGG - chr7_2:67640246-67640265 None:intergenic 55.0%
GACCCTTCCCATCTTCCTAG+AGG + chr7_2:67640280-67640299 Msa1071180:CDS 55.0%
! GGCCTCTAGGAAGATGGGAA+GGG - chr7_2:67640285-67640304 None:intergenic 55.0%
! TGGCCTCTAGGAAGATGGGA+AGG - chr7_2:67640286-67640305 None:intergenic 55.0%
ATTTGGTCCGACCCTAGGAC+CGG - chr7_2:67640384-67640403 None:intergenic 55.0%
! TGGCTTGGAGGTTGCAAGCA+AGG + chr7_2:67641118-67641137 Msa1071180:CDS 55.0%
TGGCACTCCATGGACCTTCA+GGG - chr7_2:67640246-67640265 None:intergenic 55.0%
GACCCTTCCCATCTTCCTAG+AGG + chr7_2:67640280-67640299 Msa1071180:CDS 55.0%
! GGCCTCTAGGAAGATGGGAA+GGG - chr7_2:67640285-67640304 None:intergenic 55.0%
! TGGCCTCTAGGAAGATGGGA+AGG - chr7_2:67640286-67640305 None:intergenic 55.0%
ATTTGGTCCGACCCTAGGAC+CGG - chr7_2:67640384-67640403 None:intergenic 55.0%
! TGGCTTGGAGGTTGCAAGCA+AGG + chr7_2:67641118-67641137 Msa1071180:CDS 55.0%
GGCAAGGCGGTTTACATCGG+TGG - chr7_2:67639984-67640003 None:intergenic 60.0%
!! TGGATGGGTTGCGCTCGATG+AGG - chr7_2:67640216-67640235 None:intergenic 60.0%
GTGGCACTCCATGGACCTTC+AGG - chr7_2:67640247-67640266 None:intergenic 60.0%
ACAGGAGAGGTGGCACTCCA+TGG - chr7_2:67640256-67640275 None:intergenic 60.0%
CTATGGTCCGGTCCTAGGGT+CGG + chr7_2:67640374-67640393 Msa1071180:intron 60.0%
GGCAAGGCGGTTTACATCGG+TGG - chr7_2:67639984-67640003 None:intergenic 60.0%
!! TGGATGGGTTGCGCTCGATG+AGG - chr7_2:67640216-67640235 None:intergenic 60.0%
GTGGCACTCCATGGACCTTC+AGG - chr7_2:67640247-67640266 None:intergenic 60.0%
ACAGGAGAGGTGGCACTCCA+TGG - chr7_2:67640256-67640275 None:intergenic 60.0%
CTATGGTCCGGTCCTAGGGT+CGG + chr7_2:67640374-67640393 Msa1071180:intron 60.0%
CGACCCTAGGACCGGACCAT+AGG - chr7_2:67640376-67640395 None:intergenic 65.0%
CGACCCTAGGACCGGACCAT+AGG - chr7_2:67640376-67640395 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 67639906 67641308 67639906 ID=Msa1071180;Name=Msa1071180
chr7_2 mRNA 67639906 67641308 67639906 ID=Msa1071180-mRNA-1;Parent=Msa1071180;Name=Msa1071180-mRNA-1;_AED=0.35;_eAED=0.35;_QI=38|1|1|1|1|1|4|157|139
chr7_2 exon 67639906 67640018 67639906 ID=Msa1071180-mRNA-1:exon:14659;Parent=Msa1071180-mRNA-1
chr7_2 exon 67640127 67640357 67640127 ID=Msa1071180-mRNA-1:exon:14660;Parent=Msa1071180-mRNA-1
chr7_2 exon 67640929 67641004 67640929 ID=Msa1071180-mRNA-1:exon:14661;Parent=Msa1071180-mRNA-1
chr7_2 exon 67641114 67641308 67641114 ID=Msa1071180-mRNA-1:exon:14662;Parent=Msa1071180-mRNA-1
chr7_2 five_prime_UTR 67639906 67639943 67639906 ID=Msa1071180-mRNA-1:five_prime_utr;Parent=Msa1071180-mRNA-1
chr7_2 CDS 67639944 67640018 67639944 ID=Msa1071180-mRNA-1:cds;Parent=Msa1071180-mRNA-1
chr7_2 CDS 67640127 67640357 67640127 ID=Msa1071180-mRNA-1:cds;Parent=Msa1071180-mRNA-1
chr7_2 CDS 67640929 67641004 67640929 ID=Msa1071180-mRNA-1:cds;Parent=Msa1071180-mRNA-1
chr7_2 CDS 67641114 67641151 67641114 ID=Msa1071180-mRNA-1:cds;Parent=Msa1071180-mRNA-1
chr7_2 three_prime_UTR 67641152 67641308 67641152 ID=Msa1071180-mRNA-1:three_prime_utr;Parent=Msa1071180-mRNA-1
Gene Sequence

>Msa1071180

ATGGCAGCAGTGACTCTGAACCATATATCTCGAGAGTCCACCGATGTAAACCGCCTTGCCAAATTCTATCAAGAGATATTTGGATTTGAGGAAGTAGAAAGTCCCAAGTTCGGAGAGTTTAAGGTTGTATGGTTACGTCTTCCATCTTCATTGTATCTTCACCTCATCGAGCGCAACCCATCCAACAATCTCCCTGAAGGTCCATGGAGTGCCACCTCTCCTGTTAAAGACCCTTCCCATCTTCCTAGAGGCCATCATCTCTGCTTCTCTGTCCCCAATTTCCAATCTTTCCTCCAAACTCTCAAGGATAAGGGCATTGAGACTTTTGAGAAATCTCTGCCTAATGGCAAAATCAAACAAGTTTTCTTCTTTGACCCTGATGGTAATGGCTTGGAGGTTGCAAGCAAGGAAGACTCCTAG

Protein sequence

>Msa1071180

MAAVTLNHISRESTDVNRLAKFYQEIFGFEEVESPKFGEFKVVWLRLPSSLYLHLIERNPSNNLPEGPWSATSPVKDPSHLPRGHHLCFSVPNFQSFLQTLKDKGIETFEKSLPNGKIKQVFFFDPDGNGLEVASKEDS*