AlfalfaGEDB | Msa0796560

M. sativa cultivar zhongmu-4 / Msa0796560

KEGG: K09338
GO: GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141
PFAM: PF04618.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796560	sp\|Q05466\|HAT4_ARATH	65.101	298	88	7	1	296	1	284	5.54e-108	318

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796560	B7FJ62	98.311	296	5	0	1	296	1	296	0.0	598

TFs/TRs:

Gene ID	Type	Classification
Msa0796560	TF	HB-HD-ZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0091910	Msa0796560	0.961451	1.022731e-119	-8.615850e-47
Msa0780470	Msa0796560	0.890167	1.258795e-73	-8.615850e-47
Msa0796560	Msa0834010	0.971249	7.229254e-133	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796560	MtrunA17_Chr5g0399491	98.311	296	5	0	1	296	1	296	0.0	598
Msa0796560	MtrunA17_Chr4g0055851	72.333	300	54	9	1	293	2	279	2.57e-138	392
Msa0796560	MtrunA17_Chr8g0335131	56.958	309	101	10	4	288	3	303	3.00e-94	281
Msa0796560	MtrunA17_Chr7g0258831	64.516	186	58	4	72	250	89	273	9.58e-68	213
Msa0796560	MtrunA17_Chr1g0175651	60.204	196	54	4	71	251	82	268	1.13e-66	210
Msa0796560	MtrunA17_Chr2g0308611	73.026	152	35	4	112	260	175	323	1.17e-65	209
Msa0796560	MtrunA17_Chr4g0054421	78.049	123	26	1	127	249	118	239	5.60e-61	194
Msa0796560	MtrunA17_Chr5g0400781	65.972	144	46	2	127	268	114	256	4.47e-60	192
Msa0796560	MtrunA17_Chr1g0151971	51.667	180	73	5	96	263	88	265	1.19e-51	171
Msa0796560	MtrunA17_Chr4g0044091	62.097	124	42	1	130	248	59	182	1.93e-45	152
Msa0796560	MtrunA17_Chr2g0299031	57.627	118	50	0	136	253	82	199	3.07e-41	142
Msa0796560	MtrunA17_Chr3g0135331	65.217	115	38	2	135	249	144	256	4.61e-39	139
Msa0796560	MtrunA17_Chr4g0071411	61.404	114	41	1	138	248	90	203	1.19e-38	135
Msa0796560	MtrunA17_Chr7g0217111	42.537	134	63	3	97	225	49	173	2.53e-20	88.2
Msa0796560	MtrunA17_Chr5g0415941	39.535	172	77	6	78	228	20	185	1.59e-19	87.0
Msa0796560	MtrunA17_Chr8g0362151	41.463	123	70	2	100	222	43	163	5.92e-19	84.7
Msa0796560	MtrunA17_Chr6g0450991	43.590	117	65	1	136	252	67	182	1.55e-18	83.6
Msa0796560	MtrunA17_Chr4g0060031	52.632	95	38	1	134	221	93	187	4.84e-18	83.2
Msa0796560	MtrunA17_Chr6g0453021	31.401	207	106	5	18	223	12	183	5.39e-18	82.0
Msa0796560	MtrunA17_Chr5g0416391	39.516	124	75	0	100	223	41	164	1.12e-17	81.3
Msa0796560	MtrunA17_Chr3g0119291	38.926	149	65	4	97	223	9	153	3.33e-17	79.3
Msa0796560	MtrunA17_Chr7g0265521	45.455	88	48	0	136	223	63	150	9.34e-17	77.8
Msa0796560	MtrunA17_Chr3g0123691	40.625	128	68	2	128	247	52	179	2.03e-16	77.8
Msa0796560	MtrunA17_Chr8g0381741	47.475	99	45	1	132	223	50	148	2.34e-16	77.8
Msa0796560	MtrunA17_Chr1g0179581	48.193	83	43	0	136	218	28	110	5.17e-16	72.8
Msa0796560	MtrunA17_Chr8g0362751	46.809	94	43	1	136	222	89	182	1.17e-15	75.5
Msa0796560	MtrunA17_Chr8g0346251	42.683	82	47	0	140	221	45	126	1.20e-11	63.5
Msa0796560	MtrunA17_Chr5g0410711	31.690	142	91	1	80	221	42	177	2.26e-11	64.3
Msa0796560	MtrunA17_Chr5g0403691	41.905	105	59	1	128	230	45	149	9.66e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796560	AT4G16780.1	65.101	298	88	7	1	296	1	284	5.63e-109	318
Msa0796560	AT5G47370.1	59.936	312	80	13	1	296	1	283	7.82e-107	312
Msa0796560	AT4G17460.1	59.032	310	85	11	1	296	1	282	2.93e-105	308
Msa0796560	AT3G60390.1	59.060	298	84	14	17	287	23	309	1.33e-91	275
Msa0796560	AT2G44910.1	53.165	316	115	12	4	288	3	316	3.19e-84	256
Msa0796560	AT5G06710.1	61.421	197	64	6	91	277	135	329	2.91e-67	213
Msa0796560	AT4G37790.1	59.358	187	57	5	105	273	86	271	3.56e-62	198
Msa0796560	AT2G22800.1	72.308	130	32	2	123	249	97	225	2.69e-58	188
Msa0796560	AT2G01430.1	52.299	174	65	4	92	256	95	259	5.51e-44	151
Msa0796560	AT1G70920.1	60.976	123	37	2	135	257	68	179	8.85e-38	133
Msa0796560	AT1G70920.2	60.976	123	37	2	135	257	38	149	9.10e-38	132
Msa0796560	AT5G06710.4	58.879	107	34	4	91	187	135	241	4.60e-27	107
Msa0796560	AT1G69780.1	41.221	131	67	2	98	223	47	172	4.93e-20	88.2
Msa0796560	AT2G01430.2	47.059	119	49	3	92	204	95	205	5.82e-19	84.0
Msa0796560	AT1G26960.1	46.341	123	61	4	103	223	39	158	1.78e-18	83.2
Msa0796560	AT3G01470.1	48.387	93	41	1	136	221	68	160	6.16e-17	79.3
Msa0796560	AT5G03790.1	37.313	134	83	1	136	269	77	209	4.44e-16	76.3
Msa0796560	AT5G15150.1	38.983	118	65	1	106	223	92	202	2.64e-15	75.5
Msa0796560	AT1G27045.4	47.748	111	45	3	127	224	53	163	3.64e-15	73.9
Msa0796560	AT3G01220.1	45.745	94	47	1	136	225	87	180	4.97e-15	74.3
Msa0796560	AT1G27045.1	54.321	81	31	1	127	201	53	133	9.36e-15	72.4
Msa0796560	AT1G27045.2	59.091	66	27	0	136	201	17	82	1.03e-14	71.2
Msa0796560	AT1G27045.5	59.091	66	27	0	136	201	25	90	1.08e-14	71.2
Msa0796560	AT1G27045.3	59.091	66	27	0	136	201	25	90	1.08e-14	71.2
Msa0796560	AT5G65310.1	35.417	144	84	3	133	269	69	210	1.87e-14	72.8
Msa0796560	AT4G40060.1	44.330	97	47	1	134	223	57	153	1.96e-14	72.8
Msa0796560	AT5G65310.2	35.417	144	84	3	133	269	51	192	2.40e-14	72.4
Msa0796560	AT2G22430.1	44.792	96	49	1	134	225	60	155	4.51e-14	71.6
Msa0796560	AT5G03790.2	43.956	91	51	0	136	226	77	167	3.94e-13	67.4
Msa0796560	AT2G46680.1	41.053	95	52	1	139	229	35	129	4.87e-13	68.2
Msa0796560	AT2G46680.2	40.909	88	52	0	139	226	35	122	5.39e-13	67.8
Msa0796560	AT2G36610.1	39.796	98	51	1	135	224	70	167	1.14e-12	65.9
Msa0796560	AT4G36740.1	43.678	87	49	0	136	222	55	141	6.28e-12	64.3
Msa0796560	AT4G36740.2	43.678	87	49	0	136	222	56	142	6.43e-12	64.3
Msa0796560	AT5G53980.1	42.391	92	53	0	131	222	6	97	4.46e-11	60.5
Msa0796560	AT2G18550.1	43.678	87	49	0	136	222	61	147	6.09e-11	61.6

Find 116 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAATTGCTGGGACTAATTA+TGG	0.129012	5_3:+8620527	Msa0796560:three_prime_UTR
TAAAAGTCAAATTTATATTT+TGG	0.135798	5_3:+8620418	Msa0796560:three_prime_UTR
AAACATTAGTTCAAGAATTT+AGG	0.141123	5_3:+8620626	Msa0796560:three_prime_UTR
AGTATTGAAAAGGAAGATTT+TGG	0.211828	5_3:+8618603	Msa0796560:CDS
ATTGCTTTAGGATTGGAATT+TGG	0.216882	5_3:+8620445	Msa0796560:three_prime_UTR
TGAACTAATGTTTGGTCATT+TGG	0.221194	5_3:-8620616	None:intergenic
TTGACCCCATTGTCTTCTTT+TGG	0.246088	5_3:+8620256	Msa0796560:three_prime_UTR
TATATAGAAAGGAGAGAAAA+TGG	0.247436	5_3:-8618407	None:intergenic
CCTTCTTCTAGTTCTATAAT+TGG	0.258874	5_3:-8620679	None:intergenic
TCAAGAATTTAGGGGCCTTA+TGG	0.281449	5_3:+8620636	Msa0796560:three_prime_UTR
AGATTAAGGTATTGAGGATT+TGG	0.288551	5_3:-8618660	None:intergenic
GAGAATAATTGATTGGTCTT+TGG	0.289348	5_3:-8619232	None:intergenic
AACATTAGTTCAAGAATTTA+GGG	0.293524	5_3:+8620627	Msa0796560:three_prime_UTR
CGTATCTTCAAAGTCATAAA+AGG	0.294812	5_3:-8620504	None:intergenic
ATGAAACAAATGAAACAAAA+TGG	0.303398	5_3:+8620130	Msa0796560:three_prime_UTR
GGAAATGGACGTGGGTGATT+TGG	0.317565	5_3:-8620007	None:intergenic
CAAGAATTTAGGGGCCTTAT+GGG	0.322130	5_3:+8620637	Msa0796560:three_prime_UTR
TGCTTTGAACACAAAATTCA+TGG	0.325878	5_3:-8620166	None:intergenic
TTGAAGAAGACATAAGATTA+AGG	0.336048	5_3:-8618674	None:intergenic
ATTGGCACTTGCAAAACAAT+TGG	0.337338	5_3:+8619389	Msa0796560:CDS
TAAATTCTTGAACTAATGTT+TGG	0.339245	5_3:-8620624	None:intergenic
GCCCATGGTCCCACAGGAAA+TGG	0.346020	5_3:-8620022	None:intergenic
GAACTAATGTTTGGTCATTT+GGG	0.352521	5_3:-8620615	None:intergenic
GCAAAATTGAACATTAATAA+AGG	0.361400	5_3:+8620585	Msa0796560:three_prime_UTR
TTTGAAGATACGGCAATTGC+TGG	0.362281	5_3:+8620515	Msa0796560:three_prime_UTR
AAGTGGGGAGGCAGGGTTGT+GGG	0.366973	5_3:-8618433	None:intergenic
TCAAAGCACTGTTTAAGATA+TGG	0.381394	5_3:+8620181	Msa0796560:three_prime_UTR
TTTGAGGGAAGCTCAAACTT+AGG	0.385146	5_3:-8618632	None:intergenic
GTGCTAGACAAGTTGAAGTT+TGG	0.390504	5_3:+8619418	Msa0796560:CDS
GATTGGAATTTGGAAATGTA+TGG	0.393903	5_3:+8620455	Msa0796560:three_prime_UTR
CAATTGCTGGGACTAATTAT+GGG	0.401969	5_3:+8620528	Msa0796560:three_prime_UTR
AAGAAGACGCTGAAACTTCA+AGG	0.402562	5_3:+8619193	Msa0796560:CDS
TCTCTTCGAGAATAATTGAT+TGG	0.404047	5_3:-8619239	None:intergenic
GGACTAATTATGGGTTGGTT+GGG	0.404842	5_3:+8620537	Msa0796560:three_prime_UTR
TTATAATGAAGTGGGGAGGC+AGG	0.416609	5_3:-8618441	None:intergenic
GAAGTGGGGAGGCAGGGTTG+TGG	0.417504	5_3:-8618434	None:intergenic
CTAAACCAAAAGAAGACAAT+GGG	0.420191	5_3:-8620261	None:intergenic
GACATAAGATTAAGGTATTG+AGG	0.421167	5_3:-8618666	None:intergenic
GATGTGAATCGGTTACCTTC+TGG	0.421492	5_3:+8619033	Msa0796560:CDS
AATTGGAAGGCTAAATCAAT+GGG	0.423173	5_3:-8620662	None:intergenic
GGGACTAATTATGGGTTGGT+TGG	0.429431	5_3:+8620536	Msa0796560:three_prime_UTR
TTTACATGCAGATCGGGATT+CGG	0.433835	5_3:+8618966	Msa0796560:intron
ACACTTGAAACGGTGCTGTT+TGG	0.443597	5_3:-8619090	None:intergenic
ATATAGAAAGGAGAGAAAAT+GGG	0.445801	5_3:-8618406	None:intergenic
TTGGCACTTGCAAAACAATT+GGG	0.452760	5_3:+8619390	Msa0796560:CDS
TGGCTTAATTGCTTTAGGAT+TGG	0.454242	5_3:+8620438	Msa0796560:three_prime_UTR
GGGCACATGGTAAGAGTTGT+TGG	0.457834	5_3:-8619917	None:intergenic
GTCCATTTCCTGTGGGACCA+TGG	0.458770	5_3:+8620020	Msa0796560:CDS
TAATTGGAAGGCTAAATCAA+TGG	0.462007	5_3:-8620663	None:intergenic
AGTGGGGAGGCAGGGTTGTG+GGG	0.473121	5_3:-8618432	None:intergenic
TGAAAATAGACGGTTACAAA+AGG	0.474850	5_3:+8619835	Msa0796560:CDS
CCAATTATAGAACTAGAAGA+AGG	0.483800	5_3:+8620679	Msa0796560:three_prime_UTR
TTTACCACTCACACTTGAAA+CGG	0.484021	5_3:-8619100	None:intergenic
TCCATTTCCTGTGGGACCAT+GGG	0.490692	5_3:+8620021	Msa0796560:CDS
TTAAGGTATTGAGGATTTGG+TGG	0.491711	5_3:-8618657	None:intergenic
AGAAGCGAAAGAGAAGTTAC+AGG	0.494456	5_3:+8619123	Msa0796560:CDS
GCAGCATCAACGGCAGATGA+TGG	0.502736	5_3:-8619962	None:intergenic
ATTGAAAGTAGAAGGAGAAG+AGG	0.503918	5_3:-8618703	None:intergenic
GATGACTTGACATAAAGTTA+TGG	0.506271	5_3:+8618358	Msa0796560:five_prime_UTR
CTTCTAGTTCTATAATTGGA+AGG	0.513910	5_3:-8620675	None:intergenic
ATCCGTACAAGTTAAGATCT+AGG	0.515404	5_3:-8620088	None:intergenic
TAAATCAATGGGGACCCATA+AGG	0.515986	5_3:-8620651	None:intergenic
TCATTTGCATGTAGAATTGT+GGG	0.520585	5_3:-8619889	None:intergenic
GTCATTTGCATGTAGAATTG+TGG	0.521859	5_3:-8619890	None:intergenic
ATGGATGATTATAATGAAGT+GGG	0.522107	5_3:-8618449	None:intergenic
TCGATTCCTCGGAGAAGTAA+AGG	0.525636	5_3:-8619012	None:intergenic
TATAATGAAGTGGGGAGGCA+GGG	0.526426	5_3:-8618440	None:intergenic
TCCGAGGAATCGATGTGAAT+CGG	0.527394	5_3:+8619022	Msa0796560:CDS
GTTGTGGGGAATATATAGAA+AGG	0.529222	5_3:-8618418	None:intergenic
GTCCTAGATCTTAACTTGTA+CGG	0.534286	5_3:+8620086	Msa0796560:exon
TTGAAGATACGGCAATTGCT+GGG	0.535743	5_3:+8620516	Msa0796560:three_prime_UTR
GCTGTGGCCCATGGTCCCAC+AGG	0.538822	5_3:-8620028	None:intergenic
TCAAAGGTCCTATGTTGGAT+AGG	0.542840	5_3:-8620055	None:intergenic
TGCTGGGACTAATTATGGGT+TGG	0.543623	5_3:+8620532	Msa0796560:three_prime_UTR
ACGACGCGTGGCAGCATCAA+CGG	0.548952	5_3:-8619972	None:intergenic
ATGGAAAGAGATTGTTCAAG+AGG	0.550270	5_3:+8619159	Msa0796560:CDS
TGCCACGCGTCGTCATCCTA+TGG	0.554799	5_3:+8619982	Msa0796560:CDS
ACCGATTCACATCGATTCCT+CGG	0.556594	5_3:-8619023	None:intergenic
CGTGGGTGATTTGGAGCCAT+AGG	0.560215	5_3:-8619998	None:intergenic
TATAGAAAGGAGAGAAAATG+GGG	0.563355	5_3:-8618405	None:intergenic
CACATGGTAAGAGTTGTTGG+TGG	0.564954	5_3:-8619914	None:intergenic
ATAGGAGCAGCTGTGGCCCA+TGG	0.566808	5_3:-8620037	None:intergenic
GATGGATGATTATAATGAAG+TGG	0.580263	5_3:-8618450	None:intergenic
GGTCCCACAGGAAATGGACG+TGG	0.582860	5_3:-8620016	None:intergenic
GGTTTCAAAATCGTAGAGCA+AGG	0.583437	5_3:+8619439	Msa0796560:CDS
ACAGCAACACGCTCACAAGA+GGG	0.586849	5_3:-8619938	None:intergenic
ATGTTGGATAGGAGCAGCTG+TGG	0.588541	5_3:-8620044	None:intergenic
CAGCTGCTCCTATCCAACAT+AGG	0.588914	5_3:+8620047	Msa0796560:CDS
ACTAAACCAAAAGAAGACAA+TGG	0.591131	5_3:-8620262	None:intergenic
GTGTATCAAAGGTCCTATGT+TGG	0.591308	5_3:-8620060	None:intergenic
CACCCACGTCCATTTCCTGT+GGG	0.600865	5_3:+8620013	Msa0796560:CDS
AACAGCAACACGCTCACAAG+AGG	0.612400	5_3:-8619939	None:intergenic
ATCTAACGGATGAAAATAGA+CGG	0.614300	5_3:+8619825	Msa0796560:CDS
TCACCCACGTCCATTTCCTG+TGG	0.615645	5_3:+8620012	Msa0796560:CDS
TGGATGATTATAATGAAGTG+GGG	0.615876	5_3:-8618448	None:intergenic
TCTAGGACGGAGTGTATCAA+AGG	0.615968	5_3:-8620071	None:intergenic
TTTCTTGTATTACAAGAACA+AGG	0.618850	5_3:+8618567	Msa0796560:five_prime_UTR
TCTTCACAATCAGCACCAGA+AGG	0.621185	5_3:-8619048	None:intergenic
ACGCTCACAAGAGGGGCACA+TGG	0.624285	5_3:-8619930	None:intergenic
GCTGATTGTGAAGAAGAAGC+AGG	0.645646	5_3:+8619057	Msa0796560:CDS
ATGATTATAATGAAGTGGGG+AGG	0.647038	5_3:-8618445	None:intergenic
ACATTAGTTCAAGAATTTAG+GGG	0.653857	5_3:+8620628	Msa0796560:three_prime_UTR
GTACAAGTTAAGATCTAGGA+CGG	0.655097	5_3:-8620084	None:intergenic
AGCCATAGGATGACGACGCG+TGG	0.657092	5_3:-8619984	None:intergenic
TACAGGTGAAGATCTTGACA+TGG	0.657130	5_3:+8619140	Msa0796560:CDS
CAGCAACACGCTCACAAGAG+GGG	0.670133	5_3:-8619937	None:intergenic
AGCACCGTTTCAAGTGTGAG+TGG	0.674395	5_3:+8619096	Msa0796560:CDS
AGACATGCAGAATCGAAGAA+CGG	0.674956	5_3:+8618989	Msa0796560:CDS
TAGAAAGGAGAGAAAATGGG+GGG	0.675474	5_3:-8618403	None:intergenic
GAACGGCCTTTACTTCTCCG+AGG	0.691005	5_3:+8619006	Msa0796560:CDS
ATAGAAAGGAGAGAAAATGG+GGG	0.701273	5_3:-8618404	None:intergenic
GTCCCACAGGAAATGGACGT+GGG	0.703771	5_3:-8620015	None:intergenic
CATTTGCATGTAGAATTGTG+GGG	0.706166	5_3:-8619888	None:intergenic
AAGATGTTGTGAGAATCTAA+CGG	0.732801	5_3:+8619811	Msa0796560:CDS
ATTGGAAGGCTAAATCAATG+GGG	0.737508	5_3:-8620661	None:intergenic
TAAACCAAAAGAAGACAATG+GGG	0.742497	5_3:-8620260	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAAAAATCAATTTAAGTTAA+TGG	-	chr5_3:8619660-8619679	None:intergenic	10.0%
!!!	TTATCAATATTTTTTTTTGA+AGG	+	chr5_3:8619696-8619715	Msa0796560:intron	10.0%
!!	CAATATTTATTTATTTATGT+TGG	+	chr5_3:8619725-8619744	Msa0796560:intron	10.0%
!!!	TAAAAGTCAAATTTATATTT+TGG	+	chr5_3:8620418-8620437	Msa0796560:three_prime_UTR	10.0%
!!!	TAAAAATCAATTTAAGTTAA+TGG	-	chr5_3:8619660-8619679	None:intergenic	10.0%
!!!	TTATCAATATTTTTTTTTGA+AGG	+	chr5_3:8619696-8619715	Msa0796560:intron	10.0%
!!	CAATATTTATTTATTTATGT+TGG	+	chr5_3:8619725-8619744	Msa0796560:intron	10.0%
!!!	TAAAAGTCAAATTTATATTT+TGG	+	chr5_3:8620418-8620437	Msa0796560:three_prime_UTR	10.0%
!!	ATGAAAATGATTGTTAATTA+AGG	-	chr5_3:8618829-8618848	None:intergenic	15.0%
!!	TTACACTTAATTAATACTTA+CGG	-	chr5_3:8619292-8619311	None:intergenic	15.0%
!!	ATGAAAATGATTGTTAATTA+AGG	-	chr5_3:8618829-8618848	None:intergenic	15.0%
!!	TTACACTTAATTAATACTTA+CGG	-	chr5_3:8619292-8619311	None:intergenic	15.0%
!!!	AGAAAAAATGAGTATTGAAA+AGG	+	chr5_3:8618593-8618612	Msa0796560:exon	20.0%
!!	TATTATTCCAAAGTTGTAAT+TGG	-	chr5_3:8618799-8618818	None:intergenic	20.0%
!!	TACACTTAATTAATACTTAC+GGG	-	chr5_3:8619291-8619310	None:intergenic	20.0%
!!	TTGTTTGTAGAAACAAAAAT+TGG	+	chr5_3:8619371-8619390	Msa0796560:intron	20.0%
!!!	TTTAAAACTCAAAAGATATC+CGG	+	chr5_3:8619499-8619518	Msa0796560:intron	20.0%
!!	ATGAAACAAATGAAACAAAA+TGG	+	chr5_3:8620130-8620149	Msa0796560:three_prime_UTR	20.0%
!!	GCAAAATTGAACATTAATAA+AGG	+	chr5_3:8620585-8620604	Msa0796560:three_prime_UTR	20.0%
!!	TAAATTCTTGAACTAATGTT+TGG	-	chr5_3:8620627-8620646	None:intergenic	20.0%
!!	AAACATTAGTTCAAGAATTT+AGG	+	chr5_3:8620626-8620645	Msa0796560:three_prime_UTR	20.0%
!!	AACATTAGTTCAAGAATTTA+GGG	+	chr5_3:8620627-8620646	Msa0796560:three_prime_UTR	20.0%
!!!	AGAAAAAATGAGTATTGAAA+AGG	+	chr5_3:8618593-8618612	Msa0796560:exon	20.0%
!!	TATTATTCCAAAGTTGTAAT+TGG	-	chr5_3:8618799-8618818	None:intergenic	20.0%
!!	TACACTTAATTAATACTTAC+GGG	-	chr5_3:8619291-8619310	None:intergenic	20.0%
!!	TTGTTTGTAGAAACAAAAAT+TGG	+	chr5_3:8619371-8619390	Msa0796560:intron	20.0%
!!!	TTTAAAACTCAAAAGATATC+CGG	+	chr5_3:8619499-8619518	Msa0796560:intron	20.0%
!!	ATGAAACAAATGAAACAAAA+TGG	+	chr5_3:8620130-8620149	Msa0796560:three_prime_UTR	20.0%
!!	GCAAAATTGAACATTAATAA+AGG	+	chr5_3:8620585-8620604	Msa0796560:three_prime_UTR	20.0%
!!	TAAATTCTTGAACTAATGTT+TGG	-	chr5_3:8620627-8620646	None:intergenic	20.0%
!!	AAACATTAGTTCAAGAATTT+AGG	+	chr5_3:8620626-8620645	Msa0796560:three_prime_UTR	20.0%
!!	AACATTAGTTCAAGAATTTA+GGG	+	chr5_3:8620627-8620646	Msa0796560:three_prime_UTR	20.0%
!	ATATAGAAAGGAGAGAAAAT+GGG	-	chr5_3:8618409-8618428	None:intergenic	25.0%
!	TATATAGAAAGGAGAGAAAA+TGG	-	chr5_3:8618410-8618429	None:intergenic	25.0%
!	ATGGATGATTATAATGAAGT+GGG	-	chr5_3:8618452-8618471	None:intergenic	25.0%
!!!	TAAAGTGCTTTGTTTTTTGA+AGG	-	chr5_3:8618541-8618560	None:intergenic	25.0%
!	TTTCTTGTATTACAAGAACA+AGG	+	chr5_3:8618567-8618586	Msa0796560:five_prime_UTR	25.0%
!!!	AGTATTGAAAAGGAAGATTT+TGG	+	chr5_3:8618603-8618622	Msa0796560:CDS	25.0%
!	TTGAAGAAGACATAAGATTA+AGG	-	chr5_3:8618677-8618696	None:intergenic	25.0%
!!!	AATGATGTTTTTACTTCTTC+AGG	+	chr5_3:8618744-8618763	Msa0796560:CDS	25.0%
!	GTAAAGGAAGGAAATTATAT+AGG	-	chr5_3:8618864-8618883	None:intergenic	25.0%
!	TAAGATAGATTACAGAGTAA+AGG	-	chr5_3:8618880-8618899	None:intergenic	25.0%
!!!	ATCTTATTTTACATGCAGAT+CGG	+	chr5_3:8618959-8618978	Msa0796560:intron	25.0%
!	ACACTTAATTAATACTTACG+GGG	-	chr5_3:8619290-8619309	None:intergenic	25.0%
!!!	TTGACTAGTCTTTATTTAGT+TGG	+	chr5_3:8619471-8619490	Msa0796560:intron	25.0%
!!	GTTTGTTAAATTGTGATTTC+AGG	+	chr5_3:8619747-8619766	Msa0796560:intron	25.0%
!!	TGTTAGAAGAAATGATTTTG+TGG	+	chr5_3:8620205-8620224	Msa0796560:three_prime_UTR	25.0%
!!	GTTAGAAGAAATGATTTTGT+GGG	+	chr5_3:8620206-8620225	Msa0796560:three_prime_UTR	25.0%
!!!	TATTTTGGCTTAATTGCTTT+AGG	+	chr5_3:8620433-8620452	Msa0796560:three_prime_UTR	25.0%
!!!	CTTTTATGACTTTGAAGATA+CGG	+	chr5_3:8620505-8620524	Msa0796560:three_prime_UTR	25.0%
!	ACATTAGTTCAAGAATTTAG+GGG	+	chr5_3:8620628-8620647	Msa0796560:three_prime_UTR	25.0%
!	ATATAGAAAGGAGAGAAAAT+GGG	-	chr5_3:8618409-8618428	None:intergenic	25.0%
!	TATATAGAAAGGAGAGAAAA+TGG	-	chr5_3:8618410-8618429	None:intergenic	25.0%
!	ATGGATGATTATAATGAAGT+GGG	-	chr5_3:8618452-8618471	None:intergenic	25.0%
!!!	TAAAGTGCTTTGTTTTTTGA+AGG	-	chr5_3:8618541-8618560	None:intergenic	25.0%
!	TTTCTTGTATTACAAGAACA+AGG	+	chr5_3:8618567-8618586	Msa0796560:five_prime_UTR	25.0%
!!!	AGTATTGAAAAGGAAGATTT+TGG	+	chr5_3:8618603-8618622	Msa0796560:CDS	25.0%
!	TTGAAGAAGACATAAGATTA+AGG	-	chr5_3:8618677-8618696	None:intergenic	25.0%
!!!	AATGATGTTTTTACTTCTTC+AGG	+	chr5_3:8618744-8618763	Msa0796560:CDS	25.0%
!	GTAAAGGAAGGAAATTATAT+AGG	-	chr5_3:8618864-8618883	None:intergenic	25.0%
!	TAAGATAGATTACAGAGTAA+AGG	-	chr5_3:8618880-8618899	None:intergenic	25.0%
!!!	ATCTTATTTTACATGCAGAT+CGG	+	chr5_3:8618959-8618978	Msa0796560:intron	25.0%
!	ACACTTAATTAATACTTACG+GGG	-	chr5_3:8619290-8619309	None:intergenic	25.0%
!!!	TTGACTAGTCTTTATTTAGT+TGG	+	chr5_3:8619471-8619490	Msa0796560:intron	25.0%
!!	GTTTGTTAAATTGTGATTTC+AGG	+	chr5_3:8619747-8619766	Msa0796560:intron	25.0%
!!	TGTTAGAAGAAATGATTTTG+TGG	+	chr5_3:8620205-8620224	Msa0796560:three_prime_UTR	25.0%
!!	GTTAGAAGAAATGATTTTGT+GGG	+	chr5_3:8620206-8620225	Msa0796560:three_prime_UTR	25.0%
!!!	TATTTTGGCTTAATTGCTTT+AGG	+	chr5_3:8620433-8620452	Msa0796560:three_prime_UTR	25.0%
!!!	CTTTTATGACTTTGAAGATA+CGG	+	chr5_3:8620505-8620524	Msa0796560:three_prime_UTR	25.0%
!	ACATTAGTTCAAGAATTTAG+GGG	+	chr5_3:8620628-8620647	Msa0796560:three_prime_UTR	25.0%
	GATGACTTGACATAAAGTTA+TGG	+	chr5_3:8618358-8618377	Msa0796560:five_prime_UTR	30.0%
	TATAGAAAGGAGAGAAAATG+GGG	-	chr5_3:8618408-8618427	None:intergenic	30.0%
	TGGATGATTATAATGAAGTG+GGG	-	chr5_3:8618451-8618470	None:intergenic	30.0%
	GATGGATGATTATAATGAAG+TGG	-	chr5_3:8618453-8618472	None:intergenic	30.0%
!!!	TTTGTTTTTTGAAGGAGGTT+GGG	-	chr5_3:8618533-8618552	None:intergenic	30.0%
!!	AGATTAAGGTATTGAGGATT+TGG	-	chr5_3:8618663-8618682	None:intergenic	30.0%
!!	GACATAAGATTAAGGTATTG+AGG	-	chr5_3:8618669-8618688	None:intergenic	30.0%
!!	TTTTGAGGATTGAAAGTAGA+AGG	-	chr5_3:8618714-8618733	None:intergenic	30.0%
	GTAAAAACATCATTCCAAGA+AGG	-	chr5_3:8618738-8618757	None:intergenic	30.0%
	ATAGATTACAGAGTAAAGGA+AGG	-	chr5_3:8618876-8618895	None:intergenic	30.0%
!!!	TCTTATTTTACATGCAGATC+GGG	+	chr5_3:8618960-8618979	Msa0796560:intron	30.0%
!!	GAGAATAATTGATTGGTCTT+TGG	-	chr5_3:8619235-8619254	None:intergenic	30.0%
	TCTCTTCGAGAATAATTGAT+TGG	-	chr5_3:8619242-8619261	None:intergenic	30.0%
	AAGATGTTGTGAGAATCTAA+CGG	+	chr5_3:8619811-8619830	Msa0796560:CDS	30.0%
!	ATCTAACGGATGAAAATAGA+CGG	+	chr5_3:8619825-8619844	Msa0796560:CDS	30.0%
	TGAAAATAGACGGTTACAAA+AGG	+	chr5_3:8619835-8619854	Msa0796560:CDS	30.0%
	TCATTTGCATGTAGAATTGT+GGG	-	chr5_3:8619892-8619911	None:intergenic	30.0%
!	TGCTTTGAACACAAAATTCA+TGG	-	chr5_3:8620169-8620188	None:intergenic	30.0%
!!	TCAAAGCACTGTTTAAGATA+TGG	+	chr5_3:8620181-8620200	Msa0796560:three_prime_UTR	30.0%
	TAAACCAAAAGAAGACAATG+GGG	-	chr5_3:8620263-8620282	None:intergenic	30.0%
	CTAAACCAAAAGAAGACAAT+GGG	-	chr5_3:8620264-8620283	None:intergenic	30.0%
	ACTAAACCAAAAGAAGACAA+TGG	-	chr5_3:8620265-8620284	None:intergenic	30.0%
!!	ATTGCTTTAGGATTGGAATT+TGG	+	chr5_3:8620445-8620464	Msa0796560:three_prime_UTR	30.0%
	GATTGGAATTTGGAAATGTA+TGG	+	chr5_3:8620455-8620474	Msa0796560:three_prime_UTR	30.0%
	CGTATCTTCAAAGTCATAAA+AGG	-	chr5_3:8620507-8620526	None:intergenic	30.0%
	GAACTAATGTTTGGTCATTT+GGG	-	chr5_3:8620618-8620637	None:intergenic	30.0%
	TGAACTAATGTTTGGTCATT+TGG	-	chr5_3:8620619-8620638	None:intergenic	30.0%
	AATTGGAAGGCTAAATCAAT+GGG	-	chr5_3:8620665-8620684	None:intergenic	30.0%
	TAATTGGAAGGCTAAATCAA+TGG	-	chr5_3:8620666-8620685	None:intergenic	30.0%
!!	CTTCTAGTTCTATAATTGGA+AGG	-	chr5_3:8620678-8620697	None:intergenic	30.0%
	GATGACTTGACATAAAGTTA+TGG	+	chr5_3:8618358-8618377	Msa0796560:five_prime_UTR	30.0%
	TATAGAAAGGAGAGAAAATG+GGG	-	chr5_3:8618408-8618427	None:intergenic	30.0%
	TGGATGATTATAATGAAGTG+GGG	-	chr5_3:8618451-8618470	None:intergenic	30.0%
	GATGGATGATTATAATGAAG+TGG	-	chr5_3:8618453-8618472	None:intergenic	30.0%
!!!	TTTGTTTTTTGAAGGAGGTT+GGG	-	chr5_3:8618533-8618552	None:intergenic	30.0%
!!	AGATTAAGGTATTGAGGATT+TGG	-	chr5_3:8618663-8618682	None:intergenic	30.0%
!!	GACATAAGATTAAGGTATTG+AGG	-	chr5_3:8618669-8618688	None:intergenic	30.0%
!!	TTTTGAGGATTGAAAGTAGA+AGG	-	chr5_3:8618714-8618733	None:intergenic	30.0%
	GTAAAAACATCATTCCAAGA+AGG	-	chr5_3:8618738-8618757	None:intergenic	30.0%
	ATAGATTACAGAGTAAAGGA+AGG	-	chr5_3:8618876-8618895	None:intergenic	30.0%
!!!	TCTTATTTTACATGCAGATC+GGG	+	chr5_3:8618960-8618979	Msa0796560:intron	30.0%
!!	GAGAATAATTGATTGGTCTT+TGG	-	chr5_3:8619235-8619254	None:intergenic	30.0%
	TCTCTTCGAGAATAATTGAT+TGG	-	chr5_3:8619242-8619261	None:intergenic	30.0%
	AAGATGTTGTGAGAATCTAA+CGG	+	chr5_3:8619811-8619830	Msa0796560:CDS	30.0%
!	ATCTAACGGATGAAAATAGA+CGG	+	chr5_3:8619825-8619844	Msa0796560:CDS	30.0%
	TGAAAATAGACGGTTACAAA+AGG	+	chr5_3:8619835-8619854	Msa0796560:CDS	30.0%
	TCATTTGCATGTAGAATTGT+GGG	-	chr5_3:8619892-8619911	None:intergenic	30.0%
!	TGCTTTGAACACAAAATTCA+TGG	-	chr5_3:8620169-8620188	None:intergenic	30.0%
!!	TCAAAGCACTGTTTAAGATA+TGG	+	chr5_3:8620181-8620200	Msa0796560:three_prime_UTR	30.0%
	TAAACCAAAAGAAGACAATG+GGG	-	chr5_3:8620263-8620282	None:intergenic	30.0%
	CTAAACCAAAAGAAGACAAT+GGG	-	chr5_3:8620264-8620283	None:intergenic	30.0%
	ACTAAACCAAAAGAAGACAA+TGG	-	chr5_3:8620265-8620284	None:intergenic	30.0%
!!	ATTGCTTTAGGATTGGAATT+TGG	+	chr5_3:8620445-8620464	Msa0796560:three_prime_UTR	30.0%
	GATTGGAATTTGGAAATGTA+TGG	+	chr5_3:8620455-8620474	Msa0796560:three_prime_UTR	30.0%
	CGTATCTTCAAAGTCATAAA+AGG	-	chr5_3:8620507-8620526	None:intergenic	30.0%
	GAACTAATGTTTGGTCATTT+GGG	-	chr5_3:8620618-8620637	None:intergenic	30.0%
	TGAACTAATGTTTGGTCATT+TGG	-	chr5_3:8620619-8620638	None:intergenic	30.0%
	AATTGGAAGGCTAAATCAAT+GGG	-	chr5_3:8620665-8620684	None:intergenic	30.0%
	TAATTGGAAGGCTAAATCAA+TGG	-	chr5_3:8620666-8620685	None:intergenic	30.0%
!!	CTTCTAGTTCTATAATTGGA+AGG	-	chr5_3:8620678-8620697	None:intergenic	30.0%
	ATAGAAAGGAGAGAAAATGG+GGG	-	chr5_3:8618407-8618426	None:intergenic	35.0%
	GTTGTGGGGAATATATAGAA+AGG	-	chr5_3:8618421-8618440	None:intergenic	35.0%
	ATGATTATAATGAAGTGGGG+AGG	-	chr5_3:8618448-8618467	None:intergenic	35.0%
!!!	TTGTTTTTTGAAGGAGGTTG+GGG	-	chr5_3:8618532-8618551	None:intergenic	35.0%
!!!	CTTTGTTTTTTGAAGGAGGT+TGG	-	chr5_3:8618534-8618553	None:intergenic	35.0%
!!!	AGTGCTTTGTTTTTTGAAGG+AGG	-	chr5_3:8618538-8618557	None:intergenic	35.0%
!!	TTAAGGTATTGAGGATTTGG+TGG	-	chr5_3:8618660-8618679	None:intergenic	35.0%
	ATTGAAAGTAGAAGGAGAAG+AGG	-	chr5_3:8618706-8618725	None:intergenic	35.0%
	TCAATCCTCAAAAACCTTCT+TGG	+	chr5_3:8618721-8618740	Msa0796560:CDS	35.0%
!	TCATTCCAAGAAGGTTTTTG+AGG	-	chr5_3:8618729-8618748	None:intergenic	35.0%
	ATCTGGTCCAATTACAACTT+TGG	+	chr5_3:8618789-8618808	Msa0796560:intron	35.0%
	TTTACCACTCACACTTGAAA+CGG	-	chr5_3:8619103-8619122	None:intergenic	35.0%
	ATGGAAAGAGATTGTTCAAG+AGG	+	chr5_3:8619159-8619178	Msa0796560:CDS	35.0%
	ATTGGCACTTGCAAAACAAT+TGG	+	chr5_3:8619389-8619408	Msa0796560:CDS	35.0%
	TTGGCACTTGCAAAACAATT+GGG	+	chr5_3:8619390-8619409	Msa0796560:CDS	35.0%
	CGATGAATTTGTCGAAATCA+CGG	-	chr5_3:8619581-8619600	None:intergenic	35.0%
!	GAGATGCATGTTTTCATGTT+TGG	+	chr5_3:8619610-8619629	Msa0796560:intron	35.0%
	TTTCATGTTTGGTATCACGT+TGG	+	chr5_3:8619621-8619640	Msa0796560:intron	35.0%
	CATTTGCATGTAGAATTGTG+GGG	-	chr5_3:8619891-8619910	None:intergenic	35.0%
	GTCATTTGCATGTAGAATTG+TGG	-	chr5_3:8619893-8619912	None:intergenic	35.0%
	GTACAAGTTAAGATCTAGGA+CGG	-	chr5_3:8620087-8620106	None:intergenic	35.0%
!!	GTCCTAGATCTTAACTTGTA+CGG	+	chr5_3:8620086-8620105	Msa0796560:exon	35.0%
	ATCCGTACAAGTTAAGATCT+AGG	-	chr5_3:8620091-8620110	None:intergenic	35.0%
!!	TGGCTTAATTGCTTTAGGAT+TGG	+	chr5_3:8620438-8620457	Msa0796560:three_prime_UTR	35.0%
	CAATTGCTGGGACTAATTAT+GGG	+	chr5_3:8620528-8620547	Msa0796560:three_prime_UTR	35.0%
!!!	TTGGTTGGGTGAGAATTTTT+TGG	+	chr5_3:8620551-8620570	Msa0796560:three_prime_UTR	35.0%
	ATTGGAAGGCTAAATCAATG+GGG	-	chr5_3:8620664-8620683	None:intergenic	35.0%
	ATAGAAAGGAGAGAAAATGG+GGG	-	chr5_3:8618407-8618426	None:intergenic	35.0%
	GTTGTGGGGAATATATAGAA+AGG	-	chr5_3:8618421-8618440	None:intergenic	35.0%
	ATGATTATAATGAAGTGGGG+AGG	-	chr5_3:8618448-8618467	None:intergenic	35.0%
!!!	TTGTTTTTTGAAGGAGGTTG+GGG	-	chr5_3:8618532-8618551	None:intergenic	35.0%
!!!	CTTTGTTTTTTGAAGGAGGT+TGG	-	chr5_3:8618534-8618553	None:intergenic	35.0%
!!!	AGTGCTTTGTTTTTTGAAGG+AGG	-	chr5_3:8618538-8618557	None:intergenic	35.0%
!!	TTAAGGTATTGAGGATTTGG+TGG	-	chr5_3:8618660-8618679	None:intergenic	35.0%
	ATTGAAAGTAGAAGGAGAAG+AGG	-	chr5_3:8618706-8618725	None:intergenic	35.0%
	TCAATCCTCAAAAACCTTCT+TGG	+	chr5_3:8618721-8618740	Msa0796560:CDS	35.0%
!	TCATTCCAAGAAGGTTTTTG+AGG	-	chr5_3:8618729-8618748	None:intergenic	35.0%
	ATCTGGTCCAATTACAACTT+TGG	+	chr5_3:8618789-8618808	Msa0796560:intron	35.0%
	TTTACCACTCACACTTGAAA+CGG	-	chr5_3:8619103-8619122	None:intergenic	35.0%
	ATGGAAAGAGATTGTTCAAG+AGG	+	chr5_3:8619159-8619178	Msa0796560:CDS	35.0%
	ATTGGCACTTGCAAAACAAT+TGG	+	chr5_3:8619389-8619408	Msa0796560:CDS	35.0%
	TTGGCACTTGCAAAACAATT+GGG	+	chr5_3:8619390-8619409	Msa0796560:CDS	35.0%
	CGATGAATTTGTCGAAATCA+CGG	-	chr5_3:8619581-8619600	None:intergenic	35.0%
!	GAGATGCATGTTTTCATGTT+TGG	+	chr5_3:8619610-8619629	Msa0796560:intron	35.0%
	TTTCATGTTTGGTATCACGT+TGG	+	chr5_3:8619621-8619640	Msa0796560:intron	35.0%
	CATTTGCATGTAGAATTGTG+GGG	-	chr5_3:8619891-8619910	None:intergenic	35.0%
	GTCATTTGCATGTAGAATTG+TGG	-	chr5_3:8619893-8619912	None:intergenic	35.0%
	GTACAAGTTAAGATCTAGGA+CGG	-	chr5_3:8620087-8620106	None:intergenic	35.0%
!!	GTCCTAGATCTTAACTTGTA+CGG	+	chr5_3:8620086-8620105	Msa0796560:exon	35.0%
	ATCCGTACAAGTTAAGATCT+AGG	-	chr5_3:8620091-8620110	None:intergenic	35.0%
!!	TGGCTTAATTGCTTTAGGAT+TGG	+	chr5_3:8620438-8620457	Msa0796560:three_prime_UTR	35.0%
	CAATTGCTGGGACTAATTAT+GGG	+	chr5_3:8620528-8620547	Msa0796560:three_prime_UTR	35.0%
!!!	TTGGTTGGGTGAGAATTTTT+TGG	+	chr5_3:8620551-8620570	Msa0796560:three_prime_UTR	35.0%
	ATTGGAAGGCTAAATCAATG+GGG	-	chr5_3:8620664-8620683	None:intergenic	35.0%
	TAGAAAGGAGAGAAAATGGG+GGG	-	chr5_3:8618406-8618425	None:intergenic	40.0%
	AGAGAGAGAGAGATTATGGA+TGG	-	chr5_3:8618471-8618490	None:intergenic	40.0%
	TGAGAGAGAGAGAGAGATTA+TGG	-	chr5_3:8618475-8618494	None:intergenic	40.0%
!!!	TGTTTTTTGAAGGAGGTTGG+GGG	-	chr5_3:8618531-8618550	None:intergenic	40.0%
	TTTGAGGGAAGCTCAAACTT+AGG	-	chr5_3:8618635-8618654	None:intergenic	40.0%
!!!	GAGGATTTGGTGGATTTTGA+GGG	-	chr5_3:8618650-8618669	None:intergenic	40.0%
!!!	TGAGGATTTGGTGGATTTTG+AGG	-	chr5_3:8618651-8618670	None:intergenic	40.0%
	ATCCTTCCATTCTCTAGATC+TGG	+	chr5_3:8618772-8618791	Msa0796560:intron	40.0%
	ATTGGACCAGATCTAGAGAA+TGG	-	chr5_3:8618781-8618800	None:intergenic	40.0%
	TTTACATGCAGATCGGGATT+CGG	+	chr5_3:8618966-8618985	Msa0796560:intron	40.0%
	AGACATGCAGAATCGAAGAA+CGG	+	chr5_3:8618989-8619008	Msa0796560:CDS	40.0%
	AGAAGCGAAAGAGAAGTTAC+AGG	+	chr5_3:8619123-8619142	Msa0796560:CDS	40.0%
	TACAGGTGAAGATCTTGACA+TGG	+	chr5_3:8619140-8619159	Msa0796560:CDS	40.0%
	AAGAAGACGCTGAAACTTCA+AGG	+	chr5_3:8619193-8619212	Msa0796560:CDS	40.0%
!	GTGCTAGACAAGTTGAAGTT+TGG	+	chr5_3:8619418-8619437	Msa0796560:CDS	40.0%
	GGTTTCAAAATCGTAGAGCA+AGG	+	chr5_3:8619439-8619458	Msa0796560:CDS	40.0%
	TCAAAGGTCCTATGTTGGAT+AGG	-	chr5_3:8620058-8620077	None:intergenic	40.0%
	GTGTATCAAAGGTCCTATGT+TGG	-	chr5_3:8620063-8620082	None:intergenic	40.0%
!	TTGACCCCATTGTCTTCTTT+TGG	+	chr5_3:8620256-8620275	Msa0796560:three_prime_UTR	40.0%
	TTTGAAGATACGGCAATTGC+TGG	+	chr5_3:8620515-8620534	Msa0796560:three_prime_UTR	40.0%
	TTGAAGATACGGCAATTGCT+GGG	+	chr5_3:8620516-8620535	Msa0796560:three_prime_UTR	40.0%
	GCAATTGCTGGGACTAATTA+TGG	+	chr5_3:8620527-8620546	Msa0796560:three_prime_UTR	40.0%
!!	GGACTAATTATGGGTTGGTT+GGG	+	chr5_3:8620537-8620556	Msa0796560:three_prime_UTR	40.0%
!!!	GTTGGGTGAGAATTTTTTGG+TGG	+	chr5_3:8620554-8620573	Msa0796560:three_prime_UTR	40.0%
	TCAAGAATTTAGGGGCCTTA+TGG	+	chr5_3:8620636-8620655	Msa0796560:three_prime_UTR	40.0%
!	CAAGAATTTAGGGGCCTTAT+GGG	+	chr5_3:8620637-8620656	Msa0796560:three_prime_UTR	40.0%
	TAAATCAATGGGGACCCATA+AGG	-	chr5_3:8620654-8620673	None:intergenic	40.0%
	TAGAAAGGAGAGAAAATGGG+GGG	-	chr5_3:8618406-8618425	None:intergenic	40.0%
	AGAGAGAGAGAGATTATGGA+TGG	-	chr5_3:8618471-8618490	None:intergenic	40.0%
	TGAGAGAGAGAGAGAGATTA+TGG	-	chr5_3:8618475-8618494	None:intergenic	40.0%
!!!	TGTTTTTTGAAGGAGGTTGG+GGG	-	chr5_3:8618531-8618550	None:intergenic	40.0%
	TTTGAGGGAAGCTCAAACTT+AGG	-	chr5_3:8618635-8618654	None:intergenic	40.0%
!!!	GAGGATTTGGTGGATTTTGA+GGG	-	chr5_3:8618650-8618669	None:intergenic	40.0%
!!!	TGAGGATTTGGTGGATTTTG+AGG	-	chr5_3:8618651-8618670	None:intergenic	40.0%
	ATCCTTCCATTCTCTAGATC+TGG	+	chr5_3:8618772-8618791	Msa0796560:intron	40.0%
	ATTGGACCAGATCTAGAGAA+TGG	-	chr5_3:8618781-8618800	None:intergenic	40.0%
	TTTACATGCAGATCGGGATT+CGG	+	chr5_3:8618966-8618985	Msa0796560:intron	40.0%
	AGACATGCAGAATCGAAGAA+CGG	+	chr5_3:8618989-8619008	Msa0796560:CDS	40.0%
	AGAAGCGAAAGAGAAGTTAC+AGG	+	chr5_3:8619123-8619142	Msa0796560:CDS	40.0%
	TACAGGTGAAGATCTTGACA+TGG	+	chr5_3:8619140-8619159	Msa0796560:CDS	40.0%
	AAGAAGACGCTGAAACTTCA+AGG	+	chr5_3:8619193-8619212	Msa0796560:CDS	40.0%
!	GTGCTAGACAAGTTGAAGTT+TGG	+	chr5_3:8619418-8619437	Msa0796560:CDS	40.0%
	GGTTTCAAAATCGTAGAGCA+AGG	+	chr5_3:8619439-8619458	Msa0796560:CDS	40.0%
	TCAAAGGTCCTATGTTGGAT+AGG	-	chr5_3:8620058-8620077	None:intergenic	40.0%
	GTGTATCAAAGGTCCTATGT+TGG	-	chr5_3:8620063-8620082	None:intergenic	40.0%
!	TTGACCCCATTGTCTTCTTT+TGG	+	chr5_3:8620256-8620275	Msa0796560:three_prime_UTR	40.0%
	TTTGAAGATACGGCAATTGC+TGG	+	chr5_3:8620515-8620534	Msa0796560:three_prime_UTR	40.0%
	TTGAAGATACGGCAATTGCT+GGG	+	chr5_3:8620516-8620535	Msa0796560:three_prime_UTR	40.0%
	GCAATTGCTGGGACTAATTA+TGG	+	chr5_3:8620527-8620546	Msa0796560:three_prime_UTR	40.0%
!!	GGACTAATTATGGGTTGGTT+GGG	+	chr5_3:8620537-8620556	Msa0796560:three_prime_UTR	40.0%
!!!	GTTGGGTGAGAATTTTTTGG+TGG	+	chr5_3:8620554-8620573	Msa0796560:three_prime_UTR	40.0%
	TCAAGAATTTAGGGGCCTTA+TGG	+	chr5_3:8620636-8620655	Msa0796560:three_prime_UTR	40.0%
!	CAAGAATTTAGGGGCCTTAT+GGG	+	chr5_3:8620637-8620656	Msa0796560:three_prime_UTR	40.0%
	TAAATCAATGGGGACCCATA+AGG	-	chr5_3:8620654-8620673	None:intergenic	40.0%
	TATAATGAAGTGGGGAGGCA+GGG	-	chr5_3:8618443-8618462	None:intergenic	45.0%
	TTATAATGAAGTGGGGAGGC+AGG	-	chr5_3:8618444-8618463	None:intergenic	45.0%
	GACCAGATCTAGAGAATGGA+AGG	-	chr5_3:8618777-8618796	None:intergenic	45.0%
	TCGATTCCTCGGAGAAGTAA+AGG	-	chr5_3:8619015-8619034	None:intergenic	45.0%
	TCCGAGGAATCGATGTGAAT+CGG	+	chr5_3:8619022-8619041	Msa0796560:CDS	45.0%
!!	ACCGATTCACATCGATTCCT+CGG	-	chr5_3:8619026-8619045	None:intergenic	45.0%
	GATGTGAATCGGTTACCTTC+TGG	+	chr5_3:8619033-8619052	Msa0796560:CDS	45.0%
	TCTTCACAATCAGCACCAGA+AGG	-	chr5_3:8619051-8619070	None:intergenic	45.0%
	GCTGATTGTGAAGAAGAAGC+AGG	+	chr5_3:8619057-8619076	Msa0796560:CDS	45.0%
!!	ACACTTGAAACGGTGCTGTT+TGG	-	chr5_3:8619093-8619112	None:intergenic	45.0%
	AAAGATATCCGGTGCATGTC+TGG	+	chr5_3:8619510-8619529	Msa0796560:intron	45.0%
	CACATGGTAAGAGTTGTTGG+TGG	-	chr5_3:8619917-8619936	None:intergenic	45.0%
!	TCTAGGACGGAGTGTATCAA+AGG	-	chr5_3:8620074-8620093	None:intergenic	45.0%
	TGCTGGGACTAATTATGGGT+TGG	+	chr5_3:8620532-8620551	Msa0796560:three_prime_UTR	45.0%
!!	GGGACTAATTATGGGTTGGT+TGG	+	chr5_3:8620536-8620555	Msa0796560:three_prime_UTR	45.0%
	TATAATGAAGTGGGGAGGCA+GGG	-	chr5_3:8618443-8618462	None:intergenic	45.0%
	TTATAATGAAGTGGGGAGGC+AGG	-	chr5_3:8618444-8618463	None:intergenic	45.0%
	GACCAGATCTAGAGAATGGA+AGG	-	chr5_3:8618777-8618796	None:intergenic	45.0%
	TCGATTCCTCGGAGAAGTAA+AGG	-	chr5_3:8619015-8619034	None:intergenic	45.0%
	TCCGAGGAATCGATGTGAAT+CGG	+	chr5_3:8619022-8619041	Msa0796560:CDS	45.0%
!!	ACCGATTCACATCGATTCCT+CGG	-	chr5_3:8619026-8619045	None:intergenic	45.0%
	GATGTGAATCGGTTACCTTC+TGG	+	chr5_3:8619033-8619052	Msa0796560:CDS	45.0%
	TCTTCACAATCAGCACCAGA+AGG	-	chr5_3:8619051-8619070	None:intergenic	45.0%
	GCTGATTGTGAAGAAGAAGC+AGG	+	chr5_3:8619057-8619076	Msa0796560:CDS	45.0%
!!	ACACTTGAAACGGTGCTGTT+TGG	-	chr5_3:8619093-8619112	None:intergenic	45.0%
	AAAGATATCCGGTGCATGTC+TGG	+	chr5_3:8619510-8619529	Msa0796560:intron	45.0%
	CACATGGTAAGAGTTGTTGG+TGG	-	chr5_3:8619917-8619936	None:intergenic	45.0%
!	TCTAGGACGGAGTGTATCAA+AGG	-	chr5_3:8620074-8620093	None:intergenic	45.0%
	TGCTGGGACTAATTATGGGT+TGG	+	chr5_3:8620532-8620551	Msa0796560:three_prime_UTR	45.0%
!!	GGGACTAATTATGGGTTGGT+TGG	+	chr5_3:8620536-8620555	Msa0796560:three_prime_UTR	45.0%
!!!	AAATTATATTTTGTTTTTTT+AGG	+	chr5_3:8619324-8619343	Msa0796560:intron	5.0%
!!!	AAATTATATTTTGTTTTTTT+AGG	+	chr5_3:8619324-8619343	Msa0796560:intron	5.0%
	AGAGAAAATGGGGGGTAGTG+GGG	-	chr5_3:8618398-8618417	None:intergenic	50.0%
	GAGAGAAAATGGGGGGTAGT+GGG	-	chr5_3:8618399-8618418	None:intergenic	50.0%
!	AGCACCGTTTCAAGTGTGAG+TGG	+	chr5_3:8619096-8619115	Msa0796560:CDS	50.0%
	CTGTGATACCAGACATGCAC+CGG	-	chr5_3:8619521-8619540	None:intergenic	50.0%
	GGGCACATGGTAAGAGTTGT+TGG	-	chr5_3:8619920-8619939	None:intergenic	50.0%
	ACAGCAACACGCTCACAAGA+GGG	-	chr5_3:8619941-8619960	None:intergenic	50.0%
	AACAGCAACACGCTCACAAG+AGG	-	chr5_3:8619942-8619961	None:intergenic	50.0%
	GGAAATGGACGTGGGTGATT+TGG	-	chr5_3:8620010-8620029	None:intergenic	50.0%
	TCCATTTCCTGTGGGACCAT+GGG	+	chr5_3:8620021-8620040	Msa0796560:CDS	50.0%
	ATGTTGGATAGGAGCAGCTG+TGG	-	chr5_3:8620047-8620066	None:intergenic	50.0%
	CAGCTGCTCCTATCCAACAT+AGG	+	chr5_3:8620047-8620066	Msa0796560:CDS	50.0%
	AGAGAAAATGGGGGGTAGTG+GGG	-	chr5_3:8618398-8618417	None:intergenic	50.0%
	GAGAGAAAATGGGGGGTAGT+GGG	-	chr5_3:8618399-8618418	None:intergenic	50.0%
!	AGCACCGTTTCAAGTGTGAG+TGG	+	chr5_3:8619096-8619115	Msa0796560:CDS	50.0%
	CTGTGATACCAGACATGCAC+CGG	-	chr5_3:8619521-8619540	None:intergenic	50.0%
	GGGCACATGGTAAGAGTTGT+TGG	-	chr5_3:8619920-8619939	None:intergenic	50.0%
	ACAGCAACACGCTCACAAGA+GGG	-	chr5_3:8619941-8619960	None:intergenic	50.0%
	AACAGCAACACGCTCACAAG+AGG	-	chr5_3:8619942-8619961	None:intergenic	50.0%
	GGAAATGGACGTGGGTGATT+TGG	-	chr5_3:8620010-8620029	None:intergenic	50.0%
	TCCATTTCCTGTGGGACCAT+GGG	+	chr5_3:8620021-8620040	Msa0796560:CDS	50.0%
	ATGTTGGATAGGAGCAGCTG+TGG	-	chr5_3:8620047-8620066	None:intergenic	50.0%
	CAGCTGCTCCTATCCAACAT+AGG	+	chr5_3:8620047-8620066	Msa0796560:CDS	50.0%
	GGAGAGAAAATGGGGGGTAG+TGG	-	chr5_3:8618400-8618419	None:intergenic	55.0%
	TTTGAAGGAGGTTGGGGGAG+AGG	-	chr5_3:8618526-8618545	None:intergenic	55.0%
	GAACGGCCTTTACTTCTCCG+AGG	+	chr5_3:8619006-8619025	Msa0796560:CDS	55.0%
	CAGCAACACGCTCACAAGAG+GGG	-	chr5_3:8619940-8619959	None:intergenic	55.0%
	GCAGCATCAACGGCAGATGA+TGG	-	chr5_3:8619965-8619984	None:intergenic	55.0%
!	CGTGGGTGATTTGGAGCCAT+AGG	-	chr5_3:8620001-8620020	None:intergenic	55.0%
	TCACCCACGTCCATTTCCTG+TGG	+	chr5_3:8620012-8620031	Msa0796560:CDS	55.0%
	CACCCACGTCCATTTCCTGT+GGG	+	chr5_3:8620013-8620032	Msa0796560:CDS	55.0%
	GTCCCACAGGAAATGGACGT+GGG	-	chr5_3:8620018-8620037	None:intergenic	55.0%
	GTCCATTTCCTGTGGGACCA+TGG	+	chr5_3:8620020-8620039	Msa0796560:CDS	55.0%
	GGAGAGAAAATGGGGGGTAG+TGG	-	chr5_3:8618400-8618419	None:intergenic	55.0%
	TTTGAAGGAGGTTGGGGGAG+AGG	-	chr5_3:8618526-8618545	None:intergenic	55.0%
	GAACGGCCTTTACTTCTCCG+AGG	+	chr5_3:8619006-8619025	Msa0796560:CDS	55.0%
	CAGCAACACGCTCACAAGAG+GGG	-	chr5_3:8619940-8619959	None:intergenic	55.0%
	GCAGCATCAACGGCAGATGA+TGG	-	chr5_3:8619965-8619984	None:intergenic	55.0%
!	CGTGGGTGATTTGGAGCCAT+AGG	-	chr5_3:8620001-8620020	None:intergenic	55.0%
	TCACCCACGTCCATTTCCTG+TGG	+	chr5_3:8620012-8620031	Msa0796560:CDS	55.0%
	CACCCACGTCCATTTCCTGT+GGG	+	chr5_3:8620013-8620032	Msa0796560:CDS	55.0%
	GTCCCACAGGAAATGGACGT+GGG	-	chr5_3:8620018-8620037	None:intergenic	55.0%
	GTCCATTTCCTGTGGGACCA+TGG	+	chr5_3:8620020-8620039	Msa0796560:CDS	55.0%
!!	AAATGGGGGGTAGTGGGGAG+TGG	-	chr5_3:8618393-8618412	None:intergenic	60.0%
	AAGTGGGGAGGCAGGGTTGT+GGG	-	chr5_3:8618436-8618455	None:intergenic	60.0%
!	ACGCTCACAAGAGGGGCACA+TGG	-	chr5_3:8619933-8619952	None:intergenic	60.0%
	ACGACGCGTGGCAGCATCAA+CGG	-	chr5_3:8619975-8619994	None:intergenic	60.0%
	TGCCACGCGTCGTCATCCTA+TGG	+	chr5_3:8619982-8620001	Msa0796560:CDS	60.0%
	AGCCATAGGATGACGACGCG+TGG	-	chr5_3:8619987-8620006	None:intergenic	60.0%
	GGTCCCACAGGAAATGGACG+TGG	-	chr5_3:8620019-8620038	None:intergenic	60.0%
	GCCCATGGTCCCACAGGAAA+TGG	-	chr5_3:8620025-8620044	None:intergenic	60.0%
	ATAGGAGCAGCTGTGGCCCA+TGG	-	chr5_3:8620040-8620059	None:intergenic	60.0%
!!	AAATGGGGGGTAGTGGGGAG+TGG	-	chr5_3:8618393-8618412	None:intergenic	60.0%
	AAGTGGGGAGGCAGGGTTGT+GGG	-	chr5_3:8618436-8618455	None:intergenic	60.0%
!	ACGCTCACAAGAGGGGCACA+TGG	-	chr5_3:8619933-8619952	None:intergenic	60.0%
	ACGACGCGTGGCAGCATCAA+CGG	-	chr5_3:8619975-8619994	None:intergenic	60.0%
	TGCCACGCGTCGTCATCCTA+TGG	+	chr5_3:8619982-8620001	Msa0796560:CDS	60.0%
	AGCCATAGGATGACGACGCG+TGG	-	chr5_3:8619987-8620006	None:intergenic	60.0%
	GGTCCCACAGGAAATGGACG+TGG	-	chr5_3:8620019-8620038	None:intergenic	60.0%
	GCCCATGGTCCCACAGGAAA+TGG	-	chr5_3:8620025-8620044	None:intergenic	60.0%
	ATAGGAGCAGCTGTGGCCCA+TGG	-	chr5_3:8620040-8620059	None:intergenic	60.0%
	AGTGGGGAGGCAGGGTTGTG+GGG	-	chr5_3:8618435-8618454	None:intergenic	65.0%
	GAAGTGGGGAGGCAGGGTTG+TGG	-	chr5_3:8618437-8618456	None:intergenic	65.0%
	AGTGGGGAGGCAGGGTTGTG+GGG	-	chr5_3:8618435-8618454	None:intergenic	65.0%
	GAAGTGGGGAGGCAGGGTTG+TGG	-	chr5_3:8618437-8618456	None:intergenic	65.0%
	GCTGTGGCCCATGGTCCCAC+AGG	-	chr5_3:8620031-8620050	None:intergenic	70.0%
	GCTGTGGCCCATGGTCCCAC+AGG	-	chr5_3:8620031-8620050	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	8618356	8620698	8618356	ID=Msa0796560;Name=Msa0796560
chr5_3	mRNA	8618356	8620698	8618356	ID=Msa0796560-mRNA-1;Parent=Msa0796560;Name=Msa0796560-mRNA-1;_AED=0.11;_eAED=0.11;_QI=244\|1\|1\|1\|1\|1\|4\|599\|296
chr5_3	exon	8618356	8618765	8618356	ID=Msa0796560-mRNA-1:exon:3627;Parent=Msa0796560-mRNA-1
chr5_3	exon	8618977	8619290	8618977	ID=Msa0796560-mRNA-1:exon:3628;Parent=Msa0796560-mRNA-1
chr5_3	exon	8619381	8619460	8619381	ID=Msa0796560-mRNA-1:exon:3629;Parent=Msa0796560-mRNA-1
chr5_3	exon	8619769	8620698	8619769	ID=Msa0796560-mRNA-1:exon:3630;Parent=Msa0796560-mRNA-1
chr5_3	five_prime_UTR	8618356	8618599	8618356	ID=Msa0796560-mRNA-1:five_prime_utr;Parent=Msa0796560-mRNA-1
chr5_3	CDS	8618600	8618765	8618600	ID=Msa0796560-mRNA-1:cds;Parent=Msa0796560-mRNA-1
chr5_3	CDS	8618977	8619290	8618977	ID=Msa0796560-mRNA-1:cds;Parent=Msa0796560-mRNA-1
chr5_3	CDS	8619381	8619460	8619381	ID=Msa0796560-mRNA-1:cds;Parent=Msa0796560-mRNA-1
chr5_3	CDS	8619769	8620099	8619769	ID=Msa0796560-mRNA-1:cds;Parent=Msa0796560-mRNA-1
chr5_3	three_prime_UTR	8620100	8620698	8620100	ID=Msa0796560-mRNA-1:three_prime_utr;Parent=Msa0796560-mRNA-1

Gene Sequence

>Msa0796560

ATGAGTATTGAAAAGGAAGATTTTGGTTTGAGCCTAAGTTTGAGCTTCCCTCAAAATCCACCAAATCCTCAATACCTTAATCTTATGTCTTCTTCAACTCATTCCTCTTCTCCTTCTACTTTCAATCCTCAAAAACCTTCTTGGAATGATGTTTTTACTTCTTCAGATCGGGATTCGGAGACATGCAGAATCGAAGAACGGCCTTTACTTCTCCGAGGAATCGATGTGAATCGGTTACCTTCTGGTGCTGATTGTGAAGAAGAAGCAGGAGTTTCATCACCAAACAGCACCGTTTCAAGTGTGAGTGGTAAAAGAAGCGAAAGAGAAGTTACAGGTGAAGATCTTGACATGGAAAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGACGCTGAAACTTCAAGGAAAAAACTTAGACTCACCAAAGACCAATCAATTATTCTCGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAATTGGCACTTGCAAAACAATTGGGACTTCGTGCTAGACAAGTTGAAGTTTGGTTTCAAAATCGTAGAGCAAGGACTAAGTTGAAGCAAACAGAAGTAGACTGTGAGTTTTTGAAAAGATGTTGTGAGAATCTAACGGATGAAAATAGACGGTTACAAAAGGAAGTGCAAGAGTTAAGAGCATTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCAACAACTCTTACCATGTGCCCCTCTTGTGAGCGTGTTGCTGTTCCATCATCTGCCGTTGATGCTGCCACGCGTCGTCATCCTATGGCTCCAAATCACCCACGTCCATTTCCTGTGGGACCATGGGCCACAGCTGCTCCTATCCAACATAGGACCTTTGATACACTCCGTCCTAGATCTTAA

Protein sequence

>Msa0796560

MSIEKEDFGLSLSLSFPQNPPNPQYLNLMSSSTHSSSPSTFNPQKPSWNDVFTSSDRDSETCRIEERPLLLRGIDVNRLPSGADCEEEAGVSSPNSTVSSVSGKRSEREVTGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRRHPMAPNHPRPFPVGPWATAAPIQHRTFDTLRPRS*