AlfalfaGEDB | Msa0834010

M. sativa cultivar zhongmu-4 / Msa0834010

KEGG: K09338
GO: GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141
PFAM: PF04618.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834010	XP_003611347.1	98.311	296	5	0	1	296	1	296	0.0	598

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834010	sp\|Q05466\|HAT4_ARATH	65.101	298	88	7	1	296	1	284	5.54e-108	318

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834010	B7FJ62	98.311	296	5	0	1	296	1	296	0.0	598

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TFs/TRs:

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Gene ID	Type	Classification
Msa0834010	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0091910	Msa0834010	0.961345	1.356200e-119	-8.615850e-47
Msa0780470	Msa0834010	0.874728	5.382250e-68	-8.615850e-47
Msa0796560	Msa0834010	0.971249	7.229254e-133	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834010	MtrunA17_Chr5g0399491	98.311	296	5	0	1	296	1	296	0.0	598
Msa0834010	MtrunA17_Chr4g0055851	72.333	300	54	9	1	293	2	279	2.57e-138	392
Msa0834010	MtrunA17_Chr8g0335131	56.958	309	101	10	4	288	3	303	3.00e-94	281
Msa0834010	MtrunA17_Chr7g0258831	64.516	186	58	4	72	250	89	273	9.58e-68	213
Msa0834010	MtrunA17_Chr1g0175651	60.204	196	54	4	71	251	82	268	1.13e-66	210
Msa0834010	MtrunA17_Chr2g0308611	73.026	152	35	4	112	260	175	323	1.17e-65	209
Msa0834010	MtrunA17_Chr4g0054421	78.049	123	26	1	127	249	118	239	5.60e-61	194
Msa0834010	MtrunA17_Chr5g0400781	65.972	144	46	2	127	268	114	256	4.47e-60	192
Msa0834010	MtrunA17_Chr1g0151971	51.667	180	73	5	96	263	88	265	1.19e-51	171
Msa0834010	MtrunA17_Chr4g0044091	62.097	124	42	1	130	248	59	182	1.93e-45	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834010	AT4G16780.1	65.101	298	88	7	1	296	1	284	5.63e-109	318
Msa0834010	AT5G47370.1	59.936	312	80	13	1	296	1	283	7.82e-107	312
Msa0834010	AT4G17460.1	59.032	310	85	11	1	296	1	282	2.93e-105	308
Msa0834010	AT3G60390.1	59.060	298	84	14	17	287	23	309	1.33e-91	275
Msa0834010	AT2G44910.1	53.165	316	115	12	4	288	3	316	3.19e-84	256
Msa0834010	AT5G06710.1	61.421	197	64	6	91	277	135	329	2.91e-67	213
Msa0834010	AT4G37790.1	59.358	187	57	5	105	273	86	271	3.56e-62	198
Msa0834010	AT2G22800.1	72.308	130	32	2	123	249	97	225	2.69e-58	188
Msa0834010	AT2G01430.1	52.299	174	65	4	92	256	95	259	5.51e-44	151
Msa0834010	AT1G70920.1	60.976	123	37	2	135	257	68	179	8.85e-38	133

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Find 118 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTAGTTCAAGAATTT+AGG	0.141123	5_4:+7073421	Msa0834010:three_prime_UTR
AAATGAAGTACATATGATGG+AGG	0.610594	5_4:+7072842	Msa0834010:three_prime_UTR
AACAGCAACACGCTCACAAG+AGG	0.612400	5_4:-7072426	None:intergenic
AACATTAGTTCAAGAATTTA+GGG	0.293524	5_4:+7073422	Msa0834010:three_prime_UTR
AAGAAGACGCTGAAACTTCA+AGG	0.402562	5_4:+7071680	Msa0834010:CDS
AAGATGTTGTGAGAATCTAA+CGG	0.732801	5_4:+7072298	Msa0834010:CDS
AAGTGGGGAGGCAGGGTTGT+GGG	0.366973	5_4:-7070924	None:intergenic
ACACTTGAAACGGTGCTGTT+TGG	0.443597	5_4:-7071577	None:intergenic
ACAGCAACACGCTCACAAGA+GGG	0.586849	5_4:-7072425	None:intergenic
ACATAGGTGGCATTTAACAT+GGG	0.623993	5_4:-7072977	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGACTTGACATAAAGTTA+TGG	+	chr5_4:7070849-7070868	Msa0834010:five_prime_UTR	30.0%
TATAGAAAGGAGAGAAAATG+GGG	-	chr5_4:7070899-7070918	None:intergenic	30.0%
TGGATGATTATAATGAAGTG+GGG	-	chr5_4:7070942-7070961	None:intergenic	30.0%
GATGGATGATTATAATGAAG+TGG	-	chr5_4:7070944-7070963	None:intergenic	30.0%
GTAAAAACATCATTCCAAGA+AGG	-	chr5_4:7071225-7071244	None:intergenic	30.0%
ATAGATTACAGAGTAAAGGA+AGG	-	chr5_4:7071363-7071382	None:intergenic	30.0%
TCTCTTCGAGAATAATTGAT+TGG	-	chr5_4:7071729-7071748	None:intergenic	30.0%
AAGATGTTGTGAGAATCTAA+CGG	+	chr5_4:7072298-7072317	Msa0834010:CDS	30.0%
TGAAAATAGACGGTTACAAA+AGG	+	chr5_4:7072322-7072341	Msa0834010:CDS	30.0%
TCATTTGCATGTAGAATTGT+GGG	-	chr5_4:7072379-7072398	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	7070847	7073442	7070847	ID=Msa0834010;Name=Msa0834010
chr5_4	mRNA	7070847	7073442	7070847	ID=Msa0834010-mRNA-1;Parent=Msa0834010;Name=Msa0834010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=240\|1\|1\|1\|0.75\|0.6\|5\|702\|296
chr5_4	exon	7070847	7071252	7070847	ID=Msa0834010-mRNA-1:exon:3077;Parent=Msa0834010-mRNA-1
chr5_4	exon	7071464	7071777	7071464	ID=Msa0834010-mRNA-1:exon:3078;Parent=Msa0834010-mRNA-1
chr5_4	exon	7071867	7071946	7071867	ID=Msa0834010-mRNA-1:exon:3079;Parent=Msa0834010-mRNA-1
chr5_4	exon	7072256	7073016	7072256	ID=Msa0834010-mRNA-1:exon:3080;Parent=Msa0834010-mRNA-1
chr5_4	exon	7073171	7073442	7073171	ID=Msa0834010-mRNA-1:exon:3081;Parent=Msa0834010-mRNA-1
chr5_4	five_prime_UTR	7070847	7071086	7070847	ID=Msa0834010-mRNA-1:five_prime_utr;Parent=Msa0834010-mRNA-1
chr5_4	CDS	7071087	7071252	7071087	ID=Msa0834010-mRNA-1:cds;Parent=Msa0834010-mRNA-1
chr5_4	CDS	7071464	7071777	7071464	ID=Msa0834010-mRNA-1:cds;Parent=Msa0834010-mRNA-1
chr5_4	CDS	7071867	7071946	7071867	ID=Msa0834010-mRNA-1:cds;Parent=Msa0834010-mRNA-1
chr5_4	CDS	7072256	7072586	7072256	ID=Msa0834010-mRNA-1:cds;Parent=Msa0834010-mRNA-1
chr5_4	three_prime_UTR	7072587	7073016	7072587	ID=Msa0834010-mRNA-1:three_prime_utr;Parent=Msa0834010-mRNA-1
chr5_4	three_prime_UTR	7073171	7073442	7073171	ID=Msa0834010-mRNA-1:three_prime_utr;Parent=Msa0834010-mRNA-1

Gene Sequence

>Msa0834010

ATGAGTATTGAAAAGGAAGATTTTGGTTTGAGCCTAAGTTTGAGCTTCCCTCAAAATCCACCAAATCCTCAATACCTTAATCTTATGTCTTCTTCAACTCATTCCTCTTCTCCTTCTACTTTCAATCCTCAAAAACCTTCTTGGAATGATGTTTTTACTTCTTCAGATCGGGATTCGGAGACATGCAGAATCGAAGAACGGCCTTTACTTCTCCGAGGAATCGATGTGAATCGGTTACCTTCTGGTGCTGATTGTGAAGAAGAAGCAGGAGTTTCATCACCAAACAGCACCGTTTCAAGTGTGAGTGGTAAAAGAAGCGAAAGAGAAGTTACAGGTGAAGATCTTGACATGGAAAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGACGCTGAAACTTCAAGGAAAAAACTTAGACTCACCAAAGACCAATCAATTATTCTCGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAATTGGCACTTGCAAAACAATTGGGACTTCGTGCTAGACAAGTTGAAGTTTGGTTTCAAAATCGTAGAGCAAGGACTAAGTTGAAGCAAACAGAAGTAGACTGTGAGTTTTTGAAAAGATGTTGTGAGAATCTAACGGATGAAAATAGACGGTTACAAAAGGAAGTGCAAGAGTTAAGAGCATTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCAACAACTCTTACCATGTGCCCCTCTTGTGAGCGTGTTGCTGTTCCATCATCTGCCGTTGATGCTGCCACGCGTCGTCATCCTATGGCTCCAAATCACCCACGTCCATTTCCTGTGGGACCATGGGCCACAGCTGCTCCTATCCAACATAGGACCTTTGATACACTCCGTCCTAGATCTTAA

Protein sequence

>Msa0834010

MSIEKEDFGLSLSLSFPQNPPNPQYLNLMSSSTHSSSPSTFNPQKPSWNDVFTSSDRDSETCRIEERPLLLRGIDVNRLPSGADCEEEAGVSSPNSTVSSVSGKRSEREVTGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRRHPMAPNHPRPFPVGPWATAAPIQHRTFDTLRPRS*