Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796940 | XP_024639117.1 | 79.255 | 188 | 28 | 3 | 1 | 181 | 1 | 184 | 2.61e-97 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796940 | sp|Q84R94|TI10A_ORYSJ | 42.466 | 146 | 67 | 4 | 36 | 168 | 73 | 214 | 1.36e-27 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796940 | A0A396HSW0 | 90.647 | 139 | 12 | 1 | 31 | 168 | 6 | 144 | 7.73e-88 | 263 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0796940 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0796940 | Msa1009020 | 0.815491 | 8.994675e-52 | -8.615850e-47 |
| Msa0796940 | Msa1025830 | 0.815689 | 8.127865e-52 | -8.615850e-47 |
| Msa0796940 | Msa1101620 | 0.816398 | 5.644612e-52 | -8.615850e-47 |
| Msa0796940 | Msa1153170 | 0.803832 | 2.888362e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796940 | MtrunA17_Chr5g0399851 | 90.647 | 139 | 12 | 1 | 31 | 168 | 6 | 144 | 1.49e-91 | 263 |
| Msa0796940 | MtrunA17_Chr5g0399861 | 73.626 | 182 | 37 | 5 | 1 | 179 | 1 | 174 | 2.93e-90 | 261 |
| Msa0796940 | MtrunA17_Chr5g0399881 | 73.224 | 183 | 36 | 6 | 1 | 181 | 1 | 172 | 1.00e-86 | 252 |
| Msa0796940 | MtrunA17_Chr2g0301131 | 45.399 | 163 | 47 | 6 | 27 | 163 | 99 | 245 | 7.18e-36 | 125 |
| Msa0796940 | MtrunA17_Chr4g0070271 | 37.273 | 110 | 46 | 2 | 40 | 149 | 95 | 181 | 1.31e-18 | 79.3 |
| Msa0796940 | MtrunA17_Chr8g0344481 | 31.126 | 151 | 89 | 4 | 29 | 173 | 88 | 229 | 3.26e-14 | 68.2 |
| Msa0796940 | MtrunA17_Chr4g0069721 | 33.628 | 113 | 65 | 2 | 42 | 144 | 41 | 153 | 7.49e-13 | 63.5 |
| Msa0796940 | MtrunA17_Chr2g0302041 | 28.378 | 148 | 85 | 4 | 25 | 152 | 28 | 174 | 2.19e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796940 | AT1G19180.2 | 43.382 | 136 | 65 | 5 | 39 | 166 | 53 | 184 | 4.66e-26 | 99.0 |
| Msa0796940 | AT1G19180.1 | 43.382 | 136 | 65 | 5 | 39 | 166 | 119 | 250 | 1.99e-25 | 99.0 |
| Msa0796940 | AT1G19180.3 | 43.382 | 136 | 65 | 5 | 39 | 166 | 119 | 250 | 1.99e-25 | 99.0 |
| Msa0796940 | AT1G74950.1 | 38.406 | 138 | 71 | 4 | 39 | 164 | 112 | 247 | 5.42e-23 | 92.4 |
| Msa0796940 | AT1G74950.2 | 38.182 | 110 | 57 | 2 | 39 | 137 | 112 | 221 | 2.38e-17 | 76.6 |
| Msa0796940 | AT5G20900.1 | 36.719 | 128 | 69 | 5 | 32 | 148 | 41 | 167 | 6.79e-14 | 67.0 |
| Msa0796940 | AT1G17380.2 | 32.540 | 126 | 66 | 3 | 35 | 146 | 58 | 178 | 1.79e-13 | 66.6 |
| Msa0796940 | AT1G17380.1 | 30.000 | 150 | 86 | 3 | 11 | 146 | 63 | 207 | 1.89e-13 | 67.0 |
| Msa0796940 | AT1G72450.1 | 38.393 | 112 | 54 | 3 | 45 | 146 | 105 | 211 | 1.92e-13 | 67.0 |
| Msa0796940 | AT1G70700.2 | 35.577 | 104 | 62 | 3 | 46 | 145 | 119 | 221 | 1.16e-11 | 61.6 |
Find 50 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAAGAGGTTTCAAATTT+AGG | 0.093614 | 5_3:-8986439 | Msa0796940:CDS |
| TCATCCTCACCTGTTATTTA+TGG | 0.150258 | 5_3:-8986084 | Msa0796940:intron |
| TTACACTTCTTAATTAATTA+TGG | 0.165503 | 5_3:+8984555 | None:intergenic |
| CATGACATGAATTCATTAAT+TGG | 0.189235 | 5_3:+8984782 | None:intergenic |
| ATTCATTAATTGGCTTATTA+AGG | 0.221545 | 5_3:+8984792 | None:intergenic |
| TTAATTAAGAAGTGTAATTC+TGG | 0.287536 | 5_3:-8984549 | Msa0796940:three_prime_UTR |
| AGCTTCACTTCATCGGTTCT+TGG | 0.292747 | 5_3:-8985929 | Msa0796940:CDS |
| TATGAACTGGATCAATCATT+AGG | 0.302707 | 5_3:-8984672 | Msa0796940:three_prime_UTR |
| GTTGGGTTACTTGTTTGATA+TGG | 0.309920 | 5_3:+8984818 | None:intergenic |
| TACACTTCTTAATTAATTAT+GGG | 0.311234 | 5_3:+8984556 | None:intergenic |
| TTTCAAATTTAGGAAATTCC+AGG | 0.358166 | 5_3:-8986429 | Msa0796940:intron |
| GATATAAAGCTTTGTGTTGA+TGG | 0.362339 | 5_3:+8984436 | None:intergenic |
| TTGAGAGTTAGTAGTTCCTT+TGG | 0.375053 | 5_3:+8986194 | None:intergenic |
| ATTGGCTTATTAAGGTTTGT+TGG | 0.391845 | 5_3:+8984800 | None:intergenic |
| TTGGCTTATTAAGGTTTGTT+GGG | 0.406880 | 5_3:+8984801 | None:intergenic |
| TGGAGCTACATTCTGATTTG+TGG | 0.411283 | 5_3:+8984738 | None:intergenic |
| AACTATATATATCTATGAAC+TGG | 0.419301 | 5_3:-8984685 | Msa0796940:three_prime_UTR |
| TTGTTTGAGGAGGGTGAGAG+TGG | 0.423859 | 5_3:+8986590 | None:intergenic |
| AGTGAAGCTTTCCTAGTCAT+TGG | 0.425048 | 5_3:+8985943 | None:intergenic |
| ATGAACTGGATCAATCATTA+GGG | 0.427313 | 5_3:-8984671 | Msa0796940:three_prime_UTR |
| GAATTTCTAGCAAGAAATGA+TGG | 0.446507 | 5_3:+8986129 | None:intergenic |
| ATTGTCATTTGTGCACATCT+AGG | 0.463250 | 5_3:+8986291 | None:intergenic |
| TTCATCGGTTCTTGGAGAAA+AGG | 0.463618 | 5_3:-8985921 | Msa0796940:CDS |
| CATTCTGATTTGTGGTCTTG+TGG | 0.464643 | 5_3:+8984746 | None:intergenic |
| GAAGAATAGTTGTTTGAGGA+GGG | 0.475715 | 5_3:+8986581 | None:intergenic |
| GATTGAAGAATAGTTGTTTG+AGG | 0.479225 | 5_3:+8986577 | None:intergenic |
| TACAATGAAGCTATAAACTA+AGG | 0.483395 | 5_3:-8986616 | None:intergenic |
| TGATACTTGAAGAGAATTGT+TGG | 0.494345 | 5_3:+8986104 | None:intergenic |
| AGAGTTAGTAGTTCCTTTGG+AGG | 0.509053 | 5_3:+8986197 | None:intergenic |
| ATTCATGTCATGGCTCTCCT+TGG | 0.527756 | 5_3:-8984771 | Msa0796940:CDS |
| CTAGGAAAGCTTCACTTCAT+CGG | 0.529148 | 5_3:-8985936 | Msa0796940:CDS |
| GAAAATTCAACATAGGTGTA+CGG | 0.542214 | 5_3:+8986485 | None:intergenic |
| TGAAAGCATAGTTATTGTTG+TGG | 0.546555 | 5_3:+8986169 | None:intergenic |
| AATGAAGGCTAATATTAAGA+AGG | 0.546955 | 5_3:-8986319 | Msa0796940:CDS |
| AAGTTAAAGAAAGACAGAGC+TGG | 0.561002 | 5_3:+8984718 | None:intergenic |
| TCTTGGAGAAAAGGAAGGAT+AGG | 0.567398 | 5_3:-8985912 | Msa0796940:intron |
| TGAAGAATAGTTGTTTGAGG+AGG | 0.569497 | 5_3:+8986580 | None:intergenic |
| ACATGTTGAAAATTCAACAT+AGG | 0.573945 | 5_3:+8986478 | None:intergenic |
| TTTGTGGTCTTGTGGTGCCA+AGG | 0.580313 | 5_3:+8984754 | None:intergenic |
| TCCTCATCTCTCTCTACAAG+AGG | 0.582418 | 5_3:-8986452 | Msa0796940:CDS |
| TCGGTTCTTGGAGAAAAGGA+AGG | 0.585705 | 5_3:-8985917 | Msa0796940:CDS |
| CAATTAATGAATTCATGTCA+TGG | 0.607012 | 5_3:-8984781 | Msa0796940:CDS |
| TTTACCATAAATAACAGGTG+AGG | 0.612964 | 5_3:+8986080 | None:intergenic |
| ATACAGATTTACCAATGACT+AGG | 0.627962 | 5_3:-8985954 | Msa0796940:intron |
| TGTTGATGGAAGAATTGACA+TGG | 0.629229 | 5_3:+8984450 | None:intergenic |
| CTAAATGTTCGTGAATGTTG+TGG | 0.634244 | 5_3:-8984595 | Msa0796940:three_prime_UTR |
| AATTTCTAGCAAGAAATGAT+GGG | 0.637681 | 5_3:+8986130 | None:intergenic |
| ACCTCTTGTAGAGAGAGATG+AGG | 0.644344 | 5_3:+8986451 | None:intergenic |
| TTCTAGCAAGAAATGATGGG+TGG | 0.652275 | 5_3:+8986133 | None:intergenic |
| TGCATATACAGTGAATGTAG+AGG | 0.666288 | 5_3:+8984523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGGTAAAAAAAATAATAAT+TGG | - | chr5_3:8984983-8985002 | Msa0796940:intron | 10.0% |
| !!! | AAAAAAATTTCATCATTTTT+TGG | - | chr5_3:8985319-8985338 | Msa0796940:intron | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | + | chr5_3:8985487-8985506 | None:intergenic | 10.0% |
| !!! | AAAAAAATCTAATTTTTTTC+GGG | - | chr5_3:8985523-8985542 | Msa0796940:intron | 10.0% |
| !! | ATGGTAAAAAAAATAATAAT+TGG | - | chr5_3:8984983-8985002 | Msa0796940:intron | 10.0% |
| !!! | AAAAAAATTTCATCATTTTT+TGG | - | chr5_3:8985319-8985338 | Msa0796940:intron | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | + | chr5_3:8985487-8985506 | None:intergenic | 10.0% |
| !!! | AAAAAAATCTAATTTTTTTC+GGG | - | chr5_3:8985523-8985542 | Msa0796940:intron | 10.0% |
| !!! | AAATGACAATTTTTTATGAT+GGG | - | chr5_3:8984770-8984789 | Msa0796940:CDS | 15.0% |
| !!! | TTTTTTTTACCATAAATAAC+AGG | + | chr5_3:8984976-8984995 | None:intergenic | 15.0% |
| !!! | GTTAAGATTTTTCTTATTAA+TGG | + | chr5_3:8985267-8985286 | None:intergenic | 15.0% |
| !!! | TATAAGTTGATTAAAAAGTA+AGG | - | chr5_3:8985632-8985651 | Msa0796940:intron | 15.0% |
| !!! | TTTTGGGTTTAATATATTTT+TGG | + | chr5_3:8985715-8985734 | None:intergenic | 15.0% |
| !!! | TTATTTCCTATTTCATTTTT+GGG | + | chr5_3:8985731-8985750 | None:intergenic | 15.0% |
| !!! | ATTATTTCCTATTTCATTTT+TGG | + | chr5_3:8985732-8985751 | None:intergenic | 15.0% |
| !! | ATTATCAAATAAAAGTTCAT+CGG | + | chr5_3:8985776-8985795 | None:intergenic | 15.0% |
| !! | CAAAAATCATAATAGAAAAA+AGG | + | chr5_3:8986152-8986171 | None:intergenic | 15.0% |
| !! | TACACTTCTTAATTAATTAT+GGG | + | chr5_3:8986495-8986514 | None:intergenic | 15.0% |
| !! | TTACACTTCTTAATTAATTA+TGG | + | chr5_3:8986496-8986515 | None:intergenic | 15.0% |
| !!! | AAATGACAATTTTTTATGAT+GGG | - | chr5_3:8984770-8984789 | Msa0796940:CDS | 15.0% |
| !!! | TTTTTTTTACCATAAATAAC+AGG | + | chr5_3:8984976-8984995 | None:intergenic | 15.0% |
| !!! | GTTAAGATTTTTCTTATTAA+TGG | + | chr5_3:8985267-8985286 | None:intergenic | 15.0% |
| !!! | TATAAGTTGATTAAAAAGTA+AGG | - | chr5_3:8985632-8985651 | Msa0796940:intron | 15.0% |
| !!! | TTTTGGGTTTAATATATTTT+TGG | + | chr5_3:8985715-8985734 | None:intergenic | 15.0% |
| !!! | TTATTTCCTATTTCATTTTT+GGG | + | chr5_3:8985731-8985750 | None:intergenic | 15.0% |
| !!! | ATTATTTCCTATTTCATTTT+TGG | + | chr5_3:8985732-8985751 | None:intergenic | 15.0% |
| !! | ATTATCAAATAAAAGTTCAT+CGG | + | chr5_3:8985776-8985795 | None:intergenic | 15.0% |
| !! | CAAAAATCATAATAGAAAAA+AGG | + | chr5_3:8986152-8986171 | None:intergenic | 15.0% |
| !! | TACACTTCTTAATTAATTAT+GGG | + | chr5_3:8986495-8986514 | None:intergenic | 15.0% |
| !! | TTACACTTCTTAATTAATTA+TGG | + | chr5_3:8986496-8986515 | None:intergenic | 15.0% |
| !!! | TTATTTTTACAGTGTAATGA+AGG | - | chr5_3:8984714-8984733 | Msa0796940:exon | 20.0% |
| !!! | CAAATGACAATTTTTTATGA+TGG | - | chr5_3:8984769-8984788 | Msa0796940:CDS | 20.0% |
| !!! | ATATGAGTTGAATAAAAGTA+AGG | + | chr5_3:8985346-8985365 | None:intergenic | 20.0% |
| !!! | AATGACATTTTTTCACAAAT+AGG | + | chr5_3:8985570-8985589 | None:intergenic | 20.0% |
| !! | ATTAAACCCAAAAATGAAAT+AGG | - | chr5_3:8985722-8985741 | Msa0796940:intron | 20.0% |
| !!! | TATTTGATAATTGATAGACT+AGG | - | chr5_3:8985785-8985804 | Msa0796940:intron | 20.0% |
| !! | CAAACATATCAGTAAAAATA+TGG | + | chr5_3:8986179-8986198 | None:intergenic | 20.0% |
| !!! | ATTCATTAATTGGCTTATTA+AGG | + | chr5_3:8986259-8986278 | None:intergenic | 20.0% |
| !! | AACTATATATATCTATGAAC+TGG | - | chr5_3:8986363-8986382 | Msa0796940:intron | 20.0% |
| !!! | TTAATTAAGAAGTGTAATTC+TGG | - | chr5_3:8986499-8986518 | Msa0796940:CDS | 20.0% |
| !!! | TTATTTTTACAGTGTAATGA+AGG | - | chr5_3:8984714-8984733 | Msa0796940:exon | 20.0% |
| !!! | CAAATGACAATTTTTTATGA+TGG | - | chr5_3:8984769-8984788 | Msa0796940:CDS | 20.0% |
| !!! | ATATGAGTTGAATAAAAGTA+AGG | + | chr5_3:8985346-8985365 | None:intergenic | 20.0% |
| !!! | AATGACATTTTTTCACAAAT+AGG | + | chr5_3:8985570-8985589 | None:intergenic | 20.0% |
| !! | ATTAAACCCAAAAATGAAAT+AGG | - | chr5_3:8985722-8985741 | Msa0796940:intron | 20.0% |
| !!! | TATTTGATAATTGATAGACT+AGG | - | chr5_3:8985785-8985804 | Msa0796940:intron | 20.0% |
| !! | CAAACATATCAGTAAAAATA+TGG | + | chr5_3:8986179-8986198 | None:intergenic | 20.0% |
| !!! | ATTCATTAATTGGCTTATTA+AGG | + | chr5_3:8986259-8986278 | None:intergenic | 20.0% |
| !! | AACTATATATATCTATGAAC+TGG | - | chr5_3:8986363-8986382 | Msa0796940:intron | 20.0% |
| !!! | TTAATTAAGAAGTGTAATTC+TGG | - | chr5_3:8986499-8986518 | Msa0796940:CDS | 20.0% |
| !!! | ATGATGTTTTGTGCTTTTTT+CGG | + | chr5_3:8984531-8984550 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAATTCAACAT+AGG | + | chr5_3:8984573-8984592 | None:intergenic | 25.0% |
| ! | TTTCAAATTTAGGAAATTCC+AGG | - | chr5_3:8984619-8984638 | Msa0796940:three_prime_UTR | 25.0% |
| ! | CCTACTAAAAAAAATGTTGA+AGG | + | chr5_3:8984679-8984698 | None:intergenic | 25.0% |
| !!! | CCTTCAACATTTTTTTTAGT+AGG | - | chr5_3:8984676-8984695 | Msa0796940:three_prime_UTR | 25.0% |
| ! | AATGAAGGCTAATATTAAGA+AGG | - | chr5_3:8984729-8984748 | Msa0796940:CDS | 25.0% |
| !!! | AATTTCTAGCAAGAAATGAT+GGG | + | chr5_3:8984921-8984940 | None:intergenic | 25.0% |
| ! | TAATTGGATATCTATTTGAG+TGG | - | chr5_3:8984999-8985018 | Msa0796940:intron | 25.0% |
| !! | TCTTATTTGTTTGAGATATC+TGG | + | chr5_3:8985170-8985189 | None:intergenic | 25.0% |
| ! | TACAATCAAACAGTAATTAG+TGG | + | chr5_3:8985203-8985222 | None:intergenic | 25.0% |
| ! | ATTTGACAAACAGTAATTAG+TGG | + | chr5_3:8985289-8985308 | None:intergenic | 25.0% |
| !! | GTTAATTCTGAAAACTTAAG+AGG | - | chr5_3:8985812-8985831 | Msa0796940:intron | 25.0% |
| !!! | CTCAAACTTTTTTTTTTTGC+TGG | - | chr5_3:8985854-8985873 | Msa0796940:intron | 25.0% |
| !! | AGATTCAATACTTTTGCAAA+AGG | + | chr5_3:8985896-8985915 | None:intergenic | 25.0% |
| ! | ATTATCTGACTTTCAATCAA+TGG | + | chr5_3:8986021-8986040 | None:intergenic | 25.0% |
| ! | ATTGAAATCAACAATTCCTT+TGG | - | chr5_3:8986039-8986058 | Msa0796940:intron | 25.0% |
| ! | ATTTCGAAACAAGAAGTAAA+GGG | + | chr5_3:8986104-8986123 | None:intergenic | 25.0% |
| ! | TATTTCGAAACAAGAAGTAA+AGG | + | chr5_3:8986105-8986124 | None:intergenic | 25.0% |
| ! | AAAAAGGTTATCAATTTGAC+AGG | + | chr5_3:8986136-8986155 | None:intergenic | 25.0% |
| ! | CATGACATGAATTCATTAAT+TGG | + | chr5_3:8986269-8986288 | None:intergenic | 25.0% |
| ! | CAATTAATGAATTCATGTCA+TGG | - | chr5_3:8986267-8986286 | Msa0796940:CDS | 25.0% |
| !!! | ATGATGTTTTGTGCTTTTTT+CGG | + | chr5_3:8984531-8984550 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAATTCAACAT+AGG | + | chr5_3:8984573-8984592 | None:intergenic | 25.0% |
| ! | TTTCAAATTTAGGAAATTCC+AGG | - | chr5_3:8984619-8984638 | Msa0796940:three_prime_UTR | 25.0% |
| ! | CCTACTAAAAAAAATGTTGA+AGG | + | chr5_3:8984679-8984698 | None:intergenic | 25.0% |
| !!! | CCTTCAACATTTTTTTTAGT+AGG | - | chr5_3:8984676-8984695 | Msa0796940:three_prime_UTR | 25.0% |
| ! | AATGAAGGCTAATATTAAGA+AGG | - | chr5_3:8984729-8984748 | Msa0796940:CDS | 25.0% |
| !!! | AATTTCTAGCAAGAAATGAT+GGG | + | chr5_3:8984921-8984940 | None:intergenic | 25.0% |
| ! | TAATTGGATATCTATTTGAG+TGG | - | chr5_3:8984999-8985018 | Msa0796940:intron | 25.0% |
| !! | TCTTATTTGTTTGAGATATC+TGG | + | chr5_3:8985170-8985189 | None:intergenic | 25.0% |
| ! | TACAATCAAACAGTAATTAG+TGG | + | chr5_3:8985203-8985222 | None:intergenic | 25.0% |
| ! | ATTTGACAAACAGTAATTAG+TGG | + | chr5_3:8985289-8985308 | None:intergenic | 25.0% |
| !! | GTTAATTCTGAAAACTTAAG+AGG | - | chr5_3:8985812-8985831 | Msa0796940:intron | 25.0% |
| !!! | CTCAAACTTTTTTTTTTTGC+TGG | - | chr5_3:8985854-8985873 | Msa0796940:intron | 25.0% |
| !! | AGATTCAATACTTTTGCAAA+AGG | + | chr5_3:8985896-8985915 | None:intergenic | 25.0% |
| ! | ATTATCTGACTTTCAATCAA+TGG | + | chr5_3:8986021-8986040 | None:intergenic | 25.0% |
| ! | ATTGAAATCAACAATTCCTT+TGG | - | chr5_3:8986039-8986058 | Msa0796940:intron | 25.0% |
| ! | ATTTCGAAACAAGAAGTAAA+GGG | + | chr5_3:8986104-8986123 | None:intergenic | 25.0% |
| ! | TATTTCGAAACAAGAAGTAA+AGG | + | chr5_3:8986105-8986124 | None:intergenic | 25.0% |
| ! | AAAAAGGTTATCAATTTGAC+AGG | + | chr5_3:8986136-8986155 | None:intergenic | 25.0% |
| ! | CATGACATGAATTCATTAAT+TGG | + | chr5_3:8986269-8986288 | None:intergenic | 25.0% |
| ! | CAATTAATGAATTCATGTCA+TGG | - | chr5_3:8986267-8986286 | Msa0796940:CDS | 25.0% |
| GATTGAAGAATAGTTGTTTG+AGG | + | chr5_3:8984474-8984493 | None:intergenic | 30.0% | |
| GAAAATTCAACATAGGTGTA+CGG | + | chr5_3:8984566-8984585 | None:intergenic | 30.0% | |
| CTACAAGAGGTTTCAAATTT+AGG | - | chr5_3:8984609-8984628 | Msa0796940:three_prime_UTR | 30.0% | |
| TATTCCAACTGAAAAAGTCA+AGG | - | chr5_3:8984813-8984832 | Msa0796940:CDS | 30.0% | |
| TGAAAAAGTCAAGGACATTA+TGG | - | chr5_3:8984822-8984841 | Msa0796940:CDS | 30.0% | |
| ! | TGAAAGCATAGTTATTGTTG+TGG | + | chr5_3:8984882-8984901 | None:intergenic | 30.0% |
| !! | GAATTTCTAGCAAGAAATGA+TGG | + | chr5_3:8984922-8984941 | None:intergenic | 30.0% |
| TGATACTTGAAGAGAATTGT+TGG | + | chr5_3:8984947-8984966 | None:intergenic | 30.0% | |
| TTTACCATAAATAACAGGTG+AGG | + | chr5_3:8984971-8984990 | None:intergenic | 30.0% | |
| !! | CTTGATTTTGATCTGTGTAA+TGG | - | chr5_3:8985027-8985046 | Msa0796940:intron | 30.0% |
| ATACAGATTTACCAATGACT+AGG | - | chr5_3:8985094-8985113 | Msa0796940:intron | 30.0% | |
| ! | TTCAATACTTTTGCAAAAGG+AGG | + | chr5_3:8985893-8985912 | None:intergenic | 30.0% |
| ! | TTGGCTTATTAAGGTTTGTT+GGG | + | chr5_3:8986250-8986269 | None:intergenic | 30.0% |
| ! | ATTGGCTTATTAAGGTTTGT+TGG | + | chr5_3:8986251-8986270 | None:intergenic | 30.0% |
| TATGAACTGGATCAATCATT+AGG | - | chr5_3:8986376-8986395 | Msa0796940:intron | 30.0% | |
| ATGAACTGGATCAATCATTA+GGG | - | chr5_3:8986377-8986396 | Msa0796940:intron | 30.0% | |
| ! | TTTCTCTATTTTGTAGGACT+TGG | - | chr5_3:8986402-8986421 | Msa0796940:intron | 30.0% |
| !! | AGACATATTTTTGTGAGCAT+AGG | + | chr5_3:8986435-8986454 | None:intergenic | 30.0% |
| GATTGAAGAATAGTTGTTTG+AGG | + | chr5_3:8984474-8984493 | None:intergenic | 30.0% | |
| GAAAATTCAACATAGGTGTA+CGG | + | chr5_3:8984566-8984585 | None:intergenic | 30.0% | |
| CTACAAGAGGTTTCAAATTT+AGG | - | chr5_3:8984609-8984628 | Msa0796940:three_prime_UTR | 30.0% | |
| TATTCCAACTGAAAAAGTCA+AGG | - | chr5_3:8984813-8984832 | Msa0796940:CDS | 30.0% | |
| TGAAAAAGTCAAGGACATTA+TGG | - | chr5_3:8984822-8984841 | Msa0796940:CDS | 30.0% | |
| ! | TGAAAGCATAGTTATTGTTG+TGG | + | chr5_3:8984882-8984901 | None:intergenic | 30.0% |
| !! | GAATTTCTAGCAAGAAATGA+TGG | + | chr5_3:8984922-8984941 | None:intergenic | 30.0% |
| TGATACTTGAAGAGAATTGT+TGG | + | chr5_3:8984947-8984966 | None:intergenic | 30.0% | |
| TTTACCATAAATAACAGGTG+AGG | + | chr5_3:8984971-8984990 | None:intergenic | 30.0% | |
| !! | CTTGATTTTGATCTGTGTAA+TGG | - | chr5_3:8985027-8985046 | Msa0796940:intron | 30.0% |
| ATACAGATTTACCAATGACT+AGG | - | chr5_3:8985094-8985113 | Msa0796940:intron | 30.0% | |
| ! | TTCAATACTTTTGCAAAAGG+AGG | + | chr5_3:8985893-8985912 | None:intergenic | 30.0% |
| ! | TTGGCTTATTAAGGTTTGTT+GGG | + | chr5_3:8986250-8986269 | None:intergenic | 30.0% |
| ! | ATTGGCTTATTAAGGTTTGT+TGG | + | chr5_3:8986251-8986270 | None:intergenic | 30.0% |
| TATGAACTGGATCAATCATT+AGG | - | chr5_3:8986376-8986395 | Msa0796940:intron | 30.0% | |
| ATGAACTGGATCAATCATTA+GGG | - | chr5_3:8986377-8986396 | Msa0796940:intron | 30.0% | |
| ! | TTTCTCTATTTTGTAGGACT+TGG | - | chr5_3:8986402-8986421 | Msa0796940:intron | 30.0% |
| !! | AGACATATTTTTGTGAGCAT+AGG | + | chr5_3:8986435-8986454 | None:intergenic | 30.0% |
| GAAGAATAGTTGTTTGAGGA+GGG | + | chr5_3:8984470-8984489 | None:intergenic | 35.0% | |
| TGAAGAATAGTTGTTTGAGG+AGG | + | chr5_3:8984471-8984490 | None:intergenic | 35.0% | |
| !!! | GTTTTGTGCTTTTTTCGGTA+CGG | + | chr5_3:8984526-8984545 | None:intergenic | 35.0% |
| ! | ATTGTCATTTGTGCACATCT+AGG | + | chr5_3:8984760-8984779 | None:intergenic | 35.0% |
| !!! | ATGTCCTTGACTTTTTCAGT+TGG | + | chr5_3:8984820-8984839 | None:intergenic | 35.0% |
| ! | ATTATGGTCTTTTCCTCCAA+AGG | - | chr5_3:8984838-8984857 | Msa0796940:intron | 35.0% |
| TTGAGAGTTAGTAGTTCCTT+TGG | + | chr5_3:8984857-8984876 | None:intergenic | 35.0% | |
| ! | TCATCCTCACCTGTTATTTA+TGG | - | chr5_3:8984964-8984983 | Msa0796940:intron | 35.0% |
| ! | ATTTGTTTGAGATATCTGGC+AGG | + | chr5_3:8985166-8985185 | None:intergenic | 35.0% |
| TCAACAATTCCTTTGGACAT+AGG | - | chr5_3:8986046-8986065 | Msa0796940:intron | 35.0% | |
| GTTGGGTTACTTGTTTGATA+TGG | + | chr5_3:8986233-8986252 | None:intergenic | 35.0% | |
| AAGTTAAAGAAAGACAGAGC+TGG | + | chr5_3:8986333-8986352 | None:intergenic | 35.0% | |
| !! | AGGGTGTTTCTCTATTTTGT+AGG | - | chr5_3:8986396-8986415 | Msa0796940:intron | 35.0% |
| CTAAATGTTCGTGAATGTTG+TGG | - | chr5_3:8986453-8986472 | Msa0796940:CDS | 35.0% | |
| TGCATATACAGTGAATGTAG+AGG | + | chr5_3:8986528-8986547 | None:intergenic | 35.0% | |
| ! | TGTTGATGGAAGAATTGACA+TGG | + | chr5_3:8986601-8986620 | None:intergenic | 35.0% |
| GAAGAATAGTTGTTTGAGGA+GGG | + | chr5_3:8984470-8984489 | None:intergenic | 35.0% | |
| TGAAGAATAGTTGTTTGAGG+AGG | + | chr5_3:8984471-8984490 | None:intergenic | 35.0% | |
| !!! | GTTTTGTGCTTTTTTCGGTA+CGG | + | chr5_3:8984526-8984545 | None:intergenic | 35.0% |
| ! | ATTGTCATTTGTGCACATCT+AGG | + | chr5_3:8984760-8984779 | None:intergenic | 35.0% |
| !!! | ATGTCCTTGACTTTTTCAGT+TGG | + | chr5_3:8984820-8984839 | None:intergenic | 35.0% |
| ! | ATTATGGTCTTTTCCTCCAA+AGG | - | chr5_3:8984838-8984857 | Msa0796940:intron | 35.0% |
| TTGAGAGTTAGTAGTTCCTT+TGG | + | chr5_3:8984857-8984876 | None:intergenic | 35.0% | |
| ! | TCATCCTCACCTGTTATTTA+TGG | - | chr5_3:8984964-8984983 | Msa0796940:intron | 35.0% |
| ! | ATTTGTTTGAGATATCTGGC+AGG | + | chr5_3:8985166-8985185 | None:intergenic | 35.0% |
| TCAACAATTCCTTTGGACAT+AGG | - | chr5_3:8986046-8986065 | Msa0796940:intron | 35.0% | |
| GTTGGGTTACTTGTTTGATA+TGG | + | chr5_3:8986233-8986252 | None:intergenic | 35.0% | |
| AAGTTAAAGAAAGACAGAGC+TGG | + | chr5_3:8986333-8986352 | None:intergenic | 35.0% | |
| !! | AGGGTGTTTCTCTATTTTGT+AGG | - | chr5_3:8986396-8986415 | Msa0796940:intron | 35.0% |
| CTAAATGTTCGTGAATGTTG+TGG | - | chr5_3:8986453-8986472 | Msa0796940:CDS | 35.0% | |
| TGCATATACAGTGAATGTAG+AGG | + | chr5_3:8986528-8986547 | None:intergenic | 35.0% | |
| ! | TGTTGATGGAAGAATTGACA+TGG | + | chr5_3:8986601-8986620 | None:intergenic | 35.0% |
| GTAGCAAAAGAACATGTACC+TGG | + | chr5_3:8984640-8984659 | None:intergenic | 40.0% | |
| AGAGTTAGTAGTTCCTTTGG+AGG | + | chr5_3:8984854-8984873 | None:intergenic | 40.0% | |
| ! | TTCTAGCAAGAAATGATGGG+TGG | + | chr5_3:8984918-8984937 | None:intergenic | 40.0% |
| AGTGAAGCTTTCCTAGTCAT+TGG | + | chr5_3:8985108-8985127 | None:intergenic | 40.0% | |
| CTAGGAAAGCTTCACTTCAT+CGG | - | chr5_3:8985112-8985131 | Msa0796940:intron | 40.0% | |
| !! | TTCATCGGTTCTTGGAGAAA+AGG | - | chr5_3:8985127-8985146 | Msa0796940:intron | 40.0% |
| TCTTGGAGAAAAGGAAGGAT+AGG | - | chr5_3:8985136-8985155 | Msa0796940:intron | 40.0% | |
| GCCATCAATTTGTGATCAGT+CGG | - | chr5_3:8985918-8985937 | Msa0796940:CDS | 40.0% | |
| CATGCATTTCCTATGTCCAA+AGG | + | chr5_3:8986058-8986077 | None:intergenic | 40.0% | |
| ! | CATTCTGATTTGTGGTCTTG+TGG | + | chr5_3:8986305-8986324 | None:intergenic | 40.0% |
| ! | TGGAGCTACATTCTGATTTG+TGG | + | chr5_3:8986313-8986332 | None:intergenic | 40.0% |
| GTAGCAAAAGAACATGTACC+TGG | + | chr5_3:8984640-8984659 | None:intergenic | 40.0% | |
| AGAGTTAGTAGTTCCTTTGG+AGG | + | chr5_3:8984854-8984873 | None:intergenic | 40.0% | |
| ! | TTCTAGCAAGAAATGATGGG+TGG | + | chr5_3:8984918-8984937 | None:intergenic | 40.0% |
| AGTGAAGCTTTCCTAGTCAT+TGG | + | chr5_3:8985108-8985127 | None:intergenic | 40.0% | |
| CTAGGAAAGCTTCACTTCAT+CGG | - | chr5_3:8985112-8985131 | Msa0796940:intron | 40.0% | |
| !! | TTCATCGGTTCTTGGAGAAA+AGG | - | chr5_3:8985127-8985146 | Msa0796940:intron | 40.0% |
| TCTTGGAGAAAAGGAAGGAT+AGG | - | chr5_3:8985136-8985155 | Msa0796940:intron | 40.0% | |
| GCCATCAATTTGTGATCAGT+CGG | - | chr5_3:8985918-8985937 | Msa0796940:CDS | 40.0% | |
| CATGCATTTCCTATGTCCAA+AGG | + | chr5_3:8986058-8986077 | None:intergenic | 40.0% | |
| ! | CATTCTGATTTGTGGTCTTG+TGG | + | chr5_3:8986305-8986324 | None:intergenic | 40.0% |
| ! | TGGAGCTACATTCTGATTTG+TGG | + | chr5_3:8986313-8986332 | None:intergenic | 40.0% |
| TCCTCATCTCTCTCTACAAG+AGG | - | chr5_3:8984596-8984615 | Msa0796940:three_prime_UTR | 45.0% | |
| ACCTCTTGTAGAGAGAGATG+AGG | + | chr5_3:8984600-8984619 | None:intergenic | 45.0% | |
| !! | AGCTTCACTTCATCGGTTCT+TGG | - | chr5_3:8985119-8985138 | Msa0796940:intron | 45.0% |
| TCGGTTCTTGGAGAAAAGGA+AGG | - | chr5_3:8985131-8985150 | Msa0796940:intron | 45.0% | |
| GCCGACTGATCACAAATTGA+TGG | + | chr5_3:8985922-8985941 | None:intergenic | 45.0% | |
| ATTCATGTCATGGCTCTCCT+TGG | - | chr5_3:8986277-8986296 | Msa0796940:CDS | 45.0% | |
| TCCTCATCTCTCTCTACAAG+AGG | - | chr5_3:8984596-8984615 | Msa0796940:three_prime_UTR | 45.0% | |
| ACCTCTTGTAGAGAGAGATG+AGG | + | chr5_3:8984600-8984619 | None:intergenic | 45.0% | |
| !! | AGCTTCACTTCATCGGTTCT+TGG | - | chr5_3:8985119-8985138 | Msa0796940:intron | 45.0% |
| TCGGTTCTTGGAGAAAAGGA+AGG | - | chr5_3:8985131-8985150 | Msa0796940:intron | 45.0% | |
| GCCGACTGATCACAAATTGA+TGG | + | chr5_3:8985922-8985941 | None:intergenic | 45.0% | |
| ATTCATGTCATGGCTCTCCT+TGG | - | chr5_3:8986277-8986296 | Msa0796940:CDS | 45.0% | |
| !!! | TAAAAAAATCTAATTTTTTT+CGG | - | chr5_3:8985522-8985541 | Msa0796940:intron | 5.0% |
| !!! | TAAAAAAATCTAATTTTTTT+CGG | - | chr5_3:8985522-8985541 | Msa0796940:intron | 5.0% |
| TTGTTTGAGGAGGGTGAGAG+TGG | + | chr5_3:8984461-8984480 | None:intergenic | 50.0% | |
| !! | TTTGTGGTCTTGTGGTGCCA+AGG | + | chr5_3:8986297-8986316 | None:intergenic | 50.0% |
| TTGTTTGAGGAGGGTGAGAG+TGG | + | chr5_3:8984461-8984480 | None:intergenic | 50.0% | |
| !! | TTTGTGGTCTTGTGGTGCCA+AGG | + | chr5_3:8986297-8986316 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 8984437 | 8986633 | 8984437 | ID=Msa0796940;Name=Msa0796940 |
| chr5_3 | mRNA | 8984437 | 8986633 | 8984437 | ID=Msa0796940-mRNA-1;Parent=Msa0796940;Name=Msa0796940-mRNA-1;_AED=0.22;_eAED=0.22;_QI=112|1|1|1|1|1|4|284|181 |
| chr5_3 | exon | 8984437 | 8984856 | 8984437 | ID=Msa0796940-mRNA-1:exon:3813;Parent=Msa0796940-mRNA-1 |
| chr5_3 | exon | 8985913 | 8985970 | 8985913 | ID=Msa0796940-mRNA-1:exon:3812;Parent=Msa0796940-mRNA-1 |
| chr5_3 | exon | 8986085 | 8986344 | 8986085 | ID=Msa0796940-mRNA-1:exon:3811;Parent=Msa0796940-mRNA-1 |
| chr5_3 | exon | 8986430 | 8986633 | 8986430 | ID=Msa0796940-mRNA-1:exon:3810;Parent=Msa0796940-mRNA-1 |
| chr5_3 | five_prime_UTR | 8986522 | 8986633 | 8986522 | ID=Msa0796940-mRNA-1:five_prime_utr;Parent=Msa0796940-mRNA-1 |
| chr5_3 | CDS | 8986430 | 8986521 | 8986430 | ID=Msa0796940-mRNA-1:cds;Parent=Msa0796940-mRNA-1 |
| chr5_3 | CDS | 8986085 | 8986344 | 8986085 | ID=Msa0796940-mRNA-1:cds;Parent=Msa0796940-mRNA-1 |
| chr5_3 | CDS | 8985913 | 8985970 | 8985913 | ID=Msa0796940-mRNA-1:cds;Parent=Msa0796940-mRNA-1 |
| chr5_3 | CDS | 8984721 | 8984856 | 8984721 | ID=Msa0796940-mRNA-1:cds;Parent=Msa0796940-mRNA-1 |
| chr5_3 | three_prime_UTR | 8984437 | 8984720 | 8984437 | ID=Msa0796940-mRNA-1:three_prime_utr;Parent=Msa0796940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
