AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1153170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153170 MtrunA17_Chr7g0243681 84.476 496 72 1 1 496 1 491 0.0 870
Msa1153170 MtrunA17_Chr7g0243631 82.400 500 86 1 1 498 1 500 0.0 845
Msa1153170 MtrunA17_Chr7g0243951 75.351 499 120 3 1 498 1 497 0.0 778
Msa1153170 MtrunA17_Chr4g0060511 74.303 502 124 3 1 498 1 501 0.0 768
Msa1153170 MtrunA17_Chr7g0243771 74.074 486 122 2 8 493 3 484 0.0 753
Msa1153170 MtrunA17_Chr7g0243931 72.345 499 136 2 1 498 7 504 0.0 749
Msa1153170 MtrunA17_Chr7g0243861 74.648 497 124 2 3 498 6 501 0.0 747
Msa1153170 MtrunA17_Chr7g0243801 72.414 493 128 3 1 493 1 485 0.0 744
Msa1153170 MtrunA17_Chr7g0235051 74.498 498 96 2 1 498 1 467 0.0 732
Msa1153170 MtrunA17_Chr7g0243761 74.297 498 98 2 1 498 1 468 0.0 722
Msa1153170 MtrunA17_Chr7g0243781 67.078 486 151 2 9 493 7 484 0.0 665
Msa1153170 MtrunA17_Chr7g0243871 66.329 493 154 4 1 493 1 481 0.0 662
Msa1153170 MtrunA17_Chr7g0243851 65.531 499 128 3 1 498 1 456 0.0 660
Msa1153170 MtrunA17_Chr5g0401851 51.429 490 234 2 5 492 4 491 0.0 523
Msa1153170 MtrunA17_Chr7g0243811 62.899 407 138 2 23 429 1 394 0.0 514
Msa1153170 MtrunA17_Chr7g0243611 76.527 311 58 2 126 436 1 296 1.56e-175 495
Msa1153170 MtrunA17_Chr8g0355221 50.307 489 237 4 5 491 9 493 3.97e-173 497
Msa1153170 MtrunA17_Chr1g0165701 50.000 492 241 4 5 496 9 495 6.07e-173 496
Msa1153170 MtrunA17_Chr5g0416741 50.101 493 239 4 8 498 10 497 9.64e-168 483
Msa1153170 MtrunA17_Chr6g0463891 50.205 488 238 5 10 495 11 495 6.78e-164 473
Msa1153170 MtrunA17_Chr5g0416821 48.491 497 232 6 5 494 4 483 3.79e-156 453
Msa1153170 MtrunA17_Chr7g0243711 79.528 254 51 1 245 498 78 330 1.34e-143 415
Msa1153170 MtrunA17_Chr7g0243711 87.342 79 10 0 1 79 1 79 2.43e-41 150
Msa1153170 MtrunA17_Chr4g0044511 43.892 483 256 8 7 486 36 506 2.00e-133 395
Msa1153170 MtrunA17_Chr8g0366391 44.848 495 250 11 1 487 1 480 1.47e-131 390
Msa1153170 MtrunA17_Chr4g0044501 44.332 494 252 11 1 487 1 478 1.97e-126 377
Msa1153170 MtrunA17_Chr4g0066221 41.992 512 255 14 1 493 1 489 9.61e-124 370
Msa1153170 MtrunA17_Chr4g0066151 41.865 504 256 13 1 491 7 486 1.50e-119 359
Msa1153170 MtrunA17_Chr4g0066201 42.339 496 243 15 10 492 17 482 1.31e-118 357
Msa1153170 MtrunA17_Chr4g0066261 40.551 508 269 12 1 493 1 490 7.02e-118 355
Msa1153170 MtrunA17_Chr4g0044521 42.324 482 258 7 8 487 6 469 2.53e-117 353
Msa1153170 MtrunA17_Chr4g0066131 41.734 496 253 10 10 493 12 483 2.57e-117 353
Msa1153170 MtrunA17_Chr4g0014061 39.712 486 279 5 10 493 8 481 2.60e-117 353
Msa1153170 MtrunA17_Chr4g0066281 41.344 491 255 12 10 493 11 475 7.15e-115 347
Msa1153170 MtrunA17_Chr8g0374971 40.530 491 273 7 10 493 11 489 2.94e-114 346
Msa1153170 MtrunA17_Chr5g0419771 41.767 498 272 12 1 488 27 516 4.61e-114 346
Msa1153170 MtrunA17_Chr8g0374901 40.937 491 269 9 10 493 11 487 7.59e-113 342
Msa1153170 MtrunA17_Chr1g0179901 37.870 507 286 11 1 491 7 500 2.83e-111 338
Msa1153170 MtrunA17_Chr7g0275681 39.496 476 279 5 11 484 12 480 8.46e-111 337
Msa1153170 MtrunA17_Chr4g0066171 40.481 499 249 15 10 493 20 485 8.59e-111 337
Msa1153170 MtrunA17_Chr8g0350881 40.808 495 266 9 10 493 11 489 2.85e-110 336
Msa1153170 MtrunA17_Chr7g0265151 39.394 495 277 13 1 484 1 483 3.36e-110 335
Msa1153170 MtrunA17_Chr7g0265041 40.644 497 273 12 1 484 1 488 3.48e-108 330
Msa1153170 MtrunA17_Chr4g0011051 37.725 501 275 11 9 488 7 491 3.32e-106 325
Msa1153170 MtrunA17_Chr7g0243921 70.892 213 57 1 2 214 31 238 1.82e-105 314
Msa1153170 MtrunA17_Chr6g0463861 39.919 491 260 12 10 488 10 477 5.03e-105 322
Msa1153170 MtrunA17_Chr5g0419761 39.796 490 281 9 10 489 8 493 3.91e-104 320
Msa1153170 MtrunA17_Chr2g0294931 39.062 512 271 13 1 493 1 490 3.44e-103 318
Msa1153170 MtrunA17_Chr6g0463851 38.976 508 262 14 1 485 1 483 1.31e-102 316
Msa1153170 MtrunA17_Chr7g0265141 38.934 488 277 10 8 483 6 484 2.28e-102 315
Msa1153170 MtrunA17_Chr8g0374931 38.160 511 273 13 1 491 1 488 2.97e-102 315
Msa1153170 MtrunA17_Chr7g0243911 74.257 202 51 1 268 469 15 215 3.36e-102 305
Msa1153170 MtrunA17_Chr8g0374941 41.260 492 264 9 10 491 948 1424 9.19e-102 333
Msa1153170 MtrunA17_Chr8g0374941 40.625 480 260 10 1 470 1 465 7.96e-97 319
Msa1153170 MtrunA17_Chr8g0374941 40.506 474 259 8 1 465 466 925 3.36e-94 312
Msa1153170 MtrunA17_Chr4g0044481 43.066 411 191 7 11 414 27 401 1.86e-99 306
Msa1153170 MtrunA17_Chr5g0410941 37.451 510 274 14 1 491 13 496 7.62e-99 306
Msa1153170 MtrunA17_Chr7g0218311 38.690 504 263 13 10 493 15 492 7.94e-99 306
Msa1153170 MtrunA17_Chr7g0265111 37.849 502 295 9 3 494 31 525 1.34e-98 307
Msa1153170 MtrunA17_Chr2g0294921 37.500 512 275 13 1 491 150 637 3.73e-98 309
Msa1153170 MtrunA17_Chr5g0428081 37.255 510 277 13 1 491 1 486 1.38e-95 298
Msa1153170 MtrunA17_Chr7g0265051 36.253 491 297 11 9 491 7 489 1.59e-94 295
Msa1153170 MtrunA17_Chr7g0265101 35.446 505 288 12 9 493 7 493 1.05e-93 293
Msa1153170 MtrunA17_Chr7g0231631 49.123 285 124 5 216 498 8 273 4.99e-78 245
Msa1153170 MtrunA17_Chr2g0294941 38.275 371 188 14 119 469 15 364 1.92e-67 221
Msa1153170 MtrunA17_Chr7g0243721 71.831 142 38 1 186 325 1 142 3.72e-63 202
Msa1153170 MtrunA17_Chr5g0440421 28.235 510 323 11 3 487 2 493 1.12e-59 204
Msa1153170 MtrunA17_Chr8g0361411 30.675 489 293 13 9 488 6 457 1.74e-56 194
Msa1153170 MtrunA17_Chr5g0414331 30.612 490 289 17 4 484 6 453 5.08e-56 194
Msa1153170 MtrunA17_Chr6g0464861 27.800 500 298 16 1 484 1 453 4.78e-55 191
Msa1153170 MtrunA17_Chr6g0454261 29.051 506 306 14 11 492 10 486 5.25e-55 191
Msa1153170 MtrunA17_Chr6g0464881 28.081 495 309 14 4 489 3 459 6.77e-55 191
Msa1153170 MtrunA17_Chr5g0414321 29.920 498 298 17 1 489 1 456 8.36e-55 190
Msa1153170 MtrunA17_Chr6g0454191 28.405 514 301 14 3 484 2 480 1.04e-54 191
Msa1153170 MtrunA17_Chr6g0464871 28.831 496 299 17 1 484 13 466 1.65e-54 189
Msa1153170 MtrunA17_Chr2g0329111 28.660 485 288 17 12 470 7 459 6.61e-54 189
Msa1153170 MtrunA17_Chr7g0231651 48.000 200 99 2 5 199 4 203 1.06e-53 180
Msa1153170 MtrunA17_Chr6g0464841 28.657 499 296 18 1 484 1 454 2.08e-53 186
Msa1153170 MtrunA17_Chr3g0078841 28.283 495 307 13 11 484 10 477 2.29e-53 187
Msa1153170 MtrunA17_Chr6g0454401 27.984 511 307 13 3 484 2 480 2.46e-53 187
Msa1153170 MtrunA17_Chr7g0250001 29.541 501 273 20 8 484 3 447 5.03e-53 185
Msa1153170 MtrunA17_Chr7g0217881 30.769 494 280 18 11 484 10 461 5.54e-53 186
Msa1153170 MtrunA17_Chr3g0098111 27.655 499 312 13 6 486 4 471 5.85e-53 186
Msa1153170 MtrunA17_Chr6g0454341 28.346 508 290 19 11 484 10 477 2.40e-52 184
Msa1153170 MtrunA17_Chr6g0454331 26.820 522 294 13 6 484 2 478 5.08e-52 183
Msa1153170 MtrunA17_Chr3g0112771 29.688 512 287 17 1 492 1 459 1.11e-51 182
Msa1153170 MtrunA17_Chr3g0118671 29.600 500 298 17 9 484 4 473 1.46e-51 182
Msa1153170 MtrunA17_Chr2g0307961 30.943 488 291 18 11 484 13 468 1.67e-51 182
Msa1153170 MtrunA17_Chr6g0464921 29.058 499 295 18 1 484 1 455 1.78e-51 181
Msa1153170 MtrunA17_Chr6g0454291 28.543 508 301 14 6 484 2 476 7.87e-51 180
Msa1153170 MtrunA17_Chr7g0249931 27.033 492 303 14 6 484 35 483 8.07e-51 180
Msa1153170 MtrunA17_Chr8g0377921 29.630 486 298 15 12 482 5 461 9.43e-51 179
Msa1153170 MtrunA17_Chr7g0232391 29.800 500 273 20 10 477 5 458 1.44e-50 179
Msa1153170 MtrunA17_Chr3g0118711 28.682 516 300 18 1 484 1 480 2.01e-50 179
Msa1153170 MtrunA17_Chr2g0278711 28.346 508 316 13 1 488 1 480 4.23e-50 178
Msa1153170 MtrunA17_Chr6g0454321 29.006 493 296 18 11 479 10 472 4.49e-50 181
Msa1153170 MtrunA17_Chr6g0453951 27.530 494 314 12 11 484 57 526 4.80e-50 179
Msa1153170 MtrunA17_Chr7g0232411 28.627 510 286 19 10 487 5 468 5.29e-50 177
Msa1153170 MtrunA17_Chr6g0459311 30.470 489 279 17 12 477 14 464 5.61e-50 177
Msa1153170 MtrunA17_Chr8g0336331 26.800 500 307 13 11 484 10 476 7.22e-50 177
Msa1153170 MtrunA17_Chr8g0359821 28.112 498 304 11 11 484 10 477 8.39e-50 177
Msa1153170 MtrunA17_Chr6g0454361 28.257 499 304 14 11 484 11 480 9.57e-50 177
Msa1153170 MtrunA17_Chr3g0112761 29.779 497 277 16 11 487 8 452 1.30e-49 176
Msa1153170 MtrunA17_Chr6g0486251 29.555 494 285 17 8 477 3 457 1.80e-49 176
Msa1153170 MtrunA17_Chr6g0486201 29.555 494 285 17 8 477 3 457 1.80e-49 176
Msa1153170 MtrunA17_Chr5g0426431 29.459 499 304 15 6 484 7 477 2.42e-49 176
Msa1153170 MtrunA17_Chr8g0361371 28.485 495 294 14 12 481 8 467 3.62e-49 176
Msa1153170 MtrunA17_Chr8g0380531 28.921 491 305 12 4 485 3 458 4.07e-49 175
Msa1153170 MtrunA17_Chr3g0118701 28.850 513 281 20 11 484 15 482 5.60e-49 175
Msa1153170 MtrunA17_Chr4g0050341 29.109 505 296 18 11 485 19 491 5.77e-49 175
Msa1153170 MtrunA17_Chr6g0454141 26.707 498 313 14 11 484 10 479 5.99e-49 175
Msa1153170 MtrunA17_Chr6g0454201 27.976 504 299 12 11 484 11 480 6.04e-49 175
Msa1153170 MtrunA17_Chr6g0454181 27.075 506 301 15 11 484 10 479 6.31e-49 175
Msa1153170 MtrunA17_Chr1g0207971 26.613 496 314 16 6 490 3 459 1.23e-48 174
Msa1153170 MtrunA17_Chr3g0092641 30.629 493 292 18 6 477 7 470 1.63e-48 174
Msa1153170 MtrunA17_Chr3g0118691 29.051 506 289 18 11 484 15 482 1.74e-48 174
Msa1153170 MtrunA17_Chr6g0454301 27.565 497 308 15 11 484 263 730 6.68e-48 176
Msa1153170 MtrunA17_Chr6g0454301 33.195 241 143 4 243 483 6 228 2.07e-33 134
Msa1153170 MtrunA17_Chr8g0370941 28.711 512 282 17 11 477 8 481 2.46e-47 171
Msa1153170 MtrunA17_Chr5g0448521 28.000 500 297 17 9 482 3 465 3.03e-47 170
Msa1153170 MtrunA17_Chr5g0420801 26.916 509 296 18 6 487 2 461 3.37e-47 170
Msa1153170 MtrunA17_Chr6g0462551 28.630 489 282 13 21 482 14 462 4.29e-47 170
Msa1153170 MtrunA17_Chr1g0159551 29.142 501 261 17 6 473 9 448 4.81e-47 169
Msa1153170 MtrunA17_Chr1g0161351 27.400 500 310 14 9 488 35 501 5.67e-47 170
Msa1153170 MtrunA17_Chr3g0121991 27.490 502 311 18 11 489 79 550 7.05e-47 171
Msa1153170 MtrunA17_Chr7g0218831 29.046 482 280 15 11 481 6 436 8.65e-47 168
Msa1153170 MtrunA17_Chr1g0207981 27.198 489 316 14 9 484 11 472 8.77e-47 169
Msa1153170 MtrunA17_Chr7g0249981 27.733 494 305 17 1 484 15 466 1.19e-46 169
Msa1153170 MtrunA17_Chr6g0454151 27.510 498 307 13 11 484 10 477 1.37e-46 169
Msa1153170 MtrunA17_Chr8g0357361 45.813 203 103 5 211 413 57 252 2.13e-46 162
Msa1153170 MtrunA17_Chr1g0173121 29.897 485 281 18 6 473 9 451 2.83e-46 167
Msa1153170 MtrunA17_Chr3g0118771 27.778 504 298 15 11 484 21 488 2.94e-46 168
Msa1153170 MtrunA17_Chr6g0454131 26.735 490 322 11 11 484 10 478 3.13e-46 167
Msa1153170 MtrunA17_Chr7g0218821 29.878 492 277 18 11 482 5 448 5.99e-46 166
Msa1153170 MtrunA17_Chr6g0449931 35.435 333 157 10 186 487 165 470 6.58e-46 167
Msa1153170 MtrunA17_Chr8g0334831 28.942 501 293 16 12 481 7 475 6.90e-46 167
Msa1153170 MtrunA17_Chr8g0369341 27.519 516 294 16 6 487 2 471 1.47e-45 166
Msa1153170 MtrunA17_Chr6g0453961 26.104 498 317 12 11 484 19 489 1.68e-45 166
Msa1153170 MtrunA17_Chr3g0122001 27.655 499 304 17 11 484 486 952 3.32e-45 170
Msa1153170 MtrunA17_Chr3g0122001 27.006 511 315 17 11 495 6 484 2.20e-44 167
Msa1153170 MtrunA17_Chr7g0232341 35.517 290 145 9 217 489 207 471 5.49e-45 164
Msa1153170 MtrunA17_Chr7g0218841 28.008 482 286 15 11 481 6 437 6.85e-45 163
Msa1153170 MtrunA17_Chr6g0454271 32.997 297 177 6 191 484 9 286 8.79e-45 159
Msa1153170 MtrunA17_Chr8g0377941 28.317 505 291 17 6 484 2 461 1.01e-44 163
Msa1153170 MtrunA17_Chr1g0207931 25.761 493 274 13 5 485 86 498 1.87e-44 163
Msa1153170 MtrunA17_Chr6g0454121 28.231 503 298 16 11 484 10 478 2.12e-44 162
Msa1153170 MtrunA17_Chr5g0423981 26.789 489 289 14 11 484 10 444 2.66e-44 162
Msa1153170 MtrunA17_Chr7g0232331 27.811 507 293 19 11 487 6 469 2.70e-44 162
Msa1153170 MtrunA17_Chr4g0053501 28.715 498 307 16 1 484 1 464 3.75e-44 162
Msa1153170 MtrunA17_Chr6g0454211 26.758 512 313 13 2 484 288 766 4.56e-44 166
Msa1153170 MtrunA17_Chr6g0454211 30.000 200 102 6 191 387 72 236 8.73e-19 89.7
Msa1153170 MtrunA17_Chr7g0218811 27.629 485 286 16 11 482 15 447 7.86e-44 160
Msa1153170 MtrunA17_Chr8g0382021 27.879 495 280 17 16 481 39 485 8.27e-44 161
Msa1153170 MtrunA17_Chr7g0275511 28.862 492 285 16 12 477 16 468 1.07e-43 160
Msa1153170 MtrunA17_Chr8g0347281 28.313 498 280 16 12 480 19 468 1.42e-43 160
Msa1153170 MtrunA17_Chr8g0335161 28.834 489 278 20 11 470 6 453 1.52e-43 160
Msa1153170 MtrunA17_Chr8g0335141 36.170 282 146 6 217 487 213 471 1.74e-43 160
Msa1153170 MtrunA17_Chr6g0452771 26.640 503 307 14 11 484 10 479 2.05e-43 160
Msa1153170 MtrunA17_Chr1g0207831 26.559 497 305 19 10 485 7 464 2.58e-43 159
Msa1153170 MtrunA17_Chr5g0442491 28.628 503 291 19 12 482 6 472 2.95e-43 159
Msa1153170 MtrunA17_Chr5g0412131 28.655 513 297 21 1 486 1 471 5.69e-43 159
Msa1153170 MtrunA17_Chr5g0442541 28.112 498 293 19 11 482 5 463 6.20e-43 158
Msa1153170 MtrunA17_Chr6g0454351 27.843 510 275 19 11 484 12 464 6.39e-43 158
Msa1153170 MtrunA17_Chr8g0339451 31.178 433 221 18 86 480 66 459 9.30e-43 158
Msa1153170 MtrunA17_Chr5g0442521 26.775 493 314 14 12 482 6 473 1.13e-42 158
Msa1153170 MtrunA17_Chr6g0462521 34.505 313 157 10 187 480 166 449 1.34e-42 157
Msa1153170 MtrunA17_Chr1g0207861 26.946 501 313 17 6 486 3 470 1.44e-42 157
Msa1153170 MtrunA17_Chr7g0243731 85.000 80 12 0 340 419 1 80 2.17e-42 145
Msa1153170 MtrunA17_Chr5g0412101 27.525 505 293 19 11 486 12 472 2.82e-42 157
Msa1153170 MtrunA17_Chr3g0118661 27.381 504 297 17 11 483 13 478 3.99e-42 156
Msa1153170 MtrunA17_Chr3g0079731 26.482 506 301 18 12 481 7 477 4.92e-42 156
Msa1153170 MtrunA17_Chr1g0207951 26.531 490 309 15 10 484 655 1108 8.22e-42 160
Msa1153170 MtrunA17_Chr1g0207951 26.033 484 315 14 10 485 123 571 7.13e-41 157
Msa1153170 MtrunA17_Chr7g0232401 37.895 285 137 10 217 486 210 469 1.07e-41 155
Msa1153170 MtrunA17_Chr7g0232311 32.588 313 171 7 183 481 174 460 1.59e-41 154
Msa1153170 MtrunA17_Chr8g0373301 35.192 287 140 8 217 486 211 468 1.75e-41 154
Msa1153170 MtrunA17_Chr8g0339461 36.918 279 131 9 215 473 207 460 2.16e-41 154
Msa1153170 MtrunA17_Chr4g0066141 45.556 180 92 2 319 493 182 360 2.63e-41 151
Msa1153170 MtrunA17_Chr4g0066141 36.181 199 105 5 39 234 8 187 4.87e-27 112
Msa1153170 MtrunA17_Chr4g0053321 27.459 488 308 14 21 493 36 492 3.26e-41 154
Msa1153170 MtrunA17_Chr8g0347271 28.659 492 286 17 12 480 20 469 4.66e-41 153
Msa1153170 MtrunA17_Chr5g0442581 28.427 496 303 20 12 482 6 474 6.95e-41 154
Msa1153170 MtrunA17_Chr6g0462531 27.218 496 297 19 12 480 5 463 1.01e-40 152
Msa1153170 MtrunA17_Chr5g0412111 26.559 497 306 16 11 486 5 463 1.35e-40 152
Msa1153170 MtrunA17_Chr5g0403641 33.692 279 155 5 217 480 235 498 1.94e-40 152
Msa1153170 MtrunA17_Chr8g0339601 35.350 314 156 12 180 471 29 317 2.07e-40 148
Msa1153170 MtrunA17_Chr8g0365811 25.948 501 330 15 1 486 485 959 2.32e-40 155
Msa1153170 MtrunA17_Chr8g0365811 25.490 459 286 14 6 439 4 431 6.33e-37 145
Msa1153170 MtrunA17_Chr6g0462571 27.016 496 296 16 12 482 5 459 2.78e-40 151
Msa1153170 MtrunA17_Chr8g0339631 33.939 330 163 12 188 487 167 471 3.13e-40 151
Msa1153170 MtrunA17_Chr8g0336691 35.836 293 146 10 205 480 1108 1375 3.46e-40 155
Msa1153170 MtrunA17_Chr8g0336691 28.094 509 293 20 10 488 12 477 1.31e-39 153
Msa1153170 MtrunA17_Chr8g0336691 36.525 282 123 10 217 488 681 916 1.01e-34 139
Msa1153170 MtrunA17_Chr5g0431441 27.859 481 293 17 11 477 18 458 4.46e-40 150
Msa1153170 MtrunA17_Chr8g0334851 35.235 298 143 9 213 489 206 474 5.67e-40 150
Msa1153170 MtrunA17_Chr5g0393591 25.253 495 275 17 11 485 17 436 6.02e-40 150
Msa1153170 MtrunA17_Chr8g0336651 36.877 301 136 10 204 480 969 1239 1.12e-39 154
Msa1153170 MtrunA17_Chr8g0336651 36.559 279 123 9 217 488 547 778 1.72e-38 150
Msa1153170 MtrunA17_Chr8g0336651 34.483 290 154 8 204 480 194 460 8.87e-36 142
Msa1153170 MtrunA17_Chr5g0431361 27.383 493 292 14 11 486 12 455 2.65e-39 148
Msa1153170 MtrunA17_Chr6g0454221 36.777 242 134 5 243 483 6 229 2.74e-39 144
Msa1153170 MtrunA17_Chr7g0218791 27.536 483 299 16 11 483 5 446 9.43e-39 146
Msa1153170 MtrunA17_Chr8g0339441 40.724 221 103 5 275 480 218 425 9.56e-39 146
Msa1153170 MtrunA17_Chr5g0442601 28.257 499 300 22 12 482 405 873 1.21e-38 150
Msa1153170 MtrunA17_Chr5g0442601 30.592 304 163 11 121 410 64 333 1.03e-27 117
Msa1153170 MtrunA17_Chr2g0278721 27.883 477 288 19 1 460 5 442 1.98e-38 149
Msa1153170 MtrunA17_Chr2g0278721 24.536 485 302 18 1 460 508 953 3.98e-27 115
Msa1153170 MtrunA17_Chr6g0462541 33.451 284 149 7 210 482 207 461 5.09e-38 145
Msa1153170 MtrunA17_Chr1g0153451 35.612 278 140 9 217 480 207 459 7.68e-38 144
Msa1153170 MtrunA17_Chr5g0442561 24.291 494 324 14 11 482 5 470 1.08e-37 144
Msa1153170 MtrunA17_Chr8g0334861 34.752 282 142 8 217 481 204 460 2.07e-37 143
Msa1153170 MtrunA17_Chr6g0454251 27.206 408 248 14 11 388 7 395 3.45e-37 141
Msa1153170 MtrunA17_Chr5g0442511 33.108 296 167 10 204 485 216 494 4.87e-37 142
Msa1153170 MtrunA17_Chr1g0153461 37.445 227 117 5 273 487 2 215 5.19e-37 135
Msa1153170 MtrunA17_Chr3g0118721 33.876 307 164 12 191 484 9 289 2.25e-36 136
Msa1153170 MtrunA17_Chr3g0118751 25.447 503 282 14 11 484 6 444 2.34e-36 140
Msa1153170 MtrunA17_Chr5g0426401 32.692 312 184 8 176 481 16 307 3.17e-36 136
Msa1153170 MtrunA17_Chr2g0302961 26.559 497 312 17 8 484 2 465 3.33e-36 139
Msa1153170 MtrunA17_Chr5g0401721 26.680 491 319 15 9 484 6 470 5.30e-36 139
Msa1153170 MtrunA17_Chr4g0032331 28.184 479 271 21 1 459 1 426 8.73e-36 138
Msa1153170 MtrunA17_Chr7g0241801 26.786 504 256 17 9 497 7 412 1.39e-35 137
Msa1153170 MtrunA17_Chr8g0336731 32.166 314 175 9 188 481 192 487 1.56e-35 138
Msa1153170 MtrunA17_Chr8g0336741 34.520 281 140 8 217 480 214 467 1.67e-35 138
Msa1153170 MtrunA17_Chr7g0249961 37.619 210 112 5 275 484 69 259 1.99e-35 133
Msa1153170 MtrunA17_Chr2g0278741 26.514 479 288 16 3 460 89 524 3.92e-35 138
Msa1153170 MtrunA17_Chr5g0431421 25.620 484 315 13 8 486 7 450 6.16e-35 135
Msa1153170 MtrunA17_Chr5g0448551 28.199 422 242 18 12 410 8 391 2.09e-34 134
Msa1153170 MtrunA17_Chr6g0464091 28.511 470 278 20 10 460 17 447 5.32e-34 134
Msa1153170 MtrunA17_Chr4g0042931 27.968 497 299 18 6 476 2 465 6.07e-34 133
Msa1153170 MtrunA17_Chr4g0069611 26.793 474 274 16 10 460 14 437 8.38e-34 133
Msa1153170 MtrunA17_Chr3g0106231 26.526 475 293 18 11 477 18 444 2.55e-33 132
Msa1153170 MtrunA17_Chr5g0431401 25.413 484 316 14 8 486 7 450 3.39e-33 131
Msa1153170 MtrunA17_Chr5g0432731 29.412 289 172 6 204 487 38 299 8.58e-33 126
Msa1153170 MtrunA17_Chr5g0429681 26.195 481 317 18 12 482 45 497 1.83e-32 129
Msa1153170 MtrunA17_Chr2g0302991 27.600 500 300 20 8 484 2 462 1.91e-32 129
Msa1153170 MtrunA17_Chr5g0431371 25.773 485 307 15 11 486 10 450 2.13e-32 129
Msa1153170 MtrunA17_Chr5g0409591 26.425 386 221 11 118 459 92 458 2.19e-32 129
Msa1153170 MtrunA17_Chr6g0454171 28.322 286 168 6 202 484 58 309 2.38e-32 125
Msa1153170 MtrunA17_Chr4g0072761 37.615 218 112 6 267 481 256 452 5.08e-32 127
Msa1153170 MtrunA17_Chr7g0241781 25.333 450 262 12 9 447 7 393 6.69e-32 127
Msa1153170 MtrunA17_Chr5g0429711 26.240 484 312 18 12 484 12 461 1.08e-31 127
Msa1153170 MtrunA17_Chr2g0302851 27.178 482 285 18 1 460 1 438 2.37e-31 126
Msa1153170 MtrunA17_Chr8g0355011 25.600 375 207 7 121 484 48 361 2.85e-31 124
Msa1153170 MtrunA17_Chr6g0482061 26.692 517 310 19 1 485 1 480 5.60e-31 125
Msa1153170 MtrunA17_Chr6g0454371 34.574 188 105 4 297 484 1 170 5.49e-30 115
Msa1153170 MtrunA17_Chr4g0072771 26.471 510 294 20 2 486 14 467 5.85e-30 122
Msa1153170 MtrunA17_Chr3g0106251 30.712 267 154 7 214 477 48 286 6.77e-30 119
Msa1153170 MtrunA17_Chr8g0336251 24.847 491 328 14 6 483 2 464 1.05e-29 121
Msa1153170 MtrunA17_Chr4g0042891 30.928 291 167 8 207 486 200 467 1.19e-29 121
Msa1153170 MtrunA17_Chr8g0336321 24.847 491 328 14 6 483 2 464 1.25e-29 121
Msa1153170 MtrunA17_Chr3g0079711 35.385 195 100 4 301 481 3 185 2.74e-29 114
Msa1153170 MtrunA17_Chr6g0466831 24.784 464 296 18 10 460 17 440 1.85e-28 117
Msa1153170 MtrunA17_Chr1g0196851 26.258 457 270 15 8 443 46 456 1.95e-28 118
Msa1153170 MtrunA17_Chr6g0466841 25.161 465 293 18 10 460 17 440 4.69e-28 116
Msa1153170 MtrunA17_Chr7g0232351 28.186 408 229 17 10 387 5 378 1.29e-27 114
Msa1153170 MtrunA17_Chr4g0040691 24.512 461 290 16 6 449 3 422 4.18e-27 114
Msa1153170 MtrunA17_Chr4g0039881 25.983 458 274 19 21 459 2 413 7.15e-27 112
Msa1153170 MtrunA17_Chr4g0029151 24.892 462 280 13 7 448 16 430 1.04e-26 112
Msa1153170 MtrunA17_Chr4g0029131 24.270 445 293 10 7 443 8 416 1.17e-26 114
Msa1153170 MtrunA17_Chr8g0367221 27.040 429 254 17 1 402 787 1183 3.33e-25 110
Msa1153170 MtrunA17_Chr8g0367221 26.218 431 254 18 1 402 1 396 4.77e-21 97.4
Msa1153170 MtrunA17_Chr8g0367221 38.281 128 75 3 277 402 1548 1673 7.46e-18 87.4
Msa1153170 MtrunA17_Chr4g0040711 24.524 473 288 19 6 456 3 428 9.40e-25 107
Msa1153170 MtrunA17_Chr3g0092031 33.696 184 107 6 277 460 6 174 1.17e-24 101
Msa1153170 MtrunA17_Chr8g0336261 36.842 152 79 2 297 448 1 135 1.89e-24 99.0
Msa1153170 MtrunA17_Chr2g0283041 23.422 491 323 16 8 484 4 455 1.03e-23 103
Msa1153170 MtrunA17_Chr6g0454231 30.627 271 126 10 217 484 7 218 3.68e-23 102
Msa1153170 MtrunA17_Chr7g0250021 27.095 358 197 11 6 339 7 324 4.27e-23 100
Msa1153170 MtrunA17_Chr2g0319751 25.167 449 292 13 10 448 484 898 1.17e-22 102
Msa1153170 MtrunA17_Chr2g0319751 22.198 455 289 13 10 456 7 404 2.03e-17 85.9
Msa1153170 MtrunA17_Chr8g0337381 38.298 141 72 3 348 487 2 128 2.15e-22 92.8
Msa1153170 MtrunA17_Chr2g0319731 24.632 475 303 15 1 459 15 450 4.58e-22 99.0
Msa1153170 MtrunA17_Chr2g0319801 25.380 461 286 15 5 448 2 421 7.12e-22 98.2
Msa1153170 MtrunA17_Chr2g0319791 23.799 458 302 16 10 456 7 428 3.97e-21 95.9
Msa1153170 MtrunA17_Chr5g0431431 28.326 233 129 5 209 439 147 343 4.12e-21 94.7
Msa1153170 MtrunA17_Chr5g0427571 30.279 251 141 8 222 461 49 276 4.13e-21 94.0
Msa1153170 MtrunA17_Chr2g0319761 23.904 456 302 13 10 455 7 427 1.35e-20 94.4
Msa1153170 MtrunA17_Chr1g0207881 35.294 136 75 3 352 485 261 385 2.07e-20 93.2
Msa1153170 MtrunA17_Chr6g0453981 31.788 151 89 4 179 321 60 204 1.72e-14 73.2
Msa1153170 MtrunA17_Chr7g0272701 32.520 123 80 2 105 224 30 152 1.42e-13 68.6
Msa1153170 MtrunA17_Chr4g0066231 43.750 80 40 2 386 463 1 77 1.46e-13 65.9
Msa1153170 MtrunA17_Chr6g0453941 30.065 153 94 3 177 321 110 257 1.52e-13 70.9
Msa1153170 MtrunA17_Chr6g0477011 24.601 313 202 8 10 312 15 303 1.46e-12 68.6
Msa1153170 MtrunA17_Chr2g0321331 29.070 172 93 4 278 448 87 230 1.08e-11 65.5
Msa1153170 MtrunA17_Chr6g0454391 34.513 113 48 3 359 459 8 106 5.80e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153170 AT2G15490.3 40.974 493 268 10 6 488 2 481 8.78e-124 370
Msa1153170 AT4G34131.1 42.191 493 263 11 3 486 2 481 1.78e-122 367
Msa1153170 AT2G15490.1 40.726 496 268 10 6 488 2 484 2.53e-122 367
Msa1153170 AT2G15480.2 40.120 501 277 11 3 488 2 494 3.50e-121 364
Msa1153170 AT2G36770.1 40.081 494 287 6 3 491 6 495 7.28e-121 363
Msa1153170 AT2G15480.1 39.394 495 279 9 3 488 2 484 1.13e-120 362
Msa1153170 AT4G34135.1 41.935 496 265 11 1 486 1 483 6.80e-119 358
Msa1153170 AT2G36780.1 39.271 494 291 6 3 491 6 495 5.03e-118 356
Msa1153170 AT2G36800.1 39.506 486 280 8 10 487 11 490 1.15e-116 353
Msa1153170 AT2G36750.1 39.220 487 286 7 10 491 9 490 9.25e-116 350
Msa1153170 AT2G36760.1 38.571 490 288 7 10 492 13 496 4.14e-114 346
Msa1153170 AT2G36790.1 39.300 486 286 6 10 490 12 493 8.06e-113 343
Msa1153170 AT4G34138.1 38.384 495 277 11 8 491 8 485 1.75e-109 334
Msa1153170 AT3G53150.1 37.045 494 289 8 9 484 20 509 1.95e-101 314
Msa1153170 AT3G53160.1 36.680 488 292 10 6 484 3 482 2.10e-100 311
Msa1153170 AT4G34135.2 40.303 330 186 5 1 322 1 327 6.07e-76 242
Msa1153170 AT5G14860.1 33.925 507 263 21 11 484 8 475 5.59e-66 221
Msa1153170 AT2G16890.2 32.207 503 268 17 11 484 9 467 2.14e-63 214
Msa1153170 AT1G22400.1 30.326 521 300 16 1 491 1 488 1.07e-60 207
Msa1153170 AT1G10400.1 31.485 505 270 17 9 484 5 462 1.88e-60 206
Msa1153170 AT2G16890.3 32.385 457 238 15 11 439 9 422 8.11e-59 200
Msa1153170 AT1G73880.1 29.352 494 308 14 8 491 11 473 1.03e-57 199
Msa1153170 AT1G22380.1 29.149 470 289 11 11 458 13 460 5.33e-57 197
Msa1153170 AT5G03490.1 29.072 485 298 14 11 487 19 465 1.73e-54 190
Msa1153170 AT1G22360.1 28.429 503 315 16 1 484 1 477 1.48e-52 185
Msa1153170 AT1G78270.1 29.470 509 293 18 6 484 8 480 7.60e-52 183
Msa1153170 AT4G15490.1 27.049 488 313 16 11 484 8 466 1.48e-51 182
Msa1153170 AT1G22340.1 28.876 516 300 18 1 484 1 481 1.14e-50 180
Msa1153170 AT4G15480.1 27.455 499 318 16 1 484 9 478 3.19e-50 179
Msa1153170 AT1G22360.2 29.398 432 276 13 1 414 1 421 3.75e-50 178
Msa1153170 AT1G51210.1 28.480 467 264 15 11 460 20 433 1.82e-49 176
Msa1153170 AT1G06000.1 30.879 489 258 20 11 484 10 433 9.48e-49 174
Msa1153170 AT1G05675.1 29.098 488 285 16 11 481 6 449 1.11e-48 174
Msa1153170 AT1G22370.2 29.673 428 266 13 6 414 8 419 4.23e-48 173
Msa1153170 AT3G11340.1 28.163 490 286 16 12 487 10 447 8.82e-48 171
Msa1153170 AT4G01070.1 28.125 512 288 16 11 489 8 472 1.08e-47 172
Msa1153170 AT1G01420.2 30.315 508 277 19 1 477 1 462 1.37e-47 172
Msa1153170 AT1G01420.1 30.539 501 271 19 8 477 5 459 1.54e-47 171
Msa1153170 AT2G43820.1 28.106 491 297 14 7 486 3 448 1.58e-47 171
Msa1153170 AT5G05860.1 28.630 489 284 17 4 477 2 440 5.69e-47 169
Msa1153170 AT5G12890.1 26.000 500 316 12 10 483 9 480 5.79e-47 170
Msa1153170 AT1G05680.1 28.074 488 290 15 11 481 6 449 2.47e-46 167
Msa1153170 AT3G21760.1 28.131 519 290 20 9 484 2 480 4.41e-46 167
Msa1153170 AT4G14090.1 28.455 492 293 17 6 483 8 454 8.14e-46 166
Msa1153170 AT3G50740.1 28.681 523 274 23 11 487 7 476 1.75e-45 166
Msa1153170 AT5G26310.1 29.709 515 269 22 11 485 7 468 4.99e-45 165
Msa1153170 AT4G36770.1 29.293 495 266 17 9 470 2 445 5.93e-45 164
Msa1153170 AT3G02100.1 27.112 509 296 18 2 486 4 461 7.70e-45 164
Msa1153170 AT2G43840.2 28.163 490 288 17 11 485 7 447 8.73e-45 163
Msa1153170 AT5G05870.1 27.510 498 298 17 5 484 2 454 1.22e-44 163
Msa1153170 AT2G43840.1 28.163 490 288 17 11 485 7 447 1.29e-44 163
Msa1153170 AT4G15500.1 26.295 502 316 20 11 495 9 473 3.55e-44 162
Msa1153170 AT2G29740.1 28.824 510 292 23 7 484 4 474 5.91e-44 162
Msa1153170 AT2G28080.1 29.268 492 288 17 15 486 22 473 7.59e-44 161
Msa1153170 AT2G31750.1 28.252 492 290 17 11 484 8 454 8.59e-44 160
Msa1153170 AT1G24100.1 27.439 492 295 16 11 484 11 458 9.15e-44 160
Msa1153170 AT2G31750.2 27.699 491 294 16 11 484 8 454 1.18e-43 161
Msa1153170 AT3G46670.1 27.935 494 288 18 11 487 9 451 1.22e-43 160
Msa1153170 AT2G31790.1 28.659 492 292 17 11 487 8 455 1.26e-43 160
Msa1153170 AT2G30140.1 26.358 497 301 14 1 481 1 448 2.37e-43 159
Msa1153170 AT3G46680.1 27.479 484 294 20 11 482 9 447 3.56e-43 159
Msa1153170 AT2G36970.1 26.640 503 312 15 11 491 10 477 5.79e-43 159
Msa1153170 AT5G66690.1 28.937 508 282 20 11 485 7 468 7.76e-43 159
Msa1153170 AT3G46660.1 27.016 496 290 18 12 487 15 458 2.23e-42 157
Msa1153170 AT2G30140.2 26.358 497 300 15 1 481 1 447 2.81e-42 157
Msa1153170 AT5G59590.1 26.860 484 304 15 9 484 8 449 3.05e-42 156
Msa1153170 AT3G21560.1 26.033 484 325 13 11 484 12 472 3.49e-42 157
Msa1153170 AT4G15550.1 28.346 508 281 22 11 483 13 472 4.87e-42 156
Msa1153170 AT3G16520.3 32.404 287 159 7 203 481 197 456 1.59e-41 155
Msa1153170 AT4G15260.1 32.099 324 179 11 172 484 61 354 2.64e-41 152
Msa1153170 AT3G55700.1 27.642 492 295 14 11 487 8 453 3.24e-41 154
Msa1153170 AT5G05880.1 27.291 502 294 17 5 487 2 451 4.07e-41 153
Msa1153170 AT2G30150.2 27.381 504 278 18 11 487 13 455 4.35e-41 153
Msa1153170 AT1G07260.1 27.397 511 293 22 9 484 4 471 7.59e-41 153
Msa1153170 AT5G59580.1 26.804 485 304 16 11 487 9 450 1.57e-40 152
Msa1153170 AT3G21790.1 26.306 517 300 18 9 484 2 478 1.77e-40 152
Msa1153170 AT2G23260.1 27.607 489 298 20 9 484 8 453 2.43e-40 151
Msa1153170 AT2G30150.1 27.200 500 276 18 15 487 1 439 7.37e-40 150
Msa1153170 AT3G16520.1 32.727 275 150 7 203 469 197 444 1.46e-39 149
Msa1153170 AT3G16520.2 32.727 275 150 7 203 469 197 444 1.57e-39 149
Msa1153170 AT2G18570.1 25.347 505 299 20 8 479 2 461 1.71e-39 149
Msa1153170 AT1G07250.1 28.231 503 300 21 9 484 4 472 3.38e-39 149
Msa1153170 AT3G46700.1 25.767 489 299 14 11 486 9 446 5.71e-39 147
Msa1153170 AT3G21800.1 25.577 520 298 20 8 484 2 475 9.39e-39 147
Msa1153170 AT3G46650.1 27.004 474 281 16 11 477 10 425 9.86e-39 146
Msa1153170 AT2G23250.1 27.044 477 286 18 21 484 8 435 5.81e-38 144
Msa1153170 AT1G05530.1 26.166 493 306 16 9 484 3 454 7.68e-38 144
Msa1153170 AT5G05890.1 26.337 505 299 17 5 487 2 455 1.07e-37 144
Msa1153170 AT2G26480.1 26.572 493 286 16 9 481 6 442 2.70e-37 143
Msa1153170 AT2G29730.1 25.813 492 323 18 10 488 4 466 6.81e-37 142
Msa1153170 AT3G46690.1 25.462 487 308 10 11 486 9 451 3.36e-36 140
Msa1153170 AT1G01390.1 29.663 445 244 17 8 419 5 413 4.67e-36 140
Msa1153170 AT1G01390.2 29.888 445 243 18 8 419 22 430 5.92e-36 140
Msa1153170 AT4G15280.2 25.954 524 300 18 3 484 28 505 5.96e-36 140
Msa1153170 AT3G55710.1 27.912 498 296 16 11 490 8 460 6.03e-36 139
Msa1153170 AT4G15280.1 26.062 518 295 18 9 484 2 473 2.09e-35 138
Msa1153170 AT1G22370.1 31.878 229 147 4 191 414 25 249 2.21e-35 134
Msa1153170 AT5G38010.1 26.044 503 303 17 1 484 1 453 3.77e-35 137
Msa1153170 AT1G05560.1 26.263 495 296 21 11 484 5 451 5.83e-35 137
Msa1153170 AT3G46720.1 26.775 493 285 18 11 486 9 442 7.16e-35 136
Msa1153170 AT5G05900.1 26.653 499 284 20 8 482 5 445 7.34e-35 136
Msa1153170 AT1G05560.2 26.747 501 286 22 11 484 55 501 1.15e-34 136
Msa1153170 AT3G21780.1 24.704 506 312 17 9 484 2 468 2.46e-33 132
Msa1153170 AT3G21750.1 28.788 330 186 10 172 484 171 468 6.92e-33 130
Msa1153170 AT2G15490.2 32.105 190 119 3 6 186 2 190 7.87e-33 126
Msa1153170 AT1G07240.1 32.721 272 155 9 210 473 213 464 2.49e-32 129
Msa1153170 AT5G38040.1 25.630 476 296 14 21 484 20 449 2.95e-32 129
Msa1153170 AT2G18560.1 31.628 215 126 4 275 479 168 371 3.40e-32 127
Msa1153170 AT2G16890.4 31.212 330 169 12 11 312 9 308 1.21e-31 124
Msa1153170 AT2G16890.1 31.212 330 169 12 11 312 9 308 1.21e-31 124
Msa1153170 AT2G29750.1 25.049 507 306 21 11 484 8 473 1.69e-31 127
Msa1153170 AT5G49690.1 25.349 501 302 17 10 492 9 455 9.67e-31 124
Msa1153170 AT2G29710.1 26.337 486 302 19 12 472 6 460 1.25e-30 124
Msa1153170 AT5G65550.1 26.834 477 272 18 9 450 7 441 1.76e-30 124
Msa1153170 AT5G17050.1 34.286 210 117 5 275 484 268 456 2.28e-27 115
Msa1153170 AT4G27570.1 26.164 451 277 16 9 448 5 410 7.08e-27 113
Msa1153170 AT3G22250.1 25.056 447 254 15 12 418 9 414 2.15e-26 112
Msa1153170 AT5G17030.1 32.857 210 120 6 275 484 267 455 3.71e-26 111
Msa1153170 AT5G17040.2 29.740 269 157 9 218 484 99 337 5.96e-26 108
Msa1153170 AT5G17040.1 30.112 269 156 9 218 484 201 439 7.21e-26 110
Msa1153170 AT3G29630.2 25.514 486 293 15 8 491 3 421 7.66e-26 110
Msa1153170 AT4G27560.1 25.942 451 276 16 9 440 5 416 1.70e-25 109
Msa1153170 AT3G29630.1 24.696 494 313 14 8 491 3 447 5.47e-25 107
Msa1153170 AT5G54010.1 25.221 452 283 14 8 448 3 410 9.32e-25 107
Msa1153170 AT1G50580.1 25.203 492 295 16 8 476 3 444 1.11e-24 107
Msa1153170 AT2G22590.1 25.236 424 264 13 2 402 6 399 2.35e-24 106
Msa1153170 AT1G30530.1 25.876 371 233 11 121 484 115 450 9.54e-24 104
Msa1153170 AT1G64910.1 24.766 428 278 13 10 430 5 395 2.70e-23 102
Msa1153170 AT5G37950.1 27.063 303 188 9 94 387 65 343 5.52e-21 94.7
Msa1153170 AT5G53990.1 24.777 448 280 16 10 448 5 404 5.94e-21 95.9
Msa1153170 AT5G37950.2 41.593 113 64 2 275 387 227 337 6.06e-21 94.4
Msa1153170 AT1G64920.1 23.878 490 315 18 8 487 3 444 1.86e-20 94.4
Msa1153170 AT5G54060.1 21.446 415 275 14 8 402 10 393 1.45e-19 91.7
Msa1153170 AT4G09500.1 23.303 442 271 14 9 448 4 379 6.12e-19 89.4
Msa1153170 AT2G22930.1 23.077 442 295 13 10 448 5 404 2.19e-18 87.8
Msa1153170 AT4G09500.2 23.251 443 295 13 9 448 4 404 3.81e-18 87.4

Find 90 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCCTCTATAGTCTTCT+TGG 0.184608 7_4:+39466993 None:intergenic
TATCTGGGTTGTAAGGAAAA+AGG 0.199186 7_4:-39467433 Msa1153170:CDS
CTCCTCTGCAGCTTCCTAAT+TGG 0.244485 7_4:-39467821 Msa1153170:CDS
GGCACCACAGCTCCTTATAT+TGG 0.265519 7_4:-39467325 Msa1153170:CDS
AAGAGGCAGACTGGTTAAAT+TGG 0.271096 7_4:-39467572 Msa1153170:CDS
GTCACAATCGCTCCTGTTGC+AGG 0.279867 7_4:+39467297 None:intergenic
AAGCCGTAAAAGTGAATTCT+TGG 0.280742 7_4:+39467960 None:intergenic
CTCTTTGTCCTTATCCAATT+AGG 0.291715 7_4:+39467807 None:intergenic
ATGTTACATGAAGTTGGTTA+TGG 0.297776 7_4:+39468363 None:intergenic
AGGGCTATATCATATGGAAT+TGG 0.320112 7_4:-39467347 Msa1153170:CDS
TAACAAGGATAATGAGAAAA+AGG 0.321265 7_4:-39467625 Msa1153170:CDS
GCACATGGGCTTGAAAATTC+AGG 0.326438 7_4:-39467465 Msa1153170:CDS
TGAATTGAAGTCACTGTCTA+TGG 0.334767 7_4:+39468217 None:intergenic
AAGGATGAAAGAAAGCAAAA+AGG 0.338970 7_4:-39467367 Msa1153170:CDS
CTCCTCTATGCGTCCCCTAT+TGG 0.346181 7_4:+39467602 None:intergenic
TCCTTTCCTCAAAATCTTGA+AGG 0.361084 7_4:+39467385 None:intergenic
TCCGTACTGTATGTAAGTTT+TGG 0.373417 7_4:-39467528 Msa1153170:CDS
TGTTACATGAAGTTGGTTAT+GGG 0.375904 7_4:+39468364 None:intergenic
TTGCAGGGTGATCCAATATA+AGG 0.392942 7_4:+39467313 None:intergenic
GTGAAGATGTAGTGGTGAAA+AGG 0.396895 7_4:-39467107 Msa1153170:CDS
TCCTCATTTCTATGCTCTCT+TGG 0.396929 7_4:+39467043 None:intergenic
GCAGCTTGTTCGGCGGTCCA+AGG 0.428312 7_4:+39467996 None:intergenic
TTGTTAGCCCATGATGAAAC+TGG 0.431380 7_4:+39467642 None:intergenic
TGAAGATGTAGTGGTGAAAA+GGG 0.442557 7_4:-39467106 Msa1153170:CDS
AATCTTGCAGTGTCAATCAT+AGG 0.443213 7_4:+39468308 None:intergenic
GGGCTATATCATATGGAATT+GGG 0.452750 7_4:-39467346 Msa1153170:CDS
GAGCAATAGAAAACAAGTTA+TGG 0.454124 7_4:-39467143 Msa1153170:CDS
ATAGACAGTGACTTCAATTC+AGG 0.455147 7_4:-39468215 Msa1153170:CDS
GGATTCATATGGCCAGGACT+TGG 0.458733 7_4:+39468329 None:intergenic
ATATTGGATCACCCTGCAAC+AGG 0.459289 7_4:-39467309 Msa1153170:CDS
AACATTGGCCATGTAATCAT+TGG 0.467524 7_4:+39467228 None:intergenic
ATGATTACATGGCCAATGTT+TGG 0.469197 7_4:-39467225 Msa1153170:CDS
TGCAGCTTCCTAATTGGATA+AGG 0.471991 7_4:-39467815 Msa1153170:CDS
CTAGCATGGGGATCAAATCT+TGG 0.472530 7_4:-39467674 Msa1153170:CDS
GAATAAATGTTACATGAAGT+TGG 0.479142 7_4:+39468357 None:intergenic
CCACTATACAATCAGGTTGA+AGG 0.480702 7_4:+39468033 None:intergenic
CTGGTTTGCCAATGATTACA+TGG 0.485323 7_4:-39467236 Msa1153170:CDS
CATAGAGGAGCTTGGAAAAG+AGG 0.489248 7_4:-39467589 Msa1153170:CDS
ATTAGCATGTGTAGCTATGA+TGG 0.492761 7_4:+39468259 None:intergenic
ATCATAGGATTCATATGGCC+AGG 0.495465 7_4:+39468323 None:intergenic
TGTCAATCATAGGATTCATA+TGG 0.497162 7_4:+39468318 None:intergenic
GGCCAATAGGGGACGCATAG+AGG 0.500735 7_4:-39467604 Msa1153170:CDS
GATCAAATCAGCTGCACAGT+TGG 0.506852 7_4:+39467926 None:intergenic
CAGTTCCCTTCAGCTCAAGT+TGG 0.509931 7_4:-39468167 Msa1153170:CDS
AAACTTGGTAACACTAGCAT+GGG 0.516760 7_4:-39467687 Msa1153170:CDS
GCTCAAGTTGGTCTCCCTGA+TGG 0.517552 7_4:-39468155 Msa1153170:CDS
ATATCTGCCACTATACAATC+AGG 0.517560 7_4:+39468026 None:intergenic
CCTTCAACCTGATTGTATAG+TGG 0.522287 7_4:-39468033 Msa1153170:CDS
GTGTAGGACCAGTTTCATCA+TGG 0.529814 7_4:-39467650 Msa1153170:CDS
GGGAGACCAACTTGAGCTGA+AGG 0.537026 7_4:+39468161 None:intergenic
ACTCTTGAAAGCATAAATGC+TGG 0.540537 7_4:-39467255 Msa1153170:CDS
AGCTTGGAAAAGAGGCAGAC+TGG 0.544212 7_4:-39467581 Msa1153170:CDS
TTTATTCCACATCCAAGTCC+TGG 0.545486 7_4:-39468341 Msa1153170:CDS
TGGCAGATATGATGCAGCCT+TGG 0.546187 7_4:-39468013 Msa1153170:CDS
TTGAAAATAGCGGTCCCAGT+TGG 0.552478 7_4:-39467165 Msa1153170:CDS
AGGGGACGCATAGAGGAGCT+TGG 0.552547 7_4:-39467597 Msa1153170:CDS
CAGCTTGTAGAAATTGCACA+TGG 0.554057 7_4:-39467480 Msa1153170:CDS
TAAAATTGATCACCAAACAT+TGG 0.555751 7_4:+39467213 None:intergenic
AGGATGAGAGCAAAGAAACT+TGG 0.556623 7_4:-39467024 Msa1153170:CDS
ATATGGCCAGGACTTGGATG+TGG 0.558704 7_4:+39468335 None:intergenic
CACTAGTAGTGAAGATGTAG+TGG 0.560380 7_4:-39467115 Msa1153170:CDS
GGGATCAAATCTTGGAGTGT+AGG 0.562776 7_4:-39467666 Msa1153170:CDS
AGTTTCATCATGGGCTAACA+AGG 0.565109 7_4:-39467640 Msa1153170:CDS
GCAAAGCCTCAATCGAATCT+CGG 0.567576 7_4:+39468063 None:intergenic
ACCAAGAGAGCATAGAAATG+AGG 0.567592 7_4:-39467044 Msa1153170:CDS
AAAACTTGGTAACACTAGCA+TGG 0.567971 7_4:-39467688 Msa1153170:CDS
GCCGAACAAGCTGCAAAACT+AGG 0.572298 7_4:-39467987 Msa1153170:CDS
GGAGTCATCTCAATTGTATG+AGG 0.575171 7_4:+39467840 None:intergenic
ATGAGAGCAAAGAAACTTGG+TGG 0.579643 7_4:-39467021 Msa1153170:CDS
TCCAAAACTTACATACAGTA+CGG 0.588823 7_4:+39467527 None:intergenic
GCAAGATTATTTGCTATGCA+TGG 0.591125 7_4:-39468293 Msa1153170:CDS
TCAATTGTATGAGGAAAGCA+AGG 0.593831 7_4:+39467849 None:intergenic
CTCGGAGCATGTATGTTCCA+AGG 0.595823 7_4:+39468081 None:intergenic
CGATTGTGACTCACTGTGGT+TGG 0.596624 7_4:-39467284 Msa1153170:CDS
TCACAATCGCTCCTGTTGCA+GGG 0.607145 7_4:+39467298 None:intergenic
TGTAGGACCAGTTTCATCAT+GGG 0.610009 7_4:-39467649 Msa1153170:CDS
CATGCTCCGAGATTCGATTG+AGG 0.616793 7_4:-39468069 Msa1153170:CDS
TTGAAGAAATCTAAAGCACT+CGG 0.618950 7_4:-39466922 Msa1153170:CDS
TCAGAAACTAAATTATCTTG+AGG 0.621230 7_4:+39467891 None:intergenic
GGAGACCAACTTGAGCTGAA+GGG 0.621494 7_4:+39468162 None:intergenic
TGCTGCCAAGAAGACTATAG+AGG 0.625798 7_4:-39466998 Msa1153170:CDS
GCCAAGAAGACTATAGAGGA+AGG 0.629164 7_4:-39466994 Msa1153170:CDS
TGATCCAATATAAGGAGCTG+TGG 0.637868 7_4:+39467321 None:intergenic
ATCCAATTAGGAAGCTGCAG+AGG 0.646580 7_4:+39467819 None:intergenic
AAGAAGACTATAGAGGAAGG+TGG 0.651484 7_4:-39466991 Msa1153170:CDS
GCTTCAAAATAGTCAGTGTG+AGG 0.660374 7_4:+39467783 None:intergenic
AGCTTGTAGAAATTGCACAT+GGG 0.669891 7_4:-39467479 Msa1153170:CDS
GAAAAGGGAAGAGATAGCGA+AGG 0.701723 7_4:-39467091 Msa1153170:CDS
AACTTGGTAACACTAGCATG+GGG 0.721407 7_4:-39467686 Msa1153170:CDS
GGAGCGATTGTGACTCACTG+TGG 0.787881 7_4:-39467288 Msa1153170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAATACAACAAAAAAT+CGG - chr7_4:39467182-39467201 Msa1153170:CDS 15.0%
!!! TTTGAAATACAACAAAAAAT+CGG - chr7_4:39467182-39467201 Msa1153170:CDS 15.0%
!!! GAATAAGTTGAGTTTTAATA+GGG + chr7_4:39467100-39467119 None:intergenic 20.0%
!!! TGAATAAGTTGAGTTTTAAT+AGG + chr7_4:39467101-39467120 None:intergenic 20.0%
!!! GAATAAGTTGAGTTTTAATA+GGG + chr7_4:39467100-39467119 None:intergenic 20.0%
!!! TGAATAAGTTGAGTTTTAAT+AGG + chr7_4:39467101-39467120 None:intergenic 20.0%
! GAATAAATGTTACATGAAGT+TGG + chr7_4:39466932-39466951 None:intergenic 25.0%
!!! ATTCCAAGAATTCACTTTTA+CGG - chr7_4:39467323-39467342 Msa1153170:CDS 25.0%
! TCAGAAACTAAATTATCTTG+AGG + chr7_4:39467398-39467417 None:intergenic 25.0%
!! ATACAATAGTTTTCATGAAC+TGG - chr7_4:39467562-39467581 Msa1153170:CDS 25.0%
! GAAAGTGATTATCAAAAACT+TGG - chr7_4:39467584-39467603 Msa1153170:CDS 25.0%
! TAACAAGGATAATGAGAAAA+AGG - chr7_4:39467661-39467680 Msa1153170:CDS 25.0%
!! ATTCAGGTCATAATTTTATC+TGG - chr7_4:39467837-39467856 Msa1153170:CDS 25.0%
!! TTCAGGTCATAATTTTATCT+GGG - chr7_4:39467838-39467857 Msa1153170:CDS 25.0%
!! ATAATTTTATCTGGGTTGTA+AGG - chr7_4:39467846-39467865 Msa1153170:CDS 25.0%
! TAAAATTGATCACCAAACAT+TGG + chr7_4:39468076-39468095 None:intergenic 25.0%
! GAATAAATGTTACATGAAGT+TGG + chr7_4:39466932-39466951 None:intergenic 25.0%
!!! ATTCCAAGAATTCACTTTTA+CGG - chr7_4:39467323-39467342 Msa1153170:CDS 25.0%
! TCAGAAACTAAATTATCTTG+AGG + chr7_4:39467398-39467417 None:intergenic 25.0%
!! ATACAATAGTTTTCATGAAC+TGG - chr7_4:39467562-39467581 Msa1153170:CDS 25.0%
! GAAAGTGATTATCAAAAACT+TGG - chr7_4:39467584-39467603 Msa1153170:CDS 25.0%
! TAACAAGGATAATGAGAAAA+AGG - chr7_4:39467661-39467680 Msa1153170:CDS 25.0%
!! ATTCAGGTCATAATTTTATC+TGG - chr7_4:39467837-39467856 Msa1153170:CDS 25.0%
!! TTCAGGTCATAATTTTATCT+GGG - chr7_4:39467838-39467857 Msa1153170:CDS 25.0%
!! ATAATTTTATCTGGGTTGTA+AGG - chr7_4:39467846-39467865 Msa1153170:CDS 25.0%
! TAAAATTGATCACCAAACAT+TGG + chr7_4:39468076-39468095 None:intergenic 25.0%
! TGTTACATGAAGTTGGTTAT+GGG + chr7_4:39466925-39466944 None:intergenic 30.0%
! ATGTTACATGAAGTTGGTTA+TGG + chr7_4:39466926-39466945 None:intergenic 30.0%
TGTCAATCATAGGATTCATA+TGG + chr7_4:39466971-39466990 None:intergenic 30.0%
GAATCACAGAGAAAAAGTTA+TGG - chr7_4:39467533-39467552 Msa1153170:CDS 30.0%
ATAATGAGAAAAAGGCCAAT+AGG - chr7_4:39467669-39467688 Msa1153170:CDS 30.0%
TAATGAGAAAAAGGCCAATA+GGG - chr7_4:39467670-39467689 Msa1153170:CDS 30.0%
TCCAAAACTTACATACAGTA+CGG + chr7_4:39467762-39467781 None:intergenic 30.0%
! CAATTTCCTTCAAGATTTTG+AGG - chr7_4:39467895-39467914 Msa1153170:CDS 30.0%
AAGGATGAAAGAAAGCAAAA+AGG - chr7_4:39467919-39467938 Msa1153170:CDS 30.0%
AGGATGAAAGAAAGCAAAAA+GGG - chr7_4:39467920-39467939 Msa1153170:CDS 30.0%
!!! CGTTGATGTTTTGAAAATAG+CGG - chr7_4:39468111-39468130 Msa1153170:CDS 30.0%
GAGCAATAGAAAACAAGTTA+TGG - chr7_4:39468143-39468162 Msa1153170:CDS 30.0%
!! AAGGCTGTAAAGATTTTGAT+GGG - chr7_4:39468214-39468233 Msa1153170:CDS 30.0%
! TTGAAGAAATCTAAAGCACT+CGG - chr7_4:39468364-39468383 Msa1153170:CDS 30.0%
! TGTTACATGAAGTTGGTTAT+GGG + chr7_4:39466925-39466944 None:intergenic 30.0%
! ATGTTACATGAAGTTGGTTA+TGG + chr7_4:39466926-39466945 None:intergenic 30.0%
TGTCAATCATAGGATTCATA+TGG + chr7_4:39466971-39466990 None:intergenic 30.0%
GAATCACAGAGAAAAAGTTA+TGG - chr7_4:39467533-39467552 Msa1153170:CDS 30.0%
ATAATGAGAAAAAGGCCAAT+AGG - chr7_4:39467669-39467688 Msa1153170:CDS 30.0%
TAATGAGAAAAAGGCCAATA+GGG - chr7_4:39467670-39467689 Msa1153170:CDS 30.0%
TCCAAAACTTACATACAGTA+CGG + chr7_4:39467762-39467781 None:intergenic 30.0%
! CAATTTCCTTCAAGATTTTG+AGG - chr7_4:39467895-39467914 Msa1153170:CDS 30.0%
AAGGATGAAAGAAAGCAAAA+AGG - chr7_4:39467919-39467938 Msa1153170:CDS 30.0%
AGGATGAAAGAAAGCAAAAA+GGG - chr7_4:39467920-39467939 Msa1153170:CDS 30.0%
!!! CGTTGATGTTTTGAAAATAG+CGG - chr7_4:39468111-39468130 Msa1153170:CDS 30.0%
GAGCAATAGAAAACAAGTTA+TGG - chr7_4:39468143-39468162 Msa1153170:CDS 30.0%
!! AAGGCTGTAAAGATTTTGAT+GGG - chr7_4:39468214-39468233 Msa1153170:CDS 30.0%
! TTGAAGAAATCTAAAGCACT+CGG - chr7_4:39468364-39468383 Msa1153170:CDS 30.0%
AATCTTGCAGTGTCAATCAT+AGG + chr7_4:39466981-39467000 None:intergenic 35.0%
!! GCAAGATTATTTGCTATGCA+TGG - chr7_4:39466993-39467012 Msa1153170:CDS 35.0%
ATTAGCATGTGTAGCTATGA+TGG + chr7_4:39467030-39467049 None:intergenic 35.0%
!!! TATGGCTTTTTGGAATGTTG+AGG + chr7_4:39467054-39467073 None:intergenic 35.0%
TGAATTGAAGTCACTGTCTA+TGG + chr7_4:39467072-39467091 None:intergenic 35.0%
ATAGACAGTGACTTCAATTC+AGG - chr7_4:39467071-39467090 Msa1153170:CDS 35.0%
! TGAAGTTTTCAACACCATCA+GGG + chr7_4:39467148-39467167 None:intergenic 35.0%
! TTGAAGTTTTCAACACCATC+AGG + chr7_4:39467149-39467168 None:intergenic 35.0%
ATACAACAAAAAATCGGCCT+TGG - chr7_4:39467188-39467207 Msa1153170:CDS 35.0%
ATATCTGCCACTATACAATC+AGG + chr7_4:39467263-39467282 None:intergenic 35.0%
AAGCCGTAAAAGTGAATTCT+TGG + chr7_4:39467329-39467348 None:intergenic 35.0%
TCAATTGTATGAGGAAAGCA+AGG + chr7_4:39467440-39467459 None:intergenic 35.0%
CTCTTTGTCCTTATCCAATT+AGG + chr7_4:39467482-39467501 None:intergenic 35.0%
! AAAACTTGGTAACACTAGCA+TGG - chr7_4:39467598-39467617 Msa1153170:CDS 35.0%
! AAACTTGGTAACACTAGCAT+GGG - chr7_4:39467599-39467618 Msa1153170:CDS 35.0%
AATGAGAAAAAGGCCAATAG+GGG - chr7_4:39467671-39467690 Msa1153170:CDS 35.0%
! TCCGTACTGTATGTAAGTTT+TGG - chr7_4:39467758-39467777 Msa1153170:CDS 35.0%
!!! TAAGTTTTGGAAGTCTAGCT+AGG - chr7_4:39467771-39467790 Msa1153170:CDS 35.0%
AGCTTGTAGAAATTGCACAT+GGG - chr7_4:39467807-39467826 Msa1153170:CDS 35.0%
TATCTGGGTTGTAAGGAAAA+AGG - chr7_4:39467853-39467872 Msa1153170:CDS 35.0%
ATCTGGGTTGTAAGGAAAAA+GGG - chr7_4:39467854-39467873 Msa1153170:CDS 35.0%
!! TCCTTCAAGATTTTGAGGAA+AGG - chr7_4:39467900-39467919 Msa1153170:CDS 35.0%
TCCTTTCCTCAAAATCTTGA+AGG + chr7_4:39467904-39467923 None:intergenic 35.0%
GCAAAAAGGGCTATATCATA+TGG - chr7_4:39467933-39467952 Msa1153170:CDS 35.0%
AGGGCTATATCATATGGAAT+TGG - chr7_4:39467939-39467958 Msa1153170:CDS 35.0%
GGGCTATATCATATGGAATT+GGG - chr7_4:39467940-39467959 Msa1153170:CDS 35.0%
! ACTCTTGAAAGCATAAATGC+TGG - chr7_4:39468031-39468050 Msa1153170:CDS 35.0%
AACATTGGCCATGTAATCAT+TGG + chr7_4:39468061-39468080 None:intergenic 35.0%
ATGATTACATGGCCAATGTT+TGG - chr7_4:39468061-39468080 Msa1153170:CDS 35.0%
! TGTTTTCTATTGCTCCAACT+GGG + chr7_4:39468138-39468157 None:intergenic 35.0%
! TTGTTTTCTATTGCTCCAAC+TGG + chr7_4:39468139-39468158 None:intergenic 35.0%
TGAAGATGTAGTGGTGAAAA+GGG - chr7_4:39468180-39468199 Msa1153170:CDS 35.0%
! GAAGGCTGTAAAGATTTTGA+TGG - chr7_4:39468213-39468232 Msa1153170:CDS 35.0%
AATCTTGCAGTGTCAATCAT+AGG + chr7_4:39466981-39467000 None:intergenic 35.0%
!! GCAAGATTATTTGCTATGCA+TGG - chr7_4:39466993-39467012 Msa1153170:CDS 35.0%
ATTAGCATGTGTAGCTATGA+TGG + chr7_4:39467030-39467049 None:intergenic 35.0%
!!! TATGGCTTTTTGGAATGTTG+AGG + chr7_4:39467054-39467073 None:intergenic 35.0%
TGAATTGAAGTCACTGTCTA+TGG + chr7_4:39467072-39467091 None:intergenic 35.0%
ATAGACAGTGACTTCAATTC+AGG - chr7_4:39467071-39467090 Msa1153170:CDS 35.0%
! TGAAGTTTTCAACACCATCA+GGG + chr7_4:39467148-39467167 None:intergenic 35.0%
! TTGAAGTTTTCAACACCATC+AGG + chr7_4:39467149-39467168 None:intergenic 35.0%
ATACAACAAAAAATCGGCCT+TGG - chr7_4:39467188-39467207 Msa1153170:CDS 35.0%
ATATCTGCCACTATACAATC+AGG + chr7_4:39467263-39467282 None:intergenic 35.0%
AAGCCGTAAAAGTGAATTCT+TGG + chr7_4:39467329-39467348 None:intergenic 35.0%
TCAATTGTATGAGGAAAGCA+AGG + chr7_4:39467440-39467459 None:intergenic 35.0%
CTCTTTGTCCTTATCCAATT+AGG + chr7_4:39467482-39467501 None:intergenic 35.0%
! AAAACTTGGTAACACTAGCA+TGG - chr7_4:39467598-39467617 Msa1153170:CDS 35.0%
! AAACTTGGTAACACTAGCAT+GGG - chr7_4:39467599-39467618 Msa1153170:CDS 35.0%
AATGAGAAAAAGGCCAATAG+GGG - chr7_4:39467671-39467690 Msa1153170:CDS 35.0%
! TCCGTACTGTATGTAAGTTT+TGG - chr7_4:39467758-39467777 Msa1153170:CDS 35.0%
!!! TAAGTTTTGGAAGTCTAGCT+AGG - chr7_4:39467771-39467790 Msa1153170:CDS 35.0%
AGCTTGTAGAAATTGCACAT+GGG - chr7_4:39467807-39467826 Msa1153170:CDS 35.0%
TATCTGGGTTGTAAGGAAAA+AGG - chr7_4:39467853-39467872 Msa1153170:CDS 35.0%
ATCTGGGTTGTAAGGAAAAA+GGG - chr7_4:39467854-39467873 Msa1153170:CDS 35.0%
!! TCCTTCAAGATTTTGAGGAA+AGG - chr7_4:39467900-39467919 Msa1153170:CDS 35.0%
TCCTTTCCTCAAAATCTTGA+AGG + chr7_4:39467904-39467923 None:intergenic 35.0%
GCAAAAAGGGCTATATCATA+TGG - chr7_4:39467933-39467952 Msa1153170:CDS 35.0%
AGGGCTATATCATATGGAAT+TGG - chr7_4:39467939-39467958 Msa1153170:CDS 35.0%
GGGCTATATCATATGGAATT+GGG - chr7_4:39467940-39467959 Msa1153170:CDS 35.0%
! ACTCTTGAAAGCATAAATGC+TGG - chr7_4:39468031-39468050 Msa1153170:CDS 35.0%
AACATTGGCCATGTAATCAT+TGG + chr7_4:39468061-39468080 None:intergenic 35.0%
ATGATTACATGGCCAATGTT+TGG - chr7_4:39468061-39468080 Msa1153170:CDS 35.0%
! TGTTTTCTATTGCTCCAACT+GGG + chr7_4:39468138-39468157 None:intergenic 35.0%
! TTGTTTTCTATTGCTCCAAC+TGG + chr7_4:39468139-39468158 None:intergenic 35.0%
TGAAGATGTAGTGGTGAAAA+GGG - chr7_4:39468180-39468199 Msa1153170:CDS 35.0%
! GAAGGCTGTAAAGATTTTGA+TGG - chr7_4:39468213-39468232 Msa1153170:CDS 35.0%
TTTATTCCACATCCAAGTCC+TGG - chr7_4:39466945-39466964 Msa1153170:CDS 40.0%
ATCATAGGATTCATATGGCC+AGG + chr7_4:39466966-39466985 None:intergenic 40.0%
! AGTCACTGTCTATGGCTTTT+TGG + chr7_4:39467064-39467083 None:intergenic 40.0%
!! CCACTATACAATCAGGTTGA+AGG + chr7_4:39467256-39467275 None:intergenic 40.0%
CCTTCAACCTGATTGTATAG+TGG - chr7_4:39467253-39467272 Msa1153170:CDS 40.0%
!!! ACCTAGTTTTGCAGCTTGTT+CGG + chr7_4:39467303-39467322 None:intergenic 40.0%
GGAGTCATCTCAATTGTATG+AGG + chr7_4:39467449-39467468 None:intergenic 40.0%
TGCAGCTTCCTAATTGGATA+AGG - chr7_4:39467471-39467490 Msa1153170:CDS 40.0%
GCTTCAAAATAGTCAGTGTG+AGG + chr7_4:39467506-39467525 None:intergenic 40.0%
! AACTTGGTAACACTAGCATG+GGG - chr7_4:39467600-39467619 Msa1153170:CDS 40.0%
TGTAGGACCAGTTTCATCAT+GGG - chr7_4:39467637-39467656 Msa1153170:CDS 40.0%
TTGTTAGCCCATGATGAAAC+TGG + chr7_4:39467647-39467666 None:intergenic 40.0%
! AGTTTCATCATGGGCTAACA+AGG - chr7_4:39467646-39467665 Msa1153170:CDS 40.0%
! AAGAGGCAGACTGGTTAAAT+TGG - chr7_4:39467714-39467733 Msa1153170:CDS 40.0%
CAGCTTGTAGAAATTGCACA+TGG - chr7_4:39467806-39467825 Msa1153170:CDS 40.0%
TCTGGGTTGTAAGGAAAAAG+GGG - chr7_4:39467855-39467874 Msa1153170:CDS 40.0%
TGATCCAATATAAGGAGCTG+TGG + chr7_4:39467968-39467987 None:intergenic 40.0%
TTGCAGGGTGATCCAATATA+AGG + chr7_4:39467976-39467995 None:intergenic 40.0%
! CTGGTTTGCCAATGATTACA+TGG - chr7_4:39468050-39468069 Msa1153170:CDS 40.0%
CACTAGTAGTGAAGATGTAG+TGG - chr7_4:39468171-39468190 Msa1153170:CDS 40.0%
GTGAAGATGTAGTGGTGAAA+AGG - chr7_4:39468179-39468198 Msa1153170:CDS 40.0%
! ACCAAGAGAGCATAGAAATG+AGG - chr7_4:39468242-39468261 Msa1153170:CDS 40.0%
TCCTCATTTCTATGCTCTCT+TGG + chr7_4:39468246-39468265 None:intergenic 40.0%
AGGATGAGAGCAAAGAAACT+TGG - chr7_4:39468262-39468281 Msa1153170:CDS 40.0%
ATGAGAGCAAAGAAACTTGG+TGG - chr7_4:39468265-39468284 Msa1153170:CDS 40.0%
ACCTTCCTCTATAGTCTTCT+TGG + chr7_4:39468296-39468315 None:intergenic 40.0%
AAGAAGACTATAGAGGAAGG+TGG - chr7_4:39468295-39468314 Msa1153170:CDS 40.0%
TTTATTCCACATCCAAGTCC+TGG - chr7_4:39466945-39466964 Msa1153170:CDS 40.0%
ATCATAGGATTCATATGGCC+AGG + chr7_4:39466966-39466985 None:intergenic 40.0%
! AGTCACTGTCTATGGCTTTT+TGG + chr7_4:39467064-39467083 None:intergenic 40.0%
!! CCACTATACAATCAGGTTGA+AGG + chr7_4:39467256-39467275 None:intergenic 40.0%
CCTTCAACCTGATTGTATAG+TGG - chr7_4:39467253-39467272 Msa1153170:CDS 40.0%
!!! ACCTAGTTTTGCAGCTTGTT+CGG + chr7_4:39467303-39467322 None:intergenic 40.0%
GGAGTCATCTCAATTGTATG+AGG + chr7_4:39467449-39467468 None:intergenic 40.0%
TGCAGCTTCCTAATTGGATA+AGG - chr7_4:39467471-39467490 Msa1153170:CDS 40.0%
GCTTCAAAATAGTCAGTGTG+AGG + chr7_4:39467506-39467525 None:intergenic 40.0%
! AACTTGGTAACACTAGCATG+GGG - chr7_4:39467600-39467619 Msa1153170:CDS 40.0%
TGTAGGACCAGTTTCATCAT+GGG - chr7_4:39467637-39467656 Msa1153170:CDS 40.0%
TTGTTAGCCCATGATGAAAC+TGG + chr7_4:39467647-39467666 None:intergenic 40.0%
! AGTTTCATCATGGGCTAACA+AGG - chr7_4:39467646-39467665 Msa1153170:CDS 40.0%
! AAGAGGCAGACTGGTTAAAT+TGG - chr7_4:39467714-39467733 Msa1153170:CDS 40.0%
CAGCTTGTAGAAATTGCACA+TGG - chr7_4:39467806-39467825 Msa1153170:CDS 40.0%
TCTGGGTTGTAAGGAAAAAG+GGG - chr7_4:39467855-39467874 Msa1153170:CDS 40.0%
TGATCCAATATAAGGAGCTG+TGG + chr7_4:39467968-39467987 None:intergenic 40.0%
TTGCAGGGTGATCCAATATA+AGG + chr7_4:39467976-39467995 None:intergenic 40.0%
! CTGGTTTGCCAATGATTACA+TGG - chr7_4:39468050-39468069 Msa1153170:CDS 40.0%
CACTAGTAGTGAAGATGTAG+TGG - chr7_4:39468171-39468190 Msa1153170:CDS 40.0%
GTGAAGATGTAGTGGTGAAA+AGG - chr7_4:39468179-39468198 Msa1153170:CDS 40.0%
! ACCAAGAGAGCATAGAAATG+AGG - chr7_4:39468242-39468261 Msa1153170:CDS 40.0%
TCCTCATTTCTATGCTCTCT+TGG + chr7_4:39468246-39468265 None:intergenic 40.0%
AGGATGAGAGCAAAGAAACT+TGG - chr7_4:39468262-39468281 Msa1153170:CDS 40.0%
ATGAGAGCAAAGAAACTTGG+TGG - chr7_4:39468265-39468284 Msa1153170:CDS 40.0%
ACCTTCCTCTATAGTCTTCT+TGG + chr7_4:39468296-39468315 None:intergenic 40.0%
AAGAAGACTATAGAGGAAGG+TGG - chr7_4:39468295-39468314 Msa1153170:CDS 40.0%
GCAAAGCCTCAATCGAATCT+CGG + chr7_4:39467226-39467245 None:intergenic 45.0%
!! TAGTTTTGCAGCTTGTTCGG+CGG + chr7_4:39467300-39467319 None:intergenic 45.0%
GATCAAATCAGCTGCACAGT+TGG + chr7_4:39467363-39467382 None:intergenic 45.0%
ATCCAATTAGGAAGCTGCAG+AGG + chr7_4:39467470-39467489 None:intergenic 45.0%
CTAGCATGGGGATCAAATCT+TGG - chr7_4:39467612-39467631 Msa1153170:CDS 45.0%
GGGATCAAATCTTGGAGTGT+AGG - chr7_4:39467620-39467639 Msa1153170:CDS 45.0%
GTGTAGGACCAGTTTCATCA+TGG - chr7_4:39467636-39467655 Msa1153170:CDS 45.0%
CATAGAGGAGCTTGGAAAAG+AGG - chr7_4:39467697-39467716 Msa1153170:CDS 45.0%
GCACATGGGCTTGAAAATTC+AGG - chr7_4:39467821-39467840 Msa1153170:CDS 45.0%
GGTTGTAAGGAAAAAGGGGA+GGG - chr7_4:39467859-39467878 Msa1153170:CDS 45.0%
TAAGGAAAAAGGGGAGGGAT+GGG - chr7_4:39467864-39467883 Msa1153170:CDS 45.0%
ATATTGGATCACCCTGCAAC+AGG - chr7_4:39467977-39467996 Msa1153170:CDS 45.0%
TTGAAAATAGCGGTCCCAGT+TGG - chr7_4:39468121-39468140 Msa1153170:CDS 45.0%
GAAAAGGGAAGAGATAGCGA+AGG - chr7_4:39468195-39468214 Msa1153170:CDS 45.0%
TGCTGCCAAGAAGACTATAG+AGG - chr7_4:39468288-39468307 Msa1153170:CDS 45.0%
GCCAAGAAGACTATAGAGGA+AGG - chr7_4:39468292-39468311 Msa1153170:CDS 45.0%
GCAAAGCCTCAATCGAATCT+CGG + chr7_4:39467226-39467245 None:intergenic 45.0%
!! TAGTTTTGCAGCTTGTTCGG+CGG + chr7_4:39467300-39467319 None:intergenic 45.0%
GATCAAATCAGCTGCACAGT+TGG + chr7_4:39467363-39467382 None:intergenic 45.0%
ATCCAATTAGGAAGCTGCAG+AGG + chr7_4:39467470-39467489 None:intergenic 45.0%
CTAGCATGGGGATCAAATCT+TGG - chr7_4:39467612-39467631 Msa1153170:CDS 45.0%
GGGATCAAATCTTGGAGTGT+AGG - chr7_4:39467620-39467639 Msa1153170:CDS 45.0%
GTGTAGGACCAGTTTCATCA+TGG - chr7_4:39467636-39467655 Msa1153170:CDS 45.0%
CATAGAGGAGCTTGGAAAAG+AGG - chr7_4:39467697-39467716 Msa1153170:CDS 45.0%
GCACATGGGCTTGAAAATTC+AGG - chr7_4:39467821-39467840 Msa1153170:CDS 45.0%
GGTTGTAAGGAAAAAGGGGA+GGG - chr7_4:39467859-39467878 Msa1153170:CDS 45.0%
TAAGGAAAAAGGGGAGGGAT+GGG - chr7_4:39467864-39467883 Msa1153170:CDS 45.0%
ATATTGGATCACCCTGCAAC+AGG - chr7_4:39467977-39467996 Msa1153170:CDS 45.0%
TTGAAAATAGCGGTCCCAGT+TGG - chr7_4:39468121-39468140 Msa1153170:CDS 45.0%
GAAAAGGGAAGAGATAGCGA+AGG - chr7_4:39468195-39468214 Msa1153170:CDS 45.0%
TGCTGCCAAGAAGACTATAG+AGG - chr7_4:39468288-39468307 Msa1153170:CDS 45.0%
GCCAAGAAGACTATAGAGGA+AGG - chr7_4:39468292-39468311 Msa1153170:CDS 45.0%
ATATGGCCAGGACTTGGATG+TGG + chr7_4:39466954-39466973 None:intergenic 50.0%
GGATTCATATGGCCAGGACT+TGG + chr7_4:39466960-39466979 None:intergenic 50.0%
CAGTTCCCTTCAGCTCAAGT+TGG - chr7_4:39467119-39467138 Msa1153170:CDS 50.0%
GGAGACCAACTTGAGCTGAA+GGG + chr7_4:39467127-39467146 None:intergenic 50.0%
CTCGGAGCATGTATGTTCCA+AGG + chr7_4:39467208-39467227 None:intergenic 50.0%
CATGCTCCGAGATTCGATTG+AGG - chr7_4:39467217-39467236 Msa1153170:CDS 50.0%
TGGCAGATATGATGCAGCCT+TGG - chr7_4:39467273-39467292 Msa1153170:CDS 50.0%
GCCGAACAAGCTGCAAAACT+AGG - chr7_4:39467299-39467318 Msa1153170:CDS 50.0%
CTCCTCTGCAGCTTCCTAAT+TGG - chr7_4:39467465-39467484 Msa1153170:CDS 50.0%
AGCTTGGAAAAGAGGCAGAC+TGG - chr7_4:39467705-39467724 Msa1153170:CDS 50.0%
GGGTTGTAAGGAAAAAGGGG+AGG - chr7_4:39467858-39467877 Msa1153170:CDS 50.0%
GTAAGGAAAAAGGGGAGGGA+TGG - chr7_4:39467863-39467882 Msa1153170:CDS 50.0%
GGCACCACAGCTCCTTATAT+TGG - chr7_4:39467961-39467980 Msa1153170:CDS 50.0%
TCACAATCGCTCCTGTTGCA+GGG + chr7_4:39467991-39468010 None:intergenic 50.0%
CGATTGTGACTCACTGTGGT+TGG - chr7_4:39468002-39468021 Msa1153170:CDS 50.0%
ATATGGCCAGGACTTGGATG+TGG + chr7_4:39466954-39466973 None:intergenic 50.0%
GGATTCATATGGCCAGGACT+TGG + chr7_4:39466960-39466979 None:intergenic 50.0%
CAGTTCCCTTCAGCTCAAGT+TGG - chr7_4:39467119-39467138 Msa1153170:CDS 50.0%
GGAGACCAACTTGAGCTGAA+GGG + chr7_4:39467127-39467146 None:intergenic 50.0%
CTCGGAGCATGTATGTTCCA+AGG + chr7_4:39467208-39467227 None:intergenic 50.0%
CATGCTCCGAGATTCGATTG+AGG - chr7_4:39467217-39467236 Msa1153170:CDS 50.0%
TGGCAGATATGATGCAGCCT+TGG - chr7_4:39467273-39467292 Msa1153170:CDS 50.0%
GCCGAACAAGCTGCAAAACT+AGG - chr7_4:39467299-39467318 Msa1153170:CDS 50.0%
CTCCTCTGCAGCTTCCTAAT+TGG - chr7_4:39467465-39467484 Msa1153170:CDS 50.0%
AGCTTGGAAAAGAGGCAGAC+TGG - chr7_4:39467705-39467724 Msa1153170:CDS 50.0%
GGGTTGTAAGGAAAAAGGGG+AGG - chr7_4:39467858-39467877 Msa1153170:CDS 50.0%
GTAAGGAAAAAGGGGAGGGA+TGG - chr7_4:39467863-39467882 Msa1153170:CDS 50.0%
GGCACCACAGCTCCTTATAT+TGG - chr7_4:39467961-39467980 Msa1153170:CDS 50.0%
TCACAATCGCTCCTGTTGCA+GGG + chr7_4:39467991-39468010 None:intergenic 50.0%
CGATTGTGACTCACTGTGGT+TGG - chr7_4:39468002-39468021 Msa1153170:CDS 50.0%
GGGAGACCAACTTGAGCTGA+AGG + chr7_4:39467128-39467147 None:intergenic 55.0%
!! GCTCAAGTTGGTCTCCCTGA+TGG - chr7_4:39467131-39467150 Msa1153170:CDS 55.0%
CTCCTCTATGCGTCCCCTAT+TGG + chr7_4:39467687-39467706 None:intergenic 55.0%
GTCACAATCGCTCCTGTTGC+AGG + chr7_4:39467992-39468011 None:intergenic 55.0%
GGAGCGATTGTGACTCACTG+TGG - chr7_4:39467998-39468017 Msa1153170:CDS 55.0%
GGGAGACCAACTTGAGCTGA+AGG + chr7_4:39467128-39467147 None:intergenic 55.0%
!! GCTCAAGTTGGTCTCCCTGA+TGG - chr7_4:39467131-39467150 Msa1153170:CDS 55.0%
CTCCTCTATGCGTCCCCTAT+TGG + chr7_4:39467687-39467706 None:intergenic 55.0%
GTCACAATCGCTCCTGTTGC+AGG + chr7_4:39467992-39468011 None:intergenic 55.0%
GGAGCGATTGTGACTCACTG+TGG - chr7_4:39467998-39468017 Msa1153170:CDS 55.0%
GGCCAATAGGGGACGCATAG+AGG - chr7_4:39467682-39467701 Msa1153170:CDS 60.0%
AGGGGACGCATAGAGGAGCT+TGG - chr7_4:39467689-39467708 Msa1153170:CDS 60.0%
GGCCAATAGGGGACGCATAG+AGG - chr7_4:39467682-39467701 Msa1153170:CDS 60.0%
AGGGGACGCATAGAGGAGCT+TGG - chr7_4:39467689-39467708 Msa1153170:CDS 60.0%
! GCAGCTTGTTCGGCGGTCCA+AGG + chr7_4:39467293-39467312 None:intergenic 65.0%
! GCAGCTTGTTCGGCGGTCCA+AGG + chr7_4:39467293-39467312 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 39466906 39468402 39466906 ID=Msa1153170;Name=Msa1153170
chr7_4 mRNA 39466906 39468402 39466906 ID=Msa1153170-mRNA-1;Parent=Msa1153170;Name=Msa1153170-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|498
chr7_4 exon 39466906 39468402 39466906 ID=Msa1153170-mRNA-1:exon:9569;Parent=Msa1153170-mRNA-1
chr7_4 CDS 39466906 39468402 39466906 ID=Msa1153170-mRNA-1:cds;Parent=Msa1153170-mRNA-1
Gene Sequence

>Msa1153170

ATGGATTCTCAACAATCCCATAACCAACTTCATGTAACATTTATTCCACATCCAAGTCCTGGCCATATGAATCCTATGATTGACACTGCAAGATTATTTGCTATGCATGGTGTTAATGTTACCATCATAGCTACACATGCTAATGCCTCAACATTCCAAAAAGCCATAGACAGTGACTTCAATTCAGGATACCCTATTAAAACTCAACTTATTCAGTTCCCTTCAGCTCAAGTTGGTCTCCCTGATGGTGTTGAAAACTTCAAAGATGCAACTTCATTTGAAATACAACAAAAAATCGGCCTTGGAACATACATGCTCCGAGATTCGATTGAGGCTTTGCTTCAAGACCTTCAACCTGATTGTATAGTGGCAGATATGATGCAGCCTTGGACCGCCGAACAAGCTGCAAAACTAGGTATTCCAAGAATTCACTTTTACGGCTTAAGCATCTTCTCCAACTGTGCAGCTGATTTGATCATGAAGTATAGACCTCAAGATAATTTAGTTTCTGATACACAGAAATTTACTATTCCTTGCTTTCCTCATACAATTGAGATGACTCCTCTGCAGCTTCCTAATTGGATAAGGACAAAGAGTCCTCACACTGACTATTTTGAAGCAATGTTTGAATCACAGAGAAAAAGTTATGGAACATTATACAATAGTTTTCATGAACTGGAAAGTGATTATCAAAAACTTGGTAACACTAGCATGGGGATCAAATCTTGGAGTGTAGGACCAGTTTCATCATGGGCTAACAAGGATAATGAGAAAAAGGCCAATAGGGGACGCATAGAGGAGCTTGGAAAAGAGGCAGACTGGTTAAATTGGCTTAACTCAAAGCAAAACGAGTCCGTACTGTATGTAAGTTTTGGAAGTCTAGCTAGGCTAACTCATGCTCAGCTTGTAGAAATTGCACATGGGCTTGAAAATTCAGGTCATAATTTTATCTGGGTTGTAAGGAAAAAGGGGAGGGATGGGAGTGAAAACAATTTCCTTCAAGATTTTGAGGAAAGGATGAAAGAAAGCAAAAAGGGCTATATCATATGGAATTGGGCACCACAGCTCCTTATATTGGATCACCCTGCAACAGGAGCGATTGTGACTCACTGTGGTTGGAACTCTACTCTTGAAAGCATAAATGCTGGTTTGCCAATGATTACATGGCCAATGTTTGGTGATCAATTTTACAATGAAAAGTTGCTCGTTGATGTTTTGAAAATAGCGGTCCCAGTTGGAGCAATAGAAAACAAGTTATGGACTAGCACTAGTAGTGAAGATGTAGTGGTGAAAAGGGAAGAGATAGCGAAGGCTGTAAAGATTTTGATGGGAAGTGACCAAGAGAGCATAGAAATGAGGATGAGAGCAAAGAAACTTGGTGGTGCTGCCAAGAAGACTATAGAGGAAGGTGGACACTCTTACAACAACTTGATTCAGATGATTGATGAGCTGAAATCATTGAAGAAATCTAAAGCACTCGGTAATAAAGAAGATTAG

Protein sequence

>Msa1153170

MDSQQSHNQLHVTFIPHPSPGHMNPMIDTARLFAMHGVNVTIIATHANASTFQKAIDSDFNSGYPIKTQLIQFPSAQVGLPDGVENFKDATSFEIQQKIGLGTYMLRDSIEALLQDLQPDCIVADMMQPWTAEQAAKLGIPRIHFYGLSIFSNCAADLIMKYRPQDNLVSDTQKFTIPCFPHTIEMTPLQLPNWIRTKSPHTDYFEAMFESQRKSYGTLYNSFHELESDYQKLGNTSMGIKSWSVGPVSSWANKDNEKKANRGRIEELGKEADWLNWLNSKQNESVLYVSFGSLARLTHAQLVEIAHGLENSGHNFIWVVRKKGRDGSENNFLQDFEERMKESKKGYIIWNWAPQLLILDHPATGAIVTHCGWNSTLESINAGLPMITWPMFGDQFYNEKLLVDVLKIAVPVGAIENKLWTSTSSEDVVVKREEIAKAVKILMGSDQESIEMRMRAKKLGGAAKKTIEEGGHSYNNLIQMIDELKSLKKSKALGNKED*