AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797450 MtrunA17_Chr5g0400781 97.059 272 5 3 1 271 1 270 0.0 528
Msa0797450 MtrunA17_Chr4g0054421 64.360 289 67 9 1 271 1 271 3.11e-98 288
Msa0797450 MtrunA17_Chr2g0308611 70.548 146 40 2 94 237 169 313 1.68e-64 205
Msa0797450 MtrunA17_Chr1g0175651 72.388 134 36 1 104 237 135 267 1.84e-63 201
Msa0797450 MtrunA17_Chr1g0151971 57.868 197 73 6 73 266 83 272 2.61e-63 200
Msa0797450 MtrunA17_Chr5g0399491 59.067 193 66 5 47 237 69 250 1.11e-62 199
Msa0797450 MtrunA17_Chr7g0258831 70.455 132 39 0 106 237 142 273 1.21e-62 199
Msa0797450 MtrunA17_Chr4g0055851 64.242 165 48 5 74 237 80 234 3.67e-61 194
Msa0797450 MtrunA17_Chr8g0335131 61.765 170 55 3 74 235 91 258 5.39e-60 192
Msa0797450 MtrunA17_Chr3g0135331 57.222 180 67 4 93 266 117 292 1.39e-50 168
Msa0797450 MtrunA17_Chr4g0044091 58.955 134 49 1 123 250 64 197 6.30e-48 158
Msa0797450 MtrunA17_Chr2g0299031 52.349 149 67 2 91 238 52 197 9.31e-41 140
Msa0797450 MtrunA17_Chr4g0071411 64.655 116 33 3 126 235 90 203 9.37e-38 132
Msa0797450 MtrunA17_Chr5g0416391 38.411 151 79 2 73 215 24 168 7.42e-20 86.7
Msa0797450 MtrunA17_Chr7g0217111 45.833 96 52 0 115 210 71 166 1.02e-18 83.6
Msa0797450 MtrunA17_Chr8g0362151 42.500 120 62 1 96 215 56 168 1.12e-18 83.6
Msa0797450 MtrunA17_Chr6g0453021 45.794 107 51 1 111 210 83 189 1.51e-18 83.2
Msa0797450 MtrunA17_Chr6g0450991 48.913 92 47 0 124 215 67 158 3.07e-18 82.4
Msa0797450 MtrunA17_Chr5g0415941 40.559 143 72 4 78 211 43 181 8.69e-18 81.6
Msa0797450 MtrunA17_Chr7g0265521 40.187 107 63 1 105 210 43 149 1.66e-16 76.6
Msa0797450 MtrunA17_Chr8g0362751 46.809 94 43 1 124 210 89 182 1.95e-16 77.4
Msa0797450 MtrunA17_Chr3g0119291 47.368 95 43 1 124 211 59 153 4.15e-16 75.9
Msa0797450 MtrunA17_Chr4g0060031 45.833 96 52 0 116 211 87 182 5.20e-16 76.6
Msa0797450 MtrunA17_Chr3g0123691 42.718 103 52 1 116 211 52 154 1.04e-15 75.5
Msa0797450 MtrunA17_Chr8g0381741 46.392 97 45 1 122 211 52 148 1.59e-15 75.1
Msa0797450 MtrunA17_Chr1g0179581 44.186 86 48 0 121 206 25 110 6.61e-15 69.3
Msa0797450 MtrunA17_Chr8g0346251 35.878 131 72 3 128 251 45 170 1.01e-12 66.2
Msa0797450 MtrunA17_Chr3g0127511 43.617 94 52 1 127 220 41 133 5.14e-12 64.3
Msa0797450 MtrunA17_Chr5g0403701 44.000 100 51 1 119 218 48 142 2.07e-11 62.0
Msa0797450 MtrunA17_Chr5g0403691 44.086 93 52 0 119 211 48 140 3.25e-11 61.6
Msa0797450 MtrunA17_Chr5g0410711 32.500 120 81 0 101 220 69 188 4.49e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797450 AT4G37790.1 60.690 290 83 9 1 271 1 278 5.83e-93 276
Msa0797450 AT2G22800.1 57.093 289 91 8 1 271 1 274 1.14e-83 252
Msa0797450 AT5G06710.1 68.707 147 42 2 96 240 162 306 2.52e-65 207
Msa0797450 AT3G60390.1 59.091 176 58 3 74 235 99 274 8.47e-60 192
Msa0797450 AT4G16780.1 66.901 142 45 2 96 236 102 242 1.46e-59 191
Msa0797450 AT2G44910.1 54.822 197 76 4 49 236 84 276 2.78e-57 186
Msa0797450 AT5G47370.1 51.659 211 73 8 74 271 72 266 8.70e-56 181
Msa0797450 AT4G17460.1 55.747 174 66 5 74 237 77 249 3.18e-52 172
Msa0797450 AT2G01430.1 55.556 126 54 1 115 240 130 253 7.36e-41 142
Msa0797450 AT1G70920.2 51.852 135 54 2 116 246 27 154 2.28e-36 127
Msa0797450 AT1G70920.1 53.846 130 49 2 116 241 57 179 2.54e-36 129
Msa0797450 AT5G06710.4 70.732 82 20 2 96 175 162 241 4.40e-29 111
Msa0797450 AT2G01430.2 57.692 78 31 1 115 192 130 205 1.53e-21 90.1
Msa0797450 AT1G26960.1 41.593 113 66 0 116 228 63 175 1.89e-18 82.8
Msa0797450 AT1G69780.1 45.833 96 52 0 116 211 77 172 6.06e-18 82.0
Msa0797450 AT5G15150.1 42.500 120 62 2 98 213 92 208 9.89e-18 81.6
Msa0797450 AT3G01220.1 40.984 122 64 2 96 213 63 180 4.85e-17 79.3
Msa0797450 AT3G01470.1 47.312 93 42 1 124 209 68 160 8.73e-17 78.6
Msa0797450 AT5G65310.1 43.000 100 50 1 119 211 67 166 2.63e-15 74.7
Msa0797450 AT5G65310.2 43.000 100 50 1 119 211 49 148 2.92e-15 74.3
Msa0797450 AT4G40060.1 43.299 97 51 1 122 214 57 153 3.91e-15 74.3
Msa0797450 AT2G22430.1 44.792 96 49 1 122 213 60 155 2.17e-14 72.4
Msa0797450 AT5G03790.1 32.653 147 96 2 124 267 77 223 4.19e-14 70.5
Msa0797450 AT1G27045.4 46.875 96 44 1 124 212 68 163 4.96e-14 70.5
Msa0797450 AT1G27045.1 50.000 88 44 0 124 211 68 155 5.66e-14 69.7
Msa0797450 AT2G46680.1 42.424 99 53 1 121 215 29 127 7.52e-14 70.1
Msa0797450 AT2G46680.2 40.625 96 57 0 121 216 29 124 8.02e-14 70.1
Msa0797450 AT1G27045.5 57.576 66 28 0 124 189 25 90 9.47e-14 68.6
Msa0797450 AT1G27045.3 57.576 66 28 0 124 189 25 90 9.47e-14 68.6
Msa0797450 AT1G27045.2 57.576 66 28 0 124 189 17 82 1.21e-13 67.8
Msa0797450 AT2G18550.1 44.000 100 55 1 112 210 48 147 3.78e-13 67.4
Msa0797450 AT2G36610.1 42.857 98 48 2 123 212 70 167 4.70e-13 66.6
Msa0797450 AT5G03790.2 37.931 116 64 2 124 231 77 192 1.24e-11 62.8
Msa0797450 AT4G36740.1 43.678 87 49 0 124 210 55 141 1.25e-11 63.2
Msa0797450 AT4G36740.2 43.678 87 49 0 124 210 56 142 1.27e-11 63.2
Msa0797450 AT3G61890.1 42.353 85 49 0 127 211 33 117 2.72e-11 62.4

Find 86 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTCAAGTATCAAAATA+TGG 0.178104 5_3:+9601574 Msa0797450:exon
CGTACCTGGCTCTCCGATTC+TGG 0.186509 5_3:-9602214 None:intergenic
GATTCTCTTCACCTTGTTCT+AGG 0.242496 5_3:+9601614 Msa0797450:CDS
AAACATTAACAGACGAAAAT+AGG 0.283618 5_3:+9603027 Msa0797450:CDS
TAATATGGTAAGGTTTATAA+AGG 0.296837 5_3:-9601517 None:intergenic
TGGGTGGGTGGGTGAGTGGG+TGG 0.300359 5_3:-9601441 None:intergenic
GCGTTGGGTGGGTGGGTGAG+TGG 0.302963 5_3:-9601445 None:intergenic
GGATTGTAGAAATGAGTATT+TGG 0.305343 5_3:-9603215 None:intergenic
AAGCAATAGTGATTGTTCTT+TGG 0.306534 5_3:-9601978 None:intergenic
GAATGGAAAATTAGATAATA+TGG 0.323643 5_3:-9601532 None:intergenic
TGGGTGGGTGAGTGGGTGGG+TGG 0.344223 5_3:-9601437 None:intergenic
TGGCTCGTTGGAGGTGGAAT+AGG 0.345900 5_3:-9601699 None:intergenic
CGAAAATAGGAGGCTCAAAA+AGG 0.353329 5_3:+9603040 Msa0797450:CDS
TAGCGAGACAGTTGAATCTA+AGG 0.358273 5_3:+9602168 Msa0797450:CDS
GTGGTGGTAGTTATTTCCTT+TGG 0.358754 5_3:-9601662 None:intergenic
TATAAAGGGTTAGAAGAGAA+AGG 0.396145 5_3:-9601502 None:intergenic
CGTTGGGTGGGTGGGTGAGT+GGG 0.399585 5_3:-9601444 None:intergenic
ATAGGGATTCATGGTGGTGG+TGG 0.418056 5_3:-9601681 None:intergenic
AAGTTCCTCACCATAACCTT+TGG 0.418493 5_3:-9601780 None:intergenic
TATAAACATATAAATACAAT+AGG 0.419834 5_3:-9603445 None:intergenic
GATACTTGAGAGAAGAATGA+AGG 0.425151 5_3:-9601565 None:intergenic
GGGATTCATGGTGGTGGTGG+TGG 0.429866 5_3:-9601678 None:intergenic
AAACAAGCTCCCAAAGGTTA+TGG 0.433046 5_3:+9601770 Msa0797450:CDS
AAGAAGAAGTAGAAGAAGAG+AGG 0.435022 5_3:+9601891 Msa0797450:CDS
GGCTCGTTGGAGGTGGAATA+GGG 0.435231 5_3:-9601698 None:intergenic
GGCCGCGACAAGTTGAAGTA+TGG 0.440361 5_3:+9602189 Msa0797450:CDS
GTTAATTCATCTTTCTCAAG+TGG 0.450640 5_3:+9601833 Msa0797450:CDS
TCCTTAACGTTAGGACTCTC+TGG 0.452116 5_3:+9601722 Msa0797450:CDS
TGAGAGAAGAATGAAGGAGG+TGG 0.453368 5_3:-9601559 None:intergenic
ACCAGAGAGTCCTAACGTTA+AGG 0.454957 5_3:-9601723 None:intergenic
TTGAAGTATGGTTCCAGAAT+CGG 0.456231 5_3:+9602201 Msa0797450:CDS
CGCGTCGCCGACGGTGGTGG+TGG 0.459139 5_3:+9603161 Msa0797450:CDS
ATGAAGGAGGTGGAGATGAA+TGG 0.459827 5_3:-9601549 None:intergenic
AATATGGTAAGGTTTATAAA+GGG 0.461988 5_3:-9601516 None:intergenic
TCTCTCAAGTATCAAAATAT+GGG 0.462893 5_3:+9601575 Msa0797450:exon
AGTTCCTCACCATAACCTTT+GGG 0.463230 5_3:-9601779 None:intergenic
CGCAAGAAGGGCAGATGGAG+AGG 0.463288 5_3:-9603127 None:intergenic
GGGTGGGTGGGTGAGTGGGT+GGG 0.473842 5_3:-9601440 None:intergenic
GGCCGCGTCGCCGACGGTGG+TGG 0.477523 5_3:+9603158 Msa0797450:CDS
GGTTCCAGAATCGGAGAGCC+AGG 0.479376 5_3:+9602210 Msa0797450:CDS
ATAAAGGGTTAGAAGAGAAA+GGG 0.488973 5_3:-9601501 None:intergenic
CAAATGCTAGAAAGAAACTA+AGG 0.489611 5_3:+9601951 Msa0797450:CDS
TAAGGATGGCTCGTTGGAGG+TGG 0.501094 5_3:-9601705 None:intergenic
GGAGGTGGAATAGGGATTCA+TGG 0.513429 5_3:-9601690 None:intergenic
GAAAATTAGATAATATGGTA+AGG 0.514550 5_3:-9601527 None:intergenic
GGTTAGAAGAGAAAGGGAGG+TGG 0.515349 5_3:-9601495 None:intergenic
CGTTAAGGATGGCTCGTTGG+AGG 0.516004 5_3:-9601708 None:intergenic
AGAAGAAGTAGAAGAAGAGA+GGG 0.516839 5_3:+9601892 Msa0797450:CDS
CGGCCGAGTCTTTCGCAAGA+AGG 0.519322 5_3:-9603140 None:intergenic
CACCACCACCGTCGGCGACG+CGG 0.531823 5_3:-9603160 None:intergenic
AACGAGCCATCCTTAACGTT+AGG 0.533980 5_3:+9601713 Msa0797450:CDS
GGCCGAGTCTTTCGCAAGAA+GGG 0.542654 5_3:-9603139 None:intergenic
GAGAGTGCTGCAAGTGAAGA+GGG 0.544213 5_3:+9601856 Msa0797450:CDS
GAGAGGGTAGCTGCAGGCAT+AGG 0.545391 5_3:-9603110 None:intergenic
CAGATGGAGAGGGTAGCTGC+AGG 0.545980 5_3:-9603116 None:intergenic
TTAATTCATCTTTCTCAAGT+GGG 0.546761 5_3:+9601834 Msa0797450:CDS
TTTGTTTAACATGCTGCGGA+AGG 0.548799 5_3:-9603248 None:intergenic
GATGAATTAACAACACTATG+AGG 0.550657 5_3:-9601821 None:intergenic
CTCGGCCGCGTCGCCGACGG+TGG 0.550736 5_3:+9603155 Msa0797450:CDS
GAATACTTCTACTACTCCAA+AGG 0.557339 5_3:+9601646 Msa0797450:CDS
TAGTTTAGCTAATACTGTAG+AGG 0.570422 5_3:+9603375 Msa0797450:three_prime_UTR
ACTTGAGAGAAGAATGAAGG+AGG 0.571975 5_3:-9601562 None:intergenic
GGAGAGTGCTGCAAGTGAAG+AGG 0.575107 5_3:+9601855 Msa0797450:CDS
GAGCTTGTTTGTGATTTGTA+CGG 0.578033 5_3:-9601757 None:intergenic
GGAATAGGGATTCATGGTGG+TGG 0.578972 5_3:-9601684 None:intergenic
GAAATGAGTATTTGGAGCCA+TGG 0.579663 5_3:-9603207 None:intergenic
AAGGGTTAGAAGAGAAAGGG+AGG 0.581372 5_3:-9601498 None:intergenic
GCAAGAAGGGCAGATGGAGA+GGG 0.582206 5_3:-9603126 None:intergenic
ATTAGAACCACCACCACCGT+CGG 0.589643 5_3:-9603168 None:intergenic
TCTTTCGCAAGAAGGGCAGA+TGG 0.591761 5_3:-9603132 None:intergenic
GCTGCGGAAGGATTGTTGAA+AGG 0.595707 5_3:-9603236 None:intergenic
TGCCCTTCTTGCGAAAGACT+CGG 0.599355 5_3:+9603137 Msa0797450:CDS
AGTATTTGGAGCCATGGTGA+AGG 0.599655 5_3:-9603201 None:intergenic
AACCATACTTCAACTTGTCG+CGG 0.615090 5_3:-9602191 None:intergenic
GAGAGTCCTAACGTTAAGGA+TGG 0.616116 5_3:-9601719 None:intergenic
GTCTTTAGATTCTTAGAACG+AGG 0.616180 5_3:-9603483 None:intergenic
TAACGTTAAGGATGGCTCGT+TGG 0.618624 5_3:-9601711 None:intergenic
CATTAACAGACGAAAATAGG+AGG 0.634319 5_3:+9603030 Msa0797450:CDS
TAAAATCACTGCCTTCACCA+TGG 0.649046 5_3:+9603190 Msa0797450:CDS
AAAGCTGAAACAAACAGAGG+TGG 0.651647 5_3:+9602977 Msa0797450:CDS
AGCTCCCAAAGGTTATGGTG+AGG 0.658770 5_3:+9601775 Msa0797450:CDS
AATCACAAACAAGCTCCCAA+AGG 0.673939 5_3:+9601764 Msa0797450:CDS
GGTGGAATAGGGATTCATGG+TGG 0.677474 5_3:-9601687 None:intergenic
TCAAAGATAAACCTAGAACA+AGG 0.685669 5_3:-9601625 None:intergenic
GCAGGCATAGGCATGTACAA+AGG 0.695698 5_3:-9603098 None:intergenic
AACAAAGCTGAAACAAACAG+AGG 0.748355 5_3:+9602974 Msa0797450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATTAATATTCTGT+TGG + chr5_3:9602116-9602135 Msa0797450:intron 10.0%
!! CTTAAAAAATCTTATATTTA+AGG + chr5_3:9602443-9602462 Msa0797450:intron 10.0%
!!! ATTTATTTTCTTATCTTATA+AGG + chr5_3:9602618-9602637 Msa0797450:intron 10.0%
!!! TTTATTTTCTTATCTTATAA+GGG + chr5_3:9602619-9602638 Msa0797450:intron 10.0%
!! CTAATAAAAAATAGTTAATT+TGG - chr5_3:9602761-9602780 None:intergenic 10.0%
!!! ATTATAGTTACTTTTAATTT+TGG + chr5_3:9603414-9603433 Msa0797450:three_prime_UTR 10.0%
!! TATAAACATATAAATACAAT+AGG - chr5_3:9603448-9603467 None:intergenic 10.0%
!! ATATTATATTAATATTCTGT+TGG + chr5_3:9602116-9602135 Msa0797450:intron 10.0%
!! CTTAAAAAATCTTATATTTA+AGG + chr5_3:9602443-9602462 Msa0797450:intron 10.0%
!!! ATTTATTTTCTTATCTTATA+AGG + chr5_3:9602618-9602637 Msa0797450:intron 10.0%
!!! TTTATTTTCTTATCTTATAA+GGG + chr5_3:9602619-9602638 Msa0797450:intron 10.0%
!! CTAATAAAAAATAGTTAATT+TGG - chr5_3:9602761-9602780 None:intergenic 10.0%
!!! ATTATAGTTACTTTTAATTT+TGG + chr5_3:9603414-9603433 Msa0797450:three_prime_UTR 10.0%
!! TATAAACATATAAATACAAT+AGG - chr5_3:9603448-9603467 None:intergenic 10.0%
!!! TGAGTTTTGTAAAAAAAAAA+AGG - chr5_3:9602526-9602545 None:intergenic 15.0%
!! AAAATTGCTCTTATAATTAT+TGG - chr5_3:9602698-9602717 None:intergenic 15.0%
!!! AAAAGTCTTATATTAAAGTA+AGG + chr5_3:9602813-9602832 Msa0797450:intron 15.0%
!!! TGAGTTTTGTAAAAAAAAAA+AGG - chr5_3:9602526-9602545 None:intergenic 15.0%
!! AAAATTGCTCTTATAATTAT+TGG - chr5_3:9602698-9602717 None:intergenic 15.0%
!!! AAAAGTCTTATATTAAAGTA+AGG + chr5_3:9602813-9602832 Msa0797450:intron 15.0%
!!! ATAAATACAAGACTTTTTGT+GGG - chr5_3:9601472-9601491 None:intergenic 20.0%
!!! AATAAATACAAGACTTTTTG+TGG - chr5_3:9601473-9601492 None:intergenic 20.0%
!! AATATGGTAAGGTTTATAAA+GGG - chr5_3:9601519-9601538 None:intergenic 20.0%
!! TAATATGGTAAGGTTTATAA+AGG - chr5_3:9601520-9601539 None:intergenic 20.0%
!! GAAAATTAGATAATATGGTA+AGG - chr5_3:9601530-9601549 None:intergenic 20.0%
!! GAATGGAAAATTAGATAATA+TGG - chr5_3:9601535-9601554 None:intergenic 20.0%
!!! TAATTTTCATGACTCTATAA+TGG - chr5_3:9602273-9602292 None:intergenic 20.0%
!!! GATATTTTATGAATATCATG+TGG + chr5_3:9602399-9602418 Msa0797450:intron 20.0%
!! CCTATATGTAAAATAAATAG+AGG - chr5_3:9602591-9602610 None:intergenic 20.0%
!!! CCTCTATTTATTTTACATAT+AGG + chr5_3:9602588-9602607 Msa0797450:intron 20.0%
!!! AATATAAGACTTTTTTTGAG+AGG - chr5_3:9602807-9602826 None:intergenic 20.0%
!!! ATAAATACAAGACTTTTTGT+GGG - chr5_3:9601472-9601491 None:intergenic 20.0%
!!! AATAAATACAAGACTTTTTG+TGG - chr5_3:9601473-9601492 None:intergenic 20.0%
!! AATATGGTAAGGTTTATAAA+GGG - chr5_3:9601519-9601538 None:intergenic 20.0%
!! TAATATGGTAAGGTTTATAA+AGG - chr5_3:9601520-9601539 None:intergenic 20.0%
!! GAAAATTAGATAATATGGTA+AGG - chr5_3:9601530-9601549 None:intergenic 20.0%
!! GAATGGAAAATTAGATAATA+TGG - chr5_3:9601535-9601554 None:intergenic 20.0%
!!! TAATTTTCATGACTCTATAA+TGG - chr5_3:9602273-9602292 None:intergenic 20.0%
!!! GATATTTTATGAATATCATG+TGG + chr5_3:9602399-9602418 Msa0797450:intron 20.0%
!! CCTATATGTAAAATAAATAG+AGG - chr5_3:9602591-9602610 None:intergenic 20.0%
!!! CCTCTATTTATTTTACATAT+AGG + chr5_3:9602588-9602607 Msa0797450:intron 20.0%
!!! AATATAAGACTTTTTTTGAG+AGG - chr5_3:9602807-9602826 None:intergenic 20.0%
!! TAAATACAAGACTTTTTGTG+GGG - chr5_3:9601471-9601490 None:intergenic 25.0%
! TTCTCTCAAGTATCAAAATA+TGG + chr5_3:9601574-9601593 Msa0797450:exon 25.0%
! TCTCTCAAGTATCAAAATAT+GGG + chr5_3:9601575-9601594 Msa0797450:exon 25.0%
! TTAATTCATCTTTCTCAAGT+GGG + chr5_3:9601834-9601853 Msa0797450:CDS 25.0%
! GAGATGAGAAAAATAATTAC+AGG - chr5_3:9602037-9602056 None:intergenic 25.0%
! TGAAAGAGAGAGAAAAAATT+AGG + chr5_3:9602648-9602667 Msa0797450:intron 25.0%
!! AGTCTTATATTAAAGTAAGG+AGG + chr5_3:9602816-9602835 Msa0797450:intron 25.0%
! GTCTTATATTAAAGTAAGGA+GGG + chr5_3:9602817-9602836 Msa0797450:intron 25.0%
! AAACATTAACAGACGAAAAT+AGG + chr5_3:9603027-9603046 Msa0797450:CDS 25.0%
!!! TTTTTTTGTTTAACATGCTG+CGG - chr5_3:9603255-9603274 None:intergenic 25.0%
! CAAAAAAATACAATGGTTGT+GGG - chr5_3:9603304-9603323 None:intergenic 25.0%
!!! CATTGTATTTTTTTGGTTGA+GGG + chr5_3:9603309-9603328 Msa0797450:three_prime_UTR 25.0%
!!! TTTTTTTTTTGAGACTTGAG+AGG + chr5_3:9603525-9603544 Msa0797450:three_prime_UTR 25.0%
!! TAAATACAAGACTTTTTGTG+GGG - chr5_3:9601471-9601490 None:intergenic 25.0%
! TTCTCTCAAGTATCAAAATA+TGG + chr5_3:9601574-9601593 Msa0797450:exon 25.0%
! TCTCTCAAGTATCAAAATAT+GGG + chr5_3:9601575-9601594 Msa0797450:exon 25.0%
! TTAATTCATCTTTCTCAAGT+GGG + chr5_3:9601834-9601853 Msa0797450:CDS 25.0%
! GAGATGAGAAAAATAATTAC+AGG - chr5_3:9602037-9602056 None:intergenic 25.0%
! TGAAAGAGAGAGAAAAAATT+AGG + chr5_3:9602648-9602667 Msa0797450:intron 25.0%
!! AGTCTTATATTAAAGTAAGG+AGG + chr5_3:9602816-9602835 Msa0797450:intron 25.0%
! GTCTTATATTAAAGTAAGGA+GGG + chr5_3:9602817-9602836 Msa0797450:intron 25.0%
! AAACATTAACAGACGAAAAT+AGG + chr5_3:9603027-9603046 Msa0797450:CDS 25.0%
!!! TTTTTTTGTTTAACATGCTG+CGG - chr5_3:9603255-9603274 None:intergenic 25.0%
! CAAAAAAATACAATGGTTGT+GGG - chr5_3:9603304-9603323 None:intergenic 25.0%
!!! CATTGTATTTTTTTGGTTGA+GGG + chr5_3:9603309-9603328 Msa0797450:three_prime_UTR 25.0%
!!! TTTTTTTTTTGAGACTTGAG+AGG + chr5_3:9603525-9603544 Msa0797450:three_prime_UTR 25.0%
! AAATACAAGACTTTTTGTGG+GGG - chr5_3:9601470-9601489 None:intergenic 30.0%
ATAAAGGGTTAGAAGAGAAA+GGG - chr5_3:9601504-9601523 None:intergenic 30.0%
TATAAAGGGTTAGAAGAGAA+AGG - chr5_3:9601505-9601524 None:intergenic 30.0%
TCAAAGATAAACCTAGAACA+AGG - chr5_3:9601628-9601647 None:intergenic 30.0%
GATGAATTAACAACACTATG+AGG - chr5_3:9601824-9601843 None:intergenic 30.0%
GTTAATTCATCTTTCTCAAG+TGG + chr5_3:9601833-9601852 Msa0797450:CDS 30.0%
CAAATGCTAGAAAGAAACTA+AGG + chr5_3:9601951-9601970 Msa0797450:CDS 30.0%
AAGCAATAGTGATTGTTCTT+TGG - chr5_3:9601981-9602000 None:intergenic 30.0%
! CTGTCTAGCTACTAAATTTT+TGG - chr5_3:9602348-9602367 None:intergenic 30.0%
CAGACTAAGCTAATAAATGT+TGG + chr5_3:9602900-9602919 Msa0797450:intron 30.0%
AATAAATGTTGGTGCATGTT+TGG + chr5_3:9602911-9602930 Msa0797450:intron 30.0%
GGATTGTAGAAATGAGTATT+TGG - chr5_3:9603218-9603237 None:intergenic 30.0%
CCAAAAAAATACAATGGTTG+TGG - chr5_3:9603305-9603324 None:intergenic 30.0%
!!! CCACAACCATTGTATTTTTT+TGG + chr5_3:9603302-9603321 Msa0797450:three_prime_UTR 30.0%
CCTCAACCAAAAAAATACAA+TGG - chr5_3:9603311-9603330 None:intergenic 30.0%
!!! CCATTGTATTTTTTTGGTTG+AGG + chr5_3:9603308-9603327 Msa0797450:three_prime_UTR 30.0%
! TATATACGTTTTGCTAAGCT+AGG + chr5_3:9603335-9603354 Msa0797450:three_prime_UTR 30.0%
! ATATACGTTTTGCTAAGCTA+GGG + chr5_3:9603336-9603355 Msa0797450:three_prime_UTR 30.0%
TAGTTTAGCTAATACTGTAG+AGG + chr5_3:9603375-9603394 Msa0797450:three_prime_UTR 30.0%
! AAATACAAGACTTTTTGTGG+GGG - chr5_3:9601470-9601489 None:intergenic 30.0%
ATAAAGGGTTAGAAGAGAAA+GGG - chr5_3:9601504-9601523 None:intergenic 30.0%
TATAAAGGGTTAGAAGAGAA+AGG - chr5_3:9601505-9601524 None:intergenic 30.0%
TCAAAGATAAACCTAGAACA+AGG - chr5_3:9601628-9601647 None:intergenic 30.0%
GATGAATTAACAACACTATG+AGG - chr5_3:9601824-9601843 None:intergenic 30.0%
GTTAATTCATCTTTCTCAAG+TGG + chr5_3:9601833-9601852 Msa0797450:CDS 30.0%
CAAATGCTAGAAAGAAACTA+AGG + chr5_3:9601951-9601970 Msa0797450:CDS 30.0%
AAGCAATAGTGATTGTTCTT+TGG - chr5_3:9601981-9602000 None:intergenic 30.0%
! CTGTCTAGCTACTAAATTTT+TGG - chr5_3:9602348-9602367 None:intergenic 30.0%
CAGACTAAGCTAATAAATGT+TGG + chr5_3:9602900-9602919 Msa0797450:intron 30.0%
AATAAATGTTGGTGCATGTT+TGG + chr5_3:9602911-9602930 Msa0797450:intron 30.0%
GGATTGTAGAAATGAGTATT+TGG - chr5_3:9603218-9603237 None:intergenic 30.0%
CCAAAAAAATACAATGGTTG+TGG - chr5_3:9603305-9603324 None:intergenic 30.0%
!!! CCACAACCATTGTATTTTTT+TGG + chr5_3:9603302-9603321 Msa0797450:three_prime_UTR 30.0%
CCTCAACCAAAAAAATACAA+TGG - chr5_3:9603311-9603330 None:intergenic 30.0%
!!! CCATTGTATTTTTTTGGTTG+AGG + chr5_3:9603308-9603327 Msa0797450:three_prime_UTR 30.0%
! TATATACGTTTTGCTAAGCT+AGG + chr5_3:9603335-9603354 Msa0797450:three_prime_UTR 30.0%
! ATATACGTTTTGCTAAGCTA+GGG + chr5_3:9603336-9603355 Msa0797450:three_prime_UTR 30.0%
TAGTTTAGCTAATACTGTAG+AGG + chr5_3:9603375-9603394 Msa0797450:three_prime_UTR 30.0%
GATACTTGAGAGAAGAATGA+AGG - chr5_3:9601568-9601587 None:intergenic 35.0%
GAATACTTCTACTACTCCAA+AGG + chr5_3:9601646-9601665 Msa0797450:CDS 35.0%
! GAGCTTGTTTGTGATTTGTA+CGG - chr5_3:9601760-9601779 None:intergenic 35.0%
AAGAAGAAGTAGAAGAAGAG+AGG + chr5_3:9601891-9601910 Msa0797450:CDS 35.0%
AGAAGAAGTAGAAGAAGAGA+GGG + chr5_3:9601892-9601911 Msa0797450:CDS 35.0%
TTGAAGTATGGTTCCAGAAT+CGG + chr5_3:9602201-9602220 Msa0797450:CDS 35.0%
AAAAAGTTTATGTCCGTACC+TGG - chr5_3:9602231-9602250 None:intergenic 35.0%
! GACTCTATAATGGTGATGTA+CGG - chr5_3:9602263-9602282 None:intergenic 35.0%
! AAAAAGCCTTCCTTTGCTTT+TGG + chr5_3:9602850-9602869 Msa0797450:intron 35.0%
ACAAATCCAAAAGCAAAGGA+AGG - chr5_3:9602859-9602878 None:intergenic 35.0%
!! TTCCTTTGCTTTTGGATTTG+TGG + chr5_3:9602858-9602877 Msa0797450:intron 35.0%
AACCACAAATCCAAAAGCAA+AGG - chr5_3:9602863-9602882 None:intergenic 35.0%
GGATTTGTGGTTGTTAAGTA+TGG + chr5_3:9602871-9602890 Msa0797450:intron 35.0%
AACAAAGCTGAAACAAACAG+AGG + chr5_3:9602974-9602993 Msa0797450:CDS 35.0%
CATTAACAGACGAAAATAGG+AGG + chr5_3:9603030-9603049 Msa0797450:CDS 35.0%
GTCTTTAGATTCTTAGAACG+AGG - chr5_3:9603486-9603505 None:intergenic 35.0%
GATACTTGAGAGAAGAATGA+AGG - chr5_3:9601568-9601587 None:intergenic 35.0%
GAATACTTCTACTACTCCAA+AGG + chr5_3:9601646-9601665 Msa0797450:CDS 35.0%
! GAGCTTGTTTGTGATTTGTA+CGG - chr5_3:9601760-9601779 None:intergenic 35.0%
AAGAAGAAGTAGAAGAAGAG+AGG + chr5_3:9601891-9601910 Msa0797450:CDS 35.0%
AGAAGAAGTAGAAGAAGAGA+GGG + chr5_3:9601892-9601911 Msa0797450:CDS 35.0%
TTGAAGTATGGTTCCAGAAT+CGG + chr5_3:9602201-9602220 Msa0797450:CDS 35.0%
AAAAAGTTTATGTCCGTACC+TGG - chr5_3:9602231-9602250 None:intergenic 35.0%
! GACTCTATAATGGTGATGTA+CGG - chr5_3:9602263-9602282 None:intergenic 35.0%
! AAAAAGCCTTCCTTTGCTTT+TGG + chr5_3:9602850-9602869 Msa0797450:intron 35.0%
ACAAATCCAAAAGCAAAGGA+AGG - chr5_3:9602859-9602878 None:intergenic 35.0%
!! TTCCTTTGCTTTTGGATTTG+TGG + chr5_3:9602858-9602877 Msa0797450:intron 35.0%
AACCACAAATCCAAAAGCAA+AGG - chr5_3:9602863-9602882 None:intergenic 35.0%
GGATTTGTGGTTGTTAAGTA+TGG + chr5_3:9602871-9602890 Msa0797450:intron 35.0%
AACAAAGCTGAAACAAACAG+AGG + chr5_3:9602974-9602993 Msa0797450:CDS 35.0%
CATTAACAGACGAAAATAGG+AGG + chr5_3:9603030-9603049 Msa0797450:CDS 35.0%
GTCTTTAGATTCTTAGAACG+AGG - chr5_3:9603486-9603505 None:intergenic 35.0%
ACTTGAGAGAAGAATGAAGG+AGG - chr5_3:9601565-9601584 None:intergenic 40.0%
GATTCTCTTCACCTTGTTCT+AGG + chr5_3:9601614-9601633 Msa0797450:CDS 40.0%
! GTGGTGGTAGTTATTTCCTT+TGG - chr5_3:9601665-9601684 None:intergenic 40.0%
AATCACAAACAAGCTCCCAA+AGG + chr5_3:9601764-9601783 Msa0797450:CDS 40.0%
AAACAAGCTCCCAAAGGTTA+TGG + chr5_3:9601770-9601789 Msa0797450:CDS 40.0%
AGTTCCTCACCATAACCTTT+GGG - chr5_3:9601782-9601801 None:intergenic 40.0%
AAGTTCCTCACCATAACCTT+TGG - chr5_3:9601783-9601802 None:intergenic 40.0%
TAGCGAGACAGTTGAATCTA+AGG + chr5_3:9602168-9602187 Msa0797450:CDS 40.0%
AACCATACTTCAACTTGTCG+CGG - chr5_3:9602194-9602213 None:intergenic 40.0%
AAAGCTGAAACAAACAGAGG+TGG + chr5_3:9602977-9602996 Msa0797450:CDS 40.0%
CGAAAATAGGAGGCTCAAAA+AGG + chr5_3:9603040-9603059 Msa0797450:CDS 40.0%
TAAAATCACTGCCTTCACCA+TGG + chr5_3:9603190-9603209 Msa0797450:CDS 40.0%
! GAAATGAGTATTTGGAGCCA+TGG - chr5_3:9603210-9603229 None:intergenic 40.0%
TTTGTTTAACATGCTGCGGA+AGG - chr5_3:9603251-9603270 None:intergenic 40.0%
ACTTGAGAGAAGAATGAAGG+AGG - chr5_3:9601565-9601584 None:intergenic 40.0%
GATTCTCTTCACCTTGTTCT+AGG + chr5_3:9601614-9601633 Msa0797450:CDS 40.0%
! GTGGTGGTAGTTATTTCCTT+TGG - chr5_3:9601665-9601684 None:intergenic 40.0%
AATCACAAACAAGCTCCCAA+AGG + chr5_3:9601764-9601783 Msa0797450:CDS 40.0%
AAACAAGCTCCCAAAGGTTA+TGG + chr5_3:9601770-9601789 Msa0797450:CDS 40.0%
AGTTCCTCACCATAACCTTT+GGG - chr5_3:9601782-9601801 None:intergenic 40.0%
AAGTTCCTCACCATAACCTT+TGG - chr5_3:9601783-9601802 None:intergenic 40.0%
TAGCGAGACAGTTGAATCTA+AGG + chr5_3:9602168-9602187 Msa0797450:CDS 40.0%
AACCATACTTCAACTTGTCG+CGG - chr5_3:9602194-9602213 None:intergenic 40.0%
AAAGCTGAAACAAACAGAGG+TGG + chr5_3:9602977-9602996 Msa0797450:CDS 40.0%
CGAAAATAGGAGGCTCAAAA+AGG + chr5_3:9603040-9603059 Msa0797450:CDS 40.0%
TAAAATCACTGCCTTCACCA+TGG + chr5_3:9603190-9603209 Msa0797450:CDS 40.0%
! GAAATGAGTATTTGGAGCCA+TGG - chr5_3:9603210-9603229 None:intergenic 40.0%
TTTGTTTAACATGCTGCGGA+AGG - chr5_3:9603251-9603270 None:intergenic 40.0%
AAGGGTTAGAAGAGAAAGGG+AGG - chr5_3:9601501-9601520 None:intergenic 45.0%
ATGAAGGAGGTGGAGATGAA+TGG - chr5_3:9601552-9601571 None:intergenic 45.0%
TGAGAGAAGAATGAAGGAGG+TGG - chr5_3:9601562-9601581 None:intergenic 45.0%
TAACGTTAAGGATGGCTCGT+TGG - chr5_3:9601714-9601733 None:intergenic 45.0%
AACGAGCCATCCTTAACGTT+AGG + chr5_3:9601713-9601732 Msa0797450:CDS 45.0%
GAGAGTCCTAACGTTAAGGA+TGG - chr5_3:9601722-9601741 None:intergenic 45.0%
TCCTTAACGTTAGGACTCTC+TGG + chr5_3:9601722-9601741 Msa0797450:CDS 45.0%
ACCAGAGAGTCCTAACGTTA+AGG - chr5_3:9601726-9601745 None:intergenic 45.0%
! AGTATTTGGAGCCATGGTGA+AGG - chr5_3:9603204-9603223 None:intergenic 45.0%
AAGGGTTAGAAGAGAAAGGG+AGG - chr5_3:9601501-9601520 None:intergenic 45.0%
ATGAAGGAGGTGGAGATGAA+TGG - chr5_3:9601552-9601571 None:intergenic 45.0%
TGAGAGAAGAATGAAGGAGG+TGG - chr5_3:9601562-9601581 None:intergenic 45.0%
TAACGTTAAGGATGGCTCGT+TGG - chr5_3:9601714-9601733 None:intergenic 45.0%
AACGAGCCATCCTTAACGTT+AGG + chr5_3:9601713-9601732 Msa0797450:CDS 45.0%
GAGAGTCCTAACGTTAAGGA+TGG - chr5_3:9601722-9601741 None:intergenic 45.0%
TCCTTAACGTTAGGACTCTC+TGG + chr5_3:9601722-9601741 Msa0797450:CDS 45.0%
ACCAGAGAGTCCTAACGTTA+AGG - chr5_3:9601726-9601745 None:intergenic 45.0%
! AGTATTTGGAGCCATGGTGA+AGG - chr5_3:9603204-9603223 None:intergenic 45.0%
!!! AACTTATATTAAATAAATTT+TGG + chr5_3:9602937-9602956 Msa0797450:intron 5.0%
!!! AACTTATATTAAATAAATTT+TGG + chr5_3:9602937-9602956 Msa0797450:intron 5.0%
!!! AGACTTTTTGTGGGGGCGTT+GGG - chr5_3:9601463-9601482 None:intergenic 50.0%
!! AAGACTTTTTGTGGGGGCGT+TGG - chr5_3:9601464-9601483 None:intergenic 50.0%
GGTTAGAAGAGAAAGGGAGG+TGG - chr5_3:9601498-9601517 None:intergenic 50.0%
!! ATAGGGATTCATGGTGGTGG+TGG - chr5_3:9601684-9601703 None:intergenic 50.0%
GGAATAGGGATTCATGGTGG+TGG - chr5_3:9601687-9601706 None:intergenic 50.0%
GGTGGAATAGGGATTCATGG+TGG - chr5_3:9601690-9601709 None:intergenic 50.0%
GGAGGTGGAATAGGGATTCA+TGG - chr5_3:9601693-9601712 None:intergenic 50.0%
AGCTCCCAAAGGTTATGGTG+AGG + chr5_3:9601775-9601794 Msa0797450:CDS 50.0%
!! GAGAGTGCTGCAAGTGAAGA+GGG + chr5_3:9601856-9601875 Msa0797450:CDS 50.0%
GCAGGCATAGGCATGTACAA+AGG - chr5_3:9603101-9603120 None:intergenic 50.0%
TCTTTCGCAAGAAGGGCAGA+TGG - chr5_3:9603135-9603154 None:intergenic 50.0%
TGCCCTTCTTGCGAAAGACT+CGG + chr5_3:9603137-9603156 Msa0797450:CDS 50.0%
ATTAGAACCACCACCACCGT+CGG - chr5_3:9603171-9603190 None:intergenic 50.0%
GCTGCGGAAGGATTGTTGAA+AGG - chr5_3:9603239-9603258 None:intergenic 50.0%
!!! AGACTTTTTGTGGGGGCGTT+GGG - chr5_3:9601463-9601482 None:intergenic 50.0%
!! AAGACTTTTTGTGGGGGCGT+TGG - chr5_3:9601464-9601483 None:intergenic 50.0%
GGTTAGAAGAGAAAGGGAGG+TGG - chr5_3:9601498-9601517 None:intergenic 50.0%
!! ATAGGGATTCATGGTGGTGG+TGG - chr5_3:9601684-9601703 None:intergenic 50.0%
GGAATAGGGATTCATGGTGG+TGG - chr5_3:9601687-9601706 None:intergenic 50.0%
GGTGGAATAGGGATTCATGG+TGG - chr5_3:9601690-9601709 None:intergenic 50.0%
GGAGGTGGAATAGGGATTCA+TGG - chr5_3:9601693-9601712 None:intergenic 50.0%
AGCTCCCAAAGGTTATGGTG+AGG + chr5_3:9601775-9601794 Msa0797450:CDS 50.0%
!! GAGAGTGCTGCAAGTGAAGA+GGG + chr5_3:9601856-9601875 Msa0797450:CDS 50.0%
GCAGGCATAGGCATGTACAA+AGG - chr5_3:9603101-9603120 None:intergenic 50.0%
TCTTTCGCAAGAAGGGCAGA+TGG - chr5_3:9603135-9603154 None:intergenic 50.0%
TGCCCTTCTTGCGAAAGACT+CGG + chr5_3:9603137-9603156 Msa0797450:CDS 50.0%
ATTAGAACCACCACCACCGT+CGG - chr5_3:9603171-9603190 None:intergenic 50.0%
GCTGCGGAAGGATTGTTGAA+AGG - chr5_3:9603239-9603258 None:intergenic 50.0%
!!! TTTTTGTGGGGGCGTTGGGT+GGG - chr5_3:9601459-9601478 None:intergenic 55.0%
GGCTCGTTGGAGGTGGAATA+GGG - chr5_3:9601701-9601720 None:intergenic 55.0%
TGGCTCGTTGGAGGTGGAAT+AGG - chr5_3:9601702-9601721 None:intergenic 55.0%
TAAGGATGGCTCGTTGGAGG+TGG - chr5_3:9601708-9601727 None:intergenic 55.0%
CGTTAAGGATGGCTCGTTGG+AGG - chr5_3:9601711-9601730 None:intergenic 55.0%
!! GGAGAGTGCTGCAAGTGAAG+AGG + chr5_3:9601855-9601874 Msa0797450:CDS 55.0%
! GGCCGCGACAAGTTGAAGTA+TGG + chr5_3:9602189-9602208 Msa0797450:CDS 55.0%
CAGAATCGGAGAGCCAGGTA+CGG + chr5_3:9602215-9602234 Msa0797450:intron 55.0%
GCAAGAAGGGCAGATGGAGA+GGG - chr5_3:9603129-9603148 None:intergenic 55.0%
GGCCGAGTCTTTCGCAAGAA+GGG - chr5_3:9603142-9603161 None:intergenic 55.0%
!!! TTTTTGTGGGGGCGTTGGGT+GGG - chr5_3:9601459-9601478 None:intergenic 55.0%
GGCTCGTTGGAGGTGGAATA+GGG - chr5_3:9601701-9601720 None:intergenic 55.0%
TGGCTCGTTGGAGGTGGAAT+AGG - chr5_3:9601702-9601721 None:intergenic 55.0%
TAAGGATGGCTCGTTGGAGG+TGG - chr5_3:9601708-9601727 None:intergenic 55.0%
CGTTAAGGATGGCTCGTTGG+AGG - chr5_3:9601711-9601730 None:intergenic 55.0%
!! GGAGAGTGCTGCAAGTGAAG+AGG + chr5_3:9601855-9601874 Msa0797450:CDS 55.0%
! GGCCGCGACAAGTTGAAGTA+TGG + chr5_3:9602189-9602208 Msa0797450:CDS 55.0%
CAGAATCGGAGAGCCAGGTA+CGG + chr5_3:9602215-9602234 Msa0797450:intron 55.0%
GCAAGAAGGGCAGATGGAGA+GGG - chr5_3:9603129-9603148 None:intergenic 55.0%
GGCCGAGTCTTTCGCAAGAA+GGG - chr5_3:9603142-9603161 None:intergenic 55.0%
!!! CTTTTTGTGGGGGCGTTGGG+TGG - chr5_3:9601460-9601479 None:intergenic 60.0%
!! GGGATTCATGGTGGTGGTGG+TGG - chr5_3:9601681-9601700 None:intergenic 60.0%
GGTTCCAGAATCGGAGAGCC+AGG + chr5_3:9602210-9602229 Msa0797450:CDS 60.0%
! CGTACCTGGCTCTCCGATTC+TGG - chr5_3:9602217-9602236 None:intergenic 60.0%
GAGAGGGTAGCTGCAGGCAT+AGG - chr5_3:9603113-9603132 None:intergenic 60.0%
CAGATGGAGAGGGTAGCTGC+AGG - chr5_3:9603119-9603138 None:intergenic 60.0%
CGCAAGAAGGGCAGATGGAG+AGG - chr5_3:9603130-9603149 None:intergenic 60.0%
CGGCCGAGTCTTTCGCAAGA+AGG - chr5_3:9603143-9603162 None:intergenic 60.0%
!!! CTTTTTGTGGGGGCGTTGGG+TGG - chr5_3:9601460-9601479 None:intergenic 60.0%
!! GGGATTCATGGTGGTGGTGG+TGG - chr5_3:9601681-9601700 None:intergenic 60.0%
GGTTCCAGAATCGGAGAGCC+AGG + chr5_3:9602210-9602229 Msa0797450:CDS 60.0%
! CGTACCTGGCTCTCCGATTC+TGG - chr5_3:9602217-9602236 None:intergenic 60.0%
GAGAGGGTAGCTGCAGGCAT+AGG - chr5_3:9603113-9603132 None:intergenic 60.0%
CAGATGGAGAGGGTAGCTGC+AGG - chr5_3:9603119-9603138 None:intergenic 60.0%
CGCAAGAAGGGCAGATGGAG+AGG - chr5_3:9603130-9603149 None:intergenic 60.0%
CGGCCGAGTCTTTCGCAAGA+AGG - chr5_3:9603143-9603162 None:intergenic 60.0%
CGTTGGGTGGGTGGGTGAGT+GGG - chr5_3:9601447-9601466 None:intergenic 65.0%
CGTTGGGTGGGTGGGTGAGT+GGG - chr5_3:9601447-9601466 None:intergenic 65.0%
GGGTGGGTGGGTGAGTGGGT+GGG - chr5_3:9601443-9601462 None:intergenic 70.0%
TGGGTGGGTGGGTGAGTGGG+TGG - chr5_3:9601444-9601463 None:intergenic 70.0%
GCGTTGGGTGGGTGGGTGAG+TGG - chr5_3:9601448-9601467 None:intergenic 70.0%
!! TGTGGGGGCGTTGGGTGGGT+GGG - chr5_3:9601455-9601474 None:intergenic 70.0%
!! TTGTGGGGGCGTTGGGTGGG+TGG - chr5_3:9601456-9601475 None:intergenic 70.0%
GGGTGGGTGGGTGAGTGGGT+GGG - chr5_3:9601443-9601462 None:intergenic 70.0%
TGGGTGGGTGGGTGAGTGGG+TGG - chr5_3:9601444-9601463 None:intergenic 70.0%
GCGTTGGGTGGGTGGGTGAG+TGG - chr5_3:9601448-9601467 None:intergenic 70.0%
!! TGTGGGGGCGTTGGGTGGGT+GGG - chr5_3:9601455-9601474 None:intergenic 70.0%
!! TTGTGGGGGCGTTGGGTGGG+TGG - chr5_3:9601456-9601475 None:intergenic 70.0%
AGACTCGGCCGCGTCGCCGA+CGG + chr5_3:9603152-9603171 Msa0797450:CDS 75.0%
CACCACCACCGTCGGCGACG+CGG - chr5_3:9603163-9603182 None:intergenic 75.0%
AGACTCGGCCGCGTCGCCGA+CGG + chr5_3:9603152-9603171 Msa0797450:CDS 75.0%
CACCACCACCGTCGGCGACG+CGG - chr5_3:9603163-9603182 None:intergenic 75.0%
!! CGCGTCGCCGACGGTGGTGG+TGG + chr5_3:9603161-9603180 Msa0797450:CDS 80.0%
!! CGCGTCGCCGACGGTGGTGG+TGG + chr5_3:9603161-9603180 Msa0797450:CDS 80.0%
! CTCGGCCGCGTCGCCGACGG+TGG + chr5_3:9603155-9603174 Msa0797450:CDS 85.0%
! GGCCGCGTCGCCGACGGTGG+TGG + chr5_3:9603158-9603177 Msa0797450:CDS 85.0%
! CTCGGCCGCGTCGCCGACGG+TGG + chr5_3:9603155-9603174 Msa0797450:CDS 85.0%
! GGCCGCGTCGCCGACGGTGG+TGG + chr5_3:9603158-9603177 Msa0797450:CDS 85.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 9601440 9603633 9601440 ID=Msa0797450;Name=Msa0797450
chr5_3 mRNA 9601440 9603633 9601440 ID=Msa0797450-mRNA-1;Parent=Msa0797450;Name=Msa0797450-mRNA-1;_AED=0.03;_eAED=0.03;_QI=153|1|1|1|1|1|3|368|271
chr5_3 exon 9601440 9602036 9601440 ID=Msa0797450-mRNA-1:exon:4136;Parent=Msa0797450-mRNA-1
chr5_3 exon 9602152 9602231 9602152 ID=Msa0797450-mRNA-1:exon:4137;Parent=Msa0797450-mRNA-1
chr5_3 exon 9602974 9603633 9602974 ID=Msa0797450-mRNA-1:exon:4138;Parent=Msa0797450-mRNA-1
chr5_3 five_prime_UTR 9601440 9601592 9601440 ID=Msa0797450-mRNA-1:five_prime_utr;Parent=Msa0797450-mRNA-1
chr5_3 CDS 9601593 9602036 9601593 ID=Msa0797450-mRNA-1:cds;Parent=Msa0797450-mRNA-1
chr5_3 CDS 9602152 9602231 9602152 ID=Msa0797450-mRNA-1:cds;Parent=Msa0797450-mRNA-1
chr5_3 CDS 9602974 9603265 9602974 ID=Msa0797450-mRNA-1:cds;Parent=Msa0797450-mRNA-1
chr5_3 three_prime_UTR 9603266 9603633 9603266 ID=Msa0797450-mRNA-1:three_prime_utr;Parent=Msa0797450-mRNA-1
Gene Sequence

>Msa0797450

ATGGGTCTTAATAATGATCAAGATTCTCTTCACCTTGTTCTAGGTTTATCTTTGAATACTTCTACTACTCCAAAGGAAATAACTACCACCACCACCACCATGAATCCCTATTCCACCTCCAACGAGCCATCCTTAACGTTAGGACTCTCTGGTGAGAGTTATAACCGTACAAATCACAAACAAGCTCCCAAAGGTTATGGTGAGGAACTTTGTAGACAAACTTCATCACCTCATAGTGTTGTTAATTCATCTTTCTCAAGTGGGAGAGTGCTGCAAGTGAAGAGGGAGAGAGATGAAGAAGAAGAAGTAGAAGAAGAGAGGGTTTCTTCAAGAGTTAGTGATGAAGATGAAGATGCTACAAATGCTAGAAAGAAACTAAGGCTTACCAAAGAACAATCACTATTGCTTGAAGAAAGCTTCAAACTACATAGCACTCTCAATCCTAAACAAAAACAAGCTTTAGCGAGACAGTTGAATCTAAGGCCGCGACAAGTTGAAGTATGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAACAAACAGAGGTGGATTGCGAGTTCTTGAAGAAATGTTGTGAAACATTAACAGACGAAAATAGGAGGCTCAAAAAGGAGTTGCAAGAGTTGAAATCATTGAAAGTAGCACAACCTTTGTACATGCCTATGCCTGCAGCTACCCTCTCCATCTGCCCTTCTTGCGAAAGACTCGGCCGCGTCGCCGACGGTGGTGGTGGTTCTAATAAAATCACTGCCTTCACCATGGCTCCAAATACTCATTTCTACAATCCTTTCAACAATCCTTCCGCAGCATGTTAA
Protein sequence

>Msa0797450

MGLNNDQDSLHLVLGLSLNTSTTPKEITTTTTTMNPYSTSNEPSLTLGLSGESYNRTNHKQAPKGYGEELCRQTSSPHSVVNSSFSSGRVLQVKRERDEEEEVEEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKSLKVAQPLYMPMPAATLSICPSCERLGRVADGGGGSNKITAFTMAPNTHFYNPFNNPSAAC*