Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982780 | XP_003601315.3 | 96.338 | 628 | 23 | 0 | 1 | 628 | 1 | 628 | 0.0 | 1268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982780 | sp|Q9XF23|EDS1L_ARATH | 41.997 | 631 | 305 | 16 | 21 | 618 | 8 | 610 | 1.65e-152 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982780 | A0A396ITH9 | 96.338 | 628 | 23 | 0 | 1 | 628 | 1 | 628 | 0.0 | 1268 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0982780 | 0.814819 | 1.268468e-51 | -8.615850e-47 |
| Msa0013280 | Msa0982780 | 0.838846 | 2.256267e-57 | -8.615850e-47 |
| Msa0092410 | Msa0982780 | 0.812422 | 4.274806e-51 | -8.615850e-47 |
| Msa0106530 | Msa0982780 | 0.821206 | 4.566258e-53 | -8.615850e-47 |
| Msa0119440 | Msa0982780 | 0.808248 | 3.400442e-50 | -8.615850e-47 |
| Msa0614920 | Msa0982780 | 0.803957 | 2.720283e-49 | -8.615850e-47 |
| Msa0638990 | Msa0982780 | 0.841432 | 4.769494e-58 | -8.615850e-47 |
| Msa0661720 | Msa0982780 | 0.817168 | 3.793391e-52 | -8.615850e-47 |
| Msa0662580 | Msa0982780 | 0.807337 | 5.310505e-50 | -8.615850e-47 |
| Msa0678180 | Msa0982780 | 0.806137 | 9.518849e-50 | -8.615850e-47 |
| Msa0697570 | Msa0982780 | 0.812896 | 3.365392e-51 | -8.615850e-47 |
| Msa0708290 | Msa0982780 | 0.841443 | 4.737504e-58 | -8.615850e-47 |
| Msa0708300 | Msa0982780 | 0.825427 | 4.714694e-54 | -8.615850e-47 |
| Msa0708310 | Msa0982780 | 0.843912 | 1.046567e-58 | -8.615850e-47 |
| Msa0750810 | Msa0982780 | 0.833670 | 4.667730e-56 | -8.615850e-47 |
| Msa0786980 | Msa0982780 | 0.808517 | 2.978847e-50 | -8.615850e-47 |
| Msa0800430 | Msa0982780 | 0.813882 | 2.043308e-51 | -8.615850e-47 |
| Msa0812950 | Msa0982780 | 0.804559 | 2.038324e-49 | -8.615850e-47 |
| Msa0162690 | Msa0982780 | 0.825089 | 5.668230e-54 | -8.615850e-47 |
| Msa0186320 | Msa0982780 | 0.821555 | 3.793686e-53 | -8.615850e-47 |
| Msa0187830 | Msa0982780 | 0.822272 | 2.589017e-53 | -8.615850e-47 |
| Msa0189610 | Msa0982780 | 0.829807 | 4.186314e-55 | -8.615850e-47 |
| Msa0201530 | Msa0982780 | 0.800093 | 1.694109e-48 | -8.615850e-47 |
| Msa0201570 | Msa0982780 | 0.800951 | 1.132784e-48 | -8.615850e-47 |
| Msa0222870 | Msa0982780 | 0.802092 | 6.610124e-49 | -8.615850e-47 |
| Msa0364790 | Msa0982780 | 0.829660 | 4.545871e-55 | -8.615850e-47 |
| Msa0377840 | Msa0982780 | 0.804618 | 1.981312e-49 | -8.615850e-47 |
| Msa0386010 | Msa0982780 | 0.820201 | 7.771466e-53 | -8.615850e-47 |
| Msa0408340 | Msa0982780 | 0.811531 | 6.681303e-51 | -8.615850e-47 |
| Msa0412260 | Msa0982780 | 0.806303 | 8.781525e-50 | -8.615850e-47 |
| Msa0419670 | Msa0982780 | 0.819587 | 1.074211e-52 | -8.615850e-47 |
| Msa0426560 | Msa0982780 | 0.814304 | 1.649653e-51 | -8.615850e-47 |
| Msa0456770 | Msa0982780 | 0.817312 | 3.520948e-52 | -8.615850e-47 |
| Msa0466010 | Msa0982780 | 0.945186 | 4.888180e-104 | -8.615850e-47 |
| Msa0476330 | Msa0982780 | 0.801472 | 8.859675e-49 | -8.615850e-47 |
| Msa0982780 | Msa0992680 | 0.801715 | 7.899928e-49 | -8.615850e-47 |
| Msa0982780 | Msa1009110 | 0.828082 | 1.095538e-54 | -8.615850e-47 |
| Msa0982780 | Msa1017160 | 0.811912 | 5.521860e-51 | -8.615850e-47 |
| Msa0982780 | Msa1043120 | 0.816121 | 6.511672e-52 | -8.615850e-47 |
| Msa0982780 | Msa1173490 | 0.812041 | 5.176016e-51 | -8.615850e-47 |
| Msa0982780 | Msa1214170 | 0.826470 | 2.666281e-54 | -8.615850e-47 |
| Msa0982780 | Msa1238690 | 0.821191 | 4.602692e-53 | -8.615850e-47 |
| Msa0982780 | Msa1246700 | 0.809943 | 1.474017e-50 | -8.615850e-47 |
| Msa0982780 | Msa1329870 | 0.800024 | 1.749778e-48 | -8.615850e-47 |
| Msa0982780 | Msa1353870 | 0.812097 | 5.030877e-51 | -8.615850e-47 |
| Msa0982780 | Msa1353880 | 0.803924 | 2.763313e-49 | -8.615850e-47 |
| Msa0982780 | Msa1353890 | 0.844042 | 9.657023e-59 | -8.615850e-47 |
| Msa0982780 | Msa1360020 | 0.829986 | 3.786627e-55 | -8.615850e-47 |
| Msa0982780 | Msa1365610 | 0.801416 | 9.096224e-49 | -8.615850e-47 |
| Msa0982780 | Msa1367530 | 0.811203 | 7.871809e-51 | -8.615850e-47 |
| Msa0982780 | Msa1372660 | 0.809820 | 1.566034e-50 | -8.615850e-47 |
| Msa0982780 | Msa1376450 | 0.819508 | 1.119548e-52 | -8.615850e-47 |
| Msa0982780 | Msa1408050 | 0.800600 | 1.335541e-48 | -8.615850e-47 |
| Msa0982780 | Msa1408180 | 0.868171 | 7.958196e-66 | -8.615850e-47 |
| Msa0982780 | Msa1424630 | 0.839836 | 1.248412e-57 | -8.615850e-47 |
| Msa0982780 | Msa1430550 | 0.832895 | 7.279455e-56 | -8.615850e-47 |
| Msa0982780 | Msa1446900 | 0.816713 | 4.798884e-52 | -8.615850e-47 |
| Msa0982780 | Msa1448980 | 0.866064 | 3.746307e-65 | -8.615850e-47 |
| Msa0982780 | Msa1458510 | 0.819002 | 1.459544e-52 | -8.615850e-47 |
| Msa0240270 | Msa0982780 | 0.824849 | 6.459107e-54 | -8.615850e-47 |
| Msa0244140 | Msa0982780 | 0.801311 | 9.558735e-49 | -8.615850e-47 |
| Msa0244190 | Msa0982780 | 0.816339 | 5.820540e-52 | -8.615850e-47 |
| Msa0269560 | Msa0982780 | 0.813752 | 2.183690e-51 | -8.615850e-47 |
| Msa0271550 | Msa0982780 | 0.856433 | 3.227509e-62 | -8.615850e-47 |
| Msa0277410 | Msa0982780 | 0.827822 | 1.265074e-54 | -8.615850e-47 |
| Msa0281930 | Msa0982780 | 0.810109 | 1.357306e-50 | -8.615850e-47 |
| Msa0314000 | Msa0982780 | 0.815627 | 8.391202e-52 | -8.615850e-47 |
| Msa0319290 | Msa0982780 | 0.842526 | 2.450038e-58 | -8.615850e-47 |
| Msa0490380 | Msa0982780 | 0.832623 | 8.504466e-56 | -8.615850e-47 |
| Msa0501410 | Msa0982780 | 0.802580 | 5.245674e-49 | -8.615850e-47 |
| Msa0502780 | Msa0982780 | 0.802486 | 5.482572e-49 | -8.615850e-47 |
| Msa0517610 | Msa0982780 | 0.811889 | 5.586081e-51 | -8.615850e-47 |
| Msa0524330 | Msa0982780 | 0.806030 | 1.002679e-49 | -8.615850e-47 |
| Msa0524440 | Msa0982780 | 0.828171 | 1.042671e-54 | -8.615850e-47 |
| Msa0534880 | Msa0982780 | 0.822098 | 2.841006e-53 | -8.615850e-47 |
| Msa0574570 | Msa0982780 | 0.879401 | 1.284039e-69 | -8.615850e-47 |
| Msa0574580 | Msa0982780 | 0.811225 | 7.788451e-51 | -8.615850e-47 |
| Msa0574600 | Msa0982780 | 0.830165 | 3.424424e-55 | -8.615850e-47 |
| Msa0580920 | Msa0982780 | 0.862663 | 4.322283e-64 | -8.615850e-47 |
| Msa0870060 | Msa0982780 | 0.853760 | 1.930973e-61 | -8.615850e-47 |
| Msa0898320 | Msa0982780 | 0.827493 | 1.517874e-54 | -8.615850e-47 |
| Msa0935770 | Msa0982780 | 0.813660 | 2.287877e-51 | -8.615850e-47 |
| Msa0936530 | Msa0982780 | 0.825144 | 5.500939e-54 | -8.615850e-47 |
| Msa0936550 | Msa0982780 | 0.834227 | 3.386154e-56 | -8.615850e-47 |
| Msa0964490 | Msa0982780 | 0.809003 | 2.345337e-50 | -8.615850e-47 |
| Msa0972770 | Msa0982780 | 0.871237 | 7.962152e-67 | -8.615850e-47 |
| Msa0972810 | Msa0982780 | 0.814396 | 1.573937e-51 | -8.615850e-47 |
| Msa0973520 | Msa0982780 | 0.826086 | 3.290147e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982780 | MtrunA17_Chr3g0118541 | 96.338 | 628 | 23 | 0 | 1 | 628 | 1 | 628 | 0.0 | 1268 |
| Msa0982780 | MtrunA17_Chr3g0118251 | 52.117 | 614 | 277 | 10 | 22 | 626 | 13 | 618 | 0.0 | 605 |
| Msa0982780 | MtrunA17_Chr8g0384621 | 30.000 | 510 | 286 | 23 | 129 | 603 | 127 | 600 | 4.55e-50 | 184 |
| Msa0982780 | MtrunA17_Chr3g0107671 | 26.216 | 370 | 216 | 15 | 287 | 623 | 209 | 554 | 1.65e-21 | 99.0 |
| Msa0982780 | MtrunA17_Chr3g0118571 | 82.979 | 47 | 8 | 0 | 11 | 57 | 1 | 47 | 3.22e-21 | 87.4 |
| Msa0982780 | MtrunA17_Chr6g0451531 | 26.796 | 362 | 197 | 15 | 286 | 608 | 210 | 542 | 6.06e-21 | 97.1 |
| Msa0982780 | MtrunA17_Chr6g0451541 | 25.683 | 366 | 195 | 16 | 286 | 607 | 210 | 542 | 1.15e-17 | 86.7 |
| Msa0982780 | MtrunA17_Chr6g0451511 | 23.161 | 367 | 201 | 15 | 287 | 607 | 209 | 540 | 4.38e-14 | 75.5 |
| Msa0982780 | MtrunA17_Chr6g0451561 | 22.191 | 356 | 213 | 12 | 289 | 608 | 213 | 540 | 2.42e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982780 | AT3G48090.1 | 41.680 | 631 | 307 | 16 | 21 | 618 | 8 | 610 | 9.16e-152 | 452 |
| Msa0982780 | AT3G48080.1 | 41.111 | 630 | 310 | 17 | 21 | 615 | 8 | 611 | 1.52e-145 | 436 |
| Msa0982780 | AT3G48090.2 | 44.722 | 521 | 239 | 12 | 127 | 618 | 2 | 502 | 3.99e-138 | 413 |
| Msa0982780 | AT3G52430.1 | 27.221 | 349 | 216 | 12 | 289 | 615 | 188 | 520 | 2.21e-29 | 123 |
| Msa0982780 | AT3G52430.1 | 40.260 | 77 | 40 | 2 | 134 | 210 | 112 | 182 | 6.29e-11 | 65.9 |
| Msa0982780 | AT5G14930.2 | 23.250 | 400 | 225 | 16 | 238 | 608 | 162 | 508 | 7.30e-14 | 75.1 |
Find 163 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACCCATGTTTCTATATT+TGG | 0.127020 | 6_4:+22491521 | None:intergenic |
| TGGCCATTCTAGCAACATTT+TGG | 0.165541 | 6_4:-22490194 | Msa0982780:CDS |
| GCACTCTTCAGGGGCTGTTT+TGG | 0.210683 | 6_4:-22490214 | Msa0982780:CDS |
| CTTCAAATGACGGTGATAAT+TGG | 0.226494 | 6_4:+22488682 | None:intergenic |
| CAAGTCACACTGTCTCTTAT+TGG | 0.237776 | 6_4:+22489907 | None:intergenic |
| GGCTGGTGCTTGCAGGAGTA+TGG | 0.255063 | 6_4:-22488820 | Msa0982780:CDS |
| GGATTTGCTCTGGCTTTAAA+TGG | 0.261348 | 6_4:-22488182 | Msa0982780:three_prime_UTR |
| CTTGTGCTGAATTTGGATTT+TGG | 0.262348 | 6_4:+22490146 | None:intergenic |
| GATTCTGTGATTTCTGCTTT+TGG | 0.262651 | 6_4:+22488572 | None:intergenic |
| CCATGTTGCTTGTAATCTAA+TGG | 0.268851 | 6_4:-22489839 | Msa0982780:CDS |
| GTATTTACAGGGCACTCTTC+AGG | 0.268900 | 6_4:-22490225 | Msa0982780:CDS |
| TTAAACACTTCTGTAATATA+AGG | 0.282534 | 6_4:+22491408 | None:intergenic |
| TACTTGCTTCCCTTCTGTTA+TGG | 0.293574 | 6_4:+22490248 | None:intergenic |
| TATCTTGTTATAAGCTTTCC+TGG | 0.297959 | 6_4:-22491363 | Msa0982780:CDS |
| TCACCCATGTGTGTCACTTT+TGG | 0.298374 | 6_4:-22490123 | Msa0982780:CDS |
| TTGTGTTTGTTTCATTTCAT+TGG | 0.316346 | 6_4:+22491545 | None:intergenic |
| TATTGCTCAGCTAAGAGATT+TGG | 0.321661 | 6_4:-22489671 | Msa0982780:CDS |
| TGGGTGACTTGTGCTGAATT+TGG | 0.333001 | 6_4:+22490139 | None:intergenic |
| ACATTTGCTTGGAAATCCTT+TGG | 0.336033 | 6_4:+22488848 | None:intergenic |
| AAATCACAGAATCTACCTTT+TGG | 0.342438 | 6_4:-22488562 | Msa0982780:CDS |
| GGCCTAGCCTTGTTCATGTA+AGG | 0.342464 | 6_4:+22488644 | None:intergenic |
| ACAAGATATTCTGTTAAGTC+TGG | 0.343741 | 6_4:+22491378 | None:intergenic |
| TGGCTTTGTGGTGTCGGCTT+GGG | 0.349699 | 6_4:-22488280 | Msa0982780:three_prime_UTR |
| CGTCCCAAGCATGAGGGATT+TGG | 0.356445 | 6_4:-22488942 | Msa0982780:CDS |
| GTGTTCTCCTCTCAAGATCT+TGG | 0.357805 | 6_4:-22488250 | Msa0982780:three_prime_UTR |
| GGGAAGCAAGTAGTATTTAC+AGG | 0.360053 | 6_4:-22490237 | Msa0982780:CDS |
| AGCCTATGAAGCTGAATTAG+AGG | 0.360951 | 6_4:-22489605 | Msa0982780:CDS |
| TGAGTTAAGGAGTTGTTGTT+AGG | 0.376501 | 6_4:+22489934 | None:intergenic |
| ATCCTACCTTCATAAAGTTA+TGG | 0.377452 | 6_4:-22488400 | Msa0982780:CDS |
| TTATAAGCTTTCCTGGATCA+TGG | 0.377775 | 6_4:-22491356 | Msa0982780:CDS |
| TGAGTGTACCTATACCTCTT+TGG | 0.384599 | 6_4:+22488623 | None:intergenic |
| GTGAAGAGGCTGGTGCTTGC+AGG | 0.385560 | 6_4:-22488827 | Msa0982780:CDS |
| TCCTACCTTCATAAAGTTAT+GGG | 0.394701 | 6_4:-22488399 | Msa0982780:CDS |
| GACGATCTTCCTTTGTCTGC+TGG | 0.394824 | 6_4:-22489541 | Msa0982780:CDS |
| TGACCAGTCCAAGGCTATCC+AGG | 0.399798 | 6_4:+22489488 | None:intergenic |
| TGTTCTCCTCTCAAGATCTT+GGG | 0.407220 | 6_4:-22488249 | Msa0982780:three_prime_UTR |
| CTCCTCTAATTCAGCTTCAT+AGG | 0.412451 | 6_4:+22489603 | None:intergenic |
| ATCTCAAAATCCAAAAGAAA+AGG | 0.414022 | 6_4:+22487866 | None:intergenic |
| CATGTTGCTTGTAATCTAAT+GGG | 0.415589 | 6_4:-22489838 | Msa0982780:CDS |
| CCAGCCTCTTCACATTTGCT+TGG | 0.416168 | 6_4:+22488837 | None:intergenic |
| GGGAAGCACAAATTTGTTGT+TGG | 0.425534 | 6_4:-22489818 | Msa0982780:CDS |
| TATTATTATTAGAATATAGT+TGG | 0.427276 | 6_4:-22487828 | Msa0982780:three_prime_UTR |
| AACATGGGTGGAGGATTAGT+TGG | 0.427379 | 6_4:-22491510 | Msa0982780:CDS |
| TTGGCTTTGTGGTGTCGGCT+TGG | 0.428368 | 6_4:-22488281 | Msa0982780:three_prime_UTR |
| GTCCATACAGGGATTTGCTC+TGG | 0.430339 | 6_4:-22488192 | Msa0982780:three_prime_UTR |
| TACCTGCAATTGTACTACTT+TGG | 0.431517 | 6_4:-22488069 | Msa0982780:three_prime_UTR |
| TTAAGTCCGTATAGACCCTT+TGG | 0.433280 | 6_4:-22489772 | Msa0982780:CDS |
| TGCCCAAAATGTTGCTAGAA+TGG | 0.436813 | 6_4:+22490191 | None:intergenic |
| TTAAATGAATAAATTCAATT+CGG | 0.437847 | 6_4:-22487773 | Msa0982780:three_prime_UTR |
| TAAGTCCCAAAGGGTCTATA+CGG | 0.439330 | 6_4:+22489766 | None:intergenic |
| CGACTGTGCCTTCGAGCAGC+TGG | 0.442716 | 6_4:-22489028 | Msa0982780:CDS |
| TCTTATTGGATCTTGAGTTA+AGG | 0.444425 | 6_4:+22489921 | None:intergenic |
| AGCCAAAGTAGTACAATTGC+AGG | 0.444514 | 6_4:+22488067 | None:intergenic |
| CTGTTAAAGAATAAATCAAT+TGG | 0.444789 | 6_4:-22488325 | Msa0982780:exon |
| AGTAAAGAGAGCGGAGATGC+AGG | 0.445854 | 6_4:+22488346 | None:intergenic |
| TTTCATTTGCTTAAAAGTGT+TGG | 0.452737 | 6_4:-22491273 | Msa0982780:CDS |
| TATTTACAGGGCACTCTTCA+GGG | 0.453902 | 6_4:-22490224 | Msa0982780:CDS |
| AGGCTAGGCCAAAGAGGTAT+AGG | 0.454952 | 6_4:-22488631 | Msa0982780:CDS |
| TTCTTCCACCTCAGCCCAAA+AGG | 0.454957 | 6_4:+22488547 | None:intergenic |
| GATCATGGGTTGAAACTGAT+TGG | 0.460780 | 6_4:-22491341 | Msa0982780:CDS |
| TACCGACATTGCAGCCGCCC+TGG | 0.465765 | 6_4:-22489506 | Msa0982780:CDS |
| CTTTCCTTGATATCTTCAAA+AGG | 0.465824 | 6_4:+22488497 | None:intergenic |
| ACGAGTTGGCTTTGTGGTGT+CGG | 0.469386 | 6_4:-22488286 | Msa0982780:three_prime_UTR |
| CTTCCTTTGTCTGCTGGTGA+TGG | 0.469626 | 6_4:-22489535 | Msa0982780:CDS |
| ATCCTTTGAGAACACATCCT+TGG | 0.470085 | 6_4:+22488421 | None:intergenic |
| TATAAGCTTTCCTGGATCAT+GGG | 0.470863 | 6_4:-22491355 | Msa0982780:CDS |
| GGAGTCAAAAGCTGAAGAAC+AGG | 0.474277 | 6_4:+22489955 | None:intergenic |
| CTTCCAAATCCCTCATGCTT+GGG | 0.479202 | 6_4:+22488939 | None:intergenic |
| TGATGCCTTCAAGGTGCAAA+AGG | 0.480497 | 6_4:-22488873 | Msa0982780:CDS |
| GATGGTTGGAGCATGCAAAC+AGG | 0.482208 | 6_4:-22488598 | Msa0982780:CDS |
| ATGACCACTTCAACACTCCT+TGG | 0.487533 | 6_4:-22488108 | Msa0982780:three_prime_UTR |
| CGAATCTGTTGAAGAAAGCT+TGG | 0.491323 | 6_4:+22491226 | None:intergenic |
| ACCCACACGAGTTGGCTTTG+TGG | 0.491349 | 6_4:-22488292 | Msa0982780:three_prime_UTR |
| CTTGAGAGGAGAACACTTCA+AGG | 0.492532 | 6_4:+22488257 | None:intergenic |
| ATCCAGGGCGGCTGCAATGT+CGG | 0.493844 | 6_4:+22489504 | None:intergenic |
| TCAGTTTCAACCCATGATCC+AGG | 0.497864 | 6_4:+22491345 | None:intergenic |
| CAAGATATTCTGTTAAGTCT+GGG | 0.499249 | 6_4:+22491379 | None:intergenic |
| TCTTCCAAATCCCTCATGCT+TGG | 0.500980 | 6_4:+22488938 | None:intergenic |
| TGGTTTGTTAGAAAATCATT+TGG | 0.503071 | 6_4:-22491321 | Msa0982780:CDS |
| TGTGAGATAAACAATGGAAA+AGG | 0.505004 | 6_4:-22488902 | Msa0982780:CDS |
| AGCCAGAGCAAATCCCTGTA+TGG | 0.506443 | 6_4:+22488190 | None:intergenic |
| CGCCCTGGATAGCCTTGGAC+TGG | 0.507505 | 6_4:-22489491 | Msa0982780:intron |
| TCTCAAAATCCAAAAGAAAA+GGG | 0.509972 | 6_4:+22487867 | None:intergenic |
| AGGTGGAAGAACTTTGCAGC+TGG | 0.514870 | 6_4:-22488535 | Msa0982780:CDS |
| TAAAATGTGGACTGATAAAG+AGG | 0.520001 | 6_4:-22488450 | Msa0982780:CDS |
| ATTGACTTATATTTATGAGA+AGG | 0.521179 | 6_4:+22488139 | None:intergenic |
| AGTTTCCCATAACTTTATGA+AGG | 0.522028 | 6_4:+22488394 | None:intergenic |
| AGGTTATTATGATGCCTTCA+AGG | 0.524131 | 6_4:-22488882 | Msa0982780:CDS |
| GCAGCCGCCCTGGATAGCCT+TGG | 0.528324 | 6_4:-22489496 | Msa0982780:CDS |
| ACTTTCCTCATTTGTAGCTG+AGG | 0.530674 | 6_4:-22491190 | Msa0982780:intron |
| GCTGAATTAGAGGAGAGCTT+AGG | 0.531773 | 6_4:-22489595 | Msa0982780:CDS |
| TCACCGTCATTTGAAGAATG+AGG | 0.532372 | 6_4:-22488675 | Msa0982780:CDS |
| ATCTATAAACCCACACGAGT+TGG | 0.534080 | 6_4:-22488300 | Msa0982780:three_prime_UTR |
| ATTCTTGAATTTAACGCACT+CGG | 0.543530 | 6_4:+22487943 | None:intergenic |
| TAAGTCCGTATAGACCCTTT+GGG | 0.545191 | 6_4:-22489771 | Msa0982780:CDS |
| TGGCAATGATGAAACTGCTT+TGG | 0.552119 | 6_4:-22491253 | Msa0982780:CDS |
| CAGAAAATGTAAGTCCCAAA+GGG | 0.552723 | 6_4:+22489757 | None:intergenic |
| CCAAGCAAATGTGAAGAGGC+TGG | 0.554758 | 6_4:-22488837 | Msa0982780:CDS |
| AACTGCCAGATGAGTTTGAA+GGG | 0.559752 | 6_4:-22488766 | Msa0982780:CDS |
| GTTATGGGAAACTCTACCTC+AGG | 0.565285 | 6_4:-22488384 | Msa0982780:CDS |
| CACCACAAAGCCAACTCGTG+TGG | 0.566126 | 6_4:+22488290 | None:intergenic |
| CCATTAGATTACAAGCAACA+TGG | 0.567203 | 6_4:+22489839 | None:intergenic |
| GTGAAGAAAGCCATAACAGA+AGG | 0.568972 | 6_4:-22490258 | Msa0982780:CDS |
| AAATCATTGAAATGCTGAAG+AGG | 0.569071 | 6_4:-22488793 | Msa0982780:CDS |
| AGAAGGTTCCCCACTAGCGA+GGG | 0.569356 | 6_4:+22488156 | None:intergenic |
| TAGGTACACTCAGAGATGGT+TGG | 0.571876 | 6_4:-22488612 | Msa0982780:CDS |
| GCTGGTGCTTGCAGGAGTAT+GGG | 0.572068 | 6_4:-22488819 | Msa0982780:CDS |
| AAATATAGAAACATGGGTGG+AGG | 0.573924 | 6_4:-22491519 | Msa0982780:CDS |
| GCAGAAAATGTAAGTCCCAA+AGG | 0.575631 | 6_4:+22489756 | None:intergenic |
| TGTCCTCATTCTTCAAATGA+CGG | 0.579585 | 6_4:+22488672 | None:intergenic |
| TGATAAAGAGGTACTATCCA+AGG | 0.580893 | 6_4:-22488438 | Msa0982780:CDS |
| ATTAATTACTGACCAGTCCA+AGG | 0.584798 | 6_4:+22489479 | None:intergenic |
| ACATACCTCAGCTACAAATG+AGG | 0.585270 | 6_4:+22491185 | None:intergenic |
| TCCCATAACTTTATGAAGGT+AGG | 0.586787 | 6_4:+22488398 | None:intergenic |
| ATCCAAGGATGTGTTCTCAA+AGG | 0.587180 | 6_4:-22488423 | Msa0982780:CDS |
| CACAGGACCTTACATGAACA+AGG | 0.587269 | 6_4:-22488651 | Msa0982780:CDS |
| TTCTTTAACAGTAAAGAGAG+CGG | 0.588257 | 6_4:+22488337 | None:intergenic |
| GACCAGTCCAAGGCTATCCA+GGG | 0.591652 | 6_4:+22489489 | None:intergenic |
| TTTGAACCCAAGATCTTGAG+AGG | 0.593345 | 6_4:+22488243 | None:intergenic |
| AGAAGGCCGTCCCAAGCATG+AGG | 0.597386 | 6_4:-22488949 | Msa0982780:CDS |
| CAAGGTGCAAAAGGATCCAA+AGG | 0.597796 | 6_4:-22488864 | Msa0982780:CDS |
| CTAACTCGCCAGCTGCTCGA+AGG | 0.598382 | 6_4:+22489020 | None:intergenic |
| AGGTTCCCCACTAGCGAGGG+GGG | 0.600240 | 6_4:+22488159 | None:intergenic |
| ACAAACCAAATATAGAAACA+TGG | 0.601241 | 6_4:-22491526 | Msa0982780:CDS |
| GAACTGCCAGATGAGTTTGA+AGG | 0.604489 | 6_4:-22488767 | Msa0982780:CDS |
| GAATATATGATTACCAACCA+AGG | 0.604755 | 6_4:+22490095 | None:intergenic |
| TTTCTGGGCTAGTCCATACA+GGG | 0.606434 | 6_4:-22488203 | Msa0982780:three_prime_UTR |
| GACCTTACATGAACAAGGCT+AGG | 0.606472 | 6_4:-22488646 | Msa0982780:CDS |
| CAATGAGATGACAGAACATG+TGG | 0.606675 | 6_4:+22488030 | None:intergenic |
| TGCAATATGACATTGTGCCA+AGG | 0.607100 | 6_4:-22490020 | Msa0982780:CDS |
| GATGTAGATTTATGTTCCTG+AGG | 0.607470 | 6_4:+22488368 | None:intergenic |
| GAGAAGGTTCCCCACTAGCG+AGG | 0.607629 | 6_4:+22488155 | None:intergenic |
| GGATTAGTTGGAGACAACAT+AGG | 0.610678 | 6_4:-22491498 | Msa0982780:CDS |
| TTGAACTGCTGTGACTATTG+TGG | 0.611508 | 6_4:+22487744 | None:intergenic |
| ATTTACAGGGCACTCTTCAG+GGG | 0.612403 | 6_4:-22490223 | Msa0982780:CDS |
| TCAACATGTGAGATAAACAA+TGG | 0.616431 | 6_4:-22488908 | Msa0982780:CDS |
| TGGTAATGGCCAGCTGATTG+TGG | 0.617049 | 6_4:-22489731 | Msa0982780:CDS |
| CAAATCCCTCATGCTTGGGA+CGG | 0.617619 | 6_4:+22488943 | None:intergenic |
| TGAAGAAAGCCATAACAGAA+GGG | 0.618618 | 6_4:-22490257 | Msa0982780:CDS |
| AATATATGATTACCAACCAA+GGG | 0.624396 | 6_4:+22490096 | None:intergenic |
| CAAACCAAATATAGAAACAT+GGG | 0.624800 | 6_4:-22491525 | Msa0982780:CDS |
| ATTTCCAAGCAAATGTGAAG+AGG | 0.629078 | 6_4:-22488841 | Msa0982780:CDS |
| ACCAAATATAGAAACATGGG+TGG | 0.631722 | 6_4:-22491522 | Msa0982780:CDS |
| ACCACAAAGCCAACTCGTGT+GGG | 0.632523 | 6_4:+22488291 | None:intergenic |
| AAGGTTCCCCACTAGCGAGG+GGG | 0.632642 | 6_4:+22488158 | None:intergenic |
| GGTATAGGTACACTCAGAGA+TGG | 0.637909 | 6_4:-22488616 | Msa0982780:CDS |
| TTGAGCAAGATATTAAAATG+TGG | 0.638522 | 6_4:-22488463 | Msa0982780:CDS |
| TGATAATTGGCAATATCTAG+AGG | 0.642810 | 6_4:+22488695 | None:intergenic |
| CTAGAGGCTCAACAAGTCGA+CGG | 0.644029 | 6_4:+22488711 | None:intergenic |
| TGAACAAGGCTAGGCCAAAG+AGG | 0.645683 | 6_4:-22488637 | Msa0982780:CDS |
| AAGATATTCTGTTAAGTCTG+GGG | 0.645763 | 6_4:+22491380 | None:intergenic |
| TGACCATCACCAGCAGACAA+AGG | 0.649953 | 6_4:+22489532 | None:intergenic |
| GAAGGCCGTCCCAAGCATGA+GGG | 0.652947 | 6_4:-22488948 | Msa0982780:CDS |
| GAACCAAAAGTGACACACAT+GGG | 0.654173 | 6_4:+22490120 | None:intergenic |
| GAAGGTTCCCCACTAGCGAG+GGG | 0.657462 | 6_4:+22488157 | None:intergenic |
| GTATTCTTCATTCTTCAACA+AGG | 0.664683 | 6_4:-22487998 | Msa0982780:three_prime_UTR |
| CAACATAGGACTAAACGAAG+AGG | 0.670301 | 6_4:-22491484 | Msa0982780:CDS |
| AGAACCAAAAGTGACACACA+TGG | 0.671365 | 6_4:+22490119 | None:intergenic |
| GGAAGCAAGTAGTATTTACA+GGG | 0.671568 | 6_4:-22490236 | Msa0982780:CDS |
| GAGCTTAGGAATGCAAAATG+TGG | 0.681078 | 6_4:-22489581 | Msa0982780:CDS |
| CAGTCCAAGGCTATCCAGGG+CGG | 0.692022 | 6_4:+22489492 | None:intergenic |
| TGCTGCATTCCTCATCACAG+TGG | 0.699489 | 6_4:+22489873 | None:intergenic |
| CATTTGAAGAATGAGGACAC+AGG | 0.760387 | 6_4:-22488668 | Msa0982780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTTTCTTTTTATT+TGG | - | chr6_4:22488190-22488209 | Msa0982780:three_prime_UTR | 10.0% |
| !!! | AAATAGTTTAGTTAATTTTT+TGG | - | chr6_4:22488943-22488962 | Msa0982780:CDS | 10.0% |
| !! | TATTATTATTAGAATATAGT+TGG | - | chr6_4:22491485-22491504 | Msa0982780:CDS | 10.0% |
| !! | TTAAATGAATAAATTCAATT+CGG | - | chr6_4:22491540-22491559 | Msa0982780:CDS | 10.0% |
| !!! | TTTTTCAATTAAGATAACAT+TGG | - | chr6_4:22488427-22488446 | Msa0982780:CDS | 15.0% |
| !! | AAATGAAGAGAAAATAAAAA+AGG | - | chr6_4:22490332-22490351 | Msa0982780:intron | 15.0% |
| !! | TTAAACACTTCTGTAATATA+AGG | + | chr6_4:22487908-22487927 | None:intergenic | 20.0% |
| !! | AATAATAATGAAAGATTGTG+TGG | + | chr6_4:22488171-22488190 | None:intergenic | 20.0% |
| !!! | TCTTTCTTTTTATTTGGAAT+TGG | - | chr6_4:22488196-22488215 | Msa0982780:three_prime_UTR | 20.0% |
| !! | TTTATAGCTTATAAGTTCAT+AGG | - | chr6_4:22488256-22488275 | Msa0982780:three_prime_UTR | 20.0% |
| !!! | GTTATTAAACATGTCTATTT+TGG | + | chr6_4:22488283-22488302 | None:intergenic | 20.0% |
| !! | ATGACTAAAAAGGATATATT+TGG | + | chr6_4:22488560-22488579 | None:intergenic | 20.0% |
| !! | ATAAAAAATGGTTATGGATT+TGG | + | chr6_4:22488634-22488653 | None:intergenic | 20.0% |
| !! | TAGCTTATAAAAAATGGTTA+TGG | + | chr6_4:22488640-22488659 | None:intergenic | 20.0% |
| !! | TTGAAGTAGCTTATAAAAAA+TGG | + | chr6_4:22488646-22488665 | None:intergenic | 20.0% |
| !! | ATTGTTTCAATTAAGATAAC+TGG | + | chr6_4:22488706-22488725 | None:intergenic | 20.0% |
| !!! | ATTTCACAAATTATCTGTTT+TGG | - | chr6_4:22488902-22488921 | Msa0982780:CDS | 20.0% |
| !! | TATAAGATCTATCATATTGA+AGG | + | chr6_4:22490135-22490154 | None:intergenic | 20.0% |
| !! | CTGTTAAAGAATAAATCAAT+TGG | - | chr6_4:22490988-22491007 | Msa0982780:intron | 20.0% |
| !!! | ATTGACTTATATTTATGAGA+AGG | + | chr6_4:22491177-22491196 | None:intergenic | 20.0% |
| !!! | ACAAAAGTTTTTATTTTCCA+AGG | + | chr6_4:22491225-22491244 | None:intergenic | 20.0% |
| ! | TTGTGTTTGTTTCATTTCAT+TGG | + | chr6_4:22487771-22487790 | None:intergenic | 25.0% |
| ! | ACAAACCAAATATAGAAACA+TGG | - | chr6_4:22487787-22487806 | Msa0982780:three_prime_UTR | 25.0% |
| ! | CAAACCAAATATAGAAACAT+GGG | - | chr6_4:22487788-22487807 | Msa0982780:three_prime_UTR | 25.0% |
| !!! | TGGTTTGTTAGAAAATCATT+TGG | - | chr6_4:22487992-22488011 | Msa0982780:three_prime_UTR | 25.0% |
| !! | TTTCATTTGCTTAAAAGTGT+TGG | - | chr6_4:22488040-22488059 | Msa0982780:three_prime_UTR | 25.0% |
| !!! | TCTTTTTATTTGGAATTGGA+TGG | - | chr6_4:22488200-22488219 | Msa0982780:three_prime_UTR | 25.0% |
| ! | TATACTTGATGAACTTATAG+CGG | - | chr6_4:22488307-22488326 | Msa0982780:three_prime_UTR | 25.0% |
| ! | ATTTGTAGTGATTGGTAAAT+AGG | - | chr6_4:22488377-22488396 | Msa0982780:CDS | 25.0% |
| ! | ATATAAGCTACTTGAATTAG+TGG | - | chr6_4:22488454-22488473 | Msa0982780:CDS | 25.0% |
| ! | ATATGCTCATATGACTAAAA+AGG | + | chr6_4:22488570-22488589 | None:intergenic | 25.0% |
| ! | TTAATGTGACAAACAACATT+AGG | + | chr6_4:22488867-22488886 | None:intergenic | 25.0% |
| ! | TTGTGAAATTACTCAAATCA+TGG | + | chr6_4:22488891-22488910 | None:intergenic | 25.0% |
| ! | AATATATGATTACCAACCAA+GGG | + | chr6_4:22489220-22489239 | None:intergenic | 25.0% |
| !!! | TCAACCATTATTTTAAACCT+TGG | - | chr6_4:22490008-22490027 | Msa0982780:CDS | 25.0% |
| !! | CTAACCAAGGTTTAAAATAA+TGG | + | chr6_4:22490015-22490034 | None:intergenic | 25.0% |
| ! | GAAAATAAAAAAGGAGTTTC+AGG | - | chr6_4:22490341-22490360 | Msa0982780:intron | 25.0% |
| !!! | AAAAAAGAATGGATTGAACT+CGG | - | chr6_4:22490570-22490589 | Msa0982780:intron | 25.0% |
| !!! | TAAACCTTTTGAAGATATCA+AGG | - | chr6_4:22490812-22490831 | Msa0982780:intron | 25.0% |
| !!! | TTTTGAAGATATCAAGGAAA+GGG | - | chr6_4:22490818-22490837 | Msa0982780:intron | 25.0% |
| ! | TTGAGCAAGATATTAAAATG+TGG | - | chr6_4:22490850-22490869 | Msa0982780:intron | 25.0% |
| !! | ATTTGTACTTTTAGATGCTT+AGG | - | chr6_4:22491399-22491418 | Msa0982780:CDS | 25.0% |
| !! | TTTGTACTTTTAGATGCTTA+GGG | - | chr6_4:22491400-22491419 | Msa0982780:CDS | 25.0% |
| ! | TCTCAAAATCCAAAAGAAAA+GGG | + | chr6_4:22491449-22491468 | None:intergenic | 25.0% |
| ! | ATCTCAAAATCCAAAAGAAA+AGG | + | chr6_4:22491450-22491469 | None:intergenic | 25.0% |
| AAGATATTCTGTTAAGTCTG+GGG | + | chr6_4:22487936-22487955 | None:intergenic | 30.0% | |
| CAAGATATTCTGTTAAGTCT+GGG | + | chr6_4:22487937-22487956 | None:intergenic | 30.0% | |
| ACAAGATATTCTGTTAAGTC+TGG | + | chr6_4:22487938-22487957 | None:intergenic | 30.0% | |
| ! | TATCTTGTTATAAGCTTTCC+TGG | - | chr6_4:22487950-22487969 | Msa0982780:three_prime_UTR | 30.0% |
| CTGATTGAATTTGTAGTGAT+TGG | - | chr6_4:22488369-22488388 | Msa0982780:CDS | 30.0% | |
| TTGGTGAAAACATAACAGAT+AGG | + | chr6_4:22488839-22488858 | None:intergenic | 30.0% | |
| CAAACAACATTAGGACTATT+TGG | + | chr6_4:22488858-22488877 | None:intergenic | 30.0% | |
| GAATATATGATTACCAACCA+AGG | + | chr6_4:22489221-22489240 | None:intergenic | 30.0% | |
| ATGCTTCAAACAGAGAAAAA+TGG | - | chr6_4:22489245-22489264 | Msa0982780:intron | 30.0% | |
| !! | AGTTTTTCAATGGAAGAGAA+AGG | + | chr6_4:22489331-22489350 | None:intergenic | 30.0% |
| !! | AGGACTAATGAGTTTTTCAA+TGG | + | chr6_4:22489341-22489360 | None:intergenic | 30.0% |
| TCTTATTGGATCTTGAGTTA+AGG | + | chr6_4:22489395-22489414 | None:intergenic | 30.0% | |
| ! | CATGTTGCTTGTAATCTAAT+GGG | - | chr6_4:22489475-22489494 | Msa0982780:intron | 30.0% |
| ! | TACATTTTCTGCAATGGTAA+TGG | - | chr6_4:22489568-22489587 | Msa0982780:CDS | 30.0% |
| TCAACATGTGAGATAAACAA+TGG | - | chr6_4:22490405-22490424 | Msa0982780:intron | 30.0% | |
| TGTGAGATAAACAATGGAAA+AGG | - | chr6_4:22490411-22490430 | Msa0982780:intron | 30.0% | |
| AAATCATTGAAATGCTGAAG+AGG | - | chr6_4:22490520-22490539 | Msa0982780:intron | 30.0% | |
| AGTTTGAAGGGAAAAAAGAA+TGG | - | chr6_4:22490559-22490578 | Msa0982780:intron | 30.0% | |
| TGATAATTGGCAATATCTAG+AGG | + | chr6_4:22490621-22490640 | None:intergenic | 30.0% | |
| ! | AAATCACAGAATCTACCTTT+TGG | - | chr6_4:22490751-22490770 | Msa0982780:intron | 30.0% |
| ! | AATCACAGAATCTACCTTTT+GGG | - | chr6_4:22490752-22490771 | Msa0982780:intron | 30.0% |
| CTTTCCTTGATATCTTCAAA+AGG | + | chr6_4:22490819-22490838 | None:intergenic | 30.0% | |
| !! | CTTTTGAAGATATCAAGGAA+AGG | - | chr6_4:22490817-22490836 | Msa0982780:intron | 30.0% |
| ! | TAAAATGTGGACTGATAAAG+AGG | - | chr6_4:22490863-22490882 | Msa0982780:intron | 30.0% |
| ATCCTACCTTCATAAAGTTA+TGG | - | chr6_4:22490913-22490932 | Msa0982780:intron | 30.0% | |
| TCCTACCTTCATAAAGTTAT+GGG | - | chr6_4:22490914-22490933 | Msa0982780:intron | 30.0% | |
| AGTTTCCCATAACTTTATGA+AGG | + | chr6_4:22490922-22490941 | None:intergenic | 30.0% | |
| TTCTTTAACAGTAAAGAGAG+CGG | + | chr6_4:22490979-22490998 | None:intergenic | 30.0% | |
| !!! | CTCCTAATGTCATTTTTTCT+GGG | - | chr6_4:22491095-22491114 | Msa0982780:intron | 30.0% |
| ! | TTCTGTCATCTCATTGTTTT+AGG | - | chr6_4:22491290-22491309 | Msa0982780:CDS | 30.0% |
| GTATTCTTCATTCTTCAACA+AGG | - | chr6_4:22491315-22491334 | Msa0982780:CDS | 30.0% | |
| ATTCTTGAATTTAACGCACT+CGG | + | chr6_4:22491373-22491392 | None:intergenic | 30.0% | |
| ! | TTGTACTTTTAGATGCTTAG+GGG | - | chr6_4:22491401-22491420 | Msa0982780:CDS | 30.0% |
| ACCAAATATAGAAACATGGG+TGG | - | chr6_4:22487791-22487810 | Msa0982780:three_prime_UTR | 35.0% | |
| ! | TCCACCCATGTTTCTATATT+TGG | + | chr6_4:22487795-22487814 | None:intergenic | 35.0% |
| AAATATAGAAACATGGGTGG+AGG | - | chr6_4:22487794-22487813 | Msa0982780:three_prime_UTR | 35.0% | |
| TTATAAGCTTTCCTGGATCA+TGG | - | chr6_4:22487957-22487976 | Msa0982780:three_prime_UTR | 35.0% | |
| TATAAGCTTTCCTGGATCAT+GGG | - | chr6_4:22487958-22487977 | Msa0982780:three_prime_UTR | 35.0% | |
| TAATGAAAGATTGTGTGGCA+GGG | + | chr6_4:22488166-22488185 | None:intergenic | 35.0% | |
| ATAATGAAAGATTGTGTGGC+AGG | + | chr6_4:22488167-22488186 | None:intergenic | 35.0% | |
| TATTAGCGCAAAATTTGTCG+TGG | + | chr6_4:22488228-22488247 | None:intergenic | 35.0% | |
| CGATAAGCTAGCTGATTATT+TGG | + | chr6_4:22488816-22488835 | None:intergenic | 35.0% | |
| TGCAATGCAACACATTTGAT+TGG | + | chr6_4:22489034-22489053 | None:intergenic | 35.0% | |
| AATCAAATGTGTTGCATTGC+AGG | - | chr6_4:22489033-22489052 | Msa0982780:CDS | 35.0% | |
| TGAAGAAAGCCATAACAGAA+GGG | - | chr6_4:22489056-22489075 | Msa0982780:intron | 35.0% | |
| GGAAGCAAGTAGTATTTACA+GGG | - | chr6_4:22489077-22489096 | Msa0982780:intron | 35.0% | |
| !!! | GCTGAATTTGGATTTTGGTT+GGG | + | chr6_4:22489165-22489184 | None:intergenic | 35.0% |
| !! | TGCTGAATTTGGATTTTGGT+TGG | + | chr6_4:22489166-22489185 | None:intergenic | 35.0% |
| ! | CTTGTGCTGAATTTGGATTT+TGG | + | chr6_4:22489170-22489189 | None:intergenic | 35.0% |
| ! | TGAGTTAAGGAGTTGTTGTT+AGG | + | chr6_4:22489382-22489401 | None:intergenic | 35.0% |
| CCATTAGATTACAAGCAACA+TGG | + | chr6_4:22489477-22489496 | None:intergenic | 35.0% | |
| ! | CCATGTTGCTTGTAATCTAA+TGG | - | chr6_4:22489474-22489493 | Msa0982780:intron | 35.0% |
| CAGAAAATGTAAGTCCCAAA+GGG | + | chr6_4:22489559-22489578 | None:intergenic | 35.0% | |
| !!! | AGTTTTTTACCACAATCAGC+TGG | + | chr6_4:22489594-22489613 | None:intergenic | 35.0% |
| TATTGCTCAGCTAAGAGATT+TGG | - | chr6_4:22489642-22489661 | Msa0982780:CDS | 35.0% | |
| ATTAATTACTGACCAGTCCA+AGG | + | chr6_4:22489837-22489856 | None:intergenic | 35.0% | |
| ACAATAACATGCTCTAACCA+AGG | + | chr6_4:22490028-22490047 | None:intergenic | 35.0% | |
| ACCATCCATTTACGATTGTA+TGG | - | chr6_4:22490065-22490084 | Msa0982780:CDS | 35.0% | |
| ACCATACAATCGTAAATGGA+TGG | + | chr6_4:22490069-22490088 | None:intergenic | 35.0% | |
| CTTGACCATACAATCGTAAA+TGG | + | chr6_4:22490073-22490092 | None:intergenic | 35.0% | |
| AAAAAAGGAGTTTCAGGAGA+AGG | - | chr6_4:22490347-22490366 | Msa0982780:intron | 35.0% | |
| AGGTTATTATGATGCCTTCA+AGG | - | chr6_4:22490431-22490450 | Msa0982780:intron | 35.0% | |
| ACATTTGCTTGGAAATCCTT+TGG | + | chr6_4:22490468-22490487 | None:intergenic | 35.0% | |
| ATTTCCAAGCAAATGTGAAG+AGG | - | chr6_4:22490472-22490491 | Msa0982780:intron | 35.0% | |
| ! | TTTTTCCCTTCAAACTCATC+TGG | + | chr6_4:22490555-22490574 | None:intergenic | 35.0% |
| CTTCAAATGACGGTGATAAT+TGG | + | chr6_4:22490634-22490653 | None:intergenic | 35.0% | |
| TGTCCTCATTCTTCAAATGA+CGG | + | chr6_4:22490644-22490663 | None:intergenic | 35.0% | |
| ! | GATTCTGTGATTTCTGCTTT+TGG | + | chr6_4:22490744-22490763 | None:intergenic | 35.0% |
| !! | TGATAAAGAGGTACTATCCA+AGG | - | chr6_4:22490875-22490894 | Msa0982780:intron | 35.0% |
| TCCCATAACTTTATGAAGGT+AGG | + | chr6_4:22490918-22490937 | None:intergenic | 35.0% | |
| GATGTAGATTTATGTTCCTG+AGG | + | chr6_4:22490948-22490967 | None:intergenic | 35.0% | |
| CCAGAAAAAATGACATTAGG+AGG | + | chr6_4:22491097-22491116 | None:intergenic | 35.0% | |
| !!! | CCTCCTAATGTCATTTTTTC+TGG | - | chr6_4:22491094-22491113 | Msa0982780:intron | 35.0% |
| AGCCCAGAAAAAATGACATT+AGG | + | chr6_4:22491100-22491119 | None:intergenic | 35.0% | |
| TACCTGCAATTGTACTACTT+TGG | - | chr6_4:22491244-22491263 | Msa0982780:CDS | 35.0% | |
| ! | GATCATTAGCCCTTTTCTTT+TGG | - | chr6_4:22491437-22491456 | Msa0982780:CDS | 35.0% |
| !! | GGATTAGTTGGAGACAACAT+AGG | - | chr6_4:22487815-22487834 | Msa0982780:three_prime_UTR | 40.0% |
| CAACATAGGACTAAACGAAG+AGG | - | chr6_4:22487829-22487848 | Msa0982780:three_prime_UTR | 40.0% | |
| ! | GATCATGGGTTGAAACTGAT+TGG | - | chr6_4:22487972-22487991 | Msa0982780:three_prime_UTR | 40.0% |
| TGGCAATGATGAAACTGCTT+TGG | - | chr6_4:22488060-22488079 | Msa0982780:three_prime_UTR | 40.0% | |
| CGAATCTGTTGAAGAAAGCT+TGG | + | chr6_4:22488090-22488109 | None:intergenic | 40.0% | |
| ACTTTCCTCATTTGTAGCTG+AGG | - | chr6_4:22488123-22488142 | Msa0982780:three_prime_UTR | 40.0% | |
| ACATACCTCAGCTACAAATG+AGG | + | chr6_4:22488131-22488150 | None:intergenic | 40.0% | |
| ! | CTTGATGAACTTATAGCGGA+TGG | - | chr6_4:22488311-22488330 | Msa0982780:three_prime_UTR | 40.0% |
| AGATACTCGTGAGAAAGTGA+CGG | - | chr6_4:22488531-22488550 | Msa0982780:CDS | 40.0% | |
| GTGAAGAAAGCCATAACAGA+AGG | - | chr6_4:22489055-22489074 | Msa0982780:intron | 40.0% | |
| TACTTGCTTCCCTTCTGTTA+TGG | + | chr6_4:22489068-22489087 | None:intergenic | 40.0% | |
| GGGAAGCAAGTAGTATTTAC+AGG | - | chr6_4:22489076-22489095 | Msa0982780:intron | 40.0% | |
| ! | TATTTACAGGGCACTCTTCA+GGG | - | chr6_4:22489089-22489108 | Msa0982780:intron | 40.0% |
| ! | TGGCCATTCTAGCAACATTT+TGG | - | chr6_4:22489119-22489138 | Msa0982780:intron | 40.0% |
| ! | GGCCATTCTAGCAACATTTT+GGG | - | chr6_4:22489120-22489139 | Msa0982780:intron | 40.0% |
| TGCCCAAAATGTTGCTAGAA+TGG | + | chr6_4:22489125-22489144 | None:intergenic | 40.0% | |
| ! | TCTAGCAACATTTTGGGCAT+TGG | - | chr6_4:22489126-22489145 | Msa0982780:intron | 40.0% |
| GAACCAAAAGTGACACACAT+GGG | + | chr6_4:22489196-22489215 | None:intergenic | 40.0% | |
| AGAACCAAAAGTGACACACA+TGG | + | chr6_4:22489197-22489216 | None:intergenic | 40.0% | |
| TGCAATATGACATTGTGCCA+AGG | - | chr6_4:22489293-22489312 | Msa0982780:intron | 40.0% | |
| AAAGGAGCGAGAAAAATCCT+TGG | + | chr6_4:22489313-22489332 | None:intergenic | 40.0% | |
| CAAGTCACACTGTCTCTTAT+TGG | + | chr6_4:22489409-22489428 | None:intergenic | 40.0% | |
| ! | AGTTTTACTCCACTGTGATG+AGG | - | chr6_4:22489431-22489450 | Msa0982780:intron | 40.0% |
| !! | GGGAAGCACAAATTTGTTGT+TGG | - | chr6_4:22489495-22489514 | Msa0982780:CDS | 40.0% |
| TTAAGTCCGTATAGACCCTT+TGG | - | chr6_4:22489541-22489560 | Msa0982780:CDS | 40.0% | |
| TAAGTCCGTATAGACCCTTT+GGG | - | chr6_4:22489542-22489561 | Msa0982780:CDS | 40.0% | |
| TAAGTCCCAAAGGGTCTATA+CGG | + | chr6_4:22489550-22489569 | None:intergenic | 40.0% | |
| GCAGAAAATGTAAGTCCCAA+AGG | + | chr6_4:22489560-22489579 | None:intergenic | 40.0% | |
| ! | GGGACTTACATTTTCTGCAA+TGG | - | chr6_4:22489562-22489581 | Msa0982780:CDS | 40.0% |
| ! | ATGCTGCAGTATGCTTTTGT+TGG | + | chr6_4:22489686-22489705 | None:intergenic | 40.0% |
| AGCCTATGAAGCTGAATTAG+AGG | - | chr6_4:22489708-22489727 | Msa0982780:CDS | 40.0% | |
| CTCCTCTAATTCAGCTTCAT+AGG | + | chr6_4:22489713-22489732 | None:intergenic | 40.0% | |
| GAGCTTAGGAATGCAAAATG+TGG | - | chr6_4:22489732-22489751 | Msa0982780:CDS | 40.0% | |
| GTTAGAGCGAAGGTTTCAAA+AGG | - | chr6_4:22489897-22489916 | Msa0982780:CDS | 40.0% | |
| ! | GGTTTCAAAAGGTGTGATTG+TGG | - | chr6_4:22489908-22489927 | Msa0982780:CDS | 40.0% |
| AACTGCCAGATGAGTTTGAA+GGG | - | chr6_4:22490547-22490566 | Msa0982780:intron | 40.0% | |
| TCACCGTCATTTGAAGAATG+AGG | - | chr6_4:22490638-22490657 | Msa0982780:intron | 40.0% | |
| CATTTGAAGAATGAGGACAC+AGG | - | chr6_4:22490645-22490664 | Msa0982780:intron | 40.0% | |
| TGAGTGTACCTATACCTCTT+TGG | + | chr6_4:22490693-22490712 | None:intergenic | 40.0% | |
| ATCCAAGGATGTGTTCTCAA+AGG | - | chr6_4:22490890-22490909 | Msa0982780:intron | 40.0% | |
| ! | ATCCTTTGAGAACACATCCT+TGG | + | chr6_4:22490895-22490914 | None:intergenic | 40.0% |
| ATCTATAAACCCACACGAGT+TGG | - | chr6_4:22491013-22491032 | Msa0982780:intron | 40.0% | |
| TGTTCTCCTCTCAAGATCTT+GGG | - | chr6_4:22491064-22491083 | Msa0982780:intron | 40.0% | |
| TTTGAACCCAAGATCTTGAG+AGG | + | chr6_4:22491073-22491092 | None:intergenic | 40.0% | |
| !! | GGATTTGCTCTGGCTTTAAA+TGG | - | chr6_4:22491131-22491150 | Msa0982780:intron | 40.0% |
| !!! | TTTTCCAAGGAGTGTTGAAG+TGG | + | chr6_4:22491212-22491231 | None:intergenic | 40.0% |
| AGCCAAAGTAGTACAATTGC+AGG | + | chr6_4:22491249-22491268 | None:intergenic | 40.0% | |
| CAATGAGATGACAGAACATG+TGG | + | chr6_4:22491286-22491305 | None:intergenic | 40.0% | |
| ! | AACATGGGTGGAGGATTAGT+TGG | - | chr6_4:22487803-22487822 | Msa0982780:three_prime_UTR | 45.0% |
| TCAGTTTCAACCCATGATCC+AGG | + | chr6_4:22487971-22487990 | None:intergenic | 45.0% | |
| ! | GTATTTACAGGGCACTCTTC+AGG | - | chr6_4:22489088-22489107 | Msa0982780:intron | 45.0% |
| ! | ATTTACAGGGCACTCTTCAG+GGG | - | chr6_4:22489090-22489109 | Msa0982780:intron | 45.0% |
| ! | TGGGTGACTTGTGCTGAATT+TGG | + | chr6_4:22489177-22489196 | None:intergenic | 45.0% |
| !!! | TCACCCATGTGTGTCACTTT+TGG | - | chr6_4:22489190-22489209 | Msa0982780:intron | 45.0% |
| !!! | TGTCACTTTTGGTTCTCCCT+TGG | - | chr6_4:22489201-22489220 | Msa0982780:intron | 45.0% |
| !!! | ACTTTTGGTTCTCCCTTGGT+TGG | - | chr6_4:22489205-22489224 | Msa0982780:intron | 45.0% |
| GGAGTCAAAAGCTGAAGAAC+AGG | + | chr6_4:22489361-22489380 | None:intergenic | 45.0% | |
| GCTGAATTAGAGGAGAGCTT+AGG | - | chr6_4:22489718-22489737 | Msa0982780:CDS | 45.0% | |
| AGCGTATTGAGTTAGAGCGA+AGG | - | chr6_4:22489887-22489906 | Msa0982780:CDS | 45.0% | |
| CTTCCAAATCCCTCATGCTT+GGG | + | chr6_4:22490377-22490396 | None:intergenic | 45.0% | |
| TCTTCCAAATCCCTCATGCT+TGG | + | chr6_4:22490378-22490397 | None:intergenic | 45.0% | |
| TGATGCCTTCAAGGTGCAAA+AGG | - | chr6_4:22490440-22490459 | Msa0982780:intron | 45.0% | |
| ! | TGGATCCTTTTGCACCTTGA+AGG | + | chr6_4:22490448-22490467 | None:intergenic | 45.0% |
| CAAGGTGCAAAAGGATCCAA+AGG | - | chr6_4:22490449-22490468 | Msa0982780:intron | 45.0% | |
| GAACTGCCAGATGAGTTTGA+AGG | - | chr6_4:22490546-22490565 | Msa0982780:intron | 45.0% | |
| CACAGGACCTTACATGAACA+AGG | - | chr6_4:22490662-22490681 | Msa0982780:intron | 45.0% | |
| GACCTTACATGAACAAGGCT+AGG | - | chr6_4:22490667-22490686 | Msa0982780:intron | 45.0% | |
| GGTATAGGTACACTCAGAGA+TGG | - | chr6_4:22490697-22490716 | Msa0982780:intron | 45.0% | |
| TAGGTACACTCAGAGATGGT+TGG | - | chr6_4:22490701-22490720 | Msa0982780:intron | 45.0% | |
| ! | AGAATCTACCTTTTGGGCTG+AGG | - | chr6_4:22490758-22490777 | Msa0982780:intron | 45.0% |
| GTTATGGGAAACTCTACCTC+AGG | - | chr6_4:22490929-22490948 | Msa0982780:intron | 45.0% | |
| CTTGAGAGGAGAACACTTCA+AGG | + | chr6_4:22491059-22491078 | None:intergenic | 45.0% | |
| GTGTTCTCCTCTCAAGATCT+TGG | - | chr6_4:22491063-22491082 | Msa0982780:intron | 45.0% | |
| !!! | TTTTCTGGGCTAGTCCATAC+AGG | - | chr6_4:22491109-22491128 | Msa0982780:intron | 45.0% |
| !! | TTTCTGGGCTAGTCCATACA+GGG | - | chr6_4:22491110-22491129 | Msa0982780:intron | 45.0% |
| ATGACCACTTCAACACTCCT+TGG | - | chr6_4:22491205-22491224 | Msa0982780:CDS | 45.0% | |
| !! | AAAATAATTATTATAGATAA+AGG | - | chr6_4:22488978-22488997 | Msa0982780:CDS | 5.0% |
| TGCTGCATTCCTCATCACAG+TGG | + | chr6_4:22489443-22489462 | None:intergenic | 50.0% | |
| !! | TGGTAATGGCCAGCTGATTG+TGG | - | chr6_4:22489582-22489601 | Msa0982780:CDS | 50.0% |
| GACGATCTTCCTTTGTCTGC+TGG | - | chr6_4:22489772-22489791 | Msa0982780:CDS | 50.0% | |
| CTTCCTTTGTCTGCTGGTGA+TGG | - | chr6_4:22489778-22489797 | Msa0982780:CDS | 50.0% | |
| TGACCATCACCAGCAGACAA+AGG | + | chr6_4:22489784-22489803 | None:intergenic | 50.0% | |
| CTACACTGCGACTGCAATTG+TGG | - | chr6_4:22489966-22489985 | Msa0982780:CDS | 50.0% | |
| GTGAGAGCAGAAGATGCAAG+AGG | + | chr6_4:22490103-22490122 | None:intergenic | 50.0% | |
| CAAATCCCTCATGCTTGGGA+CGG | + | chr6_4:22490373-22490392 | None:intergenic | 50.0% | |
| CCAGCCTCTTCACATTTGCT+TGG | + | chr6_4:22490479-22490498 | None:intergenic | 50.0% | |
| CCAAGCAAATGTGAAGAGGC+TGG | - | chr6_4:22490476-22490495 | Msa0982780:intron | 50.0% | |
| CTAGAGGCTCAACAAGTCGA+CGG | + | chr6_4:22490605-22490624 | None:intergenic | 50.0% | |
| !! | GGCCTAGCCTTGTTCATGTA+AGG | + | chr6_4:22490672-22490691 | None:intergenic | 50.0% |
| TGAACAAGGCTAGGCCAAAG+AGG | - | chr6_4:22490676-22490695 | Msa0982780:intron | 50.0% | |
| ! | AGGCTAGGCCAAAGAGGTAT+AGG | - | chr6_4:22490682-22490701 | Msa0982780:intron | 50.0% |
| GATGGTTGGAGCATGCAAAC+AGG | - | chr6_4:22490715-22490734 | Msa0982780:intron | 50.0% | |
| ! | ATCTACCTTTTGGGCTGAGG+TGG | - | chr6_4:22490761-22490780 | Msa0982780:intron | 50.0% |
| TTCTTCCACCTCAGCCCAAA+AGG | + | chr6_4:22490769-22490788 | None:intergenic | 50.0% | |
| AGGTGGAAGAACTTTGCAGC+TGG | - | chr6_4:22490778-22490797 | Msa0982780:intron | 50.0% | |
| AGTAAAGAGAGCGGAGATGC+AGG | + | chr6_4:22490970-22490989 | None:intergenic | 50.0% | |
| ACCACAAAGCCAACTCGTGT+GGG | + | chr6_4:22491025-22491044 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGCTTTGTGGTGT+CGG | - | chr6_4:22491027-22491046 | Msa0982780:intron | 50.0% |
| ! | GTCCATACAGGGATTTGCTC+TGG | - | chr6_4:22491121-22491140 | Msa0982780:intron | 50.0% |
| AGCCAGAGCAAATCCCTGTA+TGG | + | chr6_4:22491126-22491145 | None:intergenic | 50.0% | |
| ! | GCACTCTTCAGGGGCTGTTT+TGG | - | chr6_4:22489099-22489118 | Msa0982780:intron | 55.0% |
| GACCAGTCCAAGGCTATCCA+GGG | + | chr6_4:22489827-22489846 | None:intergenic | 55.0% | |
| TGACCAGTCCAAGGCTATCC+AGG | + | chr6_4:22489828-22489847 | None:intergenic | 55.0% | |
| CGTCCCAAGCATGAGGGATT+TGG | - | chr6_4:22490371-22490390 | Msa0982780:intron | 55.0% | |
| ! | GCTGGTGCTTGCAGGAGTAT+GGG | - | chr6_4:22490494-22490513 | Msa0982780:intron | 55.0% |
| !! | ACCCACACGAGTTGGCTTTG+TGG | - | chr6_4:22491021-22491040 | Msa0982780:intron | 55.0% |
| CACCACAAAGCCAACTCGTG+TGG | + | chr6_4:22491026-22491045 | None:intergenic | 55.0% | |
| !! | TTGGCTTTGTGGTGTCGGCT+TGG | - | chr6_4:22491032-22491051 | Msa0982780:intron | 55.0% |
| !! | TGGCTTTGTGGTGTCGGCTT+GGG | - | chr6_4:22491033-22491052 | Msa0982780:intron | 55.0% |
| AGAAGGTTCCCCACTAGCGA+GGG | + | chr6_4:22491160-22491179 | None:intergenic | 55.0% | |
| ATCCAGGGCGGCTGCAATGT+CGG | + | chr6_4:22489812-22489831 | None:intergenic | 60.0% | |
| CAGTCCAAGGCTATCCAGGG+CGG | + | chr6_4:22489824-22489843 | None:intergenic | 60.0% | |
| CTAACTCGCCAGCTGCTCGA+AGG | + | chr6_4:22490296-22490315 | None:intergenic | 60.0% | |
| AGAAGGCCGTCCCAAGCATG+AGG | - | chr6_4:22490364-22490383 | Msa0982780:intron | 60.0% | |
| GAAGGCCGTCCCAAGCATGA+GGG | - | chr6_4:22490365-22490384 | Msa0982780:intron | 60.0% | |
| GTGAAGAGGCTGGTGCTTGC+AGG | - | chr6_4:22490486-22490505 | Msa0982780:intron | 60.0% | |
| GGCTGGTGCTTGCAGGAGTA+TGG | - | chr6_4:22490493-22490512 | Msa0982780:intron | 60.0% | |
| TAAATGGCCCCCCTCGCTAG+TGG | - | chr6_4:22491147-22491166 | Msa0982780:intron | 60.0% | |
| AAATGGCCCCCCTCGCTAGT+GGG | - | chr6_4:22491148-22491167 | Msa0982780:intron | 60.0% | |
| AAGGTTCCCCACTAGCGAGG+GGG | + | chr6_4:22491158-22491177 | None:intergenic | 60.0% | |
| GAAGGTTCCCCACTAGCGAG+GGG | + | chr6_4:22491159-22491178 | None:intergenic | 60.0% | |
| GAGAAGGTTCCCCACTAGCG+AGG | + | chr6_4:22491161-22491180 | None:intergenic | 60.0% | |
| TACCGACATTGCAGCCGCCC+TGG | - | chr6_4:22489807-22489826 | Msa0982780:CDS | 65.0% | |
| ! | CGCCCTGGATAGCCTTGGAC+TGG | - | chr6_4:22489822-22489841 | Msa0982780:CDS | 65.0% |
| CGACTGTGCCTTCGAGCAGC+TGG | - | chr6_4:22490285-22490304 | Msa0982780:intron | 65.0% | |
| AATGGCCCCCCTCGCTAGTG+GGG | - | chr6_4:22491149-22491168 | Msa0982780:intron | 65.0% | |
| AGGTTCCCCACTAGCGAGGG+GGG | + | chr6_4:22491157-22491176 | None:intergenic | 65.0% | |
| GCAGCCGCCCTGGATAGCCT+TGG | - | chr6_4:22489817-22489836 | Msa0982780:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 22487759 | 22491576 | 22487759 | ID=Msa0982780;Name=Msa0982780 |
| chr6_4 | mRNA | 22487759 | 22491576 | 22487759 | ID=Msa0982780-mRNA-1;Parent=Msa0982780;Name=Msa0982780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=17|1|1|1|1|1|3|575|628 |
| chr6_4 | exon | 22487759 | 22489062 | 22487759 | ID=Msa0982780-mRNA-1:exon:7193;Parent=Msa0982780-mRNA-1 |
| chr6_4 | exon | 22489492 | 22490280 | 22489492 | ID=Msa0982780-mRNA-1:exon:7192;Parent=Msa0982780-mRNA-1 |
| chr6_4 | exon | 22491191 | 22491576 | 22491191 | ID=Msa0982780-mRNA-1:exon:7191;Parent=Msa0982780-mRNA-1 |
| chr6_4 | five_prime_UTR | 22491560 | 22491576 | 22491560 | ID=Msa0982780-mRNA-1:five_prime_utr;Parent=Msa0982780-mRNA-1 |
| chr6_4 | CDS | 22491191 | 22491559 | 22491191 | ID=Msa0982780-mRNA-1:cds;Parent=Msa0982780-mRNA-1 |
| chr6_4 | CDS | 22489492 | 22490280 | 22489492 | ID=Msa0982780-mRNA-1:cds;Parent=Msa0982780-mRNA-1 |
| chr6_4 | CDS | 22488334 | 22489062 | 22488334 | ID=Msa0982780-mRNA-1:cds;Parent=Msa0982780-mRNA-1 |
| chr6_4 | three_prime_UTR | 22487759 | 22488333 | 22487759 | ID=Msa0982780-mRNA-1:three_prime_utr;Parent=Msa0982780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
