AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0800470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800470 MtrunA17_Chr5g0406041 99.667 901 3 0 1 901 1 901 0.0 1862
Msa0800470 MtrunA17_Chr4g0024571 85.173 897 132 1 1 897 82 977 0.0 1617
Msa0800470 MtrunA17_Chr2g0322641 84.710 896 136 1 2 897 83 977 0.0 1607
Msa0800470 MtrunA17_Chr1g0187311 69.697 594 161 1 304 897 1 575 0.0 880
Msa0800470 MtrunA17_Chr1g0187301 81.053 285 54 0 1 285 4 288 9.31e-165 481
Msa0800470 MtrunA17_Chr2g0310051 78.723 235 44 1 337 571 1 229 2.85e-126 381
Msa0800470 MtrunA17_Chr2g0310071 91.919 198 16 0 90 287 1 198 1.11e-122 370
Msa0800470 MtrunA17_Chr2g0310041 76.316 152 31 1 747 898 33 179 2.97e-77 249
Msa0800470 MtrunA17_Chr4g0037511 75.926 54 13 0 703 756 2 55 3.80e-21 87.8
Msa0800470 MtrunA17_Chr4g0064441 65.957 47 16 0 613 659 1 47 1.22e-15 72.0
Msa0800470 MtrunA17_Chr1g0168711 24.694 409 212 16 184 572 166 498 5.58e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800470 AT4G35830.1 87.848 897 108 1 1 897 1 896 0.0 1656
Msa0800470 AT2G05710.1 86.607 896 119 1 1 896 93 987 0.0 1637
Msa0800470 AT4G26970.1 78.906 896 188 1 1 896 98 992 0.0 1502
Msa0800470 AT4G35830.2 88.146 793 94 0 105 897 1 793 0.0 1474
Msa0800470 AT5G54950.1 69.355 62 19 0 822 883 1 62 7.04e-24 96.3
Msa0800470 AT4G13430.1 24.242 396 228 13 184 571 170 501 1.32e-13 75.1

Find 298 sgRNAs with CRISPR-Local

Find 569 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAATAAAGTTGGGTTTA+AGG 0.133655 5_3:+13852348 Msa0800470:CDS
TCAATCTCAATCTCTTACTA+TGG 0.193366 5_3:+13849649 Msa0800470:exon
ATGATCTCCTTGAAGAAATA+AGG 0.220371 5_3:+13856945 Msa0800470:three_prime_UTR
GGGGCACGATACAATTATTT+TGG 0.225658 5_3:+13855884 Msa0800470:CDS
CCAGGTGGTGGAGGTGAATT+TGG 0.239034 5_3:+13849853 Msa0800470:CDS
GCATCTGCAATTACTGAAAA+TGG 0.246895 5_3:+13854572 Msa0800470:CDS
ATTGATGGCTTGGGTGTTGC+TGG 0.251506 5_3:+13850944 Msa0800470:CDS
CATCTTATTAGCTCGTAAAT+AGG 0.268189 5_3:-13851619 None:intergenic
GAGGATTCACCGTAGTAATT+TGG 0.270564 5_3:+13856087 Msa0800470:CDS
TTCTTCACTCCATGGGAGCC+TGG 0.272887 5_3:-13855226 None:intergenic
AATGGAATCTCCACCTGTTT+AGG 0.275670 5_3:-13850127 None:intergenic
AAAACTATACATGTTCCTTC+TGG 0.279032 5_3:+13855478 Msa0800470:CDS
TTACTCAATAAGGATACTTT+TGG 0.292180 5_3:+13850024 Msa0800470:CDS
TGTCATTGATCACTCTGTTC+AGG 0.293303 5_3:+13850501 Msa0800470:CDS
AAATGCTGTTCAGGCAAATA+TGG 0.295969 5_3:+13850543 Msa0800470:CDS
AACTTTGTCTGAGATTCTTT+TGG 0.297074 5_3:-13853793 None:intergenic
GTGTGCTGCCCGATATGTTT+AGG 0.298300 5_3:+13855065 Msa0800470:CDS
GTTGCTGGGTGGGGAGTTGG+TGG 0.300734 5_3:+13850959 Msa0800470:CDS
CAAATCTTTCCTTGTTCCTC+TGG 0.301805 5_3:-13850576 None:intergenic
CAGAGGAACAAGGAAAGATT+TGG 0.304510 5_3:+13850577 Msa0800470:CDS
ATGCTCATGCCTTTAAAATA+AGG 0.305646 5_3:-13855196 None:intergenic
GAGAGTGTACTCGTCCTATT+TGG 0.306554 5_3:+13851766 Msa0800470:CDS
TTTGTTCACAATACGAATAT+TGG 0.308508 5_3:-13855431 None:intergenic
CAGCTAGGGTTTAATATAGT+TGG 0.309013 5_3:+13854497 Msa0800470:CDS
ATTCCTTTGTGTTTCAAGTC+TGG 0.310093 5_3:+13856124 Msa0800470:CDS
ACATATTATTTACAACTTCC+TGG 0.310625 5_3:-13856921 None:intergenic
TTTACATTCTAGTGAATATC+AGG 0.313518 5_3:+13856709 Msa0800470:three_prime_UTR
AGCATGTGATTTGGGATTGC+AGG 0.315702 5_3:+13853945 Msa0800470:CDS
ACAAGTCTTGCTCCAGGTTC+TGG 0.321504 5_3:+13854328 Msa0800470:CDS
GGTGTTGCTGGGTGGGGAGT+TGG 0.325408 5_3:+13850956 Msa0800470:CDS
AGGTAGTTAGCCCTCGTTAA+TGG 0.326277 5_3:-13854724 None:intergenic
GCCGGCTAGGGTGCTTCTTC+AGG 0.328032 5_3:+13850153 Msa0800470:CDS
CAAAACCCCTTATTTCTTCA+AGG 0.330526 5_3:-13856952 None:intergenic
CAGCTGTATTGTCTGGAAAT+AGG 0.332651 5_3:+13854680 Msa0800470:CDS
AAAGATTTGGTTTCCTCAAA+TGG 0.333134 5_3:+13850590 Msa0800470:CDS
GCAAAGAAAGCATGTGATTT+GGG 0.336190 5_3:+13853937 Msa0800470:CDS
GTGGTTGGGTTCAAATTATT+AGG 0.338709 5_3:+13851164 Msa0800470:CDS
TAGGTCCAACTTCTCCATTT+AGG 0.347518 5_3:-13855456 None:intergenic
GGCTTGGGTGTTGCTGGGTG+GGG 0.348488 5_3:+13850950 Msa0800470:CDS
TGGCTTGGGTGTTGCTGGGT+GGG 0.352060 5_3:+13850949 Msa0800470:CDS
GTTGTTGCCTATGCCCTTGC+CGG 0.354689 5_3:+13854763 Msa0800470:CDS
CTTGTTGTTCCTCCTGGATC+AGG 0.355369 5_3:+13850637 Msa0800470:CDS
TGAGTGTATTAATCAGATTA+AGG 0.358443 5_3:-13856864 None:intergenic
ATATGTTTCCCTAAACATAT+CGG 0.363669 5_3:-13855074 None:intergenic
CTGACCAAGCATTGCAGCTT+CGG 0.371960 5_3:-13850990 None:intergenic
GCAAACATGTCTCCTGAGTA+TGG 0.374893 5_3:+13851436 Msa0800470:CDS
ATGCACTTCCTTACTCAATA+AGG 0.375893 5_3:+13850014 Msa0800470:CDS
GAAGAATACTTCTCCTAAAC+AGG 0.377938 5_3:+13850114 Msa0800470:CDS
TTCCTTTGTGTTTCAAGTCT+GGG 0.379769 5_3:+13856125 Msa0800470:CDS
TCTTCACTCCATGGGAGCCT+GGG 0.379934 5_3:-13855225 None:intergenic
GTCTTCAATATGTTGTTGAA+TGG 0.380662 5_3:-13849820 None:intergenic
AAAAGTATCCTTATTGAGTA+AGG 0.383661 5_3:-13850022 None:intergenic
GCTTACTGTTTGCTCAACTT+TGG 0.384031 5_3:+13855250 Msa0800470:CDS
TCACACACAACTATGATTGA+TGG 0.385745 5_3:+13850929 Msa0800470:CDS
ATTGTGAACAAATTCCTAAA+TGG 0.386552 5_3:+13855442 Msa0800470:CDS
AATAATAAGAGAAGAATAGT+AGG 0.387036 5_3:-13849582 None:intergenic
CATCTGGCAATCTTTATGCC+TGG 0.388567 5_3:+13855143 Msa0800470:CDS
CTCTATCCTGACAGCGTTGT+CGG 0.388828 5_3:+13850899 Msa0800470:CDS
ATTTGAGGTATTTGTACAAC+TGG 0.392791 5_3:-13853884 None:intergenic
CCCACGTTCTGTAAGGTATC+TGG 0.394521 5_3:-13855335 None:intergenic
CCGTAGTAATTTGGTGGGAA+TGG 0.395867 5_3:+13856096 Msa0800470:CDS
TGCAAAGAAAGCATGTGATT+TGG 0.398273 5_3:+13853936 Msa0800470:CDS
ATACCTCTGTATCAAATCTC+AGG 0.400941 5_3:-13856279 None:intergenic
CACAACTATGATTGATGGCT+TGG 0.400977 5_3:+13850934 Msa0800470:CDS
ACTACGTGCATTGGAAATTC+AGG 0.404162 5_3:+13854530 Msa0800470:CDS
ATCTGGCAATCTTTATGCCT+GGG 0.404692 5_3:+13855144 Msa0800470:CDS
AACATGCTTGTTGTTCCTCC+TGG 0.410773 5_3:+13850631 Msa0800470:CDS
CGAATTTCATTCACACTGCT+TGG 0.411985 5_3:-13856202 None:intergenic
GGAGTGGAAGTTCTCGTGAT+TGG 0.412339 5_3:+13855922 Msa0800470:CDS
AAGATTTGGTTTCCTCAAAT+GGG 0.413501 5_3:+13850591 Msa0800470:CDS
TTCAAGATTGAGCTCCAAAT+AGG 0.421242 5_3:-13851780 None:intergenic
GCATGCGAGATGCGATGAAC+AGG 0.422956 5_3:+13850328 Msa0800470:CDS
TCGGTTCCGACAACGCTGTC+AGG 0.424031 5_3:-13850905 None:intergenic
TACATCTGCTATTTCTTCGC+TGG 0.424470 5_3:-13854939 None:intergenic
AAACTATACATGTTCCTTCT+GGG 0.426329 5_3:+13855479 Msa0800470:CDS
AGCTAGGGTTTAATATAGTT+GGG 0.429612 5_3:+13854498 Msa0800470:CDS
TTAAGAAAGCATGGGGTTGT+TGG 0.430652 5_3:+13851242 Msa0800470:CDS
TGTGCTGCCCGATATGTTTA+GGG 0.431450 5_3:+13855066 Msa0800470:CDS
GAACTTGCTTACTTCAATCA+TGG 0.432022 5_3:+13856418 Msa0800470:CDS
TGATCTCCTTGAAGAAATAA+GGG 0.433638 5_3:+13856946 Msa0800470:three_prime_UTR
CCCAACTTTATTGTTGAGGC+AGG 0.433970 5_3:-13852341 None:intergenic
GCCTGCCTCAACAATAAAGT+TGG 0.434707 5_3:+13852340 Msa0800470:CDS
CGTAGTAATTTGGTGGGAAT+GGG 0.436188 5_3:+13856097 Msa0800470:CDS
ATTCCACATAGGGTTGCCTT+TGG 0.437022 5_3:-13855107 None:intergenic
AGGCATGAGTGAACTACCTT+TGG 0.438062 5_3:+13851396 Msa0800470:CDS
ATGGTCCTACCTGGTGTGGT+TGG 0.441600 5_3:+13851149 Msa0800470:CDS
GTAGCTGCAGCTGTATTGTC+TGG 0.442226 5_3:+13854673 Msa0800470:CDS
ACGAGCTAATAAGATGTTTG+TGG 0.443131 5_3:+13851626 Msa0800470:CDS
CATATTATTTACAACTTCCT+GGG 0.444172 5_3:-13856920 None:intergenic
TGTAATGCTTGGAGCTGCCT+TGG 0.447259 5_3:+13853912 Msa0800470:CDS
CCATCCTTCGCAATCCCAAT+GGG 0.453140 5_3:-13854884 None:intergenic
AACCCTAGCTGATTCAAATA+CGG 0.453334 5_3:-13854485 None:intergenic
GGGGAAGATGCCGATACTCT+TGG 0.453839 5_3:+13856145 Msa0800470:CDS
TTGTCTAAATAATGTGGAAT+GGG 0.455124 5_3:+13856499 Msa0800470:three_prime_UTR
GTCTGGAAATAGGAACTTTG+AGG 0.458379 5_3:+13854690 Msa0800470:CDS
CTCCCACATTGAAAGGACCT+TGG 0.458551 5_3:-13856526 None:intergenic
AGCACCCTAGCCGGCTTGAA+TGG 0.460936 5_3:-13850145 None:intergenic
TTCTCGTGATTGGGCTGCAA+AGG 0.461921 5_3:+13855932 Msa0800470:CDS
ACTTTGACACCGAGCCCATT+GGG 0.462079 5_3:+13854870 Msa0800470:CDS
AAGCATTACACTAGGATTTG+AGG 0.462114 5_3:-13853899 None:intergenic
TGAAAGAAATGAAAGCAGAT+TGG 0.464865 5_3:+13852314 Msa0800470:CDS
AAGATCAGAAAATGCTGTTC+AGG 0.465390 5_3:+13850534 Msa0800470:CDS
TATCGACCCCACGTTCTGTA+AGG 0.465586 5_3:-13855342 None:intergenic
AATAGTTTATCTGTTCCATC+TGG 0.468632 5_3:+13855127 Msa0800470:CDS
CATGTGTCTCAGGTCCAAAA+AGG 0.469045 5_3:+13851813 Msa0800470:CDS
TTGATGGCTTGGGTGTTGCT+GGG 0.470451 5_3:+13850945 Msa0800470:CDS
GGGTTTAATATAGTTGGGTA+TGG 0.470647 5_3:+13854503 Msa0800470:CDS
ACGCATTTGAACCCCATTTG+AGG 0.471908 5_3:-13850603 None:intergenic
AATAGTAGGTAGGTGAGAAA+AGG 0.472115 5_3:-13849568 None:intergenic
CCCATGAGCATGGTCCTACC+TGG 0.474320 5_3:+13851140 Msa0800470:CDS
CCAAATTCACCTCCACCACC+TGG 0.475701 5_3:-13849853 None:intergenic
CGAAGCTGCAATGCTTGGTC+AGG 0.475721 5_3:+13850991 Msa0800470:CDS
GGAACTCAGGTGGAGGGTCG+TGG 0.476162 5_3:+13856588 Msa0800470:three_prime_UTR
TGTGTCATGTTGCCCATCCC+AGG 0.477460 5_3:+13856903 Msa0800470:three_prime_UTR
TCCAGCTGGCAGCATACATA+AGG 0.477487 5_3:+13855300 Msa0800470:CDS
AGACGAGACTTCAACTCCTA+TGG 0.478558 5_3:+13855364 Msa0800470:CDS
AAATTCCTAAATGGAGAAGT+TGG 0.480723 5_3:+13855451 Msa0800470:CDS
TGGTCCTACCTGGTGTGGTT+GGG 0.483325 5_3:+13851150 Msa0800470:CDS
TCTGTTTACGAGAATAAAAG+TGG 0.487519 5_3:+13856659 Msa0800470:three_prime_UTR
TCCATCCTTCGCAATCCCAA+TGG 0.488367 5_3:-13854885 None:intergenic
TATGTTTCCCTAAACATATC+GGG 0.489007 5_3:-13855073 None:intergenic
GCCGATACTCTTGGATTGAC+CGG 0.489079 5_3:+13856154 Msa0800470:CDS
TTCTAATAAAATTAACCCAT+TGG 0.490438 5_3:+13850362 Msa0800470:CDS
TGGATCAGGAATAGTCCATC+AGG 0.491915 5_3:+13850651 Msa0800470:CDS
CCTGCCTCAACAATAAAGTT+GGG 0.492185 5_3:+13852341 Msa0800470:CDS
GAGTGGAAGTTCTCGTGATT+GGG 0.492557 5_3:+13855923 Msa0800470:CDS
ATTGTCTAAATAATGTGGAA+TGG 0.493357 5_3:+13856498 Msa0800470:three_prime_UTR
GAGTGTATTAATCAGATTAA+GGG 0.493658 5_3:-13856863 None:intergenic
TCCTTTGCAGCCCATGAGCA+TGG 0.493875 5_3:+13851130 Msa0800470:intron
ACTCAAATGTTAAGAAAGCA+TGG 0.494752 5_3:+13851233 Msa0800470:CDS
GATGTTGAACCATGTGTCTC+AGG 0.495039 5_3:+13851803 Msa0800470:CDS
CCCATTGGGATTGCGAAGGA+TGG 0.496797 5_3:+13854884 Msa0800470:CDS
GCTCTCAACGATTCTAGAAT+CGG 0.500465 5_3:+13849895 Msa0800470:CDS
TGATGGACTATTCCTGATCC+AGG 0.502386 5_3:-13850649 None:intergenic
TCCTTATGTATGCTGCCAGC+TGG 0.503865 5_3:-13855301 None:intergenic
ATGGCTTGGGTGTTGCTGGG+TGG 0.505414 5_3:+13850948 Msa0800470:CDS
TCAAATCCTAGTGTAATGCT+TGG 0.505454 5_3:+13853901 Msa0800470:CDS
TATTTACAACTTCCTGGGAT+GGG 0.505736 5_3:-13856915 None:intergenic
GACTTTGACACCGAGCCCAT+TGG 0.505960 5_3:+13854869 Msa0800470:CDS
AATCATAGTTGTGTGTGAAT+CGG 0.506400 5_3:-13850924 None:intergenic
ATTTAATTTACGTACTGTGC+CGG 0.506788 5_3:-13854782 None:intergenic
CTTCGCAATCCCAATGGGCT+CGG 0.507585 5_3:-13854879 None:intergenic
CACACTGCTTGGAAGATCAA+TGG 0.510118 5_3:-13856191 None:intergenic
CAACCGTATTTGAATCAGCT+AGG 0.510360 5_3:+13854482 Msa0800470:CDS
CTTCACTCCATGGGAGCCTG+GGG 0.512381 5_3:-13855224 None:intergenic
TCTGGAAATAGGAACTTTGA+GGG 0.512718 5_3:+13854691 Msa0800470:CDS
TCTGCTATTTCTTCGCTGGA+TGG 0.513789 5_3:-13854935 None:intergenic
ATCAATAAACTAAGGAACTC+AGG 0.515027 5_3:+13856575 Msa0800470:three_prime_UTR
TTACTAAGTATTTGCAGAAG+AGG 0.517241 5_3:+13854356 Msa0800470:CDS
CTCAAATGTTAAGAAAGCAT+GGG 0.517291 5_3:+13851234 Msa0800470:CDS
GAATTTCCTCCCACATTGAA+AGG 0.517662 5_3:-13856533 None:intergenic
ATAAGAGAAGAATAGTAGGT+AGG 0.519765 5_3:-13849578 None:intergenic
TTATTTACAACTTCCTGGGA+TGG 0.521601 5_3:-13856916 None:intergenic
ATTGCCACGGCGACTTCCAT+AGG 0.522841 5_3:-13855380 None:intergenic
TGATCAATGACAAGATCAAC+CGG 0.524105 5_3:-13850490 None:intergenic
AGGAGACATGTTTGCTATGG+TGG 0.524275 5_3:-13851428 None:intergenic
AGATTCCATTCAAGCCGGCT+AGG 0.525137 5_3:+13850140 Msa0800470:CDS
CAGGTCAATTTAGAATACCT+TGG 0.526810 5_3:+13850848 Msa0800470:intron
AGCATTGATCAAGTTTCTGA+TGG 0.527691 5_3:-13856458 None:intergenic
ACCAGGTAGGACCATGCTCA+TGG 0.528438 5_3:-13851141 None:intergenic
TTCAGTAATTGCAGATGCAA+CGG 0.528669 5_3:-13854567 None:intergenic
GTTCATCGCATCTCGCATGC+AGG 0.529504 5_3:-13850325 None:intergenic
TTGGAAAAGCCAGGTGGTGG+AGG 0.529651 5_3:+13849844 Msa0800470:CDS
CAAGGAATTACCAGTAGCAT+TGG 0.529804 5_3:-13855957 None:intergenic
GATTCACCGTAGTAATTTGG+TGG 0.530322 5_3:+13856090 Msa0800470:CDS
CACCAGCAAAACTTAAGCAT+GGG 0.530496 5_3:+13853839 Msa0800470:CDS
TTAACATTGTCTAAATAATG+TGG 0.531028 5_3:+13856493 Msa0800470:three_prime_UTR
TTACCAAAGGCAACCCTATG+TGG 0.531734 5_3:+13855104 Msa0800470:CDS
ATCACGGTGGTGACAGACAA+TGG 0.533403 5_3:+13856238 Msa0800470:CDS
TCTCGTGATTGGGCTGCAAA+GGG 0.534225 5_3:+13855933 Msa0800470:CDS
CAATCTCAATCTCTTACTAT+GGG 0.535834 5_3:+13849650 Msa0800470:exon
TATGGATGCACTACGTGCAT+TGG 0.538023 5_3:+13854521 Msa0800470:CDS
GATTCCATTCAAGCCGGCTA+GGG 0.539534 5_3:+13850141 Msa0800470:CDS
CTACGTGCATTGGAAATTCA+GGG 0.539698 5_3:+13854531 Msa0800470:CDS
ACGTTGGAAAAGCCAGGTGG+TGG 0.540808 5_3:+13849841 Msa0800470:CDS
AGTAAGCATTCTTCACTCCA+TGG 0.541383 5_3:-13855234 None:intergenic
CCTGAGTATGGTGCAACCAT+GGG 0.541499 5_3:+13851448 Msa0800470:CDS
TGTCAGAAATACAAGAGTGA+GGG 0.542842 5_3:+13855864 Msa0800470:intron
CGAGTACACTCTCTCCACTT+GGG 0.543253 5_3:-13851756 None:intergenic
TCACGGTGGTGACAGACAAT+GGG 0.543646 5_3:+13856239 Msa0800470:CDS
CAACGAGAGGAGGAGAAGCT+AGG 0.543894 5_3:-13854744 None:intergenic
AACCGTATTTGAATCAGCTA+GGG 0.544435 5_3:+13854483 Msa0800470:CDS
TGCAAAGGGACCAATGCTAC+TGG 0.546307 5_3:+13855947 Msa0800470:CDS
CAGATAAACTATTCCACATA+GGG 0.547368 5_3:-13855117 None:intergenic
AATATTTGAAACTGACCGGC+AGG 0.549997 5_3:+13851500 Msa0800470:CDS
TTGAAGACGTTGGAAAAGCC+AGG 0.550050 5_3:+13849835 Msa0800470:CDS
TTGCAATATTTGAAACTGAC+CGG 0.550545 5_3:+13851496 Msa0800470:CDS
TAAACTATTAGGTGAAGCCA+TGG 0.550892 5_3:+13854299 Msa0800470:intron
TCTGTAAGGTATCTGGCTGC+AGG 0.551655 5_3:-13855328 None:intergenic
TTGTACTGAGGAGCGTTGAA+AGG 0.551857 5_3:+13856767 Msa0800470:three_prime_UTR
ATAAGTTGATGTAGAGTCCC+AGG 0.552294 5_3:-13855161 None:intergenic
TTTACGTACTGTGCCGGCAA+GGG 0.553925 5_3:-13854776 None:intergenic
CTATTTATATCAATAAACTA+AGG 0.554096 5_3:+13856567 Msa0800470:three_prime_UTR
GAAGCCGAAGCTGCAATGCT+TGG 0.554186 5_3:+13850986 Msa0800470:CDS
ATGTTGAAAAGATTATTGAT+TGG 0.554826 5_3:+13850092 Msa0800470:CDS
CAGGCAAGGTCAACAACAGC+AGG 0.555071 5_3:-13850306 None:intergenic
TACTGTGCCGGCAAGGGCAT+AGG 0.555653 5_3:-13854770 None:intergenic
TCCTTTGTGTTTCAAGTCTG+GGG 0.556949 5_3:+13856126 Msa0800470:CDS
AAACTAAGGAACTCAGGTGG+AGG 0.557540 5_3:+13856581 Msa0800470:three_prime_UTR
CTCAGGAGACATGTTTGCTA+TGG 0.557582 5_3:-13851431 None:intergenic
ACCGGTCAATCCAAGAGTAT+CGG 0.559771 5_3:-13856155 None:intergenic
ACGAGTACACTCTCTCCACT+TGG 0.562333 5_3:-13851757 None:intergenic
AGAGTTGTGTTCAACACAAA+TGG 0.563493 5_3:+13850872 Msa0800470:CDS
CCCATGGTTGCACCATACTC+AGG 0.564301 5_3:-13851448 None:intergenic
ATTTACGTACTGTGCCGGCA+AGG 0.564724 5_3:-13854777 None:intergenic
ATCAAAACAAGTCTTGCTCC+AGG 0.567350 5_3:+13854322 Msa0800470:CDS
TACAGTTTCATCACTCCTGC+CGG 0.568564 5_3:-13851515 None:intergenic
ACAACTATGATTGATGGCTT+GGG 0.571543 5_3:+13850935 Msa0800470:CDS
ACCTGAAGAAGCACCCTAGC+CGG 0.572149 5_3:-13850154 None:intergenic
ACAGATAAACTATTCCACAT+AGG 0.575613 5_3:-13855118 None:intergenic
CCCTCGTTAATGGATGAACT+CGG 0.576207 5_3:-13854714 None:intergenic
TAAACCCAACTTTATTGTTG+AGG 0.579324 5_3:-13852345 None:intergenic
TCCTGAGTATGGTGCAACCA+TGG 0.580788 5_3:+13851447 Msa0800470:CDS
CAACAACATATTGAAGACGT+TGG 0.580874 5_3:+13849825 Msa0800470:CDS
CATGACACATCTGCTATGCT+AGG 0.582144 5_3:-13856889 None:intergenic
ACATATAATGCTATTACCAA+AGG 0.582871 5_3:+13855091 Msa0800470:CDS
ACTGATAACTTCTCCCCAGA+AGG 0.585751 5_3:-13855493 None:intergenic
AGCCAAGGTCCTTTCAATGT+GGG 0.586632 5_3:+13856524 Msa0800470:three_prime_UTR
AATGGTGTAACGTTCATGAC+CGG 0.587845 5_3:-13856173 None:intergenic
TGCAAAGTGACATGATCCAC+GGG 0.593519 5_3:-13851478 None:intergenic
ACACCAGCAAAACTTAAGCA+TGG 0.595168 5_3:+13853838 Msa0800470:CDS
ACTGACCACATCTCTCCAGC+TGG 0.596487 5_3:+13855286 Msa0800470:CDS
TTAGTAACTACACCAGAACC+TGG 0.597654 5_3:-13854340 None:intergenic
CTCATGCCTTTAAAATAAGG+TGG 0.600089 5_3:-13855193 None:intergenic
GTAAGCATTCTTCACTCCAT+GGG 0.600608 5_3:-13855233 None:intergenic
CGAGATGCGATGAACAGGCT+TGG 0.600984 5_3:+13850333 Msa0800470:CDS
GCCAGATACCTTACAGAACG+TGG 0.602603 5_3:+13855334 Msa0800470:CDS
TTGCAAAGTGACATGATCCA+CGG 0.602915 5_3:-13851479 None:intergenic
GCATAGGCAACAACGAGAGG+AGG 0.603075 5_3:-13854754 None:intergenic
AGATTTGGTTTCCTCAAATG+GGG 0.603282 5_3:+13850592 Msa0800470:CDS
CCGTGGCAATGATGAGGTGA+TGG 0.604493 5_3:+13855393 Msa0800470:CDS
TCGCATCTCGCATGCAGGCA+AGG 0.605350 5_3:-13850320 None:intergenic
GAGTACACTCTCTCCACTTG+GGG 0.605692 5_3:-13851755 None:intergenic
GCTGGTGCAGAGTATGGGAG+TGG 0.608387 5_3:+13855906 Msa0800470:CDS
CCAGGTAGGACCATGCTCAT+GGG 0.610079 5_3:-13851140 None:intergenic
AACTAAGGAACTCAGGTGGA+GGG 0.610129 5_3:+13856582 Msa0800470:three_prime_UTR
AGGGCATAGGCAACAACGAG+AGG 0.611221 5_3:-13854757 None:intergenic
ATTCACCGTAGTAATTTGGT+GGG 0.612191 5_3:+13856091 Msa0800470:CDS
GATGCGATGAACAGGCTTGG+TGG 0.613212 5_3:+13850336 Msa0800470:CDS
TGTTGCATTGCAGCCCCAAG+TGG 0.613560 5_3:+13851742 Msa0800470:intron
ACATGCTTTCTTTGCAACCA+AGG 0.613644 5_3:-13853929 None:intergenic
CCATTCCCACCAAATTACTA+CGG 0.614199 5_3:-13856096 None:intergenic
TGGTGTCACAGCTACCGACT+TGG 0.615205 5_3:+13851199 Msa0800470:CDS
GAATACTTCTCCTAAACAGG+TGG 0.615442 5_3:+13850117 Msa0800470:CDS
AACTATACATGTTCCTTCTG+GGG 0.616489 5_3:+13855480 Msa0800470:CDS
AACCATGGGATTCTTTCCCG+TGG 0.617106 5_3:+13851462 Msa0800470:CDS
AATTTGAACCCAACCACACC+AGG 0.617532 5_3:-13851158 None:intergenic
GATCTCCTTGAAGAAATAAG+GGG 0.618717 5_3:+13856947 Msa0800470:three_prime_UTR
TTCAAAGTAACACGGTCATG+AGG 0.622209 5_3:-13852295 None:intergenic
GGTGGAGATTCCATTCAAGC+CGG 0.622548 5_3:+13850135 Msa0800470:CDS
TTGTCAGAAATACAAGAGTG+AGG 0.622999 5_3:+13855863 Msa0800470:intron
ACTTGAATTCCAGAGGAACA+AGG 0.623220 5_3:+13850567 Msa0800470:CDS
CCATCACCTCATCATTGCCA+CGG 0.625198 5_3:-13855393 None:intergenic
AATGTGGAATGGGTCAGCCA+AGG 0.627330 5_3:+13856509 Msa0800470:three_prime_UTR
CAGCCAAGGTCCTTTCAATG+TGG 0.627779 5_3:+13856523 Msa0800470:three_prime_UTR
TCAAATGTTAAGAAAGCATG+GGG 0.629808 5_3:+13851235 Msa0800470:CDS
TACCTCTGTATCAAATCTCA+GGG 0.631164 5_3:-13856278 None:intergenic
TCGACCTGGTCAAGATATCA+CGG 0.632288 5_3:+13856222 Msa0800470:CDS
ACGTAGCTACAAGAAAGCCC+AGG 0.632995 5_3:-13856812 None:intergenic
AACTCCTATGGAAGTCGCCG+TGG 0.634766 5_3:+13855376 Msa0800470:CDS
CGAGCCCATTGGGATTGCGA+AGG 0.635287 5_3:+13854880 Msa0800470:CDS
CCAGATACCTTACAGAACGT+GGG 0.637037 5_3:+13855335 Msa0800470:CDS
GAGCATGGTCCTACCTGGTG+TGG 0.638344 5_3:+13851145 Msa0800470:CDS
TCATTTCTTTCAAAGTAACA+CGG 0.643277 5_3:-13852303 None:intergenic
CAAGGTCCTTTCAATGTGGG+AGG 0.646053 5_3:+13856527 Msa0800470:three_prime_UTR
GCAGCTCCAAGCATTACACT+AGG 0.646576 5_3:-13853907 None:intergenic
TCCCCAGACTTGAAACACAA+AGG 0.647032 5_3:-13856127 None:intergenic
GTCAGAAATACAAGAGTGAG+GGG 0.648014 5_3:+13855865 Msa0800470:intron
ATGGTGGCACGATCAGCCAA+AGG 0.648173 5_3:-13851412 None:intergenic
AATGATGAGGTGATGGCAAG+AGG 0.654631 5_3:+13855400 Msa0800470:CDS
ATATGGAACTTGAATTCCAG+AGG 0.657342 5_3:+13850560 Msa0800470:CDS
TACCCTGAGATTTGATACAG+AGG 0.662454 5_3:+13856276 Msa0800470:CDS
AATAAACTAAGGAACTCAGG+TGG 0.663587 5_3:+13856578 Msa0800470:three_prime_UTR
GTCAACAACAGCAGGCACAC+CGG 0.664428 5_3:-13850298 None:intergenic
ACCAGCAAAACTTAAGCATG+GGG 0.665708 5_3:+13853840 Msa0800470:CDS
TGTTGAACACAACTCTACCA+AGG 0.667926 5_3:-13850865 None:intergenic
GATGTTTGTGGACTACAATG+AGG 0.668887 5_3:+13851638 Msa0800470:CDS
ACCACCGTGATATCTTGACC+AGG 0.670639 5_3:-13856226 None:intergenic
TGCTGCCAGCTGGAGAGATG+TGG 0.672724 5_3:-13855291 None:intergenic
CAGGCATAAAGATTGCCAGA+TGG 0.675748 5_3:-13855142 None:intergenic
GCCGAGTTCATCCATTAACG+AGG 0.677700 5_3:+13854713 Msa0800470:CDS
CTTGCTTACTTCAATCATGG+AGG 0.678662 5_3:+13856421 Msa0800470:CDS
TACGTGCATTGGAAATTCAG+GGG 0.678899 5_3:+13854532 Msa0800470:CDS
CCGAGTTCATCCATTAACGA+GGG 0.684574 5_3:+13854714 Msa0800470:CDS
ATCCACGGGAAAGAATCCCA+TGG 0.685318 5_3:-13851464 None:intergenic
TGAACCCAACCACACCAGGT+AGG 0.687515 5_3:-13851154 None:intergenic
CAGATACCTTACAGAACGTG+GGG 0.688556 5_3:+13855336 Msa0800470:CDS
TTATTAGGCAAACTACGAAG+TGG 0.689687 5_3:+13851179 Msa0800470:CDS
ATAAAGCATAAATTGTACTG+AGG 0.693323 5_3:+13856755 Msa0800470:three_prime_UTR
TTCACTCCATGGGAGCCTGG+GGG 0.697438 5_3:-13855223 None:intergenic
TGGACTATTCCTGATCCAGG+AGG 0.704408 5_3:-13850646 None:intergenic
AAGTCGCCGTGGCAATGATG+AGG 0.705595 5_3:+13855387 Msa0800470:CDS
AGTGTGAATGAAATTCGACC+TGG 0.706408 5_3:+13856208 Msa0800470:CDS
AGCTGGAGAGATGTGGTCAG+TGG 0.714350 5_3:-13855284 None:intergenic
AGTAACAGTCAAGACCAAGT+CGG 0.722413 5_3:-13851213 None:intergenic
GAAGTTATCAGTCTTCGATG+CGG 0.731127 5_3:+13855504 Msa0800470:CDS
AAGACGTTGGAAAAGCCAGG+TGG 0.750245 5_3:+13849838 Msa0800470:CDS
ACCTGGTCAAGATATCACGG+TGG 0.812027 5_3:+13856225 Msa0800470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATATTTTAATCTTAATAA+GGG - chr5_3:13851921-13851940 None:intergenic 10.0%
!!! ACAATATTTTAATCTTAATA+AGG - chr5_3:13851922-13851941 None:intergenic 10.0%
!! TAGAAAATAACAAATTATTA+GGG - chr5_3:13854244-13854263 None:intergenic 10.0%
!! ATTATTTCATTTAAACTATT+AGG + chr5_3:13854288-13854307 Msa0800470:intron 10.0%
!!! ATATAATTTTATTTATATGG+TGG - chr5_3:13854990-13855009 None:intergenic 10.0%
!!! TTGTTTTCTTTAATTATTAC+CGG + chr5_3:13849922-13849941 Msa0800470:intron 15.0%
!!! GTGTAATAAATTTAGAATTT+TGG + chr5_3:13850454-13850473 Msa0800470:intron 15.0%
!! TATAAAACGATTATTATCTA+AGG - chr5_3:13851358-13851377 None:intergenic 15.0%
!!! TTATTTTCCTTAATTTTAAG+TGG - chr5_3:13851858-13851877 None:intergenic 15.0%
!!! TTGTTTAATCATATATTTTG+AGG + chr5_3:13852053-13852072 Msa0800470:intron 15.0%
!!! TAAATGAAATTTTGTAAACT+TGG - chr5_3:13852689-13852708 None:intergenic 15.0%
!!! TAATATGCGATTTAAAATAT+AGG + chr5_3:13852753-13852772 Msa0800470:intron 15.0%
!!! GTATCAAATTTTAGATAATT+TGG - chr5_3:13852813-13852832 None:intergenic 15.0%
!! AGAAAATAACAAATTATTAG+GGG - chr5_3:13854243-13854262 None:intergenic 15.0%
!! GTAGAAAATAACAAATTATT+AGG - chr5_3:13854245-13854264 None:intergenic 15.0%
!! TAAAAACATAAAAGCAAAAA+AGG - chr5_3:13855623-13855642 None:intergenic 15.0%
!! CTATTTATATCAATAAACTA+AGG + chr5_3:13856567-13856586 Msa0800470:three_prime_UTR 15.0%
!! AATAATAAGAGAAGAATAGT+AGG - chr5_3:13849585-13849604 None:intergenic 20.0%
!! AGAAATGAGAAAATTAAATC+TGG - chr5_3:13849725-13849744 None:intergenic 20.0%
!!! TGTTTTCTTTAATTATTACC+GGG + chr5_3:13849923-13849942 Msa0800470:intron 20.0%
!! ATGTTGAAAAGATTATTGAT+TGG + chr5_3:13850092-13850111 Msa0800470:CDS 20.0%
!!! TGTTTTTGATTTCATTTATC+AGG + chr5_3:13850269-13850288 Msa0800470:intron 20.0%
!! TTCTAATAAAATTAACCCAT+TGG + chr5_3:13850362-13850381 Msa0800470:CDS 20.0%
!!! TTTTATATTTCCTTTATGCA+GGG + chr5_3:13851371-13851390 Msa0800470:intron 20.0%
!!! ATGTTTTCCACTTAAAATTA+AGG + chr5_3:13851848-13851867 Msa0800470:intron 20.0%
!!! ATTTTAATCTTAATAAGGGA+AGG - chr5_3:13851917-13851936 None:intergenic 20.0%
!! TACATTACAGATAATATGTA+TGG - chr5_3:13852389-13852408 None:intergenic 20.0%
!! TGTAATGCCTAAATATAAAA+TGG + chr5_3:13852405-13852424 Msa0800470:intron 20.0%
!! TATACAAATTTAAGCATCAT+GGG - chr5_3:13852449-13852468 None:intergenic 20.0%
!! ATATACAAATTTAAGCATCA+TGG - chr5_3:13852450-13852469 None:intergenic 20.0%
!! AATACAAAATCTTCCTAATT+TGG + chr5_3:13853363-13853382 Msa0800470:intron 20.0%
!! ATACAAAATCTTCCTAATTT+GGG + chr5_3:13853364-13853383 Msa0800470:intron 20.0%
!! GAAAATAACAAATTATTAGG+GGG - chr5_3:13854242-13854261 None:intergenic 20.0%
!! CAAGTAATACCATTTATAAA+AGG - chr5_3:13854605-13854624 None:intergenic 20.0%
!! TAATTTGGACATTATTATTC+AGG + chr5_3:13854838-13854857 Msa0800470:intron 20.0%
!!! ATTTTATTTATATGGTGGAA+TGG - chr5_3:13854985-13855004 None:intergenic 20.0%
!!! TTCATATTTATCCTATTTTC+AGG + chr5_3:13855030-13855049 Msa0800470:intron 20.0%
!! GCTCTTGATTAAAAAATATA+TGG - chr5_3:13855581-13855600 None:intergenic 20.0%
!! ATTGTCATATATAACATCAT+GGG + chr5_3:13855653-13855672 Msa0800470:intron 20.0%
!! AAGAATATAATGCTTGAATT+TGG + chr5_3:13855824-13855843 Msa0800470:intron 20.0%
!! TTAACATTGTCTAAATAATG+TGG + chr5_3:13856493-13856512 Msa0800470:three_prime_UTR 20.0%
!!! AAAAGTATCCTTATTGAGTA+AGG - chr5_3:13850025-13850044 None:intergenic 25.0%
!! TTACTCAATAAGGATACTTT+TGG + chr5_3:13850024-13850043 Msa0800470:CDS 25.0%
! CATTCAAGTAATTTCACAAA+AGG - chr5_3:13850233-13850252 None:intergenic 25.0%
!! TTCATTTATCAGGATTTTAC+CGG + chr5_3:13850279-13850298 Msa0800470:intron 25.0%
!!! TTAGAATTTTGGTTACTTTC+AGG + chr5_3:13850465-13850484 Msa0800470:intron 25.0%
! TCTACTAACAGGTTAATAAT+TGG - chr5_3:13851099-13851118 None:intergenic 25.0%
!!! AGATAATTGTTTCTACTAAC+AGG - chr5_3:13851110-13851129 None:intergenic 25.0%
!! GTTTTATATTTCCTTTATGC+AGG + chr5_3:13851370-13851389 Msa0800470:intron 25.0%
! TTTATATTTCCTTTATGCAG+GGG + chr5_3:13851372-13851391 Msa0800470:intron 25.0%
!! TATGCATGCATATATTGTTT+TGG + chr5_3:13851666-13851685 Msa0800470:intron 25.0%
!! ATGCATGCATATATTGTTTT+GGG + chr5_3:13851667-13851686 Msa0800470:intron 25.0%
!!! AATTTTAAGTGGAAAACATG+AGG - chr5_3:13851847-13851866 None:intergenic 25.0%
! ATTGTTACATGCAATTATCT+AGG + chr5_3:13851937-13851956 Msa0800470:intron 25.0%
! CTTAAATAAGATTTCAGAGT+TGG - chr5_3:13851986-13852005 None:intergenic 25.0%
! AAATAAAGACCACATTCATT+CGG + chr5_3:13852077-13852096 Msa0800470:intron 25.0%
! TCATTTCTTTCAAAGTAACA+CGG - chr5_3:13852306-13852325 None:intergenic 25.0%
!!! AGCTATGCCATTTTATATTT+AGG - chr5_3:13852415-13852434 None:intergenic 25.0%
! ATTCAGACATATCTATGTTT+AGG - chr5_3:13852542-13852561 None:intergenic 25.0%
! TCTCAGTTTAATGATTTGAT+TGG - chr5_3:13852651-13852670 None:intergenic 25.0%
! TAAACTTGGTATATTCATGT+GGG - chr5_3:13852675-13852694 None:intergenic 25.0%
! CATAGGTATGTAATTAATGA+TGG - chr5_3:13852785-13852804 None:intergenic 25.0%
! TAGATAATTTGGATGTTCAT+AGG - chr5_3:13852802-13852821 None:intergenic 25.0%
! ATGCAACATGATTAAAAGTT+TGG + chr5_3:13852850-13852869 Msa0800470:intron 25.0%
! AAGAAATACAAGACTTTAAG+AGG + chr5_3:13853305-13853324 Msa0800470:intron 25.0%
!! AGAAATACAAGACTTTAAGA+GGG + chr5_3:13853306-13853325 Msa0800470:intron 25.0%
! TACAAAATCTTCCTAATTTG+GGG + chr5_3:13853365-13853384 Msa0800470:intron 25.0%
! AAATACTCTTTCGAAAAATG+TGG + chr5_3:13853521-13853540 Msa0800470:intron 25.0%
! TGTAACAATGCAATACTATA+CGG - chr5_3:13853760-13853779 None:intergenic 25.0%
! TATAGTATTGCATTGTTACA+GGG + chr5_3:13853760-13853779 Msa0800470:intron 25.0%
! TCAAATACGTATTTAACTAC+TGG - chr5_3:13854187-13854206 None:intergenic 25.0%
! AGTAGTTAAATACGTATTTG+AGG + chr5_3:13854186-13854205 Msa0800470:intron 25.0%
!! TGAAGTATTTGCTCATAATA+TGG + chr5_3:13854395-13854414 Msa0800470:intron 25.0%
!! GGTACATATCCTTTTATAAA+TGG + chr5_3:13854593-13854612 Msa0800470:intron 25.0%
!! AGATTTTCTTCAGAGATATT+TGG + chr5_3:13854912-13854931 Msa0800470:CDS 25.0%
! ATATGTTTCCCTAAACATAT+CGG - chr5_3:13855077-13855096 None:intergenic 25.0%
! ACATATAATGCTATTACCAA+AGG + chr5_3:13855091-13855110 Msa0800470:CDS 25.0%
! TTTGTTCACAATACGAATAT+TGG - chr5_3:13855434-13855453 None:intergenic 25.0%
! ATTGTGAACAAATTCCTAAA+TGG + chr5_3:13855442-13855461 Msa0800470:CDS 25.0%
! GATTGTCATATATAACATCA+TGG + chr5_3:13855652-13855671 Msa0800470:intron 25.0%
!! TCTTAAATTTGATTTACACG+CGG - chr5_3:13855694-13855713 None:intergenic 25.0%
!!! CATTAAATTTCTAGAGTTGA+CGG - chr5_3:13855801-13855820 None:intergenic 25.0%
! AAGAATATACACAAACTAGT+CGG - chr5_3:13855996-13856015 None:intergenic 25.0%
!! ATTGATTCATTATTGTTCCT+AGG + chr5_3:13856033-13856052 Msa0800470:intron 25.0%
! TTGATTCATTATTGTTCCTA+GGG + chr5_3:13856034-13856053 Msa0800470:intron 25.0%
!!! TGCTTTTTCATCTTTTTTTG+TGG + chr5_3:13856317-13856336 Msa0800470:intron 25.0%
!!! GCTTTTTCATCTTTTTTTGT+GGG + chr5_3:13856318-13856337 Msa0800470:intron 25.0%
!!! CTTTTTCATCTTTTTTTGTG+GGG + chr5_3:13856319-13856338 Msa0800470:intron 25.0%
!! TTTTTATCCTGCTTATGTTT+CGG + chr5_3:13856379-13856398 Msa0800470:intron 25.0%
! ATTGTCTAAATAATGTGGAA+TGG + chr5_3:13856498-13856517 Msa0800470:three_prime_UTR 25.0%
! TTGTCTAAATAATGTGGAAT+GGG + chr5_3:13856499-13856518 Msa0800470:three_prime_UTR 25.0%
! TTTACATTCTAGTGAATATC+AGG + chr5_3:13856709-13856728 Msa0800470:three_prime_UTR 25.0%
!! GTGAATATCAGGAATTTTTA+TGG + chr5_3:13856720-13856739 Msa0800470:three_prime_UTR 25.0%
! ATAAAGCATAAATTGTACTG+AGG + chr5_3:13856755-13856774 Msa0800470:three_prime_UTR 25.0%
! GAGTGTATTAATCAGATTAA+GGG - chr5_3:13856866-13856885 None:intergenic 25.0%
! TGAGTGTATTAATCAGATTA+AGG - chr5_3:13856867-13856886 None:intergenic 25.0%
! CATATTATTTACAACTTCCT+GGG - chr5_3:13856923-13856942 None:intergenic 25.0%
! ACATATTATTTACAACTTCC+TGG - chr5_3:13856924-13856943 None:intergenic 25.0%
ATAAGAGAAGAATAGTAGGT+AGG - chr5_3:13849581-13849600 None:intergenic 30.0%
TCAATCTCAATCTCTTACTA+TGG + chr5_3:13849649-13849668 Msa0800470:exon 30.0%
CAATCTCAATCTCTTACTAT+GGG + chr5_3:13849650-13849669 Msa0800470:exon 30.0%
GTCTTCAATATGTTGTTGAA+TGG - chr5_3:13849823-13849842 None:intergenic 30.0%
! AAAGATTTGGTTTCCTCAAA+TGG + chr5_3:13850590-13850609 Msa0800470:CDS 30.0%
! AAGATTTGGTTTCCTCAAAT+GGG + chr5_3:13850591-13850610 Msa0800470:CDS 30.0%
AGAAGACAAACTAGAATAAC+TGG - chr5_3:13850800-13850819 None:intergenic 30.0%
! TTTGCAAATTCAACTTTTGC+AGG + chr5_3:13850829-13850848 Msa0800470:intron 30.0%
AATCATAGTTGTGTGTGAAT+CGG - chr5_3:13850927-13850946 None:intergenic 30.0%
ACTCAAATGTTAAGAAAGCA+TGG + chr5_3:13851233-13851252 Msa0800470:CDS 30.0%
! CTCAAATGTTAAGAAAGCAT+GGG + chr5_3:13851234-13851253 Msa0800470:CDS 30.0%
! TCAAATGTTAAGAAAGCATG+GGG + chr5_3:13851235-13851254 Msa0800470:CDS 30.0%
GAAAGATTGATTAATCAGCT+AGG - chr5_3:13851336-13851355 None:intergenic 30.0%
! TTGCAATATTTGAAACTGAC+CGG + chr5_3:13851496-13851515 Msa0800470:CDS 30.0%
CATCTTATTAGCTCGTAAAT+AGG - chr5_3:13851622-13851641 None:intergenic 30.0%
GTGATGCAAAATAAAAGGAA+TGG - chr5_3:13851886-13851905 None:intergenic 30.0%
GTGTAGTGATGCAAAATAAA+AGG - chr5_3:13851891-13851910 None:intergenic 30.0%
AAATAAGATTTCAGAGTTGG+TGG - chr5_3:13851983-13852002 None:intergenic 30.0%
GTTTGTGTGGTAAATTATAG+AGG + chr5_3:13852198-13852217 Msa0800470:intron 30.0%
GTGGTAAATTATAGAGGAAT+CGG + chr5_3:13852204-13852223 Msa0800470:intron 30.0%
!! TCCTTGCTTTAAATCTTTTC+AGG + chr5_3:13852272-13852291 Msa0800470:intron 30.0%
TGAAAGAAATGAAAGCAGAT+TGG + chr5_3:13852314-13852333 Msa0800470:CDS 30.0%
TAAACCCAACTTTATTGTTG+AGG - chr5_3:13852348-13852367 None:intergenic 30.0%
CAACAATAAAGTTGGGTTTA+AGG + chr5_3:13852348-13852367 Msa0800470:CDS 30.0%
CCATATTTGAAAACGAAACA+TGG - chr5_3:13852475-13852494 None:intergenic 30.0%
! CCATGTTTCGTTTTCAAATA+TGG + chr5_3:13852472-13852491 Msa0800470:intron 30.0%
TATGGTTTATCAATAGCCAA+TGG + chr5_3:13852490-13852509 Msa0800470:intron 30.0%
ATGGTTTATCAATAGCCAAT+GGG + chr5_3:13852491-13852510 Msa0800470:intron 30.0%
ATTTACTGAAAATTGCCCAT+TGG - chr5_3:13852509-13852528 None:intergenic 30.0%
ACATATCTATGTTTAGGTGT+AGG - chr5_3:13852536-13852555 None:intergenic 30.0%
GTAAACTTGGTATATTCATG+TGG - chr5_3:13852676-13852695 None:intergenic 30.0%
CATATTATGTTACTGTAAGG+TGG - chr5_3:13852740-13852759 None:intergenic 30.0%
TCGCATATTATGTTACTGTA+AGG - chr5_3:13852743-13852762 None:intergenic 30.0%
ATCAAGTGTTAGTTATGCTT+AGG + chr5_3:13852904-13852923 Msa0800470:intron 30.0%
! ATGATATGATTTTACACCCT+CGG + chr5_3:13853051-13853070 Msa0800470:intron 30.0%
GTGAGAGAAACATTATTCTA+TGG + chr5_3:13853101-13853120 Msa0800470:intron 30.0%
AAAGCATACATTCTAGATAG+TGG - chr5_3:13853156-13853175 None:intergenic 30.0%
! GAAATACAAGACTTTAAGAG+GGG + chr5_3:13853307-13853326 Msa0800470:intron 30.0%
! AAATACAAGACTTTAAGAGG+GGG + chr5_3:13853308-13853327 Msa0800470:intron 30.0%
ACAAAATCTTCCTAATTTGG+GGG + chr5_3:13853366-13853385 Msa0800470:intron 30.0%
!! TAATGTCTTAGGCTTTGTTT+GGG - chr5_3:13853604-13853623 None:intergenic 30.0%
!! TTAATGTCTTAGGCTTTGTT+TGG - chr5_3:13853605-13853624 None:intergenic 30.0%
!! TTACGGAGTTTTAATGTCTT+AGG - chr5_3:13853615-13853634 None:intergenic 30.0%
GTATAGTATTGCATTGTTAC+AGG + chr5_3:13853759-13853778 Msa0800470:intron 30.0%
!! AACTTTGTCTGAGATTCTTT+TGG - chr5_3:13853796-13853815 None:intergenic 30.0%
! ATTTGAGGTATTTGTACAAC+TGG - chr5_3:13853887-13853906 None:intergenic 30.0%
TACTAGCTAGAAAACAAAGA+AGG - chr5_3:13854088-13854107 None:intergenic 30.0%
TCGCTAATGTGAAACAAAAA+GGG - chr5_3:13854135-13854154 None:intergenic 30.0%
ATCGCTAATGTGAAACAAAA+AGG - chr5_3:13854136-13854155 None:intergenic 30.0%
AACAAATTATTAGGGGGAAA+TGG - chr5_3:13854236-13854255 None:intergenic 30.0%
AATAGTGAACAGATAGCAAT+CGG - chr5_3:13854271-13854290 None:intergenic 30.0%
TTACTAAGTATTTGCAGAAG+AGG + chr5_3:13854356-13854375 Msa0800470:CDS 30.0%
AGTATTTGCTCATAATATGG+CGG + chr5_3:13854398-13854417 Msa0800470:intron 30.0%
! ATTTAATTTACGTACTGTGC+CGG - chr5_3:13854785-13854804 None:intergenic 30.0%
TATGTTTCCCTAAACATATC+GGG - chr5_3:13855076-13855095 None:intergenic 30.0%
CAGATAAACTATTCCACATA+GGG - chr5_3:13855120-13855139 None:intergenic 30.0%
ACAGATAAACTATTCCACAT+AGG - chr5_3:13855121-13855140 None:intergenic 30.0%
AATAGTTTATCTGTTCCATC+TGG + chr5_3:13855127-13855146 Msa0800470:CDS 30.0%
!! ATGCTCATGCCTTTAAAATA+AGG - chr5_3:13855199-13855218 None:intergenic 30.0%
AAATTCCTAAATGGAGAAGT+TGG + chr5_3:13855451-13855470 Msa0800470:CDS 30.0%
! GAAGGAACATGTATAGTTTT+AGG - chr5_3:13855478-13855497 None:intergenic 30.0%
AAAACTATACATGTTCCTTC+TGG + chr5_3:13855478-13855497 Msa0800470:CDS 30.0%
AAACTATACATGTTCCTTCT+GGG + chr5_3:13855479-13855498 Msa0800470:CDS 30.0%
TTCTTAACTATGTGACATGT+AGG + chr5_3:13855539-13855558 Msa0800470:intron 30.0%
CATAAAAGCAAAAAAGGCTT+TGG - chr5_3:13855617-13855636 None:intergenic 30.0%
AGAGTTGACGGAAAAAAAAA+GGG - chr5_3:13855789-13855808 None:intergenic 30.0%
TAGAGTTGACGGAAAAAAAA+AGG - chr5_3:13855790-13855809 None:intergenic 30.0%
AAAGATGAAAAAGCAAGACA+TGG - chr5_3:13856312-13856331 None:intergenic 30.0%
TAAATAACCGAAACATAAGC+AGG - chr5_3:13856389-13856408 None:intergenic 30.0%
GCTTATGTTTCGGTTATTTA+TGG + chr5_3:13856389-13856408 Msa0800470:intron 30.0%
ATCAATAAACTAAGGAACTC+AGG + chr5_3:13856575-13856594 Msa0800470:three_prime_UTR 30.0%
TCTGTTTACGAGAATAAAAG+TGG + chr5_3:13856659-13856678 Msa0800470:three_prime_UTR 30.0%
!! CGAGAATAAAAGTGGTTTTA+CGG + chr5_3:13856667-13856686 Msa0800470:three_prime_UTR 30.0%
!! TACATCTGTGTTTTTAAACC+TGG + chr5_3:13856794-13856813 Msa0800470:three_prime_UTR 30.0%
!! ACATCTGTGTTTTTAAACCT+GGG + chr5_3:13856795-13856814 Msa0800470:three_prime_UTR 30.0%
ATGATCTCCTTGAAGAAATA+AGG + chr5_3:13856945-13856964 Msa0800470:three_prime_UTR 30.0%
TGATCTCCTTGAAGAAATAA+GGG + chr5_3:13856946-13856965 Msa0800470:three_prime_UTR 30.0%
AATAGTAGGTAGGTGAGAAA+AGG - chr5_3:13849571-13849590 None:intergenic 35.0%
CAACAACATATTGAAGACGT+TGG + chr5_3:13849825-13849844 Msa0800470:CDS 35.0%
TTTAATTATTACCGGGTGTC+TGG + chr5_3:13849930-13849949 Msa0800470:intron 35.0%
ATGCACTTCCTTACTCAATA+AGG + chr5_3:13850014-13850033 Msa0800470:CDS 35.0%
GAAGAATACTTCTCCTAAAC+AGG + chr5_3:13850114-13850133 Msa0800470:CDS 35.0%
TTTGCATCTGTCTTACCAAT+GGG - chr5_3:13850380-13850399 None:intergenic 35.0%
ATTTGCATCTGTCTTACCAA+TGG - chr5_3:13850381-13850400 None:intergenic 35.0%
!! TTTTGGTTACTTTCAGGTAC+CGG + chr5_3:13850471-13850490 Msa0800470:intron 35.0%
TGATCAATGACAAGATCAAC+CGG - chr5_3:13850493-13850512 None:intergenic 35.0%
AAGATCAGAAAATGCTGTTC+AGG + chr5_3:13850534-13850553 Msa0800470:CDS 35.0%
AAATGCTGTTCAGGCAAATA+TGG + chr5_3:13850543-13850562 Msa0800470:CDS 35.0%
ATATGGAACTTGAATTCCAG+AGG + chr5_3:13850560-13850579 Msa0800470:CDS 35.0%
! AGATTTGGTTTCCTCAAATG+GGG + chr5_3:13850592-13850611 Msa0800470:CDS 35.0%
TGAATGATGCAATAACCTGA+TGG - chr5_3:13850669-13850688 None:intergenic 35.0%
! CAGGTCAATTTAGAATACCT+TGG + chr5_3:13850848-13850867 Msa0800470:intron 35.0%
AGAGTTGTGTTCAACACAAA+TGG + chr5_3:13850872-13850891 Msa0800470:CDS 35.0%
TCACACACAACTATGATTGA+TGG + chr5_3:13850929-13850948 Msa0800470:CDS 35.0%
! ACAACTATGATTGATGGCTT+GGG + chr5_3:13850935-13850954 Msa0800470:CDS 35.0%
AGGTAAAAATAACGTGCTAC+TGG + chr5_3:13851011-13851030 Msa0800470:intron 35.0%
GTGGTTGGGTTCAAATTATT+AGG + chr5_3:13851164-13851183 Msa0800470:CDS 35.0%
TTATTAGGCAAACTACGAAG+TGG + chr5_3:13851179-13851198 Msa0800470:CDS 35.0%
! GGCAAGTTTGTAGAGTTTTA+TGG + chr5_3:13851263-13851282 Msa0800470:CDS 35.0%
ACGAGCTAATAAGATGTTTG+TGG + chr5_3:13851626-13851645 Msa0800470:CDS 35.0%
TTCAAGATTGAGCTCCAAAT+AGG - chr5_3:13851783-13851802 None:intergenic 35.0%
ATGATTAAACAAGCCAGCAA+GGG - chr5_3:13852045-13852064 None:intergenic 35.0%
TATGATTAAACAAGCCAGCA+AGG - chr5_3:13852046-13852065 None:intergenic 35.0%
! ACATTCAGTTTTTCATTGCG+TGG + chr5_3:13852249-13852268 Msa0800470:intron 35.0%
! GCCTGAAAAGATTTAAAGCA+AGG - chr5_3:13852276-13852295 None:intergenic 35.0%
! GGGTTTAAGGTATTAACTTC+TGG + chr5_3:13852361-13852380 Msa0800470:intron 35.0%
! TGGTGGAATGAAGTATCATT+TGG - chr5_3:13852720-13852739 None:intergenic 35.0%
ATTATGTTACTGTAAGGTGG+TGG - chr5_3:13852737-13852756 None:intergenic 35.0%
ACACTCTTCAGAATTTCACT+TGG - chr5_3:13853021-13853040 None:intergenic 35.0%
! GAGGGTGTAAAATCATATCA+TGG - chr5_3:13853052-13853071 None:intergenic 35.0%
! TGATATGATTTTACACCCTC+GGG + chr5_3:13853052-13853071 Msa0800470:intron 35.0%
AAACAAAGCCATAAAGCAAC+GGG - chr5_3:13853234-13853253 None:intergenic 35.0%
CAAACAAAGCCATAAAGCAA+CGG - chr5_3:13853235-13853254 None:intergenic 35.0%
GAACTCAACAATTGTATTGG+AGG + chr5_3:13853388-13853407 Msa0800470:intron 35.0%
! ATTGTATTGGAGGAGGATTT+TGG + chr5_3:13853398-13853417 Msa0800470:intron 35.0%
AAGCATTACACTAGGATTTG+AGG - chr5_3:13853902-13853921 None:intergenic 35.0%
TCAAATCCTAGTGTAATGCT+TGG + chr5_3:13853901-13853920 Msa0800470:CDS 35.0%
! TGCAAAGAAAGCATGTGATT+TGG + chr5_3:13853936-13853955 Msa0800470:CDS 35.0%
! GCAAAGAAAGCATGTGATTT+GGG + chr5_3:13853937-13853956 Msa0800470:CDS 35.0%
TTAGTCAATGTCTCTGCATT+TGG + chr5_3:13853968-13853987 Msa0800470:intron 35.0%
ATTCATGAGTACATGCACAT+TGG - chr5_3:13854053-13854072 None:intergenic 35.0%
TTCACATTAGCGATTGTTTG+AGG + chr5_3:13854142-13854161 Msa0800470:intron 35.0%
TAAACTATTAGGTGAAGCCA+TGG + chr5_3:13854299-13854318 Msa0800470:intron 35.0%
AACCGTATTTGAATCAGCTA+GGG + chr5_3:13854483-13854502 Msa0800470:CDS 35.0%
! AACCCTAGCTGATTCAAATA+CGG - chr5_3:13854488-13854507 None:intergenic 35.0%
TTCAGTAATTGCAGATGCAA+CGG - chr5_3:13854570-13854589 None:intergenic 35.0%
GCATCTGCAATTACTGAAAA+TGG + chr5_3:13854572-13854591 Msa0800470:CDS 35.0%
TGGTATTACTTGTGAATCTG+AGG + chr5_3:13854613-13854632 Msa0800470:intron 35.0%
TCTGGAAATAGGAACTTTGA+GGG + chr5_3:13854691-13854710 Msa0800470:CDS 35.0%
CAAGAAGCAAAATGCATACA+TGG - chr5_3:13854813-13854832 None:intergenic 35.0%
! TTGCTTCTTGCTGTCTAATT+TGG + chr5_3:13854823-13854842 Msa0800470:intron 35.0%
GAAGAAATAGCAGATGTAAG+TGG + chr5_3:13854944-13854963 Msa0800470:intron 35.0%
CGATTGTACAACCTGAAAAT+AGG - chr5_3:13855044-13855063 None:intergenic 35.0%
!!! CATGAGCCACCTTATTTTAA+AGG + chr5_3:13855187-13855206 Msa0800470:CDS 35.0%
!! CTCATGCCTTTAAAATAAGG+TGG - chr5_3:13855196-13855215 None:intergenic 35.0%
AACTATACATGTTCCTTCTG+GGG + chr5_3:13855480-13855499 Msa0800470:CDS 35.0%
GTCATATATAACATCATGGG+AGG + chr5_3:13855656-13855675 Msa0800470:intron 35.0%
ATTTAAGAGTTTCGACCCTA+CGG + chr5_3:13855706-13855725 Msa0800470:intron 35.0%
AATCCAACATGATATCCGTA+GGG - chr5_3:13855724-13855743 None:intergenic 35.0%
AAATCCAACATGATATCCGT+AGG - chr5_3:13855725-13855744 None:intergenic 35.0%
TTGTCAGAAATACAAGAGTG+AGG + chr5_3:13855863-13855882 Msa0800470:intron 35.0%
TGTCAGAAATACAAGAGTGA+GGG + chr5_3:13855864-13855883 Msa0800470:intron 35.0%
!!! CACGATACAATTATTTTGGC+TGG + chr5_3:13855888-13855907 Msa0800470:CDS 35.0%
!! TCATAGCAAAAAGCTTTGAG+AGG + chr5_3:13856068-13856087 Msa0800470:CDS 35.0%
ATTCACCGTAGTAATTTGGT+GGG + chr5_3:13856091-13856110 Msa0800470:CDS 35.0%
! ATTCCTTTGTGTTTCAAGTC+TGG + chr5_3:13856124-13856143 Msa0800470:CDS 35.0%
! TTCCTTTGTGTTTCAAGTCT+GGG + chr5_3:13856125-13856144 Msa0800470:CDS 35.0%
TACCTCTGTATCAAATCTCA+GGG - chr5_3:13856281-13856300 None:intergenic 35.0%
ATACCTCTGTATCAAATCTC+AGG - chr5_3:13856282-13856301 None:intergenic 35.0%
AGAAACAGCATCAAAACAGA+CGG - chr5_3:13856348-13856367 None:intergenic 35.0%
ATGTTTCGGTTATTTATGGC+AGG + chr5_3:13856393-13856412 Msa0800470:intron 35.0%
! GAACTTGCTTACTTCAATCA+TGG + chr5_3:13856418-13856437 Msa0800470:CDS 35.0%
!! AGCATTGATCAAGTTTCTGA+TGG - chr5_3:13856461-13856480 None:intergenic 35.0%
AATAAACTAAGGAACTCAGG+TGG + chr5_3:13856578-13856597 Msa0800470:three_prime_UTR 35.0%
TATTTACAACTTCCTGGGAT+GGG - chr5_3:13856918-13856937 None:intergenic 35.0%
TTATTTACAACTTCCTGGGA+TGG - chr5_3:13856919-13856938 None:intergenic 35.0%
GATCTCCTTGAAGAAATAAG+GGG + chr5_3:13856947-13856966 Msa0800470:three_prime_UTR 35.0%
! CAAAACCCCTTATTTCTTCA+AGG - chr5_3:13856955-13856974 None:intergenic 35.0%
! AAAAAGAGCGTGAAGAACGA+AGG - chr5_3:13849610-13849629 None:intergenic 40.0%
!! GCTCTCAACGATTCTAGAAT+CGG + chr5_3:13849895-13849914 Msa0800470:CDS 40.0%
TGTCTGTGTGTTTGAATGGT+TGG + chr5_3:13849953-13849972 Msa0800470:intron 40.0%
GAATACTTCTCCTAAACAGG+TGG + chr5_3:13850117-13850136 Msa0800470:CDS 40.0%
AATGGAATCTCCACCTGTTT+AGG - chr5_3:13850130-13850149 None:intergenic 40.0%
ACTAAACACTCATCCATTCC+CGG - chr5_3:13850204-13850223 None:intergenic 40.0%
TGTCATTGATCACTCTGTTC+AGG + chr5_3:13850501-13850520 Msa0800470:CDS 40.0%
ACTTGAATTCCAGAGGAACA+AGG + chr5_3:13850567-13850586 Msa0800470:CDS 40.0%
CAAATCTTTCCTTGTTCCTC+TGG - chr5_3:13850579-13850598 None:intergenic 40.0%
CAGAGGAACAAGGAAAGATT+TGG + chr5_3:13850577-13850596 Msa0800470:CDS 40.0%
TGTTGAACACAACTCTACCA+AGG - chr5_3:13850868-13850887 None:intergenic 40.0%
! CACAACTATGATTGATGGCT+TGG + chr5_3:13850934-13850953 Msa0800470:CDS 40.0%
AGTAACAGTCAAGACCAAGT+CGG - chr5_3:13851216-13851235 None:intergenic 40.0%
! TTAAGAAAGCATGGGGTTGT+TGG + chr5_3:13851242-13851261 Msa0800470:CDS 40.0%
CTAGGAACATGATGCTACAA+AGG - chr5_3:13851318-13851337 None:intergenic 40.0%
TATTTCCTTTATGCAGGGGA+AGG + chr5_3:13851376-13851395 Msa0800470:intron 40.0%
TTGCAAAGTGACATGATCCA+CGG - chr5_3:13851482-13851501 None:intergenic 40.0%
! AATATTTGAAACTGACCGGC+AGG + chr5_3:13851500-13851519 Msa0800470:CDS 40.0%
TTCTTACACGTCTTTCTTGC+AGG + chr5_3:13851581-13851600 Msa0800470:intron 40.0%
! GATGTTTGTGGACTACAATG+AGG + chr5_3:13851638-13851657 Msa0800470:CDS 40.0%
! ATGAGGACTCGTTACCTTTT+TGG - chr5_3:13851830-13851849 None:intergenic 40.0%
!! TAAGATTTCAGAGTTGGTGG+TGG - chr5_3:13851980-13851999 None:intergenic 40.0%
TCAGTTAAGCCGAATGAATG+TGG - chr5_3:13852089-13852108 None:intergenic 40.0%
TGTTACATTCGACAACGTTG+TGG + chr5_3:13852167-13852186 Msa0800470:intron 40.0%
TTCAAAGTAACACGGTCATG+AGG - chr5_3:13852298-13852317 None:intergenic 40.0%
CCTGCCTCAACAATAAAGTT+GGG + chr5_3:13852341-13852360 Msa0800470:CDS 40.0%
GTTATGCTTAGGCTTATGTG+TGG + chr5_3:13852915-13852934 Msa0800470:intron 40.0%
TCATGCCTTTAGTGCATGAT+AGG + chr5_3:13852967-13852986 Msa0800470:intron 40.0%
TCCATCCTATCATGCACTAA+AGG - chr5_3:13852975-13852994 None:intergenic 40.0%
CAGAATTTCACTTGGCAAGA+TGG - chr5_3:13853013-13853032 None:intergenic 40.0%
! GATATGATTTTACACCCTCG+GGG + chr5_3:13853053-13853072 Msa0800470:intron 40.0%
! ATATGATTTTACACCCTCGG+GGG + chr5_3:13853054-13853073 Msa0800470:intron 40.0%
TTTCTCTCACTTCGCATTGT+TGG - chr5_3:13853091-13853110 None:intergenic 40.0%
TAAAGCAACGGGTGCAAATA+GGG - chr5_3:13853223-13853242 None:intergenic 40.0%
ATAAAGCAACGGGTGCAAAT+AGG - chr5_3:13853224-13853243 None:intergenic 40.0%
! TATTTGCACCCGTTGCTTTA+TGG + chr5_3:13853223-13853242 Msa0800470:intron 40.0%
!! TATGGCTTTGTTTGCGAGTT+TGG + chr5_3:13853241-13853260 Msa0800470:intron 40.0%
TTGTTGAGTTCCCCCAAATT+AGG - chr5_3:13853379-13853398 None:intergenic 40.0%
GGGGAACTCAACAATTGTAT+TGG + chr5_3:13853385-13853404 Msa0800470:intron 40.0%
CTCAACAATTGTATTGGAGG+AGG + chr5_3:13853391-13853410 Msa0800470:intron 40.0%
! TATTGGAGGAGGATTTTGGA+GGG + chr5_3:13853402-13853421 Msa0800470:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG - chr5_3:13853597-13853616 None:intergenic 40.0%
AAAAGTGAACGGCATTCTTG+AGG - chr5_3:13853641-13853660 None:intergenic 40.0%
CCAATGCAGTCAAAAGTGAA+CGG - chr5_3:13853652-13853671 None:intergenic 40.0%
TGCAATGAGCACATTCTTCA+GGG - chr5_3:13853694-13853713 None:intergenic 40.0%
ATGCAATGAGCACATTCTTC+AGG - chr5_3:13853695-13853714 None:intergenic 40.0%
CCTTGTACTATTGAACTTCC+TGG - chr5_3:13853721-13853740 None:intergenic 40.0%
CCAGGAAGTTCAATAGTACA+AGG + chr5_3:13853718-13853737 Msa0800470:intron 40.0%
ACACCAGCAAAACTTAAGCA+TGG + chr5_3:13853838-13853857 Msa0800470:CDS 40.0%
CACCAGCAAAACTTAAGCAT+GGG + chr5_3:13853839-13853858 Msa0800470:CDS 40.0%
ACCAGCAAAACTTAAGCATG+GGG + chr5_3:13853840-13853859 Msa0800470:CDS 40.0%
ACATGCTTTCTTTGCAACCA+AGG - chr5_3:13853932-13853951 None:intergenic 40.0%
!!! GCAAGACTTGTTTTGATCCA+TGG - chr5_3:13854319-13854338 None:intergenic 40.0%
ATCAAAACAAGTCTTGCTCC+AGG + chr5_3:13854322-13854341 Msa0800470:CDS 40.0%
TTAGTAACTACACCAGAACC+TGG - chr5_3:13854343-13854362 None:intergenic 40.0%
!! ATCCTGTATTGCTTTTGCAG+TGG + chr5_3:13854455-13854474 Msa0800470:intron 40.0%
CAACCGTATTTGAATCAGCT+AGG + chr5_3:13854482-13854501 Msa0800470:CDS 40.0%
ACTACGTGCATTGGAAATTC+AGG + chr5_3:13854530-13854549 Msa0800470:CDS 40.0%
CTACGTGCATTGGAAATTCA+GGG + chr5_3:13854531-13854550 Msa0800470:CDS 40.0%
TACGTGCATTGGAAATTCAG+GGG + chr5_3:13854532-13854551 Msa0800470:CDS 40.0%
CAGCTGTATTGTCTGGAAAT+AGG + chr5_3:13854680-13854699 Msa0800470:CDS 40.0%
GTCTGGAAATAGGAACTTTG+AGG + chr5_3:13854690-13854709 Msa0800470:CDS 40.0%
!! TACATCTGCTATTTCTTCGC+TGG - chr5_3:13854942-13854961 None:intergenic 40.0%
ATCTGGCAATCTTTATGCCT+GGG + chr5_3:13855144-13855163 Msa0800470:CDS 40.0%
!! ATAAGTTGATGTAGAGTCCC+AGG - chr5_3:13855164-13855183 None:intergenic 40.0%
GTAAGCATTCTTCACTCCAT+GGG - chr5_3:13855236-13855255 None:intergenic 40.0%
AGTAAGCATTCTTCACTCCA+TGG - chr5_3:13855237-13855256 None:intergenic 40.0%
GCTTACTGTTTGCTCAACTT+TGG + chr5_3:13855250-13855269 Msa0800470:CDS 40.0%
TAGGTCCAACTTCTCCATTT+AGG - chr5_3:13855459-13855478 None:intergenic 40.0%
GAAGTTATCAGTCTTCGATG+CGG + chr5_3:13855504-13855523 Msa0800470:CDS 40.0%
! AGGCTTTGGTATTGCTACTT+CGG - chr5_3:13855603-13855622 None:intergenic 40.0%
GTCAGAAATACAAGAGTGAG+GGG + chr5_3:13855865-13855884 Msa0800470:intron 40.0%
! GGGGCACGATACAATTATTT+TGG + chr5_3:13855884-13855903 Msa0800470:CDS 40.0%
CAAGGAATTACCAGTAGCAT+TGG - chr5_3:13855960-13855979 None:intergenic 40.0%
GAGGATTCACCGTAGTAATT+TGG + chr5_3:13856087-13856106 Msa0800470:CDS 40.0%
GATTCACCGTAGTAATTTGG+TGG + chr5_3:13856090-13856109 Msa0800470:CDS 40.0%
CCATTCCCACCAAATTACTA+CGG - chr5_3:13856099-13856118 None:intergenic 40.0%
! CGTAGTAATTTGGTGGGAAT+GGG + chr5_3:13856097-13856116 Msa0800470:CDS 40.0%
! TCCTTTGTGTTTCAAGTCTG+GGG + chr5_3:13856126-13856145 Msa0800470:CDS 40.0%
AATGGTGTAACGTTCATGAC+CGG - chr5_3:13856176-13856195 None:intergenic 40.0%
CGAATTTCATTCACACTGCT+TGG - chr5_3:13856205-13856224 None:intergenic 40.0%
AGTGTGAATGAAATTCGACC+TGG + chr5_3:13856208-13856227 Msa0800470:CDS 40.0%
TACCCTGAGATTTGATACAG+AGG + chr5_3:13856276-13856295 Msa0800470:CDS 40.0%
CTTGCTTACTTCAATCATGG+AGG + chr5_3:13856421-13856440 Msa0800470:CDS 40.0%
GAATTTCCTCCCACATTGAA+AGG - chr5_3:13856536-13856555 None:intergenic 40.0%
TTGAAGACGTTGGAAAAGCC+AGG + chr5_3:13849835-13849854 Msa0800470:CDS 45.0%
CTGGTGTCTGTGTGTTTGAA+TGG + chr5_3:13849949-13849968 Msa0800470:intron 45.0%
GAACATGTTAATGCCGGGAA+TGG + chr5_3:13850188-13850207 Msa0800470:intron 45.0%
ACGCATTTGAACCCCATTTG+AGG - chr5_3:13850606-13850625 None:intergenic 45.0%
!! AACATGCTTGTTGTTCCTCC+TGG + chr5_3:13850631-13850650 Msa0800470:CDS 45.0%
!! TGATGGACTATTCCTGATCC+AGG - chr5_3:13850652-13850671 None:intergenic 45.0%
TGGATCAGGAATAGTCCATC+AGG + chr5_3:13850651-13850670 Msa0800470:CDS 45.0%
AATTTGAACCCAACCACACC+AGG - chr5_3:13851161-13851180 None:intergenic 45.0%
AGGCATGAGTGAACTACCTT+TGG + chr5_3:13851396-13851415 Msa0800470:CDS 45.0%
!! AGGAGACATGTTTGCTATGG+TGG - chr5_3:13851431-13851450 None:intergenic 45.0%
! CTCAGGAGACATGTTTGCTA+TGG - chr5_3:13851434-13851453 None:intergenic 45.0%
GCAAACATGTCTCCTGAGTA+TGG + chr5_3:13851436-13851455 Msa0800470:CDS 45.0%
TGCAAAGTGACATGATCCAC+GGG - chr5_3:13851481-13851500 None:intergenic 45.0%
TACAGTTTCATCACTCCTGC+CGG - chr5_3:13851518-13851537 None:intergenic 45.0%
AGCAAACTCTCAGTGAGATC+AGG - chr5_3:13851721-13851740 None:intergenic 45.0%
! GAGAGTGTACTCGTCCTATT+TGG + chr5_3:13851766-13851785 Msa0800470:CDS 45.0%
GATGTTGAACCATGTGTCTC+AGG + chr5_3:13851803-13851822 Msa0800470:CDS 45.0%
! CTTTTTGGACCTGAGACACA+TGG - chr5_3:13851815-13851834 None:intergenic 45.0%
CATGTGTCTCAGGTCCAAAA+AGG + chr5_3:13851813-13851832 Msa0800470:CDS 45.0%
GCCTGCCTCAACAATAAAGT+TGG + chr5_3:13852340-13852359 Msa0800470:CDS 45.0%
CCCAACTTTATTGTTGAGGC+AGG - chr5_3:13852344-13852363 None:intergenic 45.0%
! AAAGGCATGACTGAGAGAGA+GGG - chr5_3:13852957-13852976 None:intergenic 45.0%
! TAAAGGCATGACTGAGAGAG+AGG - chr5_3:13852958-13852977 None:intergenic 45.0%
GCCTTTAGTGCATGATAGGA+TGG + chr5_3:13852971-13852990 Msa0800470:intron 45.0%
GTTAACACCAACCTTGAGTG+AGG + chr5_3:13853193-13853212 Msa0800470:intron 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr5_3:13853245-13853264 Msa0800470:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + chr5_3:13853246-13853265 Msa0800470:intron 45.0%
!! AAGGGAGGGCTTTGGAAAAA+AGG + chr5_3:13853269-13853288 Msa0800470:intron 45.0%
!! GAGGGCTTTGGAAAAAAGGA+AGG + chr5_3:13853273-13853292 Msa0800470:intron 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG + chr5_3:13853282-13853301 Msa0800470:intron 45.0%
! AAGACTTTAAGAGGGGGTGA+GGG + chr5_3:13853314-13853333 Msa0800470:intron 45.0%
! GTATTGGAGGAGGATTTTGG+AGG + chr5_3:13853401-13853420 Msa0800470:intron 45.0%
GTGGGAAATATGGGGGAAAA+TGG - chr5_3:13853556-13853575 None:intergenic 45.0%
ATTTGGGGGGTGGGAAATAT+GGG - chr5_3:13853565-13853584 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr5_3:13853592-13853611 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr5_3:13853593-13853612 None:intergenic 45.0%
CGGCATTCTTGAGGTGATTA+CGG - chr5_3:13853632-13853651 None:intergenic 45.0%
!! CCGTTCACTTTTGACTGCAT+TGG + chr5_3:13853649-13853668 Msa0800470:intron 45.0%
ATGTGCTCATTGCATCTTCC+AGG + chr5_3:13853700-13853719 Msa0800470:intron 45.0%
! TCCCCATGCTTAAGTTTTGC+TGG - chr5_3:13853844-13853863 None:intergenic 45.0%
! AGCATGTGATTTGGGATTGC+AGG + chr5_3:13853945-13853964 Msa0800470:CDS 45.0%
AGCCACTGCAAAAGCAATAC+AGG - chr5_3:13854460-13854479 None:intergenic 45.0%
TATGGATGCACTACGTGCAT+TGG + chr5_3:13854521-13854540 Msa0800470:CDS 45.0%
! CCCTCGTTAATGGATGAACT+CGG - chr5_3:13854717-13854736 None:intergenic 45.0%
CCGAGTTCATCCATTAACGA+GGG + chr5_3:13854714-13854733 Msa0800470:CDS 45.0%
AGGTAGTTAGCCCTCGTTAA+TGG - chr5_3:13854727-13854746 None:intergenic 45.0%
!! TCTGCTATTTCTTCGCTGGA+TGG - chr5_3:13854938-13854957 None:intergenic 45.0%
TGTGCTGCCCGATATGTTTA+GGG + chr5_3:13855066-13855085 Msa0800470:CDS 45.0%
TTACCAAAGGCAACCCTATG+TGG + chr5_3:13855104-13855123 Msa0800470:CDS 45.0%
ATTCCACATAGGGTTGCCTT+TGG - chr5_3:13855110-13855129 None:intergenic 45.0%
CAGGCATAAAGATTGCCAGA+TGG - chr5_3:13855145-13855164 None:intergenic 45.0%
CATCTGGCAATCTTTATGCC+TGG + chr5_3:13855143-13855162 Msa0800470:CDS 45.0%
CCAGATACCTTACAGAACGT+GGG + chr5_3:13855335-13855354 Msa0800470:CDS 45.0%
CAGATACCTTACAGAACGTG+GGG + chr5_3:13855336-13855355 Msa0800470:CDS 45.0%
AGACGAGACTTCAACTCCTA+TGG + chr5_3:13855364-13855383 Msa0800470:CDS 45.0%
! AATGATGAGGTGATGGCAAG+AGG + chr5_3:13855400-13855419 Msa0800470:CDS 45.0%
ACTGATAACTTCTCCCCAGA+AGG - chr5_3:13855496-13855515 None:intergenic 45.0%
!!! ATTTTGGCTGGTGCAGAGTA+TGG + chr5_3:13855900-13855919 Msa0800470:CDS 45.0%
!! TTTTGGCTGGTGCAGAGTAT+GGG + chr5_3:13855901-13855920 Msa0800470:CDS 45.0%
GAGTGGAAGTTCTCGTGATT+GGG + chr5_3:13855923-13855942 Msa0800470:CDS 45.0%
! CCGTAGTAATTTGGTGGGAA+TGG + chr5_3:13856096-13856115 Msa0800470:CDS 45.0%
TCCCCAGACTTGAAACACAA+AGG - chr5_3:13856130-13856149 None:intergenic 45.0%
! ACCGGTCAATCCAAGAGTAT+CGG - chr5_3:13856158-13856177 None:intergenic 45.0%
CACACTGCTTGGAAGATCAA+TGG - chr5_3:13856194-13856213 None:intergenic 45.0%
TCGACCTGGTCAAGATATCA+CGG + chr5_3:13856222-13856241 Msa0800470:CDS 45.0%
AGCCAAGGTCCTTTCAATGT+GGG + chr5_3:13856524-13856543 Msa0800470:three_prime_UTR 45.0%
AAACTAAGGAACTCAGGTGG+AGG + chr5_3:13856581-13856600 Msa0800470:three_prime_UTR 45.0%
AACTAAGGAACTCAGGTGGA+GGG + chr5_3:13856582-13856601 Msa0800470:three_prime_UTR 45.0%
!! TTGTACTGAGGAGCGTTGAA+AGG + chr5_3:13856767-13856786 Msa0800470:three_prime_UTR 45.0%
CATGACACATCTGCTATGCT+AGG - chr5_3:13856892-13856911 None:intergenic 45.0%
!!! ACAATATAATTTTATTTATA+TGG - chr5_3:13854993-13855012 None:intergenic 5.0%
AAGACGTTGGAAAAGCCAGG+TGG + chr5_3:13849838-13849857 Msa0800470:CDS 50.0%
GGTGGAGATTCCATTCAAGC+CGG + chr5_3:13850135-13850154 Msa0800470:CDS 50.0%
AGATTCCATTCAAGCCGGCT+AGG + chr5_3:13850140-13850159 Msa0800470:CDS 50.0%
GATTCCATTCAAGCCGGCTA+GGG + chr5_3:13850141-13850160 Msa0800470:CDS 50.0%
ACGCGCGAACATGTTAATGC+CGG + chr5_3:13850182-13850201 Msa0800470:intron 50.0%
!! CTTGTTGTTCCTCCTGGATC+AGG + chr5_3:13850637-13850656 Msa0800470:CDS 50.0%
TGGACTATTCCTGATCCAGG+AGG - chr5_3:13850649-13850668 None:intergenic 50.0%
CTCTATCCTGACAGCGTTGT+CGG + chr5_3:13850899-13850918 Msa0800470:CDS 50.0%
! ATTGATGGCTTGGGTGTTGC+TGG + chr5_3:13850944-13850963 Msa0800470:CDS 50.0%
!! TTGATGGCTTGGGTGTTGCT+GGG + chr5_3:13850945-13850964 Msa0800470:CDS 50.0%
! CTGACCAAGCATTGCAGCTT+CGG - chr5_3:13850993-13851012 None:intergenic 50.0%
TCATGCCTTCCCCTGCATAA+AGG - chr5_3:13851384-13851403 None:intergenic 50.0%
TCCTGAGTATGGTGCAACCA+TGG + chr5_3:13851447-13851466 Msa0800470:CDS 50.0%
CCTGAGTATGGTGCAACCAT+GGG + chr5_3:13851448-13851467 Msa0800470:CDS 50.0%
AACCATGGGATTCTTTCCCG+TGG + chr5_3:13851462-13851481 Msa0800470:CDS 50.0%
ATCCACGGGAAAGAATCCCA+TGG - chr5_3:13851467-13851486 None:intergenic 50.0%
GAGTACACTCTCTCCACTTG+GGG - chr5_3:13851758-13851777 None:intergenic 50.0%
CGAGTACACTCTCTCCACTT+GGG - chr5_3:13851759-13851778 None:intergenic 50.0%
ACGAGTACACTCTCTCCACT+TGG - chr5_3:13851760-13851779 None:intergenic 50.0%
AACAAGCCAGCAAGGGTCAA+GGG - chr5_3:13852038-13852057 None:intergenic 50.0%
AAACAAGCCAGCAAGGGTCA+AGG - chr5_3:13852039-13852058 None:intergenic 50.0%
TCGACAACGTTGTGGAGTTG+AGG + chr5_3:13852175-13852194 Msa0800470:intron 50.0%
CGACAACGTTGTGGAGTTGA+GGG + chr5_3:13852176-13852195 Msa0800470:intron 50.0%
TGTGGAGTTGAGGGTTTGTG+TGG + chr5_3:13852185-13852204 Msa0800470:intron 50.0%
CTCTCACTTCGCATTGTTGG+TGG - chr5_3:13853088-13853107 None:intergenic 50.0%
! AATAGGGCACTCCTCACTCA+AGG - chr5_3:13853207-13853226 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr5_3:13853244-13853263 Msa0800470:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG + chr5_3:13853251-13853270 Msa0800470:intron 50.0%
! CAAGACTTTAAGAGGGGGTG+AGG + chr5_3:13853313-13853332 Msa0800470:intron 50.0%
TTTGGGGGGTGGGAAATATG+GGG - chr5_3:13853564-13853583 None:intergenic 50.0%
GATTTGGGGGGTGGGAAATA+TGG - chr5_3:13853566-13853585 None:intergenic 50.0%
AGTTTGGAGGGGAGGGATTT+GGG - chr5_3:13853581-13853600 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr5_3:13853594-13853613 None:intergenic 50.0%
GCAGCTCCAAGCATTACACT+AGG - chr5_3:13853910-13853929 None:intergenic 50.0%
TGTAATGCTTGGAGCTGCCT+TGG + chr5_3:13853912-13853931 Msa0800470:CDS 50.0%
ACAAGTCTTGCTCCAGGTTC+TGG + chr5_3:13854328-13854347 Msa0800470:CDS 50.0%
TGGCGGCGTTCACATTTATG+TGG + chr5_3:13854415-13854434 Msa0800470:intron 50.0%
GTAGCTGCAGCTGTATTGTC+TGG + chr5_3:13854673-13854692 Msa0800470:CDS 50.0%
GCCGAGTTCATCCATTAACG+AGG + chr5_3:13854713-13854732 Msa0800470:CDS 50.0%
! TTTACGTACTGTGCCGGCAA+GGG - chr5_3:13854779-13854798 None:intergenic 50.0%
! ATTTACGTACTGTGCCGGCA+AGG - chr5_3:13854780-13854799 None:intergenic 50.0%
ACTTTGACACCGAGCCCATT+GGG + chr5_3:13854870-13854889 Msa0800470:CDS 50.0%
CCATCCTTCGCAATCCCAAT+GGG - chr5_3:13854887-13854906 None:intergenic 50.0%
TCCATCCTTCGCAATCCCAA+TGG - chr5_3:13854888-13854907 None:intergenic 50.0%
GTGTGCTGCCCGATATGTTT+AGG + chr5_3:13855065-13855084 Msa0800470:CDS 50.0%
TCCAGCTGGCAGCATACATA+AGG + chr5_3:13855300-13855319 Msa0800470:CDS 50.0%
TCCTTATGTATGCTGCCAGC+TGG - chr5_3:13855304-13855323 None:intergenic 50.0%
! TCTGTAAGGTATCTGGCTGC+AGG - chr5_3:13855331-13855350 None:intergenic 50.0%
GCCAGATACCTTACAGAACG+TGG + chr5_3:13855334-13855353 Msa0800470:CDS 50.0%
! CCCACGTTCTGTAAGGTATC+TGG - chr5_3:13855338-13855357 None:intergenic 50.0%
TATCGACCCCACGTTCTGTA+AGG - chr5_3:13855345-13855364 None:intergenic 50.0%
CCATCACCTCATCATTGCCA+CGG - chr5_3:13855396-13855415 None:intergenic 50.0%
CATCATGGGAGGTTCCAAAG+TGG + chr5_3:13855667-13855686 Msa0800470:intron 50.0%
GATTTACACGCGGACCACTT+TGG - chr5_3:13855684-13855703 None:intergenic 50.0%
CGACCCTACGGATATCATGT+TGG + chr5_3:13855718-13855737 Msa0800470:intron 50.0%
GGAGTGGAAGTTCTCGTGAT+TGG + chr5_3:13855922-13855941 Msa0800470:CDS 50.0%
TTCTCGTGATTGGGCTGCAA+AGG + chr5_3:13855932-13855951 Msa0800470:CDS 50.0%
TCTCGTGATTGGGCTGCAAA+GGG + chr5_3:13855933-13855952 Msa0800470:CDS 50.0%
TGCAAAGGGACCAATGCTAC+TGG + chr5_3:13855947-13855966 Msa0800470:CDS 50.0%
TATGACAGCTTTCACGCCCT+AGG - chr5_3:13856053-13856072 None:intergenic 50.0%
GCCGATACTCTTGGATTGAC+CGG + chr5_3:13856154-13856173 Msa0800470:CDS 50.0%
ACCTGGTCAAGATATCACGG+TGG + chr5_3:13856225-13856244 Msa0800470:CDS 50.0%
ACCACCGTGATATCTTGACC+AGG - chr5_3:13856229-13856248 None:intergenic 50.0%
ATCACGGTGGTGACAGACAA+TGG + chr5_3:13856238-13856257 Msa0800470:CDS 50.0%
TCACGGTGGTGACAGACAAT+GGG + chr5_3:13856239-13856258 Msa0800470:CDS 50.0%
AATGTGGAATGGGTCAGCCA+AGG + chr5_3:13856509-13856528 Msa0800470:three_prime_UTR 50.0%
CAGCCAAGGTCCTTTCAATG+TGG + chr5_3:13856523-13856542 Msa0800470:three_prime_UTR 50.0%
CTCCCACATTGAAAGGACCT+TGG - chr5_3:13856529-13856548 None:intergenic 50.0%
CAAGGTCCTTTCAATGTGGG+AGG + chr5_3:13856527-13856546 Msa0800470:three_prime_UTR 50.0%
ACGTAGCTACAAGAAAGCCC+AGG - chr5_3:13856815-13856834 None:intergenic 50.0%
ACGTTGGAAAAGCCAGGTGG+TGG + chr5_3:13849841-13849860 Msa0800470:CDS 55.0%
! TTGGAAAAGCCAGGTGGTGG+AGG + chr5_3:13849844-13849863 Msa0800470:CDS 55.0%
CCAAATTCACCTCCACCACC+TGG - chr5_3:13849856-13849875 None:intergenic 55.0%
!! CCAGGTGGTGGAGGTGAATT+TGG + chr5_3:13849853-13849872 Msa0800470:CDS 55.0%
ACACACAGACACCAGACACC+CGG - chr5_3:13849944-13849963 None:intergenic 55.0%
!! ACCTGAAGAAGCACCCTAGC+CGG - chr5_3:13850157-13850176 None:intergenic 55.0%
CGCGCGAACATGTTAATGCC+GGG + chr5_3:13850183-13850202 Msa0800470:intron 55.0%
GTCAACAACAGCAGGCACAC+CGG - chr5_3:13850301-13850320 None:intergenic 55.0%
CAGGCAAGGTCAACAACAGC+AGG - chr5_3:13850309-13850328 None:intergenic 55.0%
GTTCATCGCATCTCGCATGC+AGG - chr5_3:13850328-13850347 None:intergenic 55.0%
GCATGCGAGATGCGATGAAC+AGG + chr5_3:13850328-13850347 Msa0800470:CDS 55.0%
CGAGATGCGATGAACAGGCT+TGG + chr5_3:13850333-13850352 Msa0800470:CDS 55.0%
GATGCGATGAACAGGCTTGG+TGG + chr5_3:13850336-13850355 Msa0800470:CDS 55.0%
! TGCGCGCGCGTGTGTTATTA+TGG + chr5_3:13850714-13850733 Msa0800470:intron 55.0%
GAAGCCGAAGCTGCAATGCT+TGG + chr5_3:13850986-13851005 Msa0800470:CDS 55.0%
CGAAGCTGCAATGCTTGGTC+AGG + chr5_3:13850991-13851010 Msa0800470:CDS 55.0%
TCCTTTGCAGCCCATGAGCA+TGG + chr5_3:13851130-13851149 Msa0800470:intron 55.0%
! ACCATGCTCATGGGCTGCAA+AGG - chr5_3:13851134-13851153 None:intergenic 55.0%
CCAGGTAGGACCATGCTCAT+GGG - chr5_3:13851143-13851162 None:intergenic 55.0%
ACCAGGTAGGACCATGCTCA+TGG - chr5_3:13851144-13851163 None:intergenic 55.0%
ATGGTCCTACCTGGTGTGGT+TGG + chr5_3:13851149-13851168 Msa0800470:CDS 55.0%
TGGTCCTACCTGGTGTGGTT+GGG + chr5_3:13851150-13851169 Msa0800470:CDS 55.0%
TGAACCCAACCACACCAGGT+AGG - chr5_3:13851157-13851176 None:intergenic 55.0%
!! TGGTGTCACAGCTACCGACT+TGG + chr5_3:13851199-13851218 Msa0800470:CDS 55.0%
ATGGTGGCACGATCAGCCAA+AGG - chr5_3:13851415-13851434 None:intergenic 55.0%
CCCATGGTTGCACCATACTC+AGG - chr5_3:13851451-13851470 None:intergenic 55.0%
TGTTGCATTGCAGCCCCAAG+TGG + chr5_3:13851742-13851761 Msa0800470:intron 55.0%
TTCCTACCCTTGACCCTTGC+TGG + chr5_3:13852029-13852048 Msa0800470:intron 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG + chr5_3:13853250-13853269 Msa0800470:intron 55.0%
TTAAGAGGGGGTGAGGGCTT+TGG + chr5_3:13853320-13853339 Msa0800470:intron 55.0%
TTGGGGGGTGGGAAATATGG+GGG - chr5_3:13853563-13853582 None:intergenic 55.0%
TTTGGAGGGGAGGGATTTGG+GGG - chr5_3:13853579-13853598 None:intergenic 55.0%
GTTTGGAGGGGAGGGATTTG+GGG - chr5_3:13853580-13853599 None:intergenic 55.0%
GAGTTTGGAGGGGAGGGATT+TGG - chr5_3:13853582-13853601 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr5_3:13853588-13853607 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr5_3:13853589-13853608 None:intergenic 55.0%
CAACGAGAGGAGGAGAAGCT+AGG - chr5_3:13854747-13854766 None:intergenic 55.0%
GCATAGGCAACAACGAGAGG+AGG - chr5_3:13854757-13854776 None:intergenic 55.0%
AGGGCATAGGCAACAACGAG+AGG - chr5_3:13854760-13854779 None:intergenic 55.0%
GTTGTTGCCTATGCCCTTGC+CGG + chr5_3:13854763-13854782 Msa0800470:CDS 55.0%
GACTTTGACACCGAGCCCAT+TGG + chr5_3:13854869-13854888 Msa0800470:CDS 55.0%
! CTTCGCAATCCCAATGGGCT+CGG - chr5_3:13854882-13854901 None:intergenic 55.0%
CCCATTGGGATTGCGAAGGA+TGG + chr5_3:13854884-13854903 Msa0800470:CDS 55.0%
TCTTCACTCCATGGGAGCCT+GGG - chr5_3:13855228-13855247 None:intergenic 55.0%
TTCTTCACTCCATGGGAGCC+TGG - chr5_3:13855229-13855248 None:intergenic 55.0%
AGCTGGAGAGATGTGGTCAG+TGG - chr5_3:13855287-13855306 None:intergenic 55.0%
ACTGACCACATCTCTCCAGC+TGG + chr5_3:13855286-13855305 Msa0800470:CDS 55.0%
AACTCCTATGGAAGTCGCCG+TGG + chr5_3:13855376-13855395 Msa0800470:CDS 55.0%
ATTGCCACGGCGACTTCCAT+AGG - chr5_3:13855383-13855402 None:intergenic 55.0%
AAGTCGCCGTGGCAATGATG+AGG + chr5_3:13855387-13855406 Msa0800470:CDS 55.0%
CCGTGGCAATGATGAGGTGA+TGG + chr5_3:13855393-13855412 Msa0800470:CDS 55.0%
GTCGGAGCAGAACAGCATCA+AGG - chr5_3:13855978-13855997 None:intergenic 55.0%
GGGGAAGATGCCGATACTCT+TGG + chr5_3:13856145-13856164 Msa0800470:CDS 55.0%
TGTGTCATGTTGCCCATCCC+AGG + chr5_3:13856903-13856922 Msa0800470:three_prime_UTR 55.0%
!! AGCACCCTAGCCGGCTTGAA+TGG - chr5_3:13850148-13850167 None:intergenic 60.0%
TCGCATCTCGCATGCAGGCA+AGG - chr5_3:13850323-13850342 None:intergenic 60.0%
TCGGTTCCGACAACGCTGTC+AGG - chr5_3:13850908-13850927 None:intergenic 60.0%
!! ATGGCTTGGGTGTTGCTGGG+TGG + chr5_3:13850948-13850967 Msa0800470:CDS 60.0%
!! TGGCTTGGGTGTTGCTGGGT+GGG + chr5_3:13850949-13850968 Msa0800470:CDS 60.0%
CCCATGAGCATGGTCCTACC+TGG + chr5_3:13851140-13851159 Msa0800470:CDS 60.0%
GAGCATGGTCCTACCTGGTG+TGG + chr5_3:13851145-13851164 Msa0800470:CDS 60.0%
AGCCAGCAAGGGTCAAGGGT+AGG - chr5_3:13852034-13852053 None:intergenic 60.0%
GGTGGTGTAAAAGCCCCCGA+GGG - chr5_3:13853070-13853089 None:intergenic 60.0%
! TGGTGGTGTAAAAGCCCCCG+AGG - chr5_3:13853071-13853090 None:intergenic 60.0%
GGGCACTCCTCACTCAAGGT+TGG - chr5_3:13853203-13853222 None:intergenic 60.0%
CGAGTTTGGAGGGGAAGGGA+GGG + chr5_3:13853255-13853274 Msa0800470:intron 60.0%
TTGGAGGGGAGGGATTTGGG+GGG - chr5_3:13853578-13853597 None:intergenic 60.0%
! TACTGTGCCGGCAAGGGCAT+AGG - chr5_3:13854773-13854792 None:intergenic 60.0%
CGAGCCCATTGGGATTGCGA+AGG + chr5_3:13854880-13854899 Msa0800470:CDS 60.0%
TTCACTCCATGGGAGCCTGG+GGG - chr5_3:13855226-13855245 None:intergenic 60.0%
CTTCACTCCATGGGAGCCTG+GGG - chr5_3:13855227-13855246 None:intergenic 60.0%
TGCTGCCAGCTGGAGAGATG+TGG - chr5_3:13855294-13855313 None:intergenic 60.0%
GCTGGTGCAGAGTATGGGAG+TGG + chr5_3:13855906-13855925 Msa0800470:CDS 60.0%
! GCCGGCTAGGGTGCTTCTTC+AGG + chr5_3:13850153-13850172 Msa0800470:CDS 65.0%
!! GGCTTGGGTGTTGCTGGGTG+GGG + chr5_3:13850950-13850969 Msa0800470:CDS 65.0%
!! GGTGTTGCTGGGTGGGGAGT+TGG + chr5_3:13850956-13850975 Msa0800470:CDS 65.0%
GTTGCTGGGTGGGGAGTTGG+TGG + chr5_3:13850959-13850978 Msa0800470:CDS 65.0%
GCGAGTTTGGAGGGGAAGGG+AGG + chr5_3:13853254-13853273 Msa0800470:intron 65.0%
TGGAGGGGAAGGGAGGGCTT+TGG + chr5_3:13853261-13853280 Msa0800470:intron 65.0%
! AGAGGGGGTGAGGGCTTTGG+AGG + chr5_3:13853323-13853342 Msa0800470:intron 65.0%
!! GAGGGGGTGAGGGCTTTGGA+GGG + chr5_3:13853324-13853343 Msa0800470:intron 65.0%
!! AGGGGGTGAGGGCTTTGGAG+GGG + chr5_3:13853325-13853344 Msa0800470:intron 65.0%
AGGGGAGGGATTTGGGGGGT+GGG - chr5_3:13853574-13853593 None:intergenic 65.0%
GGCATGAGCATGTCTCCCCC+AGG + chr5_3:13855208-13855227 Msa0800470:CDS 65.0%
ATGTCTCCCCCAGGCTCCCA+TGG + chr5_3:13855217-13855236 Msa0800470:CDS 65.0%
GGAACTCAGGTGGAGGGTCG+TGG + chr5_3:13856588-13856607 Msa0800470:three_prime_UTR 65.0%
GAGGGGAGGGATTTGGGGGG+TGG - chr5_3:13853575-13853594 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 13849517 13856984 13849517 ID=Msa0800470;Name=Msa0800470
chr5_3 mRNA 13849517 13856984 13849517 ID=Msa0800470-mRNA-1;Parent=Msa0800470;Name=Msa0800470-mRNA-1;_AED=0.10;_eAED=0.10;_QI=126|1|1|1|0.95|0.90|21|495|901
chr5_3 exon 13849517 13849526 13849517 ID=Msa0800470-mRNA-1:exon:5763;Parent=Msa0800470-mRNA-1
chr5_3 exon 13849552 13849671 13849552 ID=Msa0800470-mRNA-1:exon:5764;Parent=Msa0800470-mRNA-1
chr5_3 exon 13849809 13849916 13849809 ID=Msa0800470-mRNA-1:exon:5765;Parent=Msa0800470-mRNA-1
chr5_3 exon 13850014 13850174 13850014 ID=Msa0800470-mRNA-1:exon:5766;Parent=Msa0800470-mRNA-1
chr5_3 exon 13850291 13850383 13850291 ID=Msa0800470-mRNA-1:exon:5767;Parent=Msa0800470-mRNA-1
chr5_3 exon 13850487 13850672 13850487 ID=Msa0800470-mRNA-1:exon:5768;Parent=Msa0800470-mRNA-1
chr5_3 exon 13850851 13851012 13850851 ID=Msa0800470-mRNA-1:exon:5769;Parent=Msa0800470-mRNA-1
chr5_3 exon 13851140 13851284 13851140 ID=Msa0800470-mRNA-1:exon:5770;Parent=Msa0800470-mRNA-1
chr5_3 exon 13851392 13851534 13851392 ID=Msa0800470-mRNA-1:exon:5771;Parent=Msa0800470-mRNA-1
chr5_3 exon 13851603 13851659 13851603 ID=Msa0800470-mRNA-1:exon:5772;Parent=Msa0800470-mRNA-1
chr5_3 exon 13851755 13851834 13851755 ID=Msa0800470-mRNA-1:exon:5773;Parent=Msa0800470-mRNA-1
chr5_3 exon 13852294 13852369 13852294 ID=Msa0800470-mRNA-1:exon:5774;Parent=Msa0800470-mRNA-1
chr5_3 exon 13853781 13853966 13853781 ID=Msa0800470-mRNA-1:exon:5775;Parent=Msa0800470-mRNA-1
chr5_3 exon 13854310 13854377 13854310 ID=Msa0800470-mRNA-1:exon:5776;Parent=Msa0800470-mRNA-1
chr5_3 exon 13854475 13854593 13854475 ID=Msa0800470-mRNA-1:exon:5777;Parent=Msa0800470-mRNA-1
chr5_3 exon 13854668 13854789 13854668 ID=Msa0800470-mRNA-1:exon:5778;Parent=Msa0800470-mRNA-1
chr5_3 exon 13854860 13854958 13854860 ID=Msa0800470-mRNA-1:exon:5779;Parent=Msa0800470-mRNA-1
chr5_3 exon 13855052 13855531 13855052 ID=Msa0800470-mRNA-1:exon:5780;Parent=Msa0800470-mRNA-1
chr5_3 exon 13855870 13855968 13855870 ID=Msa0800470-mRNA-1:exon:5781;Parent=Msa0800470-mRNA-1
chr5_3 exon 13856055 13856297 13856055 ID=Msa0800470-mRNA-1:exon:5782;Parent=Msa0800470-mRNA-1
chr5_3 exon 13856415 13856984 13856415 ID=Msa0800470-mRNA-1:exon:5783;Parent=Msa0800470-mRNA-1
chr5_3 five_prime_UTR 13849517 13849526 13849517 ID=Msa0800470-mRNA-1:five_prime_utr;Parent=Msa0800470-mRNA-1
chr5_3 five_prime_UTR 13849552 13849667 13849552 ID=Msa0800470-mRNA-1:five_prime_utr;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13849668 13849671 13849668 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13849809 13849916 13849809 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13850014 13850174 13850014 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13850291 13850383 13850291 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13850487 13850672 13850487 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13850851 13851012 13850851 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13851140 13851284 13851140 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13851392 13851534 13851392 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13851603 13851659 13851603 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13851755 13851834 13851755 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13852294 13852369 13852294 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13853781 13853966 13853781 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13854310 13854377 13854310 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13854475 13854593 13854475 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13854668 13854789 13854668 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13854860 13854958 13854860 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13855052 13855531 13855052 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13855870 13855968 13855870 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13856055 13856297 13856055 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 CDS 13856415 13856489 13856415 ID=Msa0800470-mRNA-1:cds;Parent=Msa0800470-mRNA-1
chr5_3 three_prime_UTR 13856490 13856984 13856490 ID=Msa0800470-mRNA-1:three_prime_utr;Parent=Msa0800470-mRNA-1
Gene Sequence

>Msa0800470

ATGGCAACTCAAAATCCATTCAACAACATATTGAAGACGTTGGAAAAGCCAGGTGGTGGAGGTGAATTTGGAAAATACTTTAGTTTGCAAGCTCTCAACGATTCTAGAATCGATGCACTTCCTTACTCAATAAGGATACTTTTGGAATCTGCAATTCGTAACTGTGATGAGTTTCAAGTTAAGAGTGATGATGTTGAAAAGATTATTGATTGGAAGAATACTTCTCCTAAACAGGTGGAGATTCCATTCAAGCCGGCTAGGGTGCTTCTTCAGGATTTTACCGGTGTGCCTGCTGTTGTTGACCTTGCCTGCATGCGAGATGCGATGAACAGGCTTGGTGGTGATTCTAATAAAATTAACCCATTGGTACCGGTTGATCTTGTCATTGATCACTCTGTTCAGGTTGATGTAGCAAGATCAGAAAATGCTGTTCAGGCAAATATGGAACTTGAATTCCAGAGGAACAAGGAAAGATTTGGTTTCCTCAAATGGGGTTCAAATGCGTTCAACAACATGCTTGTTGTTCCTCCTGGATCAGGAATAGTCCATCAGGTCAATTTAGAATACCTTGGTAGAGTTGTGTTCAACACAAATGGTGTGCTCTATCCTGACAGCGTTGTCGGAACCGATTCACACACAACTATGATTGATGGCTTGGGTGTTGCTGGGTGGGGAGTTGGTGGTATTGAAGCCGAAGCTGCAATGCTTGGTCAGCCCATGAGCATGGTCCTACCTGGTGTGGTTGGGTTCAAATTATTAGGCAAACTACGAAGTGGTGTCACAGCTACCGACTTGGTCTTGACTGTTACTCAAATGTTAAGAAAGCATGGGGTTGTTGGCAAGTTTGTAGAGTTTTATGGGGAAGGCATGAGTGAACTACCTTTGGCTGATCGTGCCACCATAGCAAACATGTCTCCTGAGTATGGTGCAACCATGGGATTCTTTCCCGTGGATCATGTCACTTTGCAATATTTGAAACTGACCGGCAGGAGTGATGAAACTGTTTCTATGATAGAATCCTATTTACGAGCTAATAAGATGTTTGTGGACTACAATGAGCCCCAAGTGGAGAGAGTGTACTCGTCCTATTTGGAGCTCAATCTTGAAGATGTTGAACCATGTGTCTCAGGTCCAAAAAGGCCTCATGACCGTGTTACTTTGAAAGAAATGAAAGCAGATTGGCATGCCTGCCTCAACAATAAAGTTGGGTTTAAGGGCTTTGCTGTGCCAAAAGAATCTCAGACAAAGTTTGCAGAGTTCAAATTTCATGAAACACCAGCAAAACTTAAGCATGGGGATGTTGTTATAGCTGCTATCACCAGTTGTACAAATACCTCAAATCCTAGTGTAATGCTTGGAGCTGCCTTGGTTGCAAAGAAAGCATGTGATTTGGGATTGCAGGTGAAGCCATGGATCAAAACAAGTCTTGCTCCAGGTTCTGGTGTAGTTACTAAGTATTTGCAGAAGAGTGGCTTGCAACCGTATTTGAATCAGCTAGGGTTTAATATAGTTGGGTATGGATGCACTACGTGCATTGGAAATTCAGGGGATATTAATGAAGCCGTTGCATCTGCAATTACTGAAAATGATATAGTAGCTGCAGCTGTATTGTCTGGAAATAGGAACTTTGAGGGCCGAGTTCATCCATTAACGAGGGCTAACTACCTAGCTTCTCCTCCTCTCGTTGTTGCCTATGCCCTTGCCGGCACAGTCAACATTGACTTTGACACCGAGCCCATTGGGATTGCGAAGGATGGAAAACAGATTTTCTTCAGAGATATTTGGCCATCCAGCGAAGAAATAGCAGATGTTGTACAATCGAGTGTGCTGCCCGATATGTTTAGGGAAACATATAATGCTATTACCAAAGGCAACCCTATGTGGAATAGTTTATCTGTTCCATCTGGCAATCTTTATGCCTGGGACTCTACATCAACTTATATTCATGAGCCACCTTATTTTAAAGGCATGAGCATGTCTCCCCCAGGCTCCCATGGAGTGAAGAATGCTTACTGTTTGCTCAACTTTGGAGACAGTATTACCACTGACCACATCTCTCCAGCTGGCAGCATACATAAGGATAGTCCTGCAGCCAGATACCTTACAGAACGTGGGGTCGATAGACGAGACTTCAACTCCTATGGAAGTCGCCGTGGCAATGATGAGGTGATGGCAAGAGGAACTTTTGCCAATATTCGTATTGTGAACAAATTCCTAAATGGAGAAGTTGGACCTAAAACTATACATGTTCCTTCTGGGGAGAAGTTATCAGTCTTCGATGCGGCAAATAAATACAAGAGTGAGGGGCACGATACAATTATTTTGGCTGGTGCAGAGTATGGGAGTGGAAGTTCTCGTGATTGGGCTGCAAAGGGACCAATGCTACTGGGCGTGAAAGCTGTCATAGCAAAAAGCTTTGAGAGGATTCACCGTAGTAATTTGGTGGGAATGGGCATAATTCCTTTGTGTTTCAAGTCTGGGGAAGATGCCGATACTCTTGGATTGACCGGTCATGAACGTTACACCATTGATCTTCCAAGCAGTGTGAATGAAATTCGACCTGGTCAAGATATCACGGTGGTGACAGACAATGGGAAGACATTTTCATGTACCCTGAGATTTGATACAGAGGTTGAACTTGCTTACTTCAATCATGGAGGCATCTTACAATACGCCATCAGAAACTTGATCAATGCTAAACATTGA
Protein sequence

>Msa0800470

MATQNPFNNILKTLEKPGGGGEFGKYFSLQALNDSRIDALPYSIRILLESAIRNCDEFQVKSDDVEKIIDWKNTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNRLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFGFLKWGSNAFNNMLVVPPGSGIVHQVNLEYLGRVVFNTNGVLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLLGKLRSGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIESYLRANKMFVDYNEPQVERVYSSYLELNLEDVEPCVSGPKRPHDRVTLKEMKADWHACLNNKVGFKGFAVPKESQTKFAEFKFHETPAKLKHGDVVIAAITSCTNTSNPSVMLGAALVAKKACDLGLQVKPWIKTSLAPGSGVVTKYLQKSGLQPYLNQLGFNIVGYGCTTCIGNSGDINEAVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVNIDFDTEPIGIAKDGKQIFFRDIWPSSEEIADVVQSSVLPDMFRETYNAITKGNPMWNSLSVPSGNLYAWDSTSTYIHEPPYFKGMSMSPPGSHGVKNAYCLLNFGDSITTDHISPAGSIHKDSPAARYLTERGVDRRDFNSYGSRRGNDEVMARGTFANIRIVNKFLNGEVGPKTIHVPSGEKLSVFDAANKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSSVNEIRPGQDITVVTDNGKTFSCTLRFDTEVELAYFNHGGILQYAIRNLINAKH*