AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622220 MtrunA17_Chr7g0269631 99.843 635 1 0 1 635 1 635 0.0 1310
Msa0622220 MtrunA17_Chr4g0013831 73.194 623 167 0 1 623 1 623 0.0 942
Msa0622220 MtrunA17_Chr1g0186431 42.007 588 325 9 5 586 29 606 1.37e-140 427
Msa0622220 MtrunA17_Chr1g0168161 40.210 572 323 11 5 567 28 589 7.65e-128 394
Msa0622220 MtrunA17_Chr7g0274831 38.035 631 325 15 5 598 34 635 7.75e-122 379
Msa0622220 MtrunA17_Chr1g0190021 38.088 638 358 15 3 623 26 643 2.88e-120 375
Msa0622220 MtrunA17_Chr5g0405701 33.721 258 145 4 334 567 499 754 9.93e-36 144
Msa0622220 MtrunA17_Chr3g0136601 32.258 341 179 11 300 596 331 663 1.25e-33 137
Msa0622220 MtrunA17_Chr8g0371601 32.031 256 152 3 334 567 461 716 5.56e-33 135
Msa0622220 MtrunA17_Chr8g0377481 30.357 280 162 4 335 582 383 661 2.13e-32 134
Msa0622220 MtrunA17_Chr3g0122391 28.333 300 175 5 335 598 431 726 8.11e-32 132
Msa0622220 MtrunA17_Chr5g0447641 30.389 283 158 5 338 582 611 892 6.59e-29 123
Msa0622220 MtrunA17_Chr8g0392301 30.820 305 156 6 338 588 377 680 7.56e-29 122
Msa0622220 MtrunA17_Chr1g0150511 32.973 185 116 4 300 483 337 514 2.42e-20 95.9
Msa0622220 MtrunA17_Chr1g0150511 38.393 112 64 3 484 592 585 694 8.15e-12 68.6
Msa0622220 MtrunA17_Chr1g0194741 26.846 298 160 11 312 563 367 652 2.03e-15 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622220 AT2G40940.1 76.962 599 138 0 2 600 1 599 0.0 935
Msa0622220 AT1G66340.1 71.383 622 174 1 2 623 1 618 0.0 900
Msa0622220 AT3G23150.2 40.555 577 306 14 5 562 32 590 1.41e-120 371
Msa0622220 AT3G23150.1 40.722 582 308 14 5 567 32 595 7.96e-120 374
Msa0622220 AT3G04580.2 36.478 636 377 13 4 623 26 650 7.74e-114 358
Msa0622220 AT3G04580.1 36.478 636 377 13 4 623 26 650 7.74e-114 358
Msa0622220 AT1G04310.1 36.965 514 299 10 5 497 34 543 4.77e-92 298
Msa0622220 AT1G04310.2 36.965 514 299 10 5 497 34 543 4.77e-92 298
Msa0622220 AT5G10720.1 32.500 320 186 8 323 619 339 651 9.92e-38 150
Msa0622220 AT2G17820.1 32.246 276 161 5 314 567 472 743 4.04e-35 142
Msa0622220 AT1G27320.1 29.885 348 185 7 266 582 398 717 6.85e-35 142
Msa0622220 AT5G35750.1 30.405 296 165 7 335 593 578 869 5.64e-31 130
Msa0622220 AT2G01830.5 29.545 308 165 5 338 597 455 758 3.00e-30 127
Msa0622220 AT2G01830.1 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa0622220 AT2G01830.4 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa0622220 AT2G01830.6 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa0622220 AT2G01830.3 29.545 308 165 5 338 597 443 746 3.52e-30 127
Msa0622220 AT2G01830.2 29.545 308 165 5 338 597 466 769 3.58e-30 127
Msa0622220 AT2G47430.1 27.491 291 167 10 334 586 385 669 1.60e-16 84.3
Msa0622220 AT4G16250.1 23.577 246 161 8 326 567 914 1136 6.27e-11 66.2

Find 175 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCACATGCTGCTATTT+TGG 0.127774 4_2:+74584799 Msa0622220:CDS
GATATAAAGATATGCAATTT+TGG 0.178667 4_2:-74586265 None:intergenic
GCTCAGGCCAATCATTAATT+TGG 0.179813 4_2:-74583622 None:intergenic
TTTGTGCAGGTTAAGGATTC+TGG 0.190806 4_2:+74585748 Msa0622220:intron
AATCAACCTTCATGGTGTTT+TGG 0.215357 4_2:+74585129 Msa0622220:CDS
CTGCTTTCTTTCCATATAGA+TGG 0.223591 4_2:+74582979 Msa0622220:CDS
GTGGAGTTGGGTAGGACTTT+AGG 0.238818 4_2:+74583344 Msa0622220:CDS
GATGGGTTCTTATGCAGTTT+GGG 0.252158 4_2:+74582997 Msa0622220:CDS
AGCATTGTCATCACTTCTTT+TGG 0.253771 4_2:+74584970 Msa0622220:CDS
CGCCAATCCTGTAAGGATTC+TGG 0.273695 4_2:-74585438 None:intergenic
TTGGACTAGCTATTTGTAAA+AGG 0.274567 4_2:+74585863 Msa0622220:CDS
CGTTAGTTCAACCATTGATT+TGG 0.279070 4_2:+74586520 Msa0622220:three_prime_UTR
AGTGGATTGATACCGGAAAA+AGG 0.289080 4_2:-74582201 None:intergenic
GCTCTTCCGCCTTGTTCTTA+AGG 0.299367 4_2:-74583205 None:intergenic
AGATGGGTTCTTATGCAGTT+TGG 0.302430 4_2:+74582996 Msa0622220:CDS
ACAAGGCGGAAGAGCTTGAT+AGG 0.308682 4_2:+74583213 Msa0622220:CDS
TGCAAAACCAGAATCCTTAC+AGG 0.315260 4_2:+74585431 Msa0622220:CDS
CAATGAAACTACAATATAAT+CGG 0.315913 4_2:-74586573 None:intergenic
TGCATAAGAACCCATCTATA+TGG 0.316824 4_2:-74582990 None:intergenic
AAGTCTCCGCCTAATCTATT+TGG 0.318508 4_2:+74582153 Msa0622220:five_prime_UTR
CAACATTCTCACATGTCTTC+CGG 0.319637 4_2:-74583267 None:intergenic
ATCTCATGGGTGGGCACATA+TGG 0.329280 4_2:+74586028 Msa0622220:CDS
TAATGATTGGCCTGAGCTTT+CGG 0.339005 4_2:+74583628 Msa0622220:CDS
CACCTGAAGTTGTTGCGGTT+CGG 0.344532 4_2:+74583573 Msa0622220:CDS
CAAATTTCCAAATTAATGAT+TGG 0.349017 4_2:+74583615 Msa0622220:CDS
TCTAGCAGTGGTTCAGGTCT+TGG 0.350863 4_2:+74585844 Msa0622220:CDS
TTCATTGAACCGAGTTAAAC+TGG 0.353085 4_2:+74586589 Msa0622220:three_prime_UTR
AGGAAATGAAGAAGAAGAAA+AGG 0.359374 4_2:-74582103 None:intergenic
ATTGAAGAGTAGTAATGTTT+TGG 0.359573 4_2:+74585036 Msa0622220:CDS
CTGAAGACTTCATTGACAAT+AGG 0.366052 4_2:-74583476 None:intergenic
TGAACCACAATTGGTTCAAC+TGG 0.370506 4_2:+74586613 Msa0622220:three_prime_UTR
ATAGAAGACTTCAAGTATAA+AGG 0.374332 4_2:-74582041 None:intergenic
GAATGTTGACTCATGAAATT+AGG 0.375510 4_2:+74583282 Msa0622220:CDS
GAGAGCGAGGGTCACGATAA+AGG 0.377013 4_2:+74586054 Msa0622220:CDS
GCTGTTTGCAGCTATAGATT+AGG 0.378023 4_2:+74586344 Msa0622220:three_prime_UTR
ACCTGAAGTTGTTGCGGTTC+GGG 0.378789 4_2:+74583574 Msa0622220:CDS
TGTCGATGTTGTTGCAGATC+AGG 0.380378 4_2:+74583727 Msa0622220:CDS
GTTAGTTCAACCATTGATTT+GGG 0.382348 4_2:+74586521 Msa0622220:three_prime_UTR
CTCTCGCCGAGCTAAATCTA+AGG 0.393829 4_2:-74584867 None:intergenic
TAAACTGGTTGAACCACAAT+TGG 0.408863 4_2:+74586604 Msa0622220:three_prime_UTR
ATGGCATGAGTAGGTAGATC+AGG 0.413426 4_2:-74585312 None:intergenic
AGATTCAAACCACTTCTTGA+TGG 0.415200 4_2:-74583392 None:intergenic
GTTCGATCTAGCAGTGGTTC+AGG 0.425531 4_2:+74585838 Msa0622220:CDS
CTCCACTTCCACTATATGCT+TGG 0.434484 4_2:-74586155 None:intergenic
ATTCATTGCTTAATATAACT+TGG 0.435679 4_2:+74586457 Msa0622220:three_prime_UTR
AAATTAGGAGCACTCTTGAT+AGG 0.435699 4_2:+74583297 Msa0622220:CDS
GGGGCAAGAATTAAAGTAAT+GGG 0.436802 4_2:-74585291 None:intergenic
GAGTTGATCCCGGGCTCGCA+TGG 0.439303 4_2:-74584828 None:intergenic
TACTTGACAAGAAGTTCATC+TGG 0.439756 4_2:-74582879 None:intergenic
AGCTCGGCGAGAGGCTGAAA+TGG 0.447274 4_2:+74584877 Msa0622220:CDS
AATGAAACTACAATATAATC+GGG 0.448185 4_2:-74586572 None:intergenic
ATTGATTGATATTCATATGA+AGG 0.448953 4_2:-74582123 None:intergenic
GCTACATTTGTAGTCAAACT+TGG 0.452125 4_2:+74586084 Msa0622220:CDS
GGGTAGGACTTTAGGATTGG+AGG 0.452722 4_2:+74583352 Msa0622220:CDS
ACCCGAACCGCAACAACTTC+AGG 0.453206 4_2:-74583575 None:intergenic
GGCCAAGCATATAGTGGAAG+TGG 0.455936 4_2:+74586153 Msa0622220:CDS
ATTCAGATTTGTAAATCTCA+TGG 0.457675 4_2:+74586014 Msa0622220:intron
ATTCTTACTCAGGAAGAAAC+CGG 0.461381 4_2:+74583248 Msa0622220:CDS
CCAAAATAGCAGCATGTGAA+AGG 0.461533 4_2:-74584799 None:intergenic
TTGTTCCATGAGTTGATCCC+GGG 0.464658 4_2:-74584837 None:intergenic
AGCAGAGGCCAAGCATATAG+TGG 0.467264 4_2:+74586147 Msa0622220:CDS
AGAAGTTCATCTGGAGGATA+AGG 0.468819 4_2:-74582870 None:intergenic
GGAAATGAAGAAGAAGAAAA+GGG 0.469912 4_2:-74582102 None:intergenic
TTGACAATAGGAAGGTTTGT+TGG 0.470136 4_2:-74583464 None:intergenic
AAAGACCACTCTTGTGGAGT+TGG 0.471472 4_2:+74583331 Msa0622220:CDS
AAATCAATGGTTGAACTAAC+GGG 0.472002 4_2:-74586518 None:intergenic
TGGTAGCCTTGAATTAGAAA+TGG 0.472836 4_2:+74585102 Msa0622220:CDS
GTAGTCAAACTTGGGATTTG+TGG 0.473180 4_2:+74586093 Msa0622220:CDS
TGCTTTCTTTCCATATAGAT+GGG 0.474314 4_2:+74582980 Msa0622220:CDS
TTTGTTCCATGAGTTGATCC+CGG 0.480126 4_2:-74584838 None:intergenic
AAGACCACTCTTGTGGAGTT+GGG 0.480183 4_2:+74583332 Msa0622220:CDS
CAAATCAATGGTTGAACTAA+CGG 0.485230 4_2:-74586519 None:intergenic
ACAAAATAAATGAGTTCGAC+AGG 0.487975 4_2:-74582948 None:intergenic
GTTGGGTAGGACTTTAGGAT+TGG 0.493614 4_2:+74583349 Msa0622220:CDS
TGGAGGAGTCCATGCGAGCC+CGG 0.494071 4_2:+74584819 Msa0622220:CDS
TGTGGTATACGCATAGCTCT+CGG 0.503245 4_2:-74583503 None:intergenic
TCAACCATTGATTTGGGAGT+CGG 0.504463 4_2:+74586527 Msa0622220:three_prime_UTR
TCTATCATAACCCTCTGCTC+TGG 0.509698 4_2:-74585007 None:intergenic
GAACCACTGCTAGATCGAAC+AGG 0.510532 4_2:-74585835 None:intergenic
GGAGGAGTCCATGCGAGCCC+GGG 0.516805 4_2:+74584820 Msa0622220:CDS
GTTATGTTTGTGTTGTGAGT+GGG 0.520905 4_2:-74582068 None:intergenic
GTTCTTAAGGAACAACTCAC+GGG 0.520997 4_2:-74583192 None:intergenic
AACCAGAATCCTTACAGGAT+TGG 0.521860 4_2:+74585436 Msa0622220:CDS
CGGAGTGCGCCAAATAGATT+AGG 0.523903 4_2:-74582162 None:intergenic
TTCAGATTTGTAAATCTCAT+GGG 0.524035 4_2:+74586015 Msa0622220:intron
TCTGCTTGCAGCTTGATGAT+CGG 0.525516 4_2:-74586130 None:intergenic
AGGAGGTCGCCAATCCTGTA+AGG 0.525729 4_2:-74585445 None:intergenic
TATAACTAGTTGATACGATA+GGG 0.528891 4_2:-74586412 None:intergenic
AAATGACCATCACTTGATGC+TGG 0.529879 4_2:-74585477 None:intergenic
GGAAGAGCTTGATAGGGAGA+TGG 0.530026 4_2:+74583220 Msa0622220:CDS
CTACATTTGTAGTCAAACTT+GGG 0.530312 4_2:+74586085 Msa0622220:CDS
GTGGTATACGCATAGCTCTC+GGG 0.531017 4_2:-74583502 None:intergenic
TGTTCTTAAGGAACAACTCA+CGG 0.533686 4_2:-74583193 None:intergenic
CTGAACTGACTCCAGAGCAG+AGG 0.535510 4_2:+74584996 Msa0622220:CDS
AAAACCAGTTGAACCAATTG+TGG 0.536954 4_2:-74586617 None:intergenic
GATGGGACTTATTCTTACTC+AGG 0.538781 4_2:+74583238 Msa0622220:CDS
CATGTGGGTGTGTTAGATGA+TGG 0.539856 4_2:+74582824 Msa0622220:exon
ATGGGTTCTTATGCAGTTTG+GGG 0.539955 4_2:+74582998 Msa0622220:CDS
TTAACTTATCATGTACAAGT+TGG 0.540061 4_2:+74583431 Msa0622220:CDS
ATCTTTATATCAATGTCGAC+TGG 0.540215 4_2:+74586277 Msa0622220:three_prime_UTR
GATCTGTCCCGACTGGAAGA+TGG 0.542916 4_2:+74585082 Msa0622220:CDS
TTACTCAATGATGACGACAT+AGG 0.543430 4_2:+74586198 Msa0622220:CDS
AGGGGCAAGAATTAAAGTAA+TGG 0.544261 4_2:-74585292 None:intergenic
ACTCTGAGACTGAGTAAACT+TGG 0.544636 4_2:-74585809 None:intergenic
TCATTTCTATATACGAGTCC+AGG 0.548157 4_2:+74585494 Msa0622220:CDS
GAAGAGCTTGATAGGGAGAT+GGG 0.548570 4_2:+74583221 Msa0622220:CDS
CAATGCTGTCAAATATACTA+AGG 0.548729 4_2:+74585380 Msa0622220:CDS
CATGGGTGGGCACATATGGA+TGG 0.549664 4_2:+74586032 Msa0622220:CDS
GCGAGCCCGGGATCAACTCA+TGG 0.550447 4_2:+74584832 Msa0622220:CDS
GTATAACTAGTTGATACGAT+AGG 0.554353 4_2:-74586413 None:intergenic
AAGGCTACCATCTTCCAGTC+GGG 0.554665 4_2:-74585089 None:intergenic
CAAAATAGCAGCATGTGAAA+GGG 0.558668 4_2:-74584798 None:intergenic
CACTTTCTAGCACTATCAGT+AGG 0.560837 4_2:-74583683 None:intergenic
CTTGATGCTGGATAAAACTC+AGG 0.561674 4_2:-74585465 None:intergenic
CAGGTTAAGGATTCTGGATG+TGG 0.561926 4_2:+74585754 Msa0622220:intron
GAGTCGGTTAGTTCATCAGT+TGG 0.566578 4_2:+74586543 Msa0622220:three_prime_UTR
CTTGCAGCTTGATGATCGGA+TGG 0.567335 4_2:-74586126 None:intergenic
CTAACCGACTCCCAAATCAA+TGG 0.568057 4_2:-74586531 None:intergenic
CAAGGCGGAAGAGCTTGATA+GGG 0.569408 4_2:+74583214 Msa0622220:CDS
CATCGACAAGCTCCAACTCA+TGG 0.570916 4_2:-74583712 None:intergenic
ATCTAACACACCCACATGAA+AGG 0.572240 4_2:-74582819 None:intergenic
TGGCATGAGTAGGTAGATCA+GGG 0.573826 4_2:-74585311 None:intergenic
AGATTTGTAAATCTCATGGG+TGG 0.574861 4_2:+74586018 Msa0622220:intron
ACGTTGCCTTAGATTTAGCT+CGG 0.574999 4_2:+74584861 Msa0622220:CDS
TGCTGTCAAATATACTAAGG+AGG 0.577420 4_2:+74585383 Msa0622220:CDS
GCTGTCAAATATACTAAGGA+GGG 0.577474 4_2:+74585384 Msa0622220:CDS
TATTCTAAAGACCACTCTTG+TGG 0.580698 4_2:+74583325 Msa0622220:CDS
GTAAACTTGGTAAAGAGATG+TGG 0.583173 4_2:-74585796 None:intergenic
CTACTGATAGTGCTAGAAAG+TGG 0.585604 4_2:+74583684 Msa0622220:CDS
GCTAGGATAAGACCTCTTGT+CGG 0.586111 4_2:+74583539 Msa0622220:CDS
TGTTCTAGATCTGTCCCGAC+TGG 0.586169 4_2:+74585075 Msa0622220:CDS
CACACACTTGTCCACTTGCT+AGG 0.588144 4_2:+74583522 Msa0622220:CDS
TTTCATGATTCATGACTGCA+AGG 0.589191 4_2:-74584922 None:intergenic
CCACTCTTGTGGAGTTGGGT+AGG 0.594476 4_2:+74583336 Msa0622220:CDS
GATTTGTAAATCTCATGGGT+GGG 0.596709 4_2:+74586019 Msa0622220:intron
ACTTTCTAGCACTATCAGTA+GGG 0.597780 4_2:-74583682 None:intergenic
AGACTTCATTGACAATAGGA+AGG 0.597850 4_2:-74583472 None:intergenic
GTAAGTGCTTAAATCTAGCA+AGG 0.598885 4_2:-74586179 None:intergenic
CAAGGCTACCATCTTCCAGT+CGG 0.599285 4_2:-74585090 None:intergenic
TGAACTGACTCCAGAGCAGA+GGG 0.605152 4_2:+74584997 Msa0622220:CDS
TGAGTTGTTCCTTAAGAACA+AGG 0.610418 4_2:+74583196 Msa0622220:CDS
GCACATATGGATGGAGAGCG+AGG 0.610844 4_2:+74586041 Msa0622220:CDS
GGCACATATCTTCCGACAAG+AGG 0.613814 4_2:-74583551 None:intergenic
AAGAGATGTGGAATATCTTG+TGG 0.615014 4_2:-74585784 None:intergenic
GTGGTTCAACCAGTTTAACT+CGG 0.615420 4_2:-74586598 None:intergenic
AGAGGTCTTATCCTAGCAAG+TGG 0.615685 4_2:-74583533 None:intergenic
TCATCACCGATGGCATGAGT+AGG 0.616501 4_2:-74585321 None:intergenic
TGTTATGTTTGTGTTGTGAG+TGG 0.617981 4_2:-74582069 None:intergenic
CTTAGATTTAGCTCGGCGAG+AGG 0.619358 4_2:+74584868 Msa0622220:CDS
AGCACACGACACTTTAGCGA+TGG 0.621416 4_2:-74583105 None:intergenic
AAAGTGGCGAGACCATGAGT+TGG 0.625466 4_2:+74583700 Msa0622220:CDS
AAATTTGACAAATGTAGAAG+CGG 0.631499 4_2:-74583599 None:intergenic
GATCATCAAGCTGCAAGCAG+AGG 0.631663 4_2:+74586132 Msa0622220:CDS
CAAGCATATAGTGGAAGTGG+AGG 0.635632 4_2:+74586156 Msa0622220:CDS
ATGCCATCGGTGATGAAAAG+CGG 0.635694 4_2:+74585328 Msa0622220:CDS
AAGGGAGGTAGATCAGGCGG+CGG 0.636261 4_2:-74582182 None:intergenic
TGTGCCACCTGAAGTTGTTG+CGG 0.636371 4_2:+74583568 Msa0622220:CDS
ATGAACAAGCATAAGTGCAG+TGG 0.643228 4_2:-74583141 None:intergenic
CCTACCCAACTCCACAAGAG+TGG 0.646184 4_2:-74583336 None:intergenic
GATCTACCTACTCATGCCAT+CGG 0.647848 4_2:+74585315 Msa0622220:CDS
CCTCTCCCAAAACACCATGA+AGG 0.651300 4_2:-74585135 None:intergenic
CACATATGGATGGAGAGCGA+GGG 0.654671 4_2:+74586042 Msa0622220:CDS
GGACCTGTTCGATCTAGCAG+TGG 0.657911 4_2:+74585832 Msa0622220:CDS
CGAACCGCAACAACTTCAGG+TGG 0.664993 4_2:-74583572 None:intergenic
CTGTGGATGCCATCAAGAAG+TGG 0.665478 4_2:+74583383 Msa0622220:CDS
AGTGCGCCAAATAGATTAGG+CGG 0.682072 4_2:-74582159 None:intergenic
TTGACAAGAAGTTCATCTGG+AGG 0.684589 4_2:-74582876 None:intergenic
GATGCTGGATAAAACTCAGG+AGG 0.685050 4_2:-74585462 None:intergenic
CTAGCAAGTGGACAAGTGTG+TGG 0.685475 4_2:-74583521 None:intergenic
AATGCTATAATTGCATGCAT+CGG 0.690508 4_2:-74584953 None:intergenic
GGCATGAGTAGGTAGATCAG+GGG 0.696928 4_2:-74585310 None:intergenic
ATGAAACTACAATATAATCG+GGG 0.698950 4_2:-74586571 None:intergenic
AAGTTTACTCAGTCTCAGAG+TGG 0.708425 4_2:+74585811 Msa0622220:CDS
GTTGTTCCTTAAGAACAAGG+CGG 0.762407 4_2:+74583199 Msa0622220:CDS
GATTGGAGGAATGTGCACTG+TGG 0.783064 4_2:+74583366 Msa0622220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTCTTTTATTTTAT+TGG + chr4_2:74583754-74583773 Msa0622220:intron 10.0%
!! AGTATATTAAATAGTAGTAT+TGG - chr4_2:74582400-74582419 None:intergenic 15.0%
!! ATTGATTGATATTCATATGA+AGG - chr4_2:74582126-74582145 None:intergenic 20.0%
!! AAAAATATATATAGAGAGAG+TGG - chr4_2:74582222-74582241 None:intergenic 20.0%
!!! TAAATAGTAGTATTGGATAA+TGG - chr4_2:74582393-74582412 None:intergenic 20.0%
!! CAAATTTCCAAATTAATGAT+TGG + chr4_2:74583615-74583634 Msa0622220:CDS 20.0%
!! TACGGAATAAAAAATATTCA+GGG - chr4_2:74583792-74583811 None:intergenic 20.0%
!! ATACGGAATAAAAAATATTC+AGG - chr4_2:74583793-74583812 None:intergenic 20.0%
!! AATAGTTGAAAATTAGGAAA+TGG + chr4_2:74583937-74583956 Msa0622220:intron 20.0%
!! GTATTAAATACAAATATCAC+AGG - chr4_2:74584145-74584164 None:intergenic 20.0%
!!! AAAGTTTCAGGTATTTAATT+TGG - chr4_2:74584528-74584547 None:intergenic 20.0%
!!! AAACTTTTCATTCAATTGTA+TGG + chr4_2:74584541-74584560 Msa0622220:intron 20.0%
!! AATTTCAAACACAGTTAATA+TGG - chr4_2:74584603-74584622 None:intergenic 20.0%
!! AATTCAATCACATTAACATA+TGG - chr4_2:74585556-74585575 None:intergenic 20.0%
!! TTAATATGCATTTCACATAA+GGG - chr4_2:74585938-74585957 None:intergenic 20.0%
!!! GATATAAAGATATGCAATTT+TGG - chr4_2:74586268-74586287 None:intergenic 20.0%
!! ATTCATTGCTTAATATAACT+TGG + chr4_2:74586457-74586476 Msa0622220:three_prime_UTR 20.0%
!!! TTAGGCTATGTTTTTAAAAT+CGG + chr4_2:74586489-74586508 Msa0622220:three_prime_UTR 20.0%
!! AATGAAACTACAATATAATC+GGG - chr4_2:74586575-74586594 None:intergenic 20.0%
!! CAATGAAACTACAATATAAT+CGG - chr4_2:74586576-74586595 None:intergenic 20.0%
! ATAGAAGACTTCAAGTATAA+AGG - chr4_2:74582044-74582063 None:intergenic 25.0%
!!! AGCTACTGTTTTTTCTTTTT+TGG + chr4_2:74582576-74582595 Msa0622220:intron 25.0%
!! CAACTCATTTTATAAATCTG+TGG + chr4_2:74583042-74583061 Msa0622220:CDS 25.0%
! TTAACTTATCATGTACAAGT+TGG + chr4_2:74583431-74583450 Msa0622220:CDS 25.0%
! AAATTTGACAAATGTAGAAG+CGG - chr4_2:74583602-74583621 None:intergenic 25.0%
! AATAGAAAACAACGGAAATA+CGG - chr4_2:74583810-74583829 None:intergenic 25.0%
! AGAAAAGGAATAGAAAACAA+CGG - chr4_2:74583818-74583837 None:intergenic 25.0%
! GTTTAAGCAATCAAAAGAAA+AGG - chr4_2:74583833-74583852 None:intergenic 25.0%
! GCATAGAATAGTTGAAAATT+AGG + chr4_2:74583931-74583950 Msa0622220:intron 25.0%
! AAATAACTATAAAGCCCAAA+TGG - chr4_2:74583977-74583996 None:intergenic 25.0%
! CTTAAGTAAAGAACCATATT+AGG + chr4_2:74584038-74584057 Msa0622220:intron 25.0%
! ACTAAATTTAAGAACGAGAT+TGG + chr4_2:74584331-74584350 Msa0622220:intron 25.0%
! AAATTTACAACAAATGTGTG+TGG + chr4_2:74584443-74584462 Msa0622220:intron 25.0%
! AATTTACAACAAATGTGTGT+GGG + chr4_2:74584444-74584463 Msa0622220:intron 25.0%
! GAATAAAACACTTAAAAGTC+AGG - chr4_2:74584471-74584490 None:intergenic 25.0%
!!! GGTATTTAATTTGGTCTTTT+CGG - chr4_2:74584519-74584538 None:intergenic 25.0%
! ACAATTGAATGAAAAGTTTC+AGG - chr4_2:74584540-74584559 None:intergenic 25.0%
!! ATTGAAGAGTAGTAATGTTT+TGG + chr4_2:74585036-74585055 Msa0622220:CDS 25.0%
!!! TTTTTGCCATTTCTAATTCA+AGG - chr4_2:74585111-74585130 None:intergenic 25.0%
! TGTTAATGTGATTGAATTCT+TGG + chr4_2:74585558-74585577 Msa0622220:intron 25.0%
! GTTAATGTGATTGAATTCTT+GGG + chr4_2:74585559-74585578 Msa0622220:intron 25.0%
! AAGTCGATAACATAATGAAA+AGG - chr4_2:74585656-74585675 None:intergenic 25.0%
! CAACTGTTAGAAATTAATCT+AGG + chr4_2:74585686-74585705 Msa0622220:intron 25.0%
! ATTTCACATAAGGGTAATAA+TGG - chr4_2:74585929-74585948 None:intergenic 25.0%
! GTTAATATGCATTTCACATA+AGG - chr4_2:74585939-74585958 None:intergenic 25.0%
! ATTCAGATTTGTAAATCTCA+TGG + chr4_2:74586014-74586033 Msa0622220:intron 25.0%
! TTCAGATTTGTAAATCTCAT+GGG + chr4_2:74586015-74586034 Msa0622220:intron 25.0%
!! TATAACTAGTTGATACGATA+GGG - chr4_2:74586415-74586434 None:intergenic 25.0%
! ATGAAACTACAATATAATCG+GGG - chr4_2:74586574-74586593 None:intergenic 25.0%
GGAAATGAAGAAGAAGAAAA+GGG - chr4_2:74582105-74582124 None:intergenic 30.0%
AGGAAATGAAGAAGAAGAAA+AGG - chr4_2:74582106-74582125 None:intergenic 30.0%
CTAACATGAGCATTATTGAA+TGG - chr4_2:74582260-74582279 None:intergenic 30.0%
ACATAAATAAACCCAATCTG+AGG - chr4_2:74582620-74582639 None:intergenic 30.0%
!!! GTTCTTGTTGATTTTGAACT+TGG + chr4_2:74582675-74582694 Msa0622220:intron 30.0%
! TTTTACAGATCCTTTCATGT+GGG + chr4_2:74582809-74582828 Msa0622220:intron 30.0%
ACAAAATAAATGAGTTCGAC+AGG - chr4_2:74582951-74582970 None:intergenic 30.0%
TGCTTTCTTTCCATATAGAT+GGG + chr4_2:74582980-74582999 Msa0622220:CDS 30.0%
!! GAATGTTGACTCATGAAATT+AGG + chr4_2:74583282-74583301 Msa0622220:CDS 30.0%
GGCAAAAAGTTATGCAATTA+TGG + chr4_2:74583649-74583668 Msa0622220:CDS 30.0%
!! TAGTTATTTCTCAACCATCA+AGG + chr4_2:74583988-74584007 Msa0622220:intron 30.0%
GAAAAGAAAACGACATAAGA+TGG - chr4_2:74584216-74584235 None:intergenic 30.0%
! AAATCAAAATTAGACTGGCT+CGG - chr4_2:74584253-74584272 None:intergenic 30.0%
!!! AGCCAGTCTAATTTTGATTT+TGG + chr4_2:74584253-74584272 Msa0622220:intron 30.0%
! TTTTGGCCATTGAAGATATA+TGG + chr4_2:74584270-74584289 Msa0622220:intron 30.0%
TAAGAACGAGATTGGAAAAA+TGG + chr4_2:74584339-74584358 Msa0622220:intron 30.0%
AAGAACGAGATTGGAAAAAT+GGG + chr4_2:74584340-74584359 Msa0622220:intron 30.0%
!! TAATTTGGTCTTTTCGGATT+AGG - chr4_2:74584513-74584532 None:intergenic 30.0%
! CATTCAATTGTATGGCTTTT+AGG + chr4_2:74584549-74584568 Msa0622220:intron 30.0%
ATATCAGCACTAGAAAATGT+TGG - chr4_2:74584649-74584668 None:intergenic 30.0%
!!! AACATTTTCTAGTGCTGATA+TGG + chr4_2:74584648-74584667 Msa0622220:intron 30.0%
! AACTAAATGGATTCAGCATA+CGG - chr4_2:74584759-74584778 None:intergenic 30.0%
! AATCCATTTAGTTTCCATAC+AGG + chr4_2:74584766-74584785 Msa0622220:intron 30.0%
AATGCTATAATTGCATGCAT+CGG - chr4_2:74584956-74584975 None:intergenic 30.0%
CAATACATAAATGCTGTTCA+TGG - chr4_2:74585209-74585228 None:intergenic 30.0%
! TGCTTTTCTATTGTTAATGC+AGG + chr4_2:74585227-74585246 Msa0622220:intron 30.0%
!!! AGTTTTTTCACAGATGCTAT+AGG - chr4_2:74585270-74585289 None:intergenic 30.0%
CAATGCTGTCAAATATACTA+AGG + chr4_2:74585380-74585399 Msa0622220:CDS 30.0%
GAAAAGGTAGAGATATCTTT+GGG - chr4_2:74585640-74585659 None:intergenic 30.0%
TGAAAAGGTAGAGATATCTT+TGG - chr4_2:74585641-74585660 None:intergenic 30.0%
!! TTGGACTAGCTATTTGTAAA+AGG + chr4_2:74585863-74585882 Msa0622220:CDS 30.0%
ACTAGCTATTTGTAAAAGGT+AGG + chr4_2:74585867-74585886 Msa0622220:intron 30.0%
CTAGCTATTTGTAAAAGGTA+GGG + chr4_2:74585868-74585887 Msa0622220:intron 30.0%
CTACATTTGTAGTCAAACTT+GGG + chr4_2:74586085-74586104 Msa0622220:CDS 30.0%
!!! AGATATGCAATTTTGGTGTT+TGG - chr4_2:74586261-74586280 None:intergenic 30.0%
ATCTTTATATCAATGTCGAC+TGG + chr4_2:74586277-74586296 Msa0622220:three_prime_UTR 30.0%
! GTATAACTAGTTGATACGAT+AGG - chr4_2:74586416-74586435 None:intergenic 30.0%
! ATAACTTGGAGCAGTATTTT+AGG + chr4_2:74586471-74586490 Msa0622220:three_prime_UTR 30.0%
AAATCAATGGTTGAACTAAC+GGG - chr4_2:74586521-74586540 None:intergenic 30.0%
CAAATCAATGGTTGAACTAA+CGG - chr4_2:74586522-74586541 None:intergenic 30.0%
!! GTTAGTTCAACCATTGATTT+GGG + chr4_2:74586521-74586540 Msa0622220:three_prime_UTR 30.0%
GTTATGTTTGTGTTGTGAGT+GGG - chr4_2:74582071-74582090 None:intergenic 35.0%
TGTTATGTTTGTGTTGTGAG+TGG - chr4_2:74582072-74582091 None:intergenic 35.0%
CGTAAGATTCGAGTAATTGT+TGG + chr4_2:74582467-74582486 Msa0622220:intron 35.0%
! ATATTTAGATTCGTGCTGCT+GGG + chr4_2:74582504-74582523 Msa0622220:intron 35.0%
TCAAACTCAATACCTCAGAT+TGG + chr4_2:74582605-74582624 Msa0622220:intron 35.0%
CAAACTCAATACCTCAGATT+GGG + chr4_2:74582606-74582625 Msa0622220:intron 35.0%
ACGGGTTCAAAAACAAAAAG+TGG - chr4_2:74582766-74582785 None:intergenic 35.0%
! CTTTTACAGATCCTTTCATG+TGG + chr4_2:74582808-74582827 Msa0622220:intron 35.0%
TACTTGACAAGAAGTTCATC+TGG - chr4_2:74582882-74582901 None:intergenic 35.0%
CTGCTTTCTTTCCATATAGA+TGG + chr4_2:74582979-74582998 Msa0622220:CDS 35.0%
TGCATAAGAACCCATCTATA+TGG - chr4_2:74582993-74583012 None:intergenic 35.0%
!! GTTTTAACACTCAACAGATC+GGG - chr4_2:74583173-74583192 None:intergenic 35.0%
!! GGTTTTAACACTCAACAGAT+CGG - chr4_2:74583174-74583193 None:intergenic 35.0%
TGTTCTTAAGGAACAACTCA+CGG - chr4_2:74583196-74583215 None:intergenic 35.0%
TGAGTTGTTCCTTAAGAACA+AGG + chr4_2:74583196-74583215 Msa0622220:CDS 35.0%
ATTCTTACTCAGGAAGAAAC+CGG + chr4_2:74583248-74583267 Msa0622220:CDS 35.0%
!! AAATTAGGAGCACTCTTGAT+AGG + chr4_2:74583297-74583316 Msa0622220:CDS 35.0%
! TATTCTAAAGACCACTCTTG+TGG + chr4_2:74583325-74583344 Msa0622220:CDS 35.0%
AGATTCAAACCACTTCTTGA+TGG - chr4_2:74583395-74583414 None:intergenic 35.0%
TTGACAATAGGAAGGTTTGT+TGG - chr4_2:74583467-74583486 None:intergenic 35.0%
AGACTTCATTGACAATAGGA+AGG - chr4_2:74583475-74583494 None:intergenic 35.0%
CTGAAGACTTCATTGACAAT+AGG - chr4_2:74583479-74583498 None:intergenic 35.0%
! ACTTTCTAGCACTATCAGTA+GGG - chr4_2:74583685-74583704 None:intergenic 35.0%
!! CTATTGCTGTGAACTTGTTT+TGG + chr4_2:74583900-74583919 Msa0622220:intron 35.0%
!!! TGTGAACTTGTTTTGGAGTT+TGG + chr4_2:74583907-74583926 Msa0622220:intron 35.0%
AGGAAATGGCTATCAATCAT+TGG + chr4_2:74583951-74583970 Msa0622220:intron 35.0%
CTATCAATCATTGGCCATTT+GGG + chr4_2:74583960-74583979 Msa0622220:intron 35.0%
TATTCTGTCTTCTACCTTGA+TGG - chr4_2:74584005-74584024 None:intergenic 35.0%
GGTTCTTTACTTAAGTCACT+AGG - chr4_2:74584033-74584052 None:intergenic 35.0%
AACCATATTAGGTATGCATG+TGG + chr4_2:74584049-74584068 Msa0622220:intron 35.0%
TCCCAATAAGTGGCTAAAAA+AGG + chr4_2:74584094-74584113 Msa0622220:intron 35.0%
!!! CCCTTTTTTAGCCACTTATT+GGG - chr4_2:74584098-74584117 None:intergenic 35.0%
CCCAATAAGTGGCTAAAAAA+GGG + chr4_2:74584095-74584114 Msa0622220:intron 35.0%
!!! TCCCTTTTTTAGCCACTTAT+TGG - chr4_2:74584099-74584118 None:intergenic 35.0%
AATAAGTGGCTAAAAAAGGG+AGG + chr4_2:74584098-74584117 Msa0622220:intron 35.0%
ATAAGTGGCTAAAAAAGGGA+GGG + chr4_2:74584099-74584118 Msa0622220:intron 35.0%
ATGTGTAAACTATATCGCAG+AGG - chr4_2:74584188-74584207 None:intergenic 35.0%
TCTGCGATATAGTTTACACA+TGG + chr4_2:74584187-74584206 Msa0622220:intron 35.0%
GGCCAAAATCAAAATTAGAC+TGG - chr4_2:74584258-74584277 None:intergenic 35.0%
CTCAATATCAAGACTGAGAT+AGG + chr4_2:74584296-74584315 Msa0622220:intron 35.0%
AGAACGAGATTGGAAAAATG+GGG + chr4_2:74584341-74584360 Msa0622220:intron 35.0%
!! ATGTTGGCGACATTTTGAAA+CGG - chr4_2:74584633-74584652 None:intergenic 35.0%
CTACCTGTATGGAAACTAAA+TGG - chr4_2:74584772-74584791 None:intergenic 35.0%
CAAAATAGCAGCATGTGAAA+GGG - chr4_2:74584801-74584820 None:intergenic 35.0%
TTTCATGATTCATGACTGCA+AGG - chr4_2:74584925-74584944 None:intergenic 35.0%
! AGCATTGTCATCACTTCTTT+TGG + chr4_2:74584970-74584989 Msa0622220:CDS 35.0%
! TGGTAGCCTTGAATTAGAAA+TGG + chr4_2:74585102-74585121 Msa0622220:CDS 35.0%
ATGGCAAAAATCAACCTTCA+TGG + chr4_2:74585121-74585140 Msa0622220:CDS 35.0%
! AATCAACCTTCATGGTGTTT+TGG + chr4_2:74585129-74585148 Msa0622220:CDS 35.0%
! ATCAACCTTCATGGTGTTTT+GGG + chr4_2:74585130-74585149 Msa0622220:CDS 35.0%
GGGGCAAGAATTAAAGTAAT+GGG - chr4_2:74585294-74585313 None:intergenic 35.0%
AGGGGCAAGAATTAAAGTAA+TGG - chr4_2:74585295-74585314 None:intergenic 35.0%
! CAGACACTTTTGAATGTTGT+GGG + chr4_2:74585357-74585376 Msa0622220:CDS 35.0%
TGCTGTCAAATATACTAAGG+AGG + chr4_2:74585383-74585402 Msa0622220:CDS 35.0%
GCTGTCAAATATACTAAGGA+GGG + chr4_2:74585384-74585403 Msa0622220:CDS 35.0%
! TTTTATCCAGCATCAAGTGA+TGG + chr4_2:74585471-74585490 Msa0622220:CDS 35.0%
TCATTTCTATATACGAGTCC+AGG + chr4_2:74585494-74585513 Msa0622220:CDS 35.0%
TCATCCATACCTACATTTCT+AGG + chr4_2:74585608-74585627 Msa0622220:intron 35.0%
CTTTCCTAGAAATGTAGGTA+TGG - chr4_2:74585615-74585634 None:intergenic 35.0%
AAGAGATGTGGAATATCTTG+TGG - chr4_2:74585787-74585806 None:intergenic 35.0%
GTAAACTTGGTAAAGAGATG+TGG - chr4_2:74585799-74585818 None:intergenic 35.0%
AGATTTGTAAATCTCATGGG+TGG + chr4_2:74586018-74586037 Msa0622220:intron 35.0%
GATTTGTAAATCTCATGGGT+GGG + chr4_2:74586019-74586038 Msa0622220:intron 35.0%
GCTACATTTGTAGTCAAACT+TGG + chr4_2:74586084-74586103 Msa0622220:CDS 35.0%
GTAAGTGCTTAAATCTAGCA+AGG - chr4_2:74586182-74586201 None:intergenic 35.0%
! TTACTCAATGATGACGACAT+AGG + chr4_2:74586198-74586217 Msa0622220:CDS 35.0%
! CGTTAGTTCAACCATTGATT+TGG + chr4_2:74586520-74586539 Msa0622220:three_prime_UTR 35.0%
TTCATTGAACCGAGTTAAAC+TGG + chr4_2:74586589-74586608 Msa0622220:three_prime_UTR 35.0%
TAAACTGGTTGAACCACAAT+TGG + chr4_2:74586604-74586623 Msa0622220:three_prime_UTR 35.0%
AAAACCAGTTGAACCAATTG+TGG - chr4_2:74586620-74586639 None:intergenic 35.0%
AAGTCTCCGCCTAATCTATT+TGG + chr4_2:74582153-74582172 Msa0622220:five_prime_UTR 40.0%
! GTGGATTGATACCGGAAAAA+GGG - chr4_2:74582203-74582222 None:intergenic 40.0%
!! AGTGGATTGATACCGGAAAA+AGG - chr4_2:74582204-74582223 None:intergenic 40.0%
!! TAGAGAGAGTGGATTGATAC+CGG - chr4_2:74582211-74582230 None:intergenic 40.0%
CATATTTAGATTCGTGCTGC+TGG + chr4_2:74582503-74582522 Msa0622220:intron 40.0%
ATAGCATAGGTTGTCATCAC+GGG - chr4_2:74582784-74582803 None:intergenic 40.0%
CATAGCATAGGTTGTCATCA+CGG - chr4_2:74582785-74582804 None:intergenic 40.0%
!! CTGTAAAAGCACCATAGCAT+AGG - chr4_2:74582797-74582816 None:intergenic 40.0%
ATCTAACACACCCACATGAA+AGG - chr4_2:74582822-74582841 None:intergenic 40.0%
AGAAGTTCATCTGGAGGATA+AGG - chr4_2:74582873-74582892 None:intergenic 40.0%
TTGACAAGAAGTTCATCTGG+AGG - chr4_2:74582879-74582898 None:intergenic 40.0%
! AGATGGGTTCTTATGCAGTT+TGG + chr4_2:74582996-74583015 Msa0622220:CDS 40.0%
! GATGGGTTCTTATGCAGTTT+GGG + chr4_2:74582997-74583016 Msa0622220:CDS 40.0%
ATGGGTTCTTATGCAGTTTG+GGG + chr4_2:74582998-74583017 Msa0622220:CDS 40.0%
! GGGGCTTTTATTGTTCTATG+TGG + chr4_2:74583017-74583036 Msa0622220:CDS 40.0%
ATGAACAAGCATAAGTGCAG+TGG - chr4_2:74583144-74583163 None:intergenic 40.0%
GTTCTTAAGGAACAACTCAC+GGG - chr4_2:74583195-74583214 None:intergenic 40.0%
GTTGTTCCTTAAGAACAAGG+CGG + chr4_2:74583199-74583218 Msa0622220:CDS 40.0%
GATGGGACTTATTCTTACTC+AGG + chr4_2:74583238-74583257 Msa0622220:CDS 40.0%
CAACATTCTCACATGTCTTC+CGG - chr4_2:74583270-74583289 None:intergenic 40.0%
GCTCAGGCCAATCATTAATT+TGG - chr4_2:74583625-74583644 None:intergenic 40.0%
!! TAATGATTGGCCTGAGCTTT+CGG + chr4_2:74583628-74583647 Msa0622220:CDS 40.0%
! TAACTTTTTGCCGAAAGCTC+AGG - chr4_2:74583641-74583660 None:intergenic 40.0%
! CACTTTCTAGCACTATCAGT+AGG - chr4_2:74583686-74583705 None:intergenic 40.0%
! CTACTGATAGTGCTAGAAAG+TGG + chr4_2:74583684-74583703 Msa0622220:CDS 40.0%
AGACTCAGAACAGAACTTAC+AGG - chr4_2:74583878-74583897 None:intergenic 40.0%
GCTATCAATCATTGGCCATT+TGG + chr4_2:74583959-74583978 Msa0622220:intron 40.0%
CTCCACATGCATACCTAATA+TGG - chr4_2:74584054-74584073 None:intergenic 40.0%
TGGCCATTGAAGATATATGG+TGG + chr4_2:74584273-74584292 Msa0622220:intron 40.0%
GAGCCACCATATATCTTCAA+TGG - chr4_2:74584279-74584298 None:intergenic 40.0%
TATCAAGACTGAGATAGGCT+CGG + chr4_2:74584301-74584320 Msa0622220:intron 40.0%
AATCTGATGCAGATCTGTCT+AGG + chr4_2:74584418-74584437 Msa0622220:intron 40.0%
!! TTTGGTCTTTTCGGATTAGG+AGG - chr4_2:74584510-74584529 None:intergenic 40.0%
! TAAATGGATTCAGCATACGG+AGG - chr4_2:74584756-74584775 None:intergenic 40.0%
CCAAAATAGCAGCATGTGAA+AGG - chr4_2:74584802-74584821 None:intergenic 40.0%
!! CCTTTCACATGCTGCTATTT+TGG + chr4_2:74584799-74584818 Msa0622220:CDS 40.0%
!!! TTCACATGCTGCTATTTTGG+AGG + chr4_2:74584802-74584821 Msa0622220:CDS 40.0%
!! TTTGTTCCATGAGTTGATCC+CGG - chr4_2:74584841-74584860 None:intergenic 40.0%
ACGTTGCCTTAGATTTAGCT+CGG + chr4_2:74584861-74584880 Msa0622220:CDS 40.0%
! GCAGACACTTTTGAATGTTG+TGG + chr4_2:74585356-74585375 Msa0622220:CDS 40.0%
TGCAAAACCAGAATCCTTAC+AGG + chr4_2:74585431-74585450 Msa0622220:CDS 40.0%
AACCAGAATCCTTACAGGAT+TGG + chr4_2:74585436-74585455 Msa0622220:CDS 40.0%
CTTGATGCTGGATAAAACTC+AGG - chr4_2:74585468-74585487 None:intergenic 40.0%
AAATGACCATCACTTGATGC+TGG - chr4_2:74585480-74585499 None:intergenic 40.0%
TGCACAAAGAAGGATGTTTG+GGG - chr4_2:74585736-74585755 None:intergenic 40.0%
CTGCACAAAGAAGGATGTTT+GGG - chr4_2:74585737-74585756 None:intergenic 40.0%
ATCCTTCTTTGTGCAGGTTA+AGG + chr4_2:74585741-74585760 Msa0622220:intron 40.0%
ATCCTTAACCTGCACAAAGA+AGG - chr4_2:74585746-74585765 None:intergenic 40.0%
TTTGTGCAGGTTAAGGATTC+TGG + chr4_2:74585748-74585767 Msa0622220:intron 40.0%
!! ACTCTGAGACTGAGTAAACT+TGG - chr4_2:74585812-74585831 None:intergenic 40.0%
AAGTTTACTCAGTCTCAGAG+TGG + chr4_2:74585811-74585830 Msa0622220:CDS 40.0%
!! GGTAATAATGGTGACTTGCT+AGG - chr4_2:74585917-74585936 None:intergenic 40.0%
GTAGTCAAACTTGGGATTTG+TGG + chr4_2:74586093-74586112 Msa0622220:CDS 40.0%
GCTGTTTGCAGCTATAGATT+AGG + chr4_2:74586344-74586363 Msa0622220:three_prime_UTR 40.0%
!! TCAACCATTGATTTGGGAGT+CGG + chr4_2:74586527-74586546 Msa0622220:three_prime_UTR 40.0%
GTGGTTCAACCAGTTTAACT+CGG - chr4_2:74586601-74586620 None:intergenic 40.0%
! TGAACCACAATTGGTTCAAC+TGG + chr4_2:74586613-74586632 Msa0622220:three_prime_UTR 40.0%
AGTGCGCCAAATAGATTAGG+CGG - chr4_2:74582162-74582181 None:intergenic 45.0%
AAAAAGGGAGGTAGATCAGG+CGG - chr4_2:74582188-74582207 None:intergenic 45.0%
! CTGATCTACCTCCCTTTTTC+CGG + chr4_2:74582189-74582208 Msa0622220:five_prime_UTR 45.0%
GATTGATACCGGAAAAAGGG+AGG - chr4_2:74582200-74582219 None:intergenic 45.0%
CGTGATGACAACCTATGCTA+TGG + chr4_2:74582783-74582802 Msa0622220:intron 45.0%
CATGTGGGTGTGTTAGATGA+TGG + chr4_2:74582824-74582843 Msa0622220:exon 45.0%
GAAGAGCTTGATAGGGAGAT+GGG + chr4_2:74583221-74583240 Msa0622220:CDS 45.0%
AAAGACCACTCTTGTGGAGT+TGG + chr4_2:74583331-74583350 Msa0622220:CDS 45.0%
AAGACCACTCTTGTGGAGTT+GGG + chr4_2:74583332-74583351 Msa0622220:CDS 45.0%
!! GTTGGGTAGGACTTTAGGAT+TGG + chr4_2:74583349-74583368 Msa0622220:CDS 45.0%
TGTGGTATACGCATAGCTCT+CGG - chr4_2:74583506-74583525 None:intergenic 45.0%
! AGAGGTCTTATCCTAGCAAG+TGG - chr4_2:74583536-74583555 None:intergenic 45.0%
GCTAGGATAAGACCTCTTGT+CGG + chr4_2:74583539-74583558 Msa0622220:CDS 45.0%
TGTCGATGTTGTTGCAGATC+AGG + chr4_2:74583727-74583746 Msa0622220:CDS 45.0%
AGCCACTTATTGGGATTCAG+CGG - chr4_2:74584089-74584108 None:intergenic 45.0%
ATCAAGACTGAGATAGGCTC+GGG + chr4_2:74584302-74584321 Msa0622220:intron 45.0%
!! TTGTTCCATGAGTTGATCCC+GGG - chr4_2:74584840-74584859 None:intergenic 45.0%
TCTATCATAACCCTCTGCTC+TGG - chr4_2:74585010-74585029 None:intergenic 45.0%
TGGCATGAGTAGGTAGATCA+GGG - chr4_2:74585314-74585333 None:intergenic 45.0%
ATGGCATGAGTAGGTAGATC+AGG - chr4_2:74585315-74585334 None:intergenic 45.0%
GATCTACCTACTCATGCCAT+CGG + chr4_2:74585315-74585334 Msa0622220:CDS 45.0%
ATGCCATCGGTGATGAAAAG+CGG + chr4_2:74585328-74585347 Msa0622220:CDS 45.0%
GATGCTGGATAAAACTCAGG+AGG - chr4_2:74585465-74585484 None:intergenic 45.0%
ACGAGTCCAGGTTATGACTT+TGG + chr4_2:74585506-74585525 Msa0622220:intron 45.0%
GAGATGCCAAAGTCATAACC+TGG - chr4_2:74585515-74585534 None:intergenic 45.0%
GGGCTCTTTCCTAGAAATGT+AGG - chr4_2:74585620-74585639 None:intergenic 45.0%
CCTGCACAAAGAAGGATGTT+TGG - chr4_2:74585738-74585757 None:intergenic 45.0%
CCAAACATCCTTCTTTGTGC+AGG + chr4_2:74585735-74585754 Msa0622220:intron 45.0%
CAGGTTAAGGATTCTGGATG+TGG + chr4_2:74585754-74585773 Msa0622220:intron 45.0%
! TCTGCTTGCAGCTTGATGAT+CGG - chr4_2:74586133-74586152 None:intergenic 45.0%
CTCCACTTCCACTATATGCT+TGG - chr4_2:74586158-74586177 None:intergenic 45.0%
! CAAGCATATAGTGGAAGTGG+AGG + chr4_2:74586156-74586175 Msa0622220:CDS 45.0%
! CTAACCGACTCCCAAATCAA+TGG - chr4_2:74586534-74586553 None:intergenic 45.0%
! GAGTCGGTTAGTTCATCAGT+TGG + chr4_2:74586543-74586562 Msa0622220:three_prime_UTR 45.0%
!! AAAAAAAAAAAAAATAGTAT+AGG - chr4_2:74582439-74582458 None:intergenic 5.0%
CGGAGTGCGCCAAATAGATT+AGG - chr4_2:74582165-74582184 None:intergenic 50.0%
CGGAAAAAGGGAGGTAGATC+AGG - chr4_2:74582191-74582210 None:intergenic 50.0%
AGCACACGACACTTTAGCGA+TGG - chr4_2:74583108-74583127 None:intergenic 50.0%
! GCTCTTCCGCCTTGTTCTTA+AGG - chr4_2:74583208-74583227 None:intergenic 50.0%
ACAAGGCGGAAGAGCTTGAT+AGG + chr4_2:74583213-74583232 Msa0622220:CDS 50.0%
CAAGGCGGAAGAGCTTGATA+GGG + chr4_2:74583214-74583233 Msa0622220:CDS 50.0%
GGAAGAGCTTGATAGGGAGA+TGG + chr4_2:74583220-74583239 Msa0622220:CDS 50.0%
GTGGAGTTGGGTAGGACTTT+AGG + chr4_2:74583344-74583363 Msa0622220:CDS 50.0%
!! GGGTAGGACTTTAGGATTGG+AGG + chr4_2:74583352-74583371 Msa0622220:CDS 50.0%
GATTGGAGGAATGTGCACTG+TGG + chr4_2:74583366-74583385 Msa0622220:CDS 50.0%
CTGTGGATGCCATCAAGAAG+TGG + chr4_2:74583383-74583402 Msa0622220:CDS 50.0%
GTGGTATACGCATAGCTCTC+GGG - chr4_2:74583505-74583524 None:intergenic 50.0%
CTAGCAAGTGGACAAGTGTG+TGG - chr4_2:74583524-74583543 None:intergenic 50.0%
CACACACTTGTCCACTTGCT+AGG + chr4_2:74583522-74583541 Msa0622220:CDS 50.0%
GGCACATATCTTCCGACAAG+AGG - chr4_2:74583554-74583573 None:intergenic 50.0%
TGTGCCACCTGAAGTTGTTG+CGG + chr4_2:74583568-74583587 Msa0622220:CDS 50.0%
CACCTGAAGTTGTTGCGGTT+CGG + chr4_2:74583573-74583592 Msa0622220:CDS 50.0%
ACCTGAAGTTGTTGCGGTTC+GGG + chr4_2:74583574-74583593 Msa0622220:CDS 50.0%
AAAGTGGCGAGACCATGAGT+TGG + chr4_2:74583700-74583719 Msa0622220:CDS 50.0%
CATCGACAAGCTCCAACTCA+TGG - chr4_2:74583715-74583734 None:intergenic 50.0%
CTCACATGCACCTCAGATGT+GGG + chr4_2:74584681-74584700 Msa0622220:intron 50.0%
TCACATGCACCTCAGATGTG+GGG + chr4_2:74584682-74584701 Msa0622220:intron 50.0%
CAATCATGTCCCCACATCTG+AGG - chr4_2:74584694-74584713 None:intergenic 50.0%
AAGGGCAACTGCTACCTGTA+TGG - chr4_2:74584783-74584802 None:intergenic 50.0%
CTCTCGCCGAGCTAAATCTA+AGG - chr4_2:74584870-74584889 None:intergenic 50.0%
! CTTAGATTTAGCTCGGCGAG+AGG + chr4_2:74584868-74584887 Msa0622220:CDS 50.0%
! TGAACTGACTCCAGAGCAGA+GGG + chr4_2:74584997-74585016 Msa0622220:CDS 50.0%
! TGTTCTAGATCTGTCCCGAC+TGG + chr4_2:74585075-74585094 Msa0622220:CDS 50.0%
AAGGCTACCATCTTCCAGTC+GGG - chr4_2:74585092-74585111 None:intergenic 50.0%
CAAGGCTACCATCTTCCAGT+CGG - chr4_2:74585093-74585112 None:intergenic 50.0%
CCTCTCCCAAAACACCATGA+AGG - chr4_2:74585138-74585157 None:intergenic 50.0%
!!! CCTTCATGGTGTTTTGGGAG+AGG + chr4_2:74585135-74585154 Msa0622220:CDS 50.0%
GGCATGAGTAGGTAGATCAG+GGG - chr4_2:74585313-74585332 None:intergenic 50.0%
TCATCACCGATGGCATGAGT+AGG - chr4_2:74585324-74585343 None:intergenic 50.0%
!!! AAGCCGCTTTTCATCACCGA+TGG - chr4_2:74585334-74585353 None:intergenic 50.0%
CGCCAATCCTGTAAGGATTC+TGG - chr4_2:74585441-74585460 None:intergenic 50.0%
! GTTTGGGGTCAGTCATGAGA+TGG - chr4_2:74585721-74585740 None:intergenic 50.0%
GAACCACTGCTAGATCGAAC+AGG - chr4_2:74585838-74585857 None:intergenic 50.0%
GTTCGATCTAGCAGTGGTTC+AGG + chr4_2:74585838-74585857 Msa0622220:CDS 50.0%
TCTAGCAGTGGTTCAGGTCT+TGG + chr4_2:74585844-74585863 Msa0622220:CDS 50.0%
ATCTCATGGGTGGGCACATA+TGG + chr4_2:74586028-74586047 Msa0622220:CDS 50.0%
CACATATGGATGGAGAGCGA+GGG + chr4_2:74586042-74586061 Msa0622220:CDS 50.0%
! CTTGCAGCTTGATGATCGGA+TGG - chr4_2:74586129-74586148 None:intergenic 50.0%
GATCATCAAGCTGCAAGCAG+AGG + chr4_2:74586132-74586151 Msa0622220:CDS 50.0%
AGCAGAGGCCAAGCATATAG+TGG + chr4_2:74586147-74586166 Msa0622220:CDS 50.0%
! GGCCAAGCATATAGTGGAAG+TGG + chr4_2:74586153-74586172 Msa0622220:CDS 50.0%
CCTACCCAACTCCACAAGAG+TGG - chr4_2:74583339-74583358 None:intergenic 55.0%
CCACTCTTGTGGAGTTGGGT+AGG + chr4_2:74583336-74583355 Msa0622220:CDS 55.0%
CGAACCGCAACAACTTCAGG+TGG - chr4_2:74583575-74583594 None:intergenic 55.0%
ACCCGAACCGCAACAACTTC+AGG - chr4_2:74583578-74583597 None:intergenic 55.0%
TGCATGTGGAGTATGCGCTG+AGG + chr4_2:74584063-74584082 Msa0622220:intron 55.0%
GGCCGCTGAATCCCAATAAG+TGG + chr4_2:74584084-74584103 Msa0622220:intron 55.0%
GTGGCTAAAAAAGGGAGGGC+AGG + chr4_2:74584103-74584122 Msa0622220:intron 55.0%
! AGGAGGCATGTGCAGGCAAA+GGG - chr4_2:74584493-74584512 None:intergenic 55.0%
! TAGGAGGCATGTGCAGGCAA+AGG - chr4_2:74584494-74584513 None:intergenic 55.0%
! TCGGATTAGGAGGCATGTGC+AGG - chr4_2:74584500-74584519 None:intergenic 55.0%
! CCACATCTGAGGTGCATGTG+AGG - chr4_2:74584683-74584702 None:intergenic 55.0%
CCTCACATGCACCTCAGATG+TGG + chr4_2:74584680-74584699 Msa0622220:intron 55.0%
! CTGAACTGACTCCAGAGCAG+AGG + chr4_2:74584996-74585015 Msa0622220:CDS 55.0%
GATCTGTCCCGACTGGAAGA+TGG + chr4_2:74585082-74585101 Msa0622220:CDS 55.0%
AGGAGGTCGCCAATCCTGTA+AGG - chr4_2:74585448-74585467 None:intergenic 55.0%
GGACCTGTTCGATCTAGCAG+TGG + chr4_2:74585832-74585851 Msa0622220:CDS 55.0%
CATGGGTGGGCACATATGGA+TGG + chr4_2:74586032-74586051 Msa0622220:CDS 55.0%
GCACATATGGATGGAGAGCG+AGG + chr4_2:74586041-74586060 Msa0622220:CDS 55.0%
GAGAGCGAGGGTCACGATAA+AGG + chr4_2:74586054-74586073 Msa0622220:CDS 55.0%
AAGGGAGGTAGATCAGGCGG+CGG - chr4_2:74582185-74582204 None:intergenic 60.0%
AGCTCGGCGAGAGGCTGAAA+TGG + chr4_2:74584877-74584896 Msa0622220:CDS 60.0%
TGGAGGAGTCCATGCGAGCC+CGG + chr4_2:74584819-74584838 Msa0622220:CDS 65.0%
! GAGTTGATCCCGGGCTCGCA+TGG - chr4_2:74584831-74584850 None:intergenic 65.0%
GCGAGCCCGGGATCAACTCA+TGG + chr4_2:74584832-74584851 Msa0622220:CDS 65.0%
GGAGGAGTCCATGCGAGCCC+GGG + chr4_2:74584820-74584839 Msa0622220:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 74582026 74586675 74582026 ID=Msa0622220;Name=Msa0622220
chr4_2 mRNA 74582026 74586675 74582026 ID=Msa0622220-mRNA-1;Parent=Msa0622220;Name=Msa0622220-mRNA-1;_AED=0.04;_eAED=0.04;_QI=208|1|1|1|0.8|0.66|6|421|635
chr4_2 exon 74582026 74582210 74582026 ID=Msa0622220-mRNA-1:exon:22463;Parent=Msa0622220-mRNA-1
chr4_2 exon 74582817 74583748 74582817 ID=Msa0622220-mRNA-1:exon:22464;Parent=Msa0622220-mRNA-1
chr4_2 exon 74584788 74585156 74584788 ID=Msa0622220-mRNA-1:exon:22465;Parent=Msa0622220-mRNA-1
chr4_2 exon 74585249 74585515 74585249 ID=Msa0622220-mRNA-1:exon:22466;Parent=Msa0622220-mRNA-1
chr4_2 exon 74585757 74585884 74585757 ID=Msa0622220-mRNA-1:exon:22467;Parent=Msa0622220-mRNA-1
chr4_2 exon 74586020 74586675 74586020 ID=Msa0622220-mRNA-1:exon:22468;Parent=Msa0622220-mRNA-1
chr4_2 five_prime_UTR 74582026 74582210 74582026 ID=Msa0622220-mRNA-1:five_prime_utr;Parent=Msa0622220-mRNA-1
chr4_2 five_prime_UTR 74582817 74582839 74582817 ID=Msa0622220-mRNA-1:five_prime_utr;Parent=Msa0622220-mRNA-1
chr4_2 CDS 74582840 74583748 74582840 ID=Msa0622220-mRNA-1:cds;Parent=Msa0622220-mRNA-1
chr4_2 CDS 74584788 74585156 74584788 ID=Msa0622220-mRNA-1:cds;Parent=Msa0622220-mRNA-1
chr4_2 CDS 74585249 74585515 74585249 ID=Msa0622220-mRNA-1:cds;Parent=Msa0622220-mRNA-1
chr4_2 CDS 74585757 74585884 74585757 ID=Msa0622220-mRNA-1:cds;Parent=Msa0622220-mRNA-1
chr4_2 CDS 74586020 74586254 74586020 ID=Msa0622220-mRNA-1:cds;Parent=Msa0622220-mRNA-1
chr4_2 three_prime_UTR 74586255 74586675 74586255 ID=Msa0622220-mRNA-1:three_prime_utr;Parent=Msa0622220-mRNA-1
Gene Sequence

>Msa0622220

ATGATGGAGTCTTGCGAGTGTATCGACACGCCTTATCCTCCAGATGAACTTCTTGTCAAGTATCAATACATCTCTGACGTTCTAATCGCACTTGCGTATTTCTCAATTCCTGTCGAACTCATTTATTTTGTTCAGAAATCTGCTTTCTTTCCATATAGATGGGTTCTTATGCAGTTTGGGGCTTTTATTGTTCTATGTGGAGCAACTCATTTTATAAATCTGTGGACATTCTCAGCTCACACGAAAGCTGTTGCTGTTGTAATGACCATCGCTAAAGTGTCGTGTGCTATTGTCTCATGTGCCACTGCACTTATGCTTGTTCATATTATTCCCGATCTGTTGAGTGTTAAAACCCGTGAGTTGTTCCTTAAGAACAAGGCGGAAGAGCTTGATAGGGAGATGGGACTTATTCTTACTCAGGAAGAAACCGGAAGACATGTGAGAATGTTGACTCATGAAATTAGGAGCACTCTTGATAGGCATACTATTCTAAAGACCACTCTTGTGGAGTTGGGTAGGACTTTAGGATTGGAGGAATGTGCACTGTGGATGCCATCAAGAAGTGGTTTGAATCTACAACTTTCTCATACTTTAACTTATCATGTACAAGTTGGTTCTACTGTGCCAACAAACCTTCCTATTGTCAATGAAGTCTTCAGTAACCCGAGAGCTATGCGTATACCACACACTTGTCCACTTGCTAGGATAAGACCTCTTGTCGGAAGATATGTGCCACCTGAAGTTGTTGCGGTTCGGGTGCCGCTTCTACATTTGTCAAATTTCCAAATTAATGATTGGCCTGAGCTTTCGGCAAAAAGTTATGCAATTATGGTTCTTATTCTCCCTACTGATAGTGCTAGAAAGTGGCGAGACCATGAGTTGGAGCTTGTCGATGTTGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCCATGCGAGCCCGGGATCAACTCATGGAACAAAACGTTGCCTTAGATTTAGCTCGGCGAGAGGCTGAAATGGCAATTCATGCTCGCAATGATTTCCTTGCAGTCATGAATCATGAAATGAGAACACCGATGCATGCAATTATAGCATTGTCATCACTTCTTTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACTGTATTGAAGAGTAGTAATGTTTTGGCAGCACTTATCAATGATGTTCTAGATCTGTCCCGACTGGAAGATGGTAGCCTTGAATTAGAAATGGCAAAAATCAACCTTCATGGTGTTTTGGGAGAGGTCATTGAACTGATTAAGCCTATAGCATCTGTGAAAAAACTACCCATTACTTTAATTCTTGCCCCTGATCTACCTACTCATGCCATCGGTGATGAAAAGCGGCTTATGCAGACACTTTTGAATGTTGTGGGCAATGCTGTCAAATATACTAAGGAGGGCTATGTTTCTATAAGAGCTTCTGTTGCAAAACCAGAATCCTTACAGGATTGGCGACCTCCTGAGTTTTATCCAGCATCAAGTGATGGTCATTTCTATATACGAGTCCAGGTTAAGGATTCTGGATGTGGCATTCTACCACAAGATATTCCACATCTCTTTACCAAGTTTACTCAGTCTCAGAGTGGACCTGTTCGATCTAGCAGTGGTTCAGGTCTTGGACTAGCTATTTGTAAAAGATTTGTAAATCTCATGGGTGGGCACATATGGATGGAGAGCGAGGGTCACGATAAAGGAAGCACAGCTACATTTGTAGTCAAACTTGGGATTTGTGGCAATGCAGATCCATCCGATCATCAAGCTGCAAGCAGAGGCCAAGCATATAGTGGAAGTGGAGGCCTTGCTAGATTTAAGCACTTACTCAATGATGACGACATAGGTTTTTCTAATAGACGCAATCAAAGAAGTTTCTGA
Protein sequence

>Msa0622220

MMESCECIDTPYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSAHTKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVPTNLPIVNEVFSNPRAMRIPHTCPLARIRPLVGRYVPPEVVAVRVPLLHLSNFQINDWPELSAKSYAIMVLILPTDSARKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLAALINDVLDLSRLEDGSLELEMAKINLHGVLGEVIELIKPIASVKKLPITLILAPDLPTHAIGDEKRLMQTLLNVVGNAVKYTKEGYVSIRASVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGILPQDIPHLFTKFTQSQSGPVRSSSGSGLGLAICKRFVNLMGGHIWMESEGHDKGSTATFVVKLGICGNADPSDHQAASRGQAYSGSGGLARFKHLLNDDDIGFSNRRNQRSF*