AlfalfaGEDB | Msa0184650

M. sativa cultivar zhongmu-4 / Msa0184650

KEGG: K02957
GO: -
PFAM: PF00410.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184650	KAF5467254.1	99.231	130	1	0	1	130	36	165	4.84e-90	268

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184650	sp\|P42798\|R15A1_ARATH	98.462	130	2	0	1	130	1	130	5.02e-92	265

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184650	I3SJY8	100.000	130	0	0	1	130	1	130	2.36e-90	267

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0087910	Msa0184650	0.845006	5.313931e-59	-8.615850e-47
Msa0114600	Msa0184650	0.814605	1.414666e-51	-8.615850e-47
Msa0122290	Msa0184650	0.822316	2.528736e-53	-8.615850e-47
Msa0129130	Msa0184650	0.817016	4.103082e-52	-8.615850e-47
Msa0184650	Msa0222730	0.841840	3.722773e-58	-8.615850e-47
Msa0184650	Msa0223950	0.847535	1.087437e-59	-8.615850e-47
Msa0184650	Msa0250820	0.857010	2.184060e-62	-8.615850e-47
Msa0184650	Msa0250870	0.850533	1.597189e-60	-8.615850e-47
Msa0184650	Msa0264010	0.872221	3.757874e-67	-8.615850e-47
Msa0184650	Msa0265200	0.808359	3.219934e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184650	MtrunA17_Chr4g0051921	100.000	130	0	1	130	1	130	4.54e-94	267
Msa0184650	MtrunA17_Chr1g0205971	100.000	130	0	1	130	1	130	4.54e-94	267
Msa0184650	MtrunA17_Chr4g0065831	99.231	130	1	1	130	1	130	2.23e-93	265
Msa0184650	MtrunA17_Chr8g0389371	52.000	125	60	6	130	5	129	7.69e-46	145

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184650	AT5G59850.1	98.462	130	2	1	130	1	130	5.10e-93	265
Msa0184650	AT1G07770.2	98.462	130	2	1	130	1	130	5.10e-93	265
Msa0184650	AT1G07770.3	98.462	130	2	1	130	1	130	5.10e-93	265
Msa0184650	AT1G07770.1	98.462	130	2	1	130	1	130	5.10e-93	265
Msa0184650	AT3G46040.1	96.923	130	4	1	130	1	130	1.15e-91	261
Msa0184650	AT2G39590.1	91.538	130	11	1	130	1	130	4.79e-87	249
Msa0184650	AT4G29430.1	54.400	125	57	6	130	5	129	1.57e-47	149
Msa0184650	AT2G19720.1	53.600	125	58	6	130	5	129	1.77e-45	144

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Find 41 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTCGTCGAATTGAA+TGG	0.519692	1_4:+74216025	Msa0184650:CDS
AAATTCTCAACATATGAAAT+TGG	0.297912	1_4:-74217415	None:intergenic
AATGGTAGATTGAACAAGTG+TGG	0.659687	1_4:+74216043	Msa0184650:CDS
AATGTTGGTGGTAAAGTGTT+GGG	0.506719	1_4:+74217363	Msa0184650:CDS
ACCACCAACATTCTTTCTCC+TGG	0.414976	1_4:-74217352	None:intergenic
AGATTGAAGGATGGACTGCT+AGG	0.524175	1_4:+74216101	Msa0184650:CDS
AGCAGCTTACACAATTTCTC+TGG	0.488633	1_4:+74215591	Msa0184650:five_prime_UTR
AGTGATTATCAAATTCCTTA+TGG	0.311584	1_4:+74215826	Msa0184650:CDS
ATGATCCATGATACCAGCAG+AGG	0.644078	1_4:-74217322	None:intergenic
ATGGATATTGTAATCTGGAT+AGG	0.490423	1_4:+74217477	Msa0184650:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTTGATTCATGTAGGATT+AGG	+	chr1_4:74215890-74215909	Msa0184650:intron	30.0%
TTTGTGTTTGTAGGATACAT+TGG	+	chr1_4:74215968-74215987	Msa0184650:intron	30.0%
TTGTGTTTGTAGGATACATT+GGG	+	chr1_4:74215969-74215988	Msa0184650:intron	30.0%
AAAATTGTCGTCGAATTGAA+TGG	+	chr1_4:74216025-74216044	Msa0184650:CDS	30.0%
AGAACTTATGAAATCAGCTA+TGG	+	chr1_4:74216319-74216338	Msa0184650:intron	30.0%
AAAAAAGCTGACAAAAGCTT+GGG	-	chr1_4:74216352-74216371	None:intergenic	30.0%
AAAAAAAGCTGACAAAAGCT+TGG	-	chr1_4:74216353-74216372	None:intergenic	30.0%
TCCTGGAATACCTTTATATT+AGG	+	chr1_4:74216639-74216658	Msa0184650:intron	30.0%
ACCTTTATATTAGGCCTAAT+AGG	+	chr1_4:74216648-74216667	Msa0184650:intron	30.0%
CCCTTCTTATTATGCTTTAA+TGG	+	chr1_4:74216970-74216989	Msa0184650:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	74215513	74217666	74215513	ID=Msa0184650;Name=Msa0184650
chr1_4	mRNA	74215513	74217666	74215513	ID=Msa0184650-mRNA-1;Parent=Msa0184650;Name=Msa0184650-mRNA-1;_AED=0.17;_eAED=0.17;_QI=105\|1\|1\|1\|0.5\|0.2\|5\|234\|130
chr1_4	exon	74215513	74215612	74215513	ID=Msa0184650-mRNA-1:exon:25289;Parent=Msa0184650-mRNA-1
chr1_4	exon	74215726	74215863	74215726	ID=Msa0184650-mRNA-1:exon:25290;Parent=Msa0184650-mRNA-1
chr1_4	exon	74215981	74216141	74215981	ID=Msa0184650-mRNA-1:exon:25291;Parent=Msa0184650-mRNA-1
chr1_4	exon	74217300	74217552	74217300	ID=Msa0184650-mRNA-1:exon:25292;Parent=Msa0184650-mRNA-1
chr1_4	exon	74217587	74217666	74217587	ID=Msa0184650-mRNA-1:exon:25293;Parent=Msa0184650-mRNA-1
chr1_4	five_prime_UTR	74215513	74215612	74215513	ID=Msa0184650-mRNA-1:five_prime_utr;Parent=Msa0184650-mRNA-1
chr1_4	five_prime_UTR	74215726	74215730	74215726	ID=Msa0184650-mRNA-1:five_prime_utr;Parent=Msa0184650-mRNA-1
chr1_4	CDS	74215731	74215863	74215731	ID=Msa0184650-mRNA-1:cds;Parent=Msa0184650-mRNA-1
chr1_4	CDS	74215981	74216141	74215981	ID=Msa0184650-mRNA-1:cds;Parent=Msa0184650-mRNA-1
chr1_4	CDS	74217300	74217398	74217300	ID=Msa0184650-mRNA-1:cds;Parent=Msa0184650-mRNA-1
chr1_4	three_prime_UTR	74217399	74217552	74217399	ID=Msa0184650-mRNA-1:three_prime_utr;Parent=Msa0184650-mRNA-1
chr1_4	three_prime_UTR	74217587	74217666	74217587	ID=Msa0184650-mRNA-1:three_prime_utr;Parent=Msa0184650-mRNA-1

Gene Sequence

>Msa0184650

ATGGTGAGGGTTAGTGTTTTGAACGATGCACTCAAGAGCATGTACAATGCTGAGAAACGTGGAAAGCGTCAAGTTATGATTAGGCCATCCTCAAAAGTGATTATCAAATTCCTTATGGTCATGCAAAAGCATGGATACATTGGGGAGTTTGAATATGTCGATGATCACAGGTCTGGCAAAATTGTCGTCGAATTGAATGGTAGATTGAACAAGTGTGGTGTTATTAGTCCTCGTTTTGATGTTGGTGTCAAAGAGATTGAAGGATGGACTGCTAGGCTTCTTCCCTCAAGACAGTTTGGGTATATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCCAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTTTTCTATTAG

Protein sequence

>Msa0184650

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*