Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184650 | KAF5467254.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 36 | 165 | 4.84e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184650 | sp|P42798|R15A1_ARATH | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.02e-92 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184650 | I3SJY8 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 2.36e-90 | 267 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087910 | Msa0184650 | 0.845006 | 5.313931e-59 | -8.615850e-47 |
| Msa0114600 | Msa0184650 | 0.814605 | 1.414666e-51 | -8.615850e-47 |
| Msa0122290 | Msa0184650 | 0.822316 | 2.528736e-53 | -8.615850e-47 |
| Msa0129130 | Msa0184650 | 0.817016 | 4.103082e-52 | -8.615850e-47 |
| Msa0184650 | Msa0222730 | 0.841840 | 3.722773e-58 | -8.615850e-47 |
| Msa0184650 | Msa0223950 | 0.847535 | 1.087437e-59 | -8.615850e-47 |
| Msa0184650 | Msa0250820 | 0.857010 | 2.184060e-62 | -8.615850e-47 |
| Msa0184650 | Msa0250870 | 0.850533 | 1.597189e-60 | -8.615850e-47 |
| Msa0184650 | Msa0264010 | 0.872221 | 3.757874e-67 | -8.615850e-47 |
| Msa0184650 | Msa0265200 | 0.808359 | 3.219934e-50 | -8.615850e-47 |
| Msa0184650 | Msa0342850 | 0.874998 | 4.356830e-68 | -8.615850e-47 |
| Msa0184650 | Msa0426250 | 0.804648 | 1.952791e-49 | -8.615850e-47 |
| Msa0184650 | Msa0554210 | 0.807966 | 3.904427e-50 | -8.615850e-47 |
| Msa0184650 | Msa0557720 | 0.844427 | 7.612407e-59 | -8.615850e-47 |
| Msa0184650 | Msa0691330 | 0.801188 | 1.012812e-48 | -8.615850e-47 |
| Msa0184650 | Msa0801220 | 0.803122 | 4.053380e-49 | -8.615850e-47 |
| Msa0184650 | Msa0848240 | 0.813872 | 2.053782e-51 | -8.615850e-47 |
| Msa0184650 | Msa0979060 | 0.809823 | 1.563791e-50 | -8.615850e-47 |
| Msa0184650 | Msa1050100 | 0.805218 | 1.484497e-49 | -8.615850e-47 |
| Msa0184650 | Msa1079920 | 0.900510 | 6.813281e-78 | -8.615850e-47 |
| Msa0184650 | Msa1124850 | 0.875098 | 4.025323e-68 | -8.615850e-47 |
| Msa0184650 | Msa1128120 | 0.895136 | 1.275810e-75 | -8.615850e-47 |
| Msa0184650 | Msa1295150 | 0.824020 | 1.012048e-53 | -8.615850e-47 |
| Msa0184650 | Msa1295170 | 0.860731 | 1.684132e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184650 | MtrunA17_Chr4g0051921 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 4.54e-94 | 267 |
| Msa0184650 | MtrunA17_Chr1g0205971 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 4.54e-94 | 267 |
| Msa0184650 | MtrunA17_Chr4g0065831 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.23e-93 | 265 |
| Msa0184650 | MtrunA17_Chr8g0389371 | 52.000 | 125 | 60 | 0 | 6 | 130 | 5 | 129 | 7.69e-46 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184650 | AT5G59850.1 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.10e-93 | 265 |
| Msa0184650 | AT1G07770.2 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.10e-93 | 265 |
| Msa0184650 | AT1G07770.3 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.10e-93 | 265 |
| Msa0184650 | AT1G07770.1 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.10e-93 | 265 |
| Msa0184650 | AT3G46040.1 | 96.923 | 130 | 4 | 0 | 1 | 130 | 1 | 130 | 1.15e-91 | 261 |
| Msa0184650 | AT2G39590.1 | 91.538 | 130 | 11 | 0 | 1 | 130 | 1 | 130 | 4.79e-87 | 249 |
| Msa0184650 | AT4G29430.1 | 54.400 | 125 | 57 | 0 | 6 | 130 | 5 | 129 | 1.57e-47 | 149 |
| Msa0184650 | AT2G19720.1 | 53.600 | 125 | 58 | 0 | 6 | 130 | 5 | 129 | 1.77e-45 | 144 |
Find 41 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACTAACTAAAGAATTATT+TGG | 0.203202 | 1_4:-74217648 | None:intergenic |
| GTTGAGGCACTGGCGGAATT+AGG | 0.264861 | 1_4:-74215555 | None:intergenic |
| AAATTCTCAACATATGAAAT+TGG | 0.297912 | 1_4:-74217415 | None:intergenic |
| AGTGATTATCAAATTCCTTA+TGG | 0.311584 | 1_4:+74215826 | Msa0184650:CDS |
| CTAAGAAACTATTATGCTCT+TGG | 0.348622 | 1_4:+74217583 | Msa0184650:intron |
| TTGTGTTTGTAGGATACATT+GGG | 0.378729 | 1_4:+74215969 | Msa0184650:intron |
| TTTACATGGATATTGTAATC+TGG | 0.380843 | 1_4:+74217472 | Msa0184650:three_prime_UTR |
| TTGAGGCACTGGCGGAATTA+GGG | 0.392088 | 1_4:-74215554 | None:intergenic |
| GACTACCTCTGCTGGTATCA+TGG | 0.414748 | 1_4:+74217317 | Msa0184650:CDS |
| ACCACCAACATTCTTTCTCC+TGG | 0.414976 | 1_4:-74217352 | None:intergenic |
| CTGTCTCTGCGTTGAGGCAC+TGG | 0.420787 | 1_4:-74215565 | None:intergenic |
| TGGAGAAGAAGAACGGAGTC+CGG | 0.435798 | 1_4:-74215530 | None:intergenic |
| GAAAGCGTCAAGTTATGATT+AGG | 0.452540 | 1_4:+74215792 | Msa0184650:CDS |
| TTTGTGTTTGTAGGATACAT+TGG | 0.464282 | 1_4:+74215968 | Msa0184650:intron |
| GGAGAAGAAGAACGGAGTCC+GGG | 0.484397 | 1_4:-74215529 | None:intergenic |
| AGCAGCTTACACAATTTCTC+TGG | 0.488633 | 1_4:+74215591 | Msa0184650:five_prime_UTR |
| ATGGATATTGTAATCTGGAT+AGG | 0.490423 | 1_4:+74217477 | Msa0184650:three_prime_UTR |
| AATGTTGGTGGTAAAGTGTT+GGG | 0.506719 | 1_4:+74217363 | Msa0184650:CDS |
| TTGAATATGTCGATGATCAC+AGG | 0.509301 | 1_4:+74215996 | Msa0184650:CDS |
| AAAATTGTCGTCGAATTGAA+TGG | 0.519692 | 1_4:+74216025 | Msa0184650:CDS |
| GGCACTGGCGGAATTAGGGT+TGG | 0.523043 | 1_4:-74215550 | None:intergenic |
| AGATTGAAGGATGGACTGCT+AGG | 0.524175 | 1_4:+74216101 | Msa0184650:CDS |
| ATTGTCTTGACTACCTCTGC+TGG | 0.534592 | 1_4:+74217309 | Msa0184650:CDS |
| GAATGTTGGTGGTAAAGTGT+TGG | 0.537027 | 1_4:+74217362 | Msa0184650:CDS |
| TTAGGGTTGGAGAAGAAGAA+CGG | 0.545337 | 1_4:-74215537 | None:intergenic |
| TATGTCGATGATCACAGGTC+TGG | 0.547616 | 1_4:+74216001 | Msa0184650:CDS |
| TCATGGATCATGAAGAGGCC+AGG | 0.549802 | 1_4:+74217334 | Msa0184650:CDS |
| TAGGCTTCTTCCCTCAAGAC+AGG | 0.576488 | 1_4:+74216120 | Msa0184650:CDS |
| GCCAGGAGAAAGAATGTTGG+TGG | 0.584787 | 1_4:+74217351 | Msa0184650:CDS |
| TCTCTGCGTTGAGGCACTGG+CGG | 0.590324 | 1_4:-74215562 | None:intergenic |
| GTTGGTGTCAAAGAGATTGA+AGG | 0.610557 | 1_4:+74216088 | Msa0184650:CDS |
| CTTATGGTCATGCAAAAGCA+TGG | 0.625786 | 1_4:+74215842 | Msa0184650:CDS |
| ATGATCCATGATACCAGCAG+AGG | 0.644078 | 1_4:-74217322 | None:intergenic |
| TGTGTTTGTAGGATACATTG+GGG | 0.648921 | 1_4:+74215970 | Msa0184650:intron |
| TGGTATCATGGATCATGAAG+AGG | 0.653772 | 1_4:+74217329 | Msa0184650:CDS |
| GAGGCCAGGAGAAAGAATGT+TGG | 0.655684 | 1_4:+74217348 | Msa0184650:CDS |
| GCTACACTGTCTCTGCGTTG+AGG | 0.657183 | 1_4:-74215571 | None:intergenic |
| AATGGTAGATTGAACAAGTG+TGG | 0.659687 | 1_4:+74216043 | Msa0184650:CDS |
| GTGTCAAAGAGATTGAAGGA+TGG | 0.661917 | 1_4:+74216092 | Msa0184650:CDS |
| ATGTACAATGCTGAGAAACG+TGG | 0.686253 | 1_4:+74215770 | Msa0184650:CDS |
| TTGACACCAACATCAAAACG+AGG | 0.729538 | 1_4:-74216076 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAATATTAAAAGAT+GGG | - | chr1_4:74217084-74217103 | None:intergenic | 10.0% |
| !! | TAAATGAAAATATTAAAAGA+TGG | - | chr1_4:74217085-74217104 | None:intergenic | 10.0% |
| !! | AAATGAAAATATTAAAAGAT+GGG | - | chr1_4:74217084-74217103 | None:intergenic | 10.0% |
| !! | TAAATGAAAATATTAAAAGA+TGG | - | chr1_4:74217085-74217104 | None:intergenic | 10.0% |
| !! | CTATAAAACAAACTTAAATA+AGG | - | chr1_4:74216471-74216490 | None:intergenic | 15.0% |
| !! | TAAACATTACAATTGAATAA+TGG | - | chr1_4:74217136-74217155 | None:intergenic | 15.0% |
| !!! | CAGTTTTTTTTTTTTTTACA+TGG | + | chr1_4:74217458-74217477 | Msa0184650:three_prime_UTR | 15.0% |
| !! | CTATAAAACAAACTTAAATA+AGG | - | chr1_4:74216471-74216490 | None:intergenic | 15.0% |
| !! | TAAACATTACAATTGAATAA+TGG | - | chr1_4:74217136-74217155 | None:intergenic | 15.0% |
| !!! | CAGTTTTTTTTTTTTTTACA+TGG | + | chr1_4:74217458-74217477 | Msa0184650:three_prime_UTR | 15.0% |
| !! | AAATCAAAGAAATTCAGAAA+GGG | - | chr1_4:74215634-74215653 | None:intergenic | 20.0% |
| !! | ATTTATTGTTTGATTCATGT+AGG | + | chr1_4:74215884-74215903 | Msa0184650:intron | 20.0% |
| !! | CAAATTTATAAGACAAAACT+CGG | - | chr1_4:74216158-74216177 | None:intergenic | 20.0% |
| !!! | TCAAACTACTAACATTTTTA+TGG | - | chr1_4:74216191-74216210 | None:intergenic | 20.0% |
| !!! | TGATAGTTTAATTTACATGA+TGG | + | chr1_4:74216208-74216227 | Msa0184650:intron | 20.0% |
| !! | TCAAATAAGTTAATCCAAAT+AGG | - | chr1_4:74216262-74216281 | None:intergenic | 20.0% |
| !!! | CTTTCTAATTTATTTGCTTT+TGG | + | chr1_4:74216615-74216634 | Msa0184650:intron | 20.0% |
| !! | ATTAGAAATGATTCATGATT+AGG | - | chr1_4:74216852-74216871 | None:intergenic | 20.0% |
| !! | AAAATATTAAAAGATGGGAT+AGG | - | chr1_4:74217079-74217098 | None:intergenic | 20.0% |
| !! | TGTAATGTTTATATACTTGT+CGG | + | chr1_4:74217145-74217164 | Msa0184650:intron | 20.0% |
| !! | AAATTCTCAACATATGAAAT+TGG | - | chr1_4:74217418-74217437 | None:intergenic | 20.0% |
| !!! | TTTTGTGCTAAATTGAATTT+TGG | + | chr1_4:74217530-74217549 | Msa0184650:three_prime_UTR | 20.0% |
| !!! | TTTGTGCTAAATTGAATTTT+GGG | + | chr1_4:74217531-74217550 | Msa0184650:three_prime_UTR | 20.0% |
| !! | AAATCAAAGAAATTCAGAAA+GGG | - | chr1_4:74215634-74215653 | None:intergenic | 20.0% |
| !! | ATTTATTGTTTGATTCATGT+AGG | + | chr1_4:74215884-74215903 | Msa0184650:intron | 20.0% |
| !! | CAAATTTATAAGACAAAACT+CGG | - | chr1_4:74216158-74216177 | None:intergenic | 20.0% |
| !!! | TCAAACTACTAACATTTTTA+TGG | - | chr1_4:74216191-74216210 | None:intergenic | 20.0% |
| !!! | TGATAGTTTAATTTACATGA+TGG | + | chr1_4:74216208-74216227 | Msa0184650:intron | 20.0% |
| !! | TCAAATAAGTTAATCCAAAT+AGG | - | chr1_4:74216262-74216281 | None:intergenic | 20.0% |
| !!! | CTTTCTAATTTATTTGCTTT+TGG | + | chr1_4:74216615-74216634 | Msa0184650:intron | 20.0% |
| !! | ATTAGAAATGATTCATGATT+AGG | - | chr1_4:74216852-74216871 | None:intergenic | 20.0% |
| !! | AAAATATTAAAAGATGGGAT+AGG | - | chr1_4:74217079-74217098 | None:intergenic | 20.0% |
| !! | TGTAATGTTTATATACTTGT+CGG | + | chr1_4:74217145-74217164 | Msa0184650:intron | 20.0% |
| !! | AAATTCTCAACATATGAAAT+TGG | - | chr1_4:74217418-74217437 | None:intergenic | 20.0% |
| !!! | TTTTGTGCTAAATTGAATTT+TGG | + | chr1_4:74217530-74217549 | Msa0184650:three_prime_UTR | 20.0% |
| !!! | TTTGTGCTAAATTGAATTTT+GGG | + | chr1_4:74217531-74217550 | Msa0184650:three_prime_UTR | 20.0% |
| ! | CAAATCAAAGAAATTCAGAA+AGG | - | chr1_4:74215635-74215654 | None:intergenic | 25.0% |
| ! | CTTTCTGAATTTCTTTGATT+TGG | + | chr1_4:74215633-74215652 | Msa0184650:intron | 25.0% |
| !!! | GAAATGTTTTAGAGAAAAGA+TGG | + | chr1_4:74215712-74215731 | Msa0184650:intron | 25.0% |
| !!! | GAATTTGATAATCACTTTTG+AGG | - | chr1_4:74215822-74215841 | None:intergenic | 25.0% |
| ! | AGTGATTATCAAATTCCTTA+TGG | + | chr1_4:74215826-74215845 | Msa0184650:CDS | 25.0% |
| !! | TTGTATACTTTTGTGTTTGT+AGG | + | chr1_4:74215959-74215978 | Msa0184650:intron | 25.0% |
| ! | TTGTTTGTTTCCTTATTATG+TGG | + | chr1_4:74216573-74216592 | Msa0184650:intron | 25.0% |
| ! | TGTTCTATTTCCACATAATA+AGG | - | chr1_4:74216586-74216605 | None:intergenic | 25.0% |
| !!! | CTAATAGGCTTTTAAAACTT+GGG | + | chr1_4:74216663-74216682 | Msa0184650:intron | 25.0% |
| !! | TTAGTAGGCTTTTAAATCTT+GGG | + | chr1_4:74216690-74216709 | Msa0184650:intron | 25.0% |
| ! | CTGACTTATACTTCATATAT+TGG | + | chr1_4:74216758-74216777 | Msa0184650:intron | 25.0% |
| ! | TAAATTCAAACCGTTCTTTA+TGG | + | chr1_4:74216881-74216900 | Msa0184650:intron | 25.0% |
| ! | ATAGATGATAGTCAAATAGT+CGG | - | chr1_4:74216942-74216961 | None:intergenic | 25.0% |
| ! | CCATTAAAGCATAATAAGAA+GGG | - | chr1_4:74216973-74216992 | None:intergenic | 25.0% |
| ! | CCTTCTTATTATGCTTTAAT+GGG | + | chr1_4:74216971-74216990 | Msa0184650:intron | 25.0% |
| ! | CTTCTTATTATGCTTTAATG+GGG | + | chr1_4:74216972-74216991 | Msa0184650:intron | 25.0% |
| ! | AATTGAATAATGGTTGCAAA+AGG | - | chr1_4:74217126-74217145 | None:intergenic | 25.0% |
| ! | TTTACATGGATATTGTAATC+TGG | + | chr1_4:74217472-74217491 | Msa0184650:three_prime_UTR | 25.0% |
| !!! | AATTGAATTTTGGGTAATCT+TGG | + | chr1_4:74217540-74217559 | Msa0184650:intron | 25.0% |
| ! | CAAATCAAAGAAATTCAGAA+AGG | - | chr1_4:74215635-74215654 | None:intergenic | 25.0% |
| ! | CTTTCTGAATTTCTTTGATT+TGG | + | chr1_4:74215633-74215652 | Msa0184650:intron | 25.0% |
| !!! | GAAATGTTTTAGAGAAAAGA+TGG | + | chr1_4:74215712-74215731 | Msa0184650:intron | 25.0% |
| !!! | GAATTTGATAATCACTTTTG+AGG | - | chr1_4:74215822-74215841 | None:intergenic | 25.0% |
| ! | AGTGATTATCAAATTCCTTA+TGG | + | chr1_4:74215826-74215845 | Msa0184650:CDS | 25.0% |
| !! | TTGTATACTTTTGTGTTTGT+AGG | + | chr1_4:74215959-74215978 | Msa0184650:intron | 25.0% |
| ! | TTGTTTGTTTCCTTATTATG+TGG | + | chr1_4:74216573-74216592 | Msa0184650:intron | 25.0% |
| ! | TGTTCTATTTCCACATAATA+AGG | - | chr1_4:74216586-74216605 | None:intergenic | 25.0% |
| !!! | CTAATAGGCTTTTAAAACTT+GGG | + | chr1_4:74216663-74216682 | Msa0184650:intron | 25.0% |
| !! | TTAGTAGGCTTTTAAATCTT+GGG | + | chr1_4:74216690-74216709 | Msa0184650:intron | 25.0% |
| ! | CTGACTTATACTTCATATAT+TGG | + | chr1_4:74216758-74216777 | Msa0184650:intron | 25.0% |
| ! | TAAATTCAAACCGTTCTTTA+TGG | + | chr1_4:74216881-74216900 | Msa0184650:intron | 25.0% |
| ! | ATAGATGATAGTCAAATAGT+CGG | - | chr1_4:74216942-74216961 | None:intergenic | 25.0% |
| ! | CCATTAAAGCATAATAAGAA+GGG | - | chr1_4:74216973-74216992 | None:intergenic | 25.0% |
| ! | CCTTCTTATTATGCTTTAAT+GGG | + | chr1_4:74216971-74216990 | Msa0184650:intron | 25.0% |
| ! | CTTCTTATTATGCTTTAATG+GGG | + | chr1_4:74216972-74216991 | Msa0184650:intron | 25.0% |
| ! | AATTGAATAATGGTTGCAAA+AGG | - | chr1_4:74217126-74217145 | None:intergenic | 25.0% |
| ! | TTTACATGGATATTGTAATC+TGG | + | chr1_4:74217472-74217491 | Msa0184650:three_prime_UTR | 25.0% |
| !!! | AATTGAATTTTGGGTAATCT+TGG | + | chr1_4:74217540-74217559 | Msa0184650:intron | 25.0% |
| !! | TTTTAGAGAAAAGATGGTGA+GGG | + | chr1_4:74215718-74215737 | Msa0184650:intron | 30.0% |
| !! | TTGATAATCACTTTTGAGGA+TGG | - | chr1_4:74215818-74215837 | None:intergenic | 30.0% |
| TGTTTGATTCATGTAGGATT+AGG | + | chr1_4:74215890-74215909 | Msa0184650:intron | 30.0% | |
| TTTGTGTTTGTAGGATACAT+TGG | + | chr1_4:74215968-74215987 | Msa0184650:intron | 30.0% | |
| TTGTGTTTGTAGGATACATT+GGG | + | chr1_4:74215969-74215988 | Msa0184650:intron | 30.0% | |
| AAAATTGTCGTCGAATTGAA+TGG | + | chr1_4:74216025-74216044 | Msa0184650:CDS | 30.0% | |
| ! | ATCCATTGACATAAGTTTTG+TGG | + | chr1_4:74216286-74216305 | Msa0184650:intron | 30.0% |
| !! | TCCATTGACATAAGTTTTGT+GGG | + | chr1_4:74216287-74216306 | Msa0184650:intron | 30.0% |
| AGAACTTATGAAATCAGCTA+TGG | + | chr1_4:74216319-74216338 | Msa0184650:intron | 30.0% | |
| AAAAAAGCTGACAAAAGCTT+GGG | - | chr1_4:74216352-74216371 | None:intergenic | 30.0% | |
| AAAAAAAGCTGACAAAAGCT+TGG | - | chr1_4:74216353-74216372 | None:intergenic | 30.0% | |
| !!! | ATTTATTTGCTTTTGGTTCC+TGG | + | chr1_4:74216622-74216641 | Msa0184650:intron | 30.0% |
| TCCTGGAATACCTTTATATT+AGG | + | chr1_4:74216639-74216658 | Msa0184650:intron | 30.0% | |
| ACCTTTATATTAGGCCTAAT+AGG | + | chr1_4:74216648-74216667 | Msa0184650:intron | 30.0% | |
| !!! | CCAAGTTTTAAAAGCCTATT+AGG | - | chr1_4:74216665-74216684 | None:intergenic | 30.0% |
| !!! | CCTAATAGGCTTTTAAAACT+TGG | + | chr1_4:74216662-74216681 | Msa0184650:intron | 30.0% |
| ! | GTTAGTAGGCTTTTAAATCT+TGG | + | chr1_4:74216689-74216708 | Msa0184650:intron | 30.0% |
| !! | TTTAAATCTTGGGTTGGAAT+TGG | + | chr1_4:74216700-74216719 | Msa0184650:intron | 30.0% |
| CCCTTCTTATTATGCTTTAA+TGG | + | chr1_4:74216970-74216989 | Msa0184650:intron | 30.0% | |
| CCCATTAAAGCATAATAAGA+AGG | - | chr1_4:74216974-74216993 | None:intergenic | 30.0% | |
| GTTTCATTTGATCTTTCTTG+TGG | + | chr1_4:74217250-74217269 | Msa0184650:intron | 30.0% | |
| !! | CATGATTTTAGCAACAGTTA+GGG | - | chr1_4:74217277-74217296 | None:intergenic | 30.0% |
| TTGCTAAAATCATGCAGTTT+GGG | + | chr1_4:74217283-74217302 | Msa0184650:intron | 30.0% | |
| !!! | AGTGTTGGGTTTTTTCTATT+AGG | + | chr1_4:74217377-74217396 | Msa0184650:CDS | 30.0% |
| !!! | GTGTTGGGTTTTTTCTATTA+GGG | + | chr1_4:74217378-74217397 | Msa0184650:CDS | 30.0% |
| !! | AGAATTTTGAGTGTTTGTGA+TGG | + | chr1_4:74217431-74217450 | Msa0184650:three_prime_UTR | 30.0% |
| ATGGATATTGTAATCTGGAT+AGG | + | chr1_4:74217477-74217496 | Msa0184650:three_prime_UTR | 30.0% | |
| CTAAGAAACTATTATGCTCT+TGG | + | chr1_4:74217583-74217602 | Msa0184650:intron | 30.0% | |
| !!! | CAATTTTGAAACACAAGCTA+GGG | - | chr1_4:74217610-74217629 | None:intergenic | 30.0% |
| !!! | ACAATTTTGAAACACAAGCT+AGG | - | chr1_4:74217611-74217630 | None:intergenic | 30.0% |
| !! | TTTTAGAGAAAAGATGGTGA+GGG | + | chr1_4:74215718-74215737 | Msa0184650:intron | 30.0% |
| !! | TTGATAATCACTTTTGAGGA+TGG | - | chr1_4:74215818-74215837 | None:intergenic | 30.0% |
| TGTTTGATTCATGTAGGATT+AGG | + | chr1_4:74215890-74215909 | Msa0184650:intron | 30.0% | |
| TTTGTGTTTGTAGGATACAT+TGG | + | chr1_4:74215968-74215987 | Msa0184650:intron | 30.0% | |
| TTGTGTTTGTAGGATACATT+GGG | + | chr1_4:74215969-74215988 | Msa0184650:intron | 30.0% | |
| AAAATTGTCGTCGAATTGAA+TGG | + | chr1_4:74216025-74216044 | Msa0184650:CDS | 30.0% | |
| ! | ATCCATTGACATAAGTTTTG+TGG | + | chr1_4:74216286-74216305 | Msa0184650:intron | 30.0% |
| !! | TCCATTGACATAAGTTTTGT+GGG | + | chr1_4:74216287-74216306 | Msa0184650:intron | 30.0% |
| AGAACTTATGAAATCAGCTA+TGG | + | chr1_4:74216319-74216338 | Msa0184650:intron | 30.0% | |
| AAAAAAGCTGACAAAAGCTT+GGG | - | chr1_4:74216352-74216371 | None:intergenic | 30.0% | |
| AAAAAAAGCTGACAAAAGCT+TGG | - | chr1_4:74216353-74216372 | None:intergenic | 30.0% | |
| !!! | ATTTATTTGCTTTTGGTTCC+TGG | + | chr1_4:74216622-74216641 | Msa0184650:intron | 30.0% |
| TCCTGGAATACCTTTATATT+AGG | + | chr1_4:74216639-74216658 | Msa0184650:intron | 30.0% | |
| ACCTTTATATTAGGCCTAAT+AGG | + | chr1_4:74216648-74216667 | Msa0184650:intron | 30.0% | |
| !!! | CCAAGTTTTAAAAGCCTATT+AGG | - | chr1_4:74216665-74216684 | None:intergenic | 30.0% |
| !!! | CCTAATAGGCTTTTAAAACT+TGG | + | chr1_4:74216662-74216681 | Msa0184650:intron | 30.0% |
| ! | GTTAGTAGGCTTTTAAATCT+TGG | + | chr1_4:74216689-74216708 | Msa0184650:intron | 30.0% |
| !! | TTTAAATCTTGGGTTGGAAT+TGG | + | chr1_4:74216700-74216719 | Msa0184650:intron | 30.0% |
| CCCTTCTTATTATGCTTTAA+TGG | + | chr1_4:74216970-74216989 | Msa0184650:intron | 30.0% | |
| CCCATTAAAGCATAATAAGA+AGG | - | chr1_4:74216974-74216993 | None:intergenic | 30.0% | |
| GTTTCATTTGATCTTTCTTG+TGG | + | chr1_4:74217250-74217269 | Msa0184650:intron | 30.0% | |
| !! | CATGATTTTAGCAACAGTTA+GGG | - | chr1_4:74217277-74217296 | None:intergenic | 30.0% |
| TTGCTAAAATCATGCAGTTT+GGG | + | chr1_4:74217283-74217302 | Msa0184650:intron | 30.0% | |
| !!! | AGTGTTGGGTTTTTTCTATT+AGG | + | chr1_4:74217377-74217396 | Msa0184650:CDS | 30.0% |
| !!! | GTGTTGGGTTTTTTCTATTA+GGG | + | chr1_4:74217378-74217397 | Msa0184650:CDS | 30.0% |
| !! | AGAATTTTGAGTGTTTGTGA+TGG | + | chr1_4:74217431-74217450 | Msa0184650:three_prime_UTR | 30.0% |
| ATGGATATTGTAATCTGGAT+AGG | + | chr1_4:74217477-74217496 | Msa0184650:three_prime_UTR | 30.0% | |
| CTAAGAAACTATTATGCTCT+TGG | + | chr1_4:74217583-74217602 | Msa0184650:intron | 30.0% | |
| !!! | CAATTTTGAAACACAAGCTA+GGG | - | chr1_4:74217610-74217629 | None:intergenic | 30.0% |
| !!! | ACAATTTTGAAACACAAGCT+AGG | - | chr1_4:74217611-74217630 | None:intergenic | 30.0% |
| !!! | GTTTTAGAGAAAAGATGGTG+AGG | + | chr1_4:74215717-74215736 | Msa0184650:intron | 35.0% |
| !! | GAAAGCGTCAAGTTATGATT+AGG | + | chr1_4:74215792-74215811 | Msa0184650:CDS | 35.0% |
| TGTGTTTGTAGGATACATTG+GGG | + | chr1_4:74215970-74215989 | Msa0184650:intron | 35.0% | |
| TTGAATATGTCGATGATCAC+AGG | + | chr1_4:74215996-74216015 | Msa0184650:CDS | 35.0% | |
| AATGGTAGATTGAACAAGTG+TGG | + | chr1_4:74216043-74216062 | Msa0184650:CDS | 35.0% | |
| !! | ATTAGTCCTCGTTTTGATGT+TGG | + | chr1_4:74216070-74216089 | Msa0184650:CDS | 35.0% |
| TCCCACAAAACTTATGTCAA+TGG | - | chr1_4:74216291-74216310 | None:intergenic | 35.0% | |
| !! | ATAAGTTTTGTGGGACTGTT+TGG | + | chr1_4:74216296-74216315 | Msa0184650:intron | 35.0% |
| TATAGTTCCTAACTATCGAG+TGG | + | chr1_4:74216486-74216505 | Msa0184650:intron | 35.0% | |
| !! | GCCTAATATAAAGGTATTCC+AGG | - | chr1_4:74216643-74216662 | None:intergenic | 35.0% |
| GCCTATTAGGCCTAATATAA+AGG | - | chr1_4:74216652-74216671 | None:intergenic | 35.0% | |
| !!! | TAGGCTTTTAAAACTTGGGT+TGG | + | chr1_4:74216667-74216686 | Msa0184650:intron | 35.0% |
| !! | TAAAACTTGGGTTGGTTAGT+AGG | + | chr1_4:74216675-74216694 | Msa0184650:intron | 35.0% |
| ! | TAGGCTTTTAAATCTTGGGT+TGG | + | chr1_4:74216694-74216713 | Msa0184650:intron | 35.0% |
| CTTAAGTGAGTGAAACATCT+GGG | - | chr1_4:74216806-74216825 | None:intergenic | 35.0% | |
| CAGATGTTTCACTCACTTAA+GGG | + | chr1_4:74216805-74216824 | Msa0184650:intron | 35.0% | |
| TTCAAACCGTTCTTTATGGT+TGG | + | chr1_4:74216885-74216904 | Msa0184650:intron | 35.0% | |
| TCAAACCGTTCTTTATGGTT+GGG | + | chr1_4:74216886-74216905 | Msa0184650:intron | 35.0% | |
| ATACACCCAACCATAAAGAA+CGG | - | chr1_4:74216894-74216913 | None:intergenic | 35.0% | |
| CTTATTATGCTTTAATGGGG+TGG | + | chr1_4:74216975-74216994 | Msa0184650:intron | 35.0% | |
| ACAAGCAACATAACATTCGA+TGG | - | chr1_4:74217228-74217247 | None:intergenic | 35.0% | |
| !! | GCATGATTTTAGCAACAGTT+AGG | - | chr1_4:74217278-74217297 | None:intergenic | 35.0% |
| GTTGCTAAAATCATGCAGTT+TGG | + | chr1_4:74217282-74217301 | Msa0184650:intron | 35.0% | |
| !! | AATGTTGGTGGTAAAGTGTT+GGG | + | chr1_4:74217363-74217382 | Msa0184650:CDS | 35.0% |
| !!! | GTTTTAGAGAAAAGATGGTG+AGG | + | chr1_4:74215717-74215736 | Msa0184650:intron | 35.0% |
| !! | GAAAGCGTCAAGTTATGATT+AGG | + | chr1_4:74215792-74215811 | Msa0184650:CDS | 35.0% |
| TGTGTTTGTAGGATACATTG+GGG | + | chr1_4:74215970-74215989 | Msa0184650:intron | 35.0% | |
| TTGAATATGTCGATGATCAC+AGG | + | chr1_4:74215996-74216015 | Msa0184650:CDS | 35.0% | |
| AATGGTAGATTGAACAAGTG+TGG | + | chr1_4:74216043-74216062 | Msa0184650:CDS | 35.0% | |
| !! | ATTAGTCCTCGTTTTGATGT+TGG | + | chr1_4:74216070-74216089 | Msa0184650:CDS | 35.0% |
| TCCCACAAAACTTATGTCAA+TGG | - | chr1_4:74216291-74216310 | None:intergenic | 35.0% | |
| !! | ATAAGTTTTGTGGGACTGTT+TGG | + | chr1_4:74216296-74216315 | Msa0184650:intron | 35.0% |
| TATAGTTCCTAACTATCGAG+TGG | + | chr1_4:74216486-74216505 | Msa0184650:intron | 35.0% | |
| !! | GCCTAATATAAAGGTATTCC+AGG | - | chr1_4:74216643-74216662 | None:intergenic | 35.0% |
| GCCTATTAGGCCTAATATAA+AGG | - | chr1_4:74216652-74216671 | None:intergenic | 35.0% | |
| !!! | TAGGCTTTTAAAACTTGGGT+TGG | + | chr1_4:74216667-74216686 | Msa0184650:intron | 35.0% |
| !! | TAAAACTTGGGTTGGTTAGT+AGG | + | chr1_4:74216675-74216694 | Msa0184650:intron | 35.0% |
| ! | TAGGCTTTTAAATCTTGGGT+TGG | + | chr1_4:74216694-74216713 | Msa0184650:intron | 35.0% |
| CTTAAGTGAGTGAAACATCT+GGG | - | chr1_4:74216806-74216825 | None:intergenic | 35.0% | |
| CAGATGTTTCACTCACTTAA+GGG | + | chr1_4:74216805-74216824 | Msa0184650:intron | 35.0% | |
| TTCAAACCGTTCTTTATGGT+TGG | + | chr1_4:74216885-74216904 | Msa0184650:intron | 35.0% | |
| TCAAACCGTTCTTTATGGTT+GGG | + | chr1_4:74216886-74216905 | Msa0184650:intron | 35.0% | |
| ATACACCCAACCATAAAGAA+CGG | - | chr1_4:74216894-74216913 | None:intergenic | 35.0% | |
| CTTATTATGCTTTAATGGGG+TGG | + | chr1_4:74216975-74216994 | Msa0184650:intron | 35.0% | |
| ACAAGCAACATAACATTCGA+TGG | - | chr1_4:74217228-74217247 | None:intergenic | 35.0% | |
| !! | GCATGATTTTAGCAACAGTT+AGG | - | chr1_4:74217278-74217297 | None:intergenic | 35.0% |
| GTTGCTAAAATCATGCAGTT+TGG | + | chr1_4:74217282-74217301 | Msa0184650:intron | 35.0% | |
| !! | AATGTTGGTGGTAAAGTGTT+GGG | + | chr1_4:74217363-74217382 | Msa0184650:CDS | 35.0% |
| TTAGGGTTGGAGAAGAAGAA+CGG | - | chr1_4:74215540-74215559 | None:intergenic | 40.0% | |
| AGCAGCTTACACAATTTCTC+TGG | + | chr1_4:74215591-74215610 | Msa0184650:five_prime_UTR | 40.0% | |
| ATGTACAATGCTGAGAAACG+TGG | + | chr1_4:74215770-74215789 | Msa0184650:CDS | 40.0% | |
| ! | CATGCTTTTGCATGACCATA+AGG | - | chr1_4:74215844-74215863 | None:intergenic | 40.0% |
| CTTATGGTCATGCAAAAGCA+TGG | + | chr1_4:74215842-74215861 | Msa0184650:CDS | 40.0% | |
| ! | TCATGCAAAAGCATGGTATG+TGG | + | chr1_4:74215849-74215868 | Msa0184650:intron | 40.0% |
| !! | GTAGGATTAGGCTTTGTTAC+TGG | + | chr1_4:74215902-74215921 | Msa0184650:intron | 40.0% |
| TTGACACCAACATCAAAACG+AGG | - | chr1_4:74216079-74216098 | None:intergenic | 40.0% | |
| !! | GTTGGTGTCAAAGAGATTGA+AGG | + | chr1_4:74216088-74216107 | Msa0184650:CDS | 40.0% |
| GTGTCAAAGAGATTGAAGGA+TGG | + | chr1_4:74216092-74216111 | Msa0184650:CDS | 40.0% | |
| !! | TTTTAGCTGACCTGTCTTGA+GGG | - | chr1_4:74216133-74216152 | None:intergenic | 40.0% |
| !!! | TTTTTAGCTGACCTGTCTTG+AGG | - | chr1_4:74216134-74216153 | None:intergenic | 40.0% |
| ATGATATGTGCTTCTGCTAC+AGG | + | chr1_4:74216445-74216464 | Msa0184650:intron | 40.0% | |
| AGAATGACCACTCGATAGTT+AGG | - | chr1_4:74216496-74216515 | None:intergenic | 40.0% | |
| CCTTAAGTGAGTGAAACATC+TGG | - | chr1_4:74216807-74216826 | None:intergenic | 40.0% | |
| CCAGATGTTTCACTCACTTA+AGG | + | chr1_4:74216804-74216823 | Msa0184650:intron | 40.0% | |
| CACTCACTTAAGGGACTATT+TGG | + | chr1_4:74216814-74216833 | Msa0184650:intron | 40.0% | |
| ATAGTCGGTATGCATAGAGT+GGG | - | chr1_4:74216927-74216946 | None:intergenic | 40.0% | |
| AATAGTCGGTATGCATAGAG+TGG | - | chr1_4:74216928-74216947 | None:intergenic | 40.0% | |
| GGTGGACGTAGAATATTCAT+TGG | + | chr1_4:74216993-74217012 | Msa0184650:intron | 40.0% | |
| CTGAAGTTGCTATCATCATC+TGG | + | chr1_4:74217198-74217217 | Msa0184650:intron | 40.0% | |
| TGGTATCATGGATCATGAAG+AGG | + | chr1_4:74217329-74217348 | Msa0184650:CDS | 40.0% | |
| !! | GAATGTTGGTGGTAAAGTGT+TGG | + | chr1_4:74217362-74217381 | Msa0184650:CDS | 40.0% |
| TTAGGGTTGGAGAAGAAGAA+CGG | - | chr1_4:74215540-74215559 | None:intergenic | 40.0% | |
| AGCAGCTTACACAATTTCTC+TGG | + | chr1_4:74215591-74215610 | Msa0184650:five_prime_UTR | 40.0% | |
| ATGTACAATGCTGAGAAACG+TGG | + | chr1_4:74215770-74215789 | Msa0184650:CDS | 40.0% | |
| ! | CATGCTTTTGCATGACCATA+AGG | - | chr1_4:74215844-74215863 | None:intergenic | 40.0% |
| CTTATGGTCATGCAAAAGCA+TGG | + | chr1_4:74215842-74215861 | Msa0184650:CDS | 40.0% | |
| ! | TCATGCAAAAGCATGGTATG+TGG | + | chr1_4:74215849-74215868 | Msa0184650:intron | 40.0% |
| !! | GTAGGATTAGGCTTTGTTAC+TGG | + | chr1_4:74215902-74215921 | Msa0184650:intron | 40.0% |
| TTGACACCAACATCAAAACG+AGG | - | chr1_4:74216079-74216098 | None:intergenic | 40.0% | |
| !! | GTTGGTGTCAAAGAGATTGA+AGG | + | chr1_4:74216088-74216107 | Msa0184650:CDS | 40.0% |
| GTGTCAAAGAGATTGAAGGA+TGG | + | chr1_4:74216092-74216111 | Msa0184650:CDS | 40.0% | |
| !! | TTTTAGCTGACCTGTCTTGA+GGG | - | chr1_4:74216133-74216152 | None:intergenic | 40.0% |
| !!! | TTTTTAGCTGACCTGTCTTG+AGG | - | chr1_4:74216134-74216153 | None:intergenic | 40.0% |
| ATGATATGTGCTTCTGCTAC+AGG | + | chr1_4:74216445-74216464 | Msa0184650:intron | 40.0% | |
| AGAATGACCACTCGATAGTT+AGG | - | chr1_4:74216496-74216515 | None:intergenic | 40.0% | |
| CCTTAAGTGAGTGAAACATC+TGG | - | chr1_4:74216807-74216826 | None:intergenic | 40.0% | |
| CCAGATGTTTCACTCACTTA+AGG | + | chr1_4:74216804-74216823 | Msa0184650:intron | 40.0% | |
| CACTCACTTAAGGGACTATT+TGG | + | chr1_4:74216814-74216833 | Msa0184650:intron | 40.0% | |
| ATAGTCGGTATGCATAGAGT+GGG | - | chr1_4:74216927-74216946 | None:intergenic | 40.0% | |
| AATAGTCGGTATGCATAGAG+TGG | - | chr1_4:74216928-74216947 | None:intergenic | 40.0% | |
| GGTGGACGTAGAATATTCAT+TGG | + | chr1_4:74216993-74217012 | Msa0184650:intron | 40.0% | |
| CTGAAGTTGCTATCATCATC+TGG | + | chr1_4:74217198-74217217 | Msa0184650:intron | 40.0% | |
| TGGTATCATGGATCATGAAG+AGG | + | chr1_4:74217329-74217348 | Msa0184650:CDS | 40.0% | |
| !! | GAATGTTGGTGGTAAAGTGT+TGG | + | chr1_4:74217362-74217381 | Msa0184650:CDS | 40.0% |
| ! | ACGGAGTCCGGGTTTTTATT+CGG | - | chr1_4:74215521-74215540 | None:intergenic | 45.0% |
| ! | GCAAAAGCATGGTATGTGGT+TGG | + | chr1_4:74215853-74215872 | Msa0184650:intron | 45.0% |
| TATGTCGATGATCACAGGTC+TGG | + | chr1_4:74216001-74216020 | Msa0184650:CDS | 45.0% | |
| !! | AGATTGAAGGATGGACTGCT+AGG | + | chr1_4:74216101-74216120 | Msa0184650:CDS | 45.0% |
| TAGTGCACAATATGCGTCTC+TGG | + | chr1_4:74216235-74216254 | Msa0184650:intron | 45.0% | |
| AGTGCACAATATGCGTCTCT+GGG | + | chr1_4:74216236-74216255 | Msa0184650:intron | 45.0% | |
| TCAAGACTCCAACGTCAATG+TGG | - | chr1_4:74216527-74216546 | None:intergenic | 45.0% | |
| !! | ATCTTGGGTTGGAATTGGAG+AGG | + | chr1_4:74216705-74216724 | Msa0184650:intron | 45.0% |
| !! | TCTTGGGTTGGAATTGGAGA+GGG | + | chr1_4:74216706-74216725 | Msa0184650:intron | 45.0% |
| AGGGGTTAACCAGAACAATC+CGG | + | chr1_4:74216725-74216744 | Msa0184650:intron | 45.0% | |
| !! | ATAAGTCAGAGAAGCACTGC+CGG | - | chr1_4:74216747-74216766 | None:intergenic | 45.0% |
| ATTGTCTTGACTACCTCTGC+TGG | + | chr1_4:74217309-74217328 | Msa0184650:CDS | 45.0% | |
| ATGATCCATGATACCAGCAG+AGG | - | chr1_4:74217325-74217344 | None:intergenic | 45.0% | |
| ACCACCAACATTCTTTCTCC+TGG | - | chr1_4:74217355-74217374 | None:intergenic | 45.0% | |
| ! | ACGGAGTCCGGGTTTTTATT+CGG | - | chr1_4:74215521-74215540 | None:intergenic | 45.0% |
| ! | GCAAAAGCATGGTATGTGGT+TGG | + | chr1_4:74215853-74215872 | Msa0184650:intron | 45.0% |
| TATGTCGATGATCACAGGTC+TGG | + | chr1_4:74216001-74216020 | Msa0184650:CDS | 45.0% | |
| !! | AGATTGAAGGATGGACTGCT+AGG | + | chr1_4:74216101-74216120 | Msa0184650:CDS | 45.0% |
| TAGTGCACAATATGCGTCTC+TGG | + | chr1_4:74216235-74216254 | Msa0184650:intron | 45.0% | |
| AGTGCACAATATGCGTCTCT+GGG | + | chr1_4:74216236-74216255 | Msa0184650:intron | 45.0% | |
| TCAAGACTCCAACGTCAATG+TGG | - | chr1_4:74216527-74216546 | None:intergenic | 45.0% | |
| !! | ATCTTGGGTTGGAATTGGAG+AGG | + | chr1_4:74216705-74216724 | Msa0184650:intron | 45.0% |
| !! | TCTTGGGTTGGAATTGGAGA+GGG | + | chr1_4:74216706-74216725 | Msa0184650:intron | 45.0% |
| AGGGGTTAACCAGAACAATC+CGG | + | chr1_4:74216725-74216744 | Msa0184650:intron | 45.0% | |
| !! | ATAAGTCAGAGAAGCACTGC+CGG | - | chr1_4:74216747-74216766 | None:intergenic | 45.0% |
| ATTGTCTTGACTACCTCTGC+TGG | + | chr1_4:74217309-74217328 | Msa0184650:CDS | 45.0% | |
| ATGATCCATGATACCAGCAG+AGG | - | chr1_4:74217325-74217344 | None:intergenic | 45.0% | |
| ACCACCAACATTCTTTCTCC+TGG | - | chr1_4:74217355-74217374 | None:intergenic | 45.0% | |
| TGGAGAAGAAGAACGGAGTC+CGG | - | chr1_4:74215533-74215552 | None:intergenic | 50.0% | |
| !! | TTGAGGCACTGGCGGAATTA+GGG | - | chr1_4:74215557-74215576 | None:intergenic | 50.0% |
| TAGGCTTCTTCCCTCAAGAC+AGG | + | chr1_4:74216120-74216139 | Msa0184650:CDS | 50.0% | |
| TATGCGTCTCTGGGCCTATT+TGG | + | chr1_4:74216245-74216264 | Msa0184650:intron | 50.0% | |
| TTTGCGCACCACATTGACGT+TGG | + | chr1_4:74216516-74216535 | Msa0184650:intron | 50.0% | |
| !! | CTTGGGTTGGAATTGGAGAG+GGG | + | chr1_4:74216707-74216726 | Msa0184650:intron | 50.0% |
| GACTACCTCTGCTGGTATCA+TGG | + | chr1_4:74217317-74217336 | Msa0184650:CDS | 50.0% | |
| TCATGGATCATGAAGAGGCC+AGG | + | chr1_4:74217334-74217353 | Msa0184650:CDS | 50.0% | |
| GAGGCCAGGAGAAAGAATGT+TGG | + | chr1_4:74217348-74217367 | Msa0184650:CDS | 50.0% | |
| GCCAGGAGAAAGAATGTTGG+TGG | + | chr1_4:74217351-74217370 | Msa0184650:CDS | 50.0% | |
| TGGAGAAGAAGAACGGAGTC+CGG | - | chr1_4:74215533-74215552 | None:intergenic | 50.0% | |
| !! | TTGAGGCACTGGCGGAATTA+GGG | - | chr1_4:74215557-74215576 | None:intergenic | 50.0% |
| TAGGCTTCTTCCCTCAAGAC+AGG | + | chr1_4:74216120-74216139 | Msa0184650:CDS | 50.0% | |
| TATGCGTCTCTGGGCCTATT+TGG | + | chr1_4:74216245-74216264 | Msa0184650:intron | 50.0% | |
| TTTGCGCACCACATTGACGT+TGG | + | chr1_4:74216516-74216535 | Msa0184650:intron | 50.0% | |
| !! | CTTGGGTTGGAATTGGAGAG+GGG | + | chr1_4:74216707-74216726 | Msa0184650:intron | 50.0% |
| GACTACCTCTGCTGGTATCA+TGG | + | chr1_4:74217317-74217336 | Msa0184650:CDS | 50.0% | |
| TCATGGATCATGAAGAGGCC+AGG | + | chr1_4:74217334-74217353 | Msa0184650:CDS | 50.0% | |
| GAGGCCAGGAGAAAGAATGT+TGG | + | chr1_4:74217348-74217367 | Msa0184650:CDS | 50.0% | |
| GCCAGGAGAAAGAATGTTGG+TGG | + | chr1_4:74217351-74217370 | Msa0184650:CDS | 50.0% | |
| GGAGAAGAAGAACGGAGTCC+GGG | - | chr1_4:74215532-74215551 | None:intergenic | 55.0% | |
| !! | GTTGAGGCACTGGCGGAATT+AGG | - | chr1_4:74215558-74215577 | None:intergenic | 55.0% |
| GCTACACTGTCTCTGCGTTG+AGG | - | chr1_4:74215574-74215593 | None:intergenic | 55.0% | |
| !! | GAAGCACTGCCGGATTGTTC+TGG | - | chr1_4:74216737-74216756 | None:intergenic | 55.0% |
| GGAGAAGAAGAACGGAGTCC+GGG | - | chr1_4:74215532-74215551 | None:intergenic | 55.0% | |
| !! | GTTGAGGCACTGGCGGAATT+AGG | - | chr1_4:74215558-74215577 | None:intergenic | 55.0% |
| GCTACACTGTCTCTGCGTTG+AGG | - | chr1_4:74215574-74215593 | None:intergenic | 55.0% | |
| !! | GAAGCACTGCCGGATTGTTC+TGG | - | chr1_4:74216737-74216756 | None:intergenic | 55.0% |
| !! | GGCACTGGCGGAATTAGGGT+TGG | - | chr1_4:74215553-74215572 | None:intergenic | 60.0% |
| !! | TCTCTGCGTTGAGGCACTGG+CGG | - | chr1_4:74215565-74215584 | None:intergenic | 60.0% |
| CTGTCTCTGCGTTGAGGCAC+TGG | - | chr1_4:74215568-74215587 | None:intergenic | 60.0% | |
| !! | GGCACTGGCGGAATTAGGGT+TGG | - | chr1_4:74215553-74215572 | None:intergenic | 60.0% |
| !! | TCTCTGCGTTGAGGCACTGG+CGG | - | chr1_4:74215565-74215584 | None:intergenic | 60.0% |
| CTGTCTCTGCGTTGAGGCAC+TGG | - | chr1_4:74215568-74215587 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 74215513 | 74217666 | 74215513 | ID=Msa0184650;Name=Msa0184650 |
| chr1_4 | mRNA | 74215513 | 74217666 | 74215513 | ID=Msa0184650-mRNA-1;Parent=Msa0184650;Name=Msa0184650-mRNA-1;_AED=0.17;_eAED=0.17;_QI=105|1|1|1|0.5|0.2|5|234|130 |
| chr1_4 | exon | 74215513 | 74215612 | 74215513 | ID=Msa0184650-mRNA-1:exon:25289;Parent=Msa0184650-mRNA-1 |
| chr1_4 | exon | 74215726 | 74215863 | 74215726 | ID=Msa0184650-mRNA-1:exon:25290;Parent=Msa0184650-mRNA-1 |
| chr1_4 | exon | 74215981 | 74216141 | 74215981 | ID=Msa0184650-mRNA-1:exon:25291;Parent=Msa0184650-mRNA-1 |
| chr1_4 | exon | 74217300 | 74217552 | 74217300 | ID=Msa0184650-mRNA-1:exon:25292;Parent=Msa0184650-mRNA-1 |
| chr1_4 | exon | 74217587 | 74217666 | 74217587 | ID=Msa0184650-mRNA-1:exon:25293;Parent=Msa0184650-mRNA-1 |
| chr1_4 | five_prime_UTR | 74215513 | 74215612 | 74215513 | ID=Msa0184650-mRNA-1:five_prime_utr;Parent=Msa0184650-mRNA-1 |
| chr1_4 | five_prime_UTR | 74215726 | 74215730 | 74215726 | ID=Msa0184650-mRNA-1:five_prime_utr;Parent=Msa0184650-mRNA-1 |
| chr1_4 | CDS | 74215731 | 74215863 | 74215731 | ID=Msa0184650-mRNA-1:cds;Parent=Msa0184650-mRNA-1 |
| chr1_4 | CDS | 74215981 | 74216141 | 74215981 | ID=Msa0184650-mRNA-1:cds;Parent=Msa0184650-mRNA-1 |
| chr1_4 | CDS | 74217300 | 74217398 | 74217300 | ID=Msa0184650-mRNA-1:cds;Parent=Msa0184650-mRNA-1 |
| chr1_4 | three_prime_UTR | 74217399 | 74217552 | 74217399 | ID=Msa0184650-mRNA-1:three_prime_utr;Parent=Msa0184650-mRNA-1 |
| chr1_4 | three_prime_UTR | 74217587 | 74217666 | 74217587 | ID=Msa0184650-mRNA-1:three_prime_utr;Parent=Msa0184650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
