AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0839570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0839570 MtrunA17_Chr5g0407811 98.280 407 7 0 3 409 2 408 0.0 817
Msa0839570 MtrunA17_Chr1g0168531 96.049 405 16 0 5 409 47 451 0.0 753
Msa0839570 MtrunA17_Chr1g0181761 94.059 404 24 0 6 409 2 405 0.0 744
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0839570 AT3G09630.1 82.963 405 69 0 5 409 2 406 0.0 692
Msa0839570 AT3G09630.2 82.716 405 69 1 5 409 2 405 0.0 686
Msa0839570 AT5G02870.1 81.975 405 73 0 5 409 3 407 0.0 682
Msa0839570 AT5G02870.2 81.728 405 73 1 5 409 3 406 0.0 675

Find 169 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAATTGGATTCGATTTA+TGG 0.106859 5_4:+14617166 Msa0839570:CDS
AAGGGACCGTTGATTGTTTA+TGG 0.170065 5_4:+14617004 Msa0839570:CDS
CTCTTAACATCCTTCTTAAT+TGG 0.181814 5_4:-14617304 None:intergenic
TTATCTGAACTAAATAATTT+TGG 0.199263 5_4:+14619648 Msa0839570:three_prime_UTR
GAAAACTAAGGAGGCTATTA+AGG 0.230890 5_4:+14616877 Msa0839570:CDS
GCTTGCACCGGGTGGGCATT+TGG 0.242314 5_4:+14617111 Msa0839570:CDS
ATAGCGAGGCACCACAATTT+TGG 0.264332 5_4:+14619909 Msa0839570:three_prime_UTR
CGGTGGACATTTCCGATTCT+AGG 0.271462 5_4:-14616418 None:intergenic
AACTATGGCGAACATATAAA+TGG 0.273513 5_4:-14619613 None:intergenic
ATTCCTCATCTTCCCCTTCC+CGG 0.277492 5_4:-14616963 None:intergenic
CGTGCTGGTCAGGCTGCTTT+TGG 0.280197 5_4:+14616647 Msa0839570:CDS
CCTGAGTTTCCTCTTGTTGT+TGG 0.285780 5_4:+14616833 Msa0839570:CDS
AATTTGACAACTTCTCTAAA+TGG 0.287943 5_4:+14619569 Msa0839570:CDS
GCTGCTGCTGCGGCGGCCAT+TGG 0.294478 5_4:-14616365 None:intergenic
GCAGAAACTCAATATATCTT+TGG 0.294542 5_4:-14620054 None:intergenic
AGCTTCTGCTATTCCTTCAT+TGG 0.305726 5_4:+14616778 Msa0839570:CDS
AGGTTTGGTGACCAGCTTTC+CGG 0.324392 5_4:-14616556 None:intergenic
CTTGCACCGGGTGGGCATTT+GGG 0.333428 5_4:+14617112 Msa0839570:CDS
AGCTTTCCCTGCAGCCTTGA+TGG 0.333710 5_4:-14619509 None:intergenic
TGGTTCTTGCTCGTGGTCAT+AGG 0.345540 5_4:+14616798 Msa0839570:CDS
GAGATGAATACAATGTGTTT+TGG 0.353712 5_4:-14616249 None:intergenic
AGAAATTGGATTCGATTTAT+GGG 0.370066 5_4:+14617167 Msa0839570:CDS
TGGAAGGGTTGTTGGTGAAT+CGG 0.372776 5_4:-14616438 None:intergenic
ATTTGGGTAGGTTTGTGATT+TGG 0.373636 5_4:+14617128 Msa0839570:CDS
GCTGCTGCGGCGGCCATTGG+TGG 0.376380 5_4:-14616362 None:intergenic
TCACGTATCCCTCGTGTTGC+TGG 0.377052 5_4:+14616611 Msa0839570:CDS
AACTCAATATATCTTTGGTT+TGG 0.378578 5_4:-14620049 None:intergenic
ACATTTCCGATTCTAGGGTT+TGG 0.381003 5_4:-14616412 None:intergenic
CTCTTAGCAGTCTTGGCATA+AGG 0.381657 5_4:-14617382 None:intergenic
GATTTATGGGTCGTTTGATA+AGG 0.391731 5_4:+14617180 Msa0839570:CDS
CCCATGATTCAGCTGAGGTT+TGG 0.398368 5_4:-14616571 None:intergenic
CTTTGCTTGCTGAGGCTGAA+AGG 0.401451 5_4:+14617410 Msa0839570:CDS
GCTGCGGCGGCCATTGGTGG+AGG 0.401489 5_4:-14616359 None:intergenic
CCACAAGGATCTGGAGGAAA+TGG 0.401682 5_4:+14616702 Msa0839570:CDS
TGGACGAAGTTGACGATGTC+AGG 0.402562 5_4:-14616491 None:intergenic
GCTGACGGCGTAAGGTTGTC+TGG 0.404851 5_4:-14616534 None:intergenic
TGAAGGGGCGAAGGCGGTTA+AGG 0.407318 5_4:+14617030 Msa0839570:CDS
GTGTAAGCCTTGCGTAGTTT+TGG 0.408233 5_4:+14619864 Msa0839570:three_prime_UTR
GAAGAGAAAGACTGTCTCTA+AGG 0.412134 5_4:+14617462 Msa0839570:CDS
TCGGGGATTGGAAGGGTTGT+TGG 0.414001 5_4:-14616446 None:intergenic
ATCCCTCGTGTTGCTGGTGG+TGG 0.419638 5_4:+14616617 Msa0839570:CDS
CATTTCCTCCAGATCCTTGT+GGG 0.422522 5_4:-14616701 None:intergenic
ACCAATCGAAAATGAGGTTA+AGG 0.422821 5_4:-14620253 None:intergenic
TGGGACCCACCGTGCTGGTC+AGG 0.423632 5_4:+14616637 Msa0839570:CDS
ATATATCTTTGGTTTGGCAC+TGG 0.425803 5_4:-14620043 None:intergenic
AGCTAGGTGCATACCTTACT+TGG 0.430184 5_4:-14619815 None:intergenic
TTCCTCATCTTCCCCTTCCC+GGG 0.435752 5_4:-14616962 None:intergenic
TGTTTGCTCCCACAAGGATC+TGG 0.440906 5_4:+14616693 Msa0839570:CDS
ATAACATTAAGATTCTTAAG+AGG 0.441145 5_4:-14617346 None:intergenic
ACCAAACCTCAGCTGAATCA+TGG 0.447157 5_4:+14616570 Msa0839570:CDS
ATTGAAGCACGCATGACATC+GGG 0.449044 5_4:-14616464 None:intergenic
CACTATCCAAACCCTAGAAT+CGG 0.457816 5_4:+14616406 Msa0839570:CDS
GGAAGGGGAAGATGAGGAAT+AGG 0.459223 5_4:+14616966 Msa0839570:CDS
TGCTGAGGCTGAAAGGGTTA+AGG 0.459340 5_4:+14617417 Msa0839570:CDS
GCATAATGTGAATCTTAAAC+CGG 0.466092 5_4:-14619685 None:intergenic
ATGCTGTCCCTGGCCAAGTA+AGG 0.466393 5_4:+14619802 Msa0839570:three_prime_UTR
ACAACTTCTCTAAATGGCTA+GGG 0.469584 5_4:+14619575 Msa0839570:CDS
TTTGCTTGCTGAGGCTGAAA+GGG 0.469665 5_4:+14617411 Msa0839570:CDS
AGCCATCCTCTTAGCAGTCT+TGG 0.471110 5_4:-14617389 None:intergenic
GCTTCTGCCATCAAGGCTGC+AGG 0.471561 5_4:+14619502 Msa0839570:CDS
TAAGGATCCTTTAAAAGTGC+TGG 0.475095 5_4:-14620235 None:intergenic
CCAAACCTCAGCTGAATCAT+GGG 0.477617 5_4:+14616571 Msa0839570:CDS
TGGGTCGTTTGATAAGGCTT+CGG 0.480693 5_4:+14617186 Msa0839570:CDS
GCTTTCCGGCTGACGGCGTA+AGG 0.484743 5_4:-14616542 None:intergenic
GCACGCATGACATCGGGGAT+TGG 0.488868 5_4:-14616458 None:intergenic
GTGACCAGCTTTCCGGCTGA+CGG 0.489052 5_4:-14616549 None:intergenic
AGAATCTTAATGTTATGCTC+AGG 0.492457 5_4:+14617353 Msa0839570:CDS
TACGCCGTCAGCCGGAAAGC+TGG 0.492481 5_4:+14616545 Msa0839570:CDS
TAAGGTATGCACCTAGCTAT+CGG 0.496967 5_4:+14619820 Msa0839570:three_prime_UTR
CACCGGGTGGGCATTTGGGT+AGG 0.501033 5_4:+14617116 Msa0839570:CDS
TGAAAGGGTTAAGGCTAAGA+AGG 0.502198 5_4:+14617426 Msa0839570:CDS
GGTGGACATTTCCGATTCTA+GGG 0.503679 5_4:-14616417 None:intergenic
TTTCTTCCTCCCTCCACCAA+TGG 0.505861 5_4:+14616349 Msa0839570:exon
TCAAGGCTGCAGGGAAAGCT+TGG 0.505941 5_4:+14619512 Msa0839570:CDS
GAAAAGGCCAAGGATAGCCT+TGG 0.508889 5_4:+14616932 Msa0839570:CDS
GACAACCTTACGCCGTCAGC+CGG 0.509508 5_4:+14616537 Msa0839570:CDS
GTTGTTGGTGATGCTGCTGA+AGG 0.512772 5_4:+14616848 Msa0839570:CDS
GACAACTTCTCTAAATGGCT+AGG 0.516462 5_4:+14619574 Msa0839570:CDS
AAGGTATGCACCTAGCTATC+GGG 0.517073 5_4:+14619821 Msa0839570:three_prime_UTR
TTGATTGTTTATGGTACTGA+AGG 0.517929 5_4:+14617013 Msa0839570:CDS
GGTGGTGGGACCCACCGTGC+TGG 0.518839 5_4:+14616632 Msa0839570:CDS
CTGCGGCGGCCATTGGTGGA+GGG 0.520408 5_4:-14616358 None:intergenic
TAGGCGATATATATCGCGTA+AGG 0.520552 5_4:+14616985 Msa0839570:CDS
GCATGACATCGGGGATTGGA+AGG 0.520572 5_4:-14616454 None:intergenic
GAGGATGGCTTTGCTTGCTG+AGG 0.523283 5_4:+14617402 Msa0839570:CDS
GGAGGAAGCTTCTGCCATCA+AGG 0.523621 5_4:+14619495 Msa0839570:intron
TCTAATCCCAAGGCTATCCT+TGG 0.524268 5_4:-14616939 None:intergenic
GATACGTGAAACAGCACGTC+CGG 0.525790 5_4:-14616597 None:intergenic
TTGGGATTAGACCCGGGAAG+GGG 0.526474 5_4:+14616951 Msa0839570:CDS
AATTTGTTATATGCTGTCCC+TGG 0.527625 5_4:+14619792 Msa0839570:three_prime_UTR
CAATTAAGAAGGATGTTAAG+AGG 0.528802 5_4:+14617305 Msa0839570:CDS
GGTGCATACCTTACTTGGCC+AGG 0.528908 5_4:-14619810 None:intergenic
CCATTTCCTCCAGATCCTTG+TGG 0.531420 5_4:-14616702 None:intergenic
GGGAGGAAGAAACACTAGCT+AGG 0.532621 5_4:-14616338 None:intergenic
TGATTGTTTATGGTACTGAA+GGG 0.536027 5_4:+14617014 Msa0839570:CDS
CCTTCATTGGTTCTTGCTCG+TGG 0.536411 5_4:+14616791 Msa0839570:CDS
TGCTGATGCTGAAAAGGCCA+AGG 0.537379 5_4:+14616922 Msa0839570:CDS
TCAACTACAATATGTAGCAC+AGG 0.538236 5_4:-14619977 None:intergenic
AAAAGGCCAAGGATAGCCTT+GGG 0.538830 5_4:+14616933 Msa0839570:CDS
TGGTGAATTCTGATTTGACT+AGG 0.539110 5_4:+14617245 Msa0839570:CDS
TGTTGTGAGGCCAATTAAGA+AGG 0.543329 5_4:+14617294 Msa0839570:CDS
AAGGCTTCGGAGAAGAAGAA+AGG 0.545763 5_4:+14617199 Msa0839570:CDS
CGGCGGCCATTGGTGGAGGG+AGG 0.548170 5_4:-14616355 None:intergenic
TCAGCAGACACCCGATAGCT+AGG 0.550548 5_4:-14619831 None:intergenic
AACCTACCCAAATGCCCACC+CGG 0.552263 5_4:-14617118 None:intergenic
AGCAGCCTGACCAGCACGGT+GGG 0.552373 5_4:-14616642 None:intergenic
CCTTGGGATTAGACCCGGGA+AGG 0.558086 5_4:+14616949 Msa0839570:CDS
GATTGAAGCACGCATGACAT+CGG 0.563386 5_4:-14616465 None:intergenic
CTTATGCCAAGACTGCTAAG+AGG 0.565343 5_4:+14617383 Msa0839570:CDS
CTAGGGTTTGGATAGTGACA+AGG 0.566331 5_4:-14616400 None:intergenic
GATAGCCTTGGGATTAGACC+CGG 0.567327 5_4:+14616944 Msa0839570:CDS
CTTGGGATTAGACCCGGGAA+GGG 0.569338 5_4:+14616950 Msa0839570:CDS
GAATTCACCATCTTAGCCCT+AGG 0.569796 5_4:-14617232 None:intergenic
TTATGGTACTGAAGGGGCGA+AGG 0.571791 5_4:+14617021 Msa0839570:CDS
ATATATTCCAAAACTACGCA+AGG 0.577003 5_4:-14619871 None:intergenic
TCAGCTGAATCATGGGGTAC+CGG 0.577134 5_4:+14616578 Msa0839570:CDS
CGAAGTTGACGATGTCAGGA+CGG 0.577332 5_4:-14616487 None:intergenic
TGAAGGAGTAGAGAAAACTA+AGG 0.578428 5_4:+14616865 Msa0839570:CDS
CCTTCCCGGGTCTAATCCCA+AGG 0.579401 5_4:-14616949 None:intergenic
CCACGAGCAAGAACCAATGA+AGG 0.582084 5_4:-14616791 None:intergenic
ATAATCAGAATCTGAGACCA+TGG 0.582620 5_4:-14619542 None:intergenic
GGAGGAAGAAACACTAGCTA+GGG 0.583478 5_4:-14616337 None:intergenic
TTCACATTATGCAGACAGCA+TGG 0.583913 5_4:+14619696 Msa0839570:three_prime_UTR
GCAGCATCACCAACAACAAG+AGG 0.587525 5_4:-14616842 None:intergenic
TTACACTACAAAATCACAGT+GGG 0.590022 5_4:-14620108 None:intergenic
CTGCAGACCAATCGAAAATG+AGG 0.591158 5_4:-14620259 None:intergenic
CAACTTCTCTAAATGGCTAG+GGG 0.592153 5_4:+14619576 Msa0839570:CDS
GACCCGGGAAGGGGAAGATG+AGG 0.594126 5_4:+14616960 Msa0839570:CDS
TCCCTCGTGTTGCTGGTGGT+GGG 0.595574 5_4:+14616618 Msa0839570:CDS
GGATCTGGAGGAAATGGCAT+AGG 0.598192 5_4:+14616708 Msa0839570:CDS
CTTCTGCCATCAAGGCTGCA+GGG 0.598308 5_4:+14619503 Msa0839570:CDS
TGCCAAGACTGCTAAGAGGA+TGG 0.598875 5_4:+14617387 Msa0839570:CDS
TGGTGTTGAGATTACTAATG+TGG 0.599446 5_4:+14617069 Msa0839570:CDS
AATTAAGAAGGATGTTAAGA+GGG 0.600812 5_4:+14617306 Msa0839570:CDS
AGGCTTCGGAGAAGAAGAAA+GGG 0.601116 5_4:+14617200 Msa0839570:CDS
CCAACAACAAGAGGAAACTC+AGG 0.606988 5_4:-14616833 None:intergenic
GTGCATACCTTACTTGGCCA+GGG 0.608278 5_4:-14619809 None:intergenic
TCTGCAAAATCACTTTGTCA+CGG 0.609895 5_4:+14620072 Msa0839570:three_prime_UTR
GTCCCACCACCAGCAACACG+AGG 0.616153 5_4:-14616620 None:intergenic
GATTGTTTATGGTACTGAAG+GGG 0.617143 5_4:+14617015 Msa0839570:CDS
TGGTACTGAAGGGGCGAAGG+CGG 0.619937 5_4:+14617024 Msa0839570:CDS
AAGGGTTGTTGGTGAATCGG+TGG 0.620089 5_4:-14616435 None:intergenic
CAATTTATTACACAAACTAG+AGG 0.621174 5_4:-14620165 None:intergenic
CGTATCCCTCGTGTTGCTGG+TGG 0.624534 5_4:+14616614 Msa0839570:CDS
CATGACATCGGGGATTGGAA+GGG 0.626690 5_4:-14616453 None:intergenic
AGGAGTAGAGAAAACTAAGG+AGG 0.635842 5_4:+14616868 Msa0839570:CDS
GTAGAATGTTTGCTCCCACA+AGG 0.636493 5_4:+14616687 Msa0839570:CDS
TAGGGTTTGGATAGTGACAA+GGG 0.638790 5_4:-14616399 None:intergenic
TAGGATTATTAATAGTGATG+AGG 0.640452 5_4:+14617264 Msa0839570:CDS
TCAGTACCATAAACAATCAA+CGG 0.642392 5_4:-14617010 None:intergenic
CAACTACAATATGTAGCACA+GGG 0.643345 5_4:-14619976 None:intergenic
ATAGCCTTGGGATTAGACCC+GGG 0.646880 5_4:+14616945 Msa0839570:CDS
TTGCTCCCACAAGGATCTGG+AGG 0.649385 5_4:+14616696 Msa0839570:CDS
TTGAGATTACTAATGTGGAG+AGG 0.654222 5_4:+14617074 Msa0839570:CDS
GGTACCCCATGATTCAGCTG+AGG 0.655914 5_4:-14616576 None:intergenic
AGGCGATATATATCGCGTAA+GGG 0.658931 5_4:+14616986 Msa0839570:CDS
CAAAAGCAGCCTGACCAGCA+CGG 0.671346 5_4:-14616646 None:intergenic
ACATTAGTAATCTCAACACC+AGG 0.671385 5_4:-14617067 None:intergenic
AGGGTTTGGATAGTGACAAG+GGG 0.687917 5_4:-14616398 None:intergenic
TTTGGTAACATGTGTCGTGG+TGG 0.688796 5_4:+14616665 Msa0839570:CDS
TCCCACCACCAGCAACACGA+GGG 0.698370 5_4:-14616619 None:intergenic
TATTGGTAAGAATCATAGCG+AGG 0.700509 5_4:+14619895 Msa0839570:three_prime_UTR
ATTACACTACAAAATCACAG+TGG 0.701288 5_4:-14620109 None:intergenic
AAGCAGCCTGACCAGCACGG+TGG 0.701528 5_4:-14616643 None:intergenic
GAAAGCTTGGTATAACACCA+TGG 0.705586 5_4:+14619525 Msa0839570:CDS
ATGAGGTGCAGAGTGTTGTG+AGG 0.717794 5_4:+14617281 Msa0839570:CDS
TTGAAGCACGCATGACATCG+GGG 0.725773 5_4:-14616463 None:intergenic
CAAACCTCAGCTGAATCATG+GGG 0.734702 5_4:+14616572 Msa0839570:CDS
GGCAGTGTTTGAATTCACTG+TGG 0.734895 5_4:+14619951 Msa0839570:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTAAATTATTAAAGTT+TGG - chr5_4:14617882-14617901 None:intergenic 10.0%
!!! ATAATTAATAGTTTTTGATT+TGG + chr5_4:14617938-14617957 Msa0839570:intron 10.0%
!!! TAATTAATAGTTTTTGATTT+GGG + chr5_4:14617939-14617958 Msa0839570:intron 10.0%
!!! TACAAAATGTTTTTAAAATA+TGG - chr5_4:14618400-14618419 None:intergenic 10.0%
!!! ATAATTCATAGTTTTTGATT+TGG + chr5_4:14618086-14618105 Msa0839570:intron 15.0%
!!! TAATTCATAGTTTTTGATTT+GGG + chr5_4:14618087-14618106 Msa0839570:intron 15.0%
!!! TTTTTAAAATATGGTCAATT+TGG - chr5_4:14618391-14618410 None:intergenic 15.0%
!!! CAAATTTCTAAATTGATTTA+GGG + chr5_4:14618427-14618446 Msa0839570:intron 15.0%
!!! AACTTAGTTTTATTTTAATC+TGG - chr5_4:14618809-14618828 None:intergenic 15.0%
!!! AGTTTAAGACAATAATTAAA+TGG - chr5_4:14619439-14619458 None:intergenic 15.0%
!!! TTATCTGAACTAAATAATTT+TGG + chr5_4:14619648-14619667 Msa0839570:three_prime_UTR 15.0%
!!! TAGTTTTGGAATATATATAT+TGG + chr5_4:14619878-14619897 Msa0839570:three_prime_UTR 15.0%
!! ATAACATTAAGATTCTTAAG+AGG - chr5_4:14617349-14617368 None:intergenic 20.0%
!!! TTGATCATTTTATGTTGATT+TGG + chr5_4:14617639-14617658 Msa0839570:intron 20.0%
!!! ATTAAAGCACTAAATCTAAA+TGG - chr5_4:14617755-14617774 None:intergenic 20.0%
!! TTAGATTTAGTGCTTTAATT+AGG + chr5_4:14617756-14617775 Msa0839570:intron 20.0%
!!! ACAATCTCAACTTTTATATA+AGG - chr5_4:14617795-14617814 None:intergenic 20.0%
!! TTTCAACTAAAATCAAATAG+CGG - chr5_4:14618364-14618383 None:intergenic 20.0%
!! CCTAAATCAATTTAGAAATT+TGG - chr5_4:14618429-14618448 None:intergenic 20.0%
!!! CCAAATTTCTAAATTGATTT+AGG + chr5_4:14618426-14618445 Msa0839570:intron 20.0%
!!! CCTTTTTTTTTCTTGTTTTA+CGG + chr5_4:14618512-14618531 Msa0839570:intron 20.0%
!!! ATTTAGATTTGAGATTGTAA+TGG - chr5_4:14618767-14618786 None:intergenic 20.0%
!!! AATCTGGTTTGTATAATTTA+GGG - chr5_4:14618793-14618812 None:intergenic 20.0%
!!! TAATCTGGTTTGTATAATTT+AGG - chr5_4:14618794-14618813 None:intergenic 20.0%
!! CATCTTAAATTATCAAAACT+TGG + chr5_4:14618829-14618848 Msa0839570:intron 20.0%
!! ATAAAATAGTAGAGTAAACT+AGG - chr5_4:14618978-14618997 None:intergenic 20.0%
!! TCTTGCATGATAAATAATAA+GGG - chr5_4:14619022-14619041 None:intergenic 20.0%
!! TTCTTGCATGATAAATAATA+AGG - chr5_4:14619023-14619042 None:intergenic 20.0%
!!! AAGTATTTTTTAGTTGTAAG+TGG + chr5_4:14619042-14619061 Msa0839570:intron 20.0%
! AGAAATTGGATTCGATTTAT+GGG + chr5_4:14617167-14617186 Msa0839570:CDS 25.0%
! TAGGATTATTAATAGTGATG+AGG + chr5_4:14617264-14617283 Msa0839570:CDS 25.0%
! AATTAAGAAGGATGTTAAGA+GGG + chr5_4:14617306-14617325 Msa0839570:CDS 25.0%
! TTAAGACAATATAAGTGCAA+AGG - chr5_4:14618015-14618034 None:intergenic 25.0%
!!! AAATTGATTTAGGGCATTTT+AGG + chr5_4:14618436-14618455 Msa0839570:intron 25.0%
!!! AATTGATTTAGGGCATTTTA+GGG + chr5_4:14618437-14618456 Msa0839570:intron 25.0%
! CCGTAAAACAAGAAAAAAAA+AGG - chr5_4:14618515-14618534 None:intergenic 25.0%
!!! GTTCTCTATCTTTTGTTTTT+TGG + chr5_4:14618565-14618584 Msa0839570:intron 25.0%
!!! GTTTGTTTTTTGCAGAATAA+TGG + chr5_4:14619308-14619327 Msa0839570:intron 25.0%
! AATTTGACAACTTCTCTAAA+TGG + chr5_4:14619569-14619588 Msa0839570:CDS 25.0%
! TAACCACACAAAAAAAACTA+TGG - chr5_4:14619631-14619650 None:intergenic 25.0%
! AACTCAATATATCTTTGGTT+TGG - chr5_4:14620052-14620071 None:intergenic 25.0%
! CAATTTATTACACAAACTAG+AGG - chr5_4:14620168-14620187 None:intergenic 25.0%
! GAGATGAATACAATGTGTTT+TGG - chr5_4:14616252-14616271 None:intergenic 30.0%
!! AGTTTTTGGAAATGTTGGAA+TGG - chr5_4:14616514-14616533 None:intergenic 30.0%
TCAGTACCATAAACAATCAA+CGG - chr5_4:14617013-14617032 None:intergenic 30.0%
! TTGATTGTTTATGGTACTGA+AGG + chr5_4:14617013-14617032 Msa0839570:CDS 30.0%
! TGATTGTTTATGGTACTGAA+GGG + chr5_4:14617014-14617033 Msa0839570:CDS 30.0%
!! TAAGTCTGCTTTTGAGAAAT+TGG + chr5_4:14617153-14617172 Msa0839570:CDS 30.0%
GAGAAATTGGATTCGATTTA+TGG + chr5_4:14617166-14617185 Msa0839570:CDS 30.0%
CTCTTAACATCCTTCTTAAT+TGG - chr5_4:14617307-14617326 None:intergenic 30.0%
CAATTAAGAAGGATGTTAAG+AGG + chr5_4:14617305-14617324 Msa0839570:CDS 30.0%
AGAATCTTAATGTTATGCTC+AGG + chr5_4:14617353-14617372 Msa0839570:CDS 30.0%
CATTCAAAAATCAAGCACAA+TGG - chr5_4:14617502-14617521 None:intergenic 30.0%
TTTGATTCTATCGTGAAGAT+AGG + chr5_4:14617829-14617848 Msa0839570:intron 30.0%
TTAACTTCATGTGTAAGTGA+GGG + chr5_4:14617989-14618008 Msa0839570:intron 30.0%
TTAACTTCATGTGTAAGTGA+GGG + chr5_4:14617989-14618008 Msa0839570:intron 30.0%
GTAATCATAGTAGTCAATAG+TGG + chr5_4:14618231-14618250 Msa0839570:intron 30.0%
! ACCAAATAGACTTTGTTGTA+TGG + chr5_4:14618468-14618487 Msa0839570:intron 30.0%
ACCATACAACAAAGTCTATT+TGG - chr5_4:14618472-14618491 None:intergenic 30.0%
! TTTGTTTATACTCCCACTTT+TGG + chr5_4:14618676-14618695 Msa0839570:intron 30.0%
!! TTGTTTATACTCCCACTTTT+GGG + chr5_4:14618677-14618696 Msa0839570:intron 30.0%
ACATTCATTGTAGTTGATCT+CGG - chr5_4:14618725-14618744 None:intergenic 30.0%
! TTAGTTGTAAGTGGATTTGA+TGG + chr5_4:14619051-14619070 Msa0839570:intron 30.0%
AATTAATAACTGCAATTCCC+AGG - chr5_4:14619092-14619111 None:intergenic 30.0%
!!! AGTGGATGAGTTGATTTTTT+GGG + chr5_4:14619164-14619183 Msa0839570:intron 30.0%
!!! GTTGATTTTTTGGGGAATAA+TGG + chr5_4:14619173-14619192 Msa0839570:intron 30.0%
!!! GCAGAATAATGGATGAATTT+TGG + chr5_4:14619319-14619338 Msa0839570:intron 30.0%
AACTATGGCGAACATATAAA+TGG - chr5_4:14619616-14619635 None:intergenic 30.0%
GCATAATGTGAATCTTAAAC+CGG - chr5_4:14619688-14619707 None:intergenic 30.0%
ATATATTCCAAAACTACGCA+AGG - chr5_4:14619874-14619893 None:intergenic 30.0%
!!! GTAGTTTTTTGCCAAAATTG+TGG - chr5_4:14619923-14619942 None:intergenic 30.0%
TTTGGCAAAAAACTACACTT+TGG + chr5_4:14619927-14619946 Msa0839570:three_prime_UTR 30.0%
GCAGAAACTCAATATATCTT+TGG - chr5_4:14620057-14620076 None:intergenic 30.0%
TTACACTACAAAATCACAGT+GGG - chr5_4:14620111-14620130 None:intergenic 30.0%
ATTACACTACAAAATCACAG+TGG - chr5_4:14620112-14620131 None:intergenic 30.0%
!!! AAGAAGGGTTTGTTTTGTGA+TGG - chr5_4:14616276-14616295 None:intergenic 35.0%
!! TCTGGAGTTTTTGGAAATGT+TGG - chr5_4:14616519-14616538 None:intergenic 35.0%
TGAAGGAGTAGAGAAAACTA+AGG + chr5_4:14616865-14616884 Msa0839570:CDS 35.0%
GAAAACTAAGGAGGCTATTA+AGG + chr5_4:14616877-14616896 Msa0839570:CDS 35.0%
!!! ATTAAGGTTTTGAAGCAGGT+TGG + chr5_4:14616893-14616912 Msa0839570:CDS 35.0%
! GATTGTTTATGGTACTGAAG+GGG + chr5_4:14617015-14617034 Msa0839570:CDS 35.0%
!! AAGGCTTTTAGGAATATTCC+TGG + chr5_4:14617049-14617068 Msa0839570:CDS 35.0%
ACATTAGTAATCTCAACACC+AGG - chr5_4:14617070-14617089 None:intergenic 35.0%
! TGGTGTTGAGATTACTAATG+TGG + chr5_4:14617069-14617088 Msa0839570:CDS 35.0%
TTGAGATTACTAATGTGGAG+AGG + chr5_4:14617074-14617093 Msa0839570:CDS 35.0%
ATTTGGGTAGGTTTGTGATT+TGG + chr5_4:14617128-14617147 Msa0839570:CDS 35.0%
GATTTATGGGTCGTTTGATA+AGG + chr5_4:14617180-14617199 Msa0839570:CDS 35.0%
!! AGAAAGGGTATGTTTTACCT+AGG + chr5_4:14617215-14617234 Msa0839570:CDS 35.0%
!! GAAAGGGTATGTTTTACCTA+GGG + chr5_4:14617216-14617235 Msa0839570:CDS 35.0%
! TGGTGAATTCTGATTTGACT+AGG + chr5_4:14617245-14617264 Msa0839570:CDS 35.0%
!! GTTGATTTGGTATTGTTCCT+AGG + chr5_4:14617652-14617671 Msa0839570:intron 35.0%
ACTAGAACATACATCTCCTT+TGG - chr5_4:14617684-14617703 None:intergenic 35.0%
GATTTGAATTGTGATCTTGC+TGG + chr5_4:14617712-14617731 Msa0839570:intron 35.0%
ATTCTATCGTGAAGATAGGA+CGG + chr5_4:14617833-14617852 Msa0839570:intron 35.0%
! TGATTTGGGTTTGTAGTGAT+TGG + chr5_4:14617953-14617972 Msa0839570:intron 35.0%
GTTAACTTCATGTGTAAGTG+AGG + chr5_4:14617988-14618007 Msa0839570:intron 35.0%
! TGATTTGGGTTTGTAGTGAT+TGG + chr5_4:14617953-14617972 Msa0839570:intron 35.0%
GTTAACTTCATGTGTAAGTG+AGG + chr5_4:14617988-14618007 Msa0839570:intron 35.0%
AAATCAAATAGCGGCTAAAG+CGG - chr5_4:14618355-14618374 None:intergenic 35.0%
!! TGTTTATACTCCCACTTTTG+GGG + chr5_4:14618678-14618697 Msa0839570:intron 35.0%
AGTAAAGAGCAGAATATGCA+AGG - chr5_4:14618937-14618956 None:intergenic 35.0%
!!! GAGTGGATGAGTTGATTTTT+TGG + chr5_4:14619163-14619182 Msa0839570:intron 35.0%
!!! GTGGATGAGTTGATTTTTTG+GGG + chr5_4:14619165-14619184 Msa0839570:intron 35.0%
! AGAAAGAAGCATGGAACATA+TGG - chr5_4:14619221-14619240 None:intergenic 35.0%
AACACAATCAGAAAGAAGCA+TGG - chr5_4:14619230-14619249 None:intergenic 35.0%
ACACGGTTGAATGTCTAAAT+TGG - chr5_4:14619268-14619287 None:intergenic 35.0%
TCCACTCATCTAAATACACA+CGG - chr5_4:14619285-14619304 None:intergenic 35.0%
! ATAATCAGAATCTGAGACCA+TGG - chr5_4:14619545-14619564 None:intergenic 35.0%
ACAACTTCTCTAAATGGCTA+GGG + chr5_4:14619575-14619594 Msa0839570:CDS 35.0%
!!! TCGCCATAGTTTTTTTTGTG+TGG + chr5_4:14619625-14619644 Msa0839570:three_prime_UTR 35.0%
!!! TTTGGTTTTTTGTCGTTCTC+CGG + chr5_4:14619666-14619685 Msa0839570:three_prime_UTR 35.0%
!! AATTTGTTATATGCTGTCCC+TGG + chr5_4:14619792-14619811 Msa0839570:three_prime_UTR 35.0%
TATTGGTAAGAATCATAGCG+AGG + chr5_4:14619895-14619914 Msa0839570:three_prime_UTR 35.0%
CAACTACAATATGTAGCACA+GGG - chr5_4:14619979-14619998 None:intergenic 35.0%
TCAACTACAATATGTAGCAC+AGG - chr5_4:14619980-14619999 None:intergenic 35.0%
!! ATATATCTTTGGTTTGGCAC+TGG - chr5_4:14620046-14620065 None:intergenic 35.0%
TCTGCAAAATCACTTTGTCA+CGG + chr5_4:14620072-14620091 Msa0839570:three_prime_UTR 35.0%
! TTAACGACCAGCACTTTTAA+AGG + chr5_4:14620228-14620247 Msa0839570:three_prime_UTR 35.0%
! TAAGGATCCTTTAAAAGTGC+TGG - chr5_4:14620238-14620257 None:intergenic 35.0%
! TCCTTAACCTCATTTTCGAT+TGG + chr5_4:14620252-14620271 Msa0839570:three_prime_UTR 35.0%
ACCAATCGAAAATGAGGTTA+AGG - chr5_4:14620256-14620275 None:intergenic 35.0%
! AACACTAGCTAGGGTTTTTG+CGG - chr5_4:14616331-14616350 None:intergenic 40.0%
TAGGGTTTGGATAGTGACAA+GGG - chr5_4:14616402-14616421 None:intergenic 40.0%
CACTATCCAAACCCTAGAAT+CGG + chr5_4:14616406-14616425 Msa0839570:CDS 40.0%
!! ACATTTCCGATTCTAGGGTT+TGG - chr5_4:14616415-14616434 None:intergenic 40.0%
!! GTAAGGTTGTCTGGAGTTTT+TGG - chr5_4:14616528-14616547 None:intergenic 40.0%
AGCTTCTGCTATTCCTTCAT+TGG + chr5_4:14616778-14616797 Msa0839570:CDS 40.0%
AGGAGTAGAGAAAACTAAGG+AGG + chr5_4:14616868-14616887 Msa0839570:CDS 40.0%
!!! GGCTATTAAGGTTTTGAAGC+AGG + chr5_4:14616889-14616908 Msa0839570:CDS 40.0%
! TGCTTTTGCTGATGCTGAAA+AGG + chr5_4:14616916-14616935 Msa0839570:CDS 40.0%
TAGGCGATATATATCGCGTA+AGG + chr5_4:14616985-14617004 Msa0839570:CDS 40.0%
AGGCGATATATATCGCGTAA+GGG + chr5_4:14616986-14617005 Msa0839570:CDS 40.0%
! AAGGGACCGTTGATTGTTTA+TGG + chr5_4:14617004-14617023 Msa0839570:CDS 40.0%
!!! GAATCTTTTGAAGCTTGCAC+CGG + chr5_4:14617099-14617118 Msa0839570:CDS 40.0%
!!! AATCTTTTGAAGCTTGCACC+GGG + chr5_4:14617100-14617119 Msa0839570:CDS 40.0%
! TGTTTTACCTAGGGCTAAGA+TGG + chr5_4:14617225-14617244 Msa0839570:CDS 40.0%
TGTTGTGAGGCCAATTAAGA+AGG + chr5_4:14617294-14617313 Msa0839570:CDS 40.0%
TGAAAGGGTTAAGGCTAAGA+AGG + chr5_4:14617426-14617445 Msa0839570:CDS 40.0%
GAAGAGAAAGACTGTCTCTA+AGG + chr5_4:14617462-14617481 Msa0839570:CDS 40.0%
TTCTATCGTGAAGATAGGAC+GGG + chr5_4:14617834-14617853 Msa0839570:intron 40.0%
TTGTAGTTGATCTCGGAAAG+TGG - chr5_4:14618718-14618737 None:intergenic 40.0%
CATCCACTCATCTAAACACA+CGG - chr5_4:14619152-14619171 None:intergenic 40.0%
!!! GGGGAATAATGGATGACTTT+TGG + chr5_4:14619184-14619203 Msa0839570:intron 40.0%
GAAGCATGGAACATATGGAA+TGG - chr5_4:14619216-14619235 None:intergenic 40.0%
ACCGTGTGTATTTAGATGAG+TGG + chr5_4:14619281-14619300 Msa0839570:intron 40.0%
AGAAAGAAGCAGGGAACATA+TGG - chr5_4:14619356-14619375 None:intergenic 40.0%
AACACAGTCAGAAAGAAGCA+GGG - chr5_4:14619365-14619384 None:intergenic 40.0%
AAACACAGTCAGAAAGAAGC+AGG - chr5_4:14619366-14619385 None:intergenic 40.0%
GAAAGCTTGGTATAACACCA+TGG + chr5_4:14619525-14619544 Msa0839570:CDS 40.0%
GACAACTTCTCTAAATGGCT+AGG + chr5_4:14619574-14619593 Msa0839570:CDS 40.0%
CAACTTCTCTAAATGGCTAG+GGG + chr5_4:14619576-14619595 Msa0839570:CDS 40.0%
TTCACATTATGCAGACAGCA+TGG + chr5_4:14619696-14619715 Msa0839570:three_prime_UTR 40.0%
TAAGGTATGCACCTAGCTAT+CGG + chr5_4:14619820-14619839 Msa0839570:three_prime_UTR 40.0%
GGCAAAAAACTACACTTTGG+AGG + chr5_4:14619930-14619949 Msa0839570:three_prime_UTR 40.0%
GTGTGTGTGTGTGAGAAGAA+GGG - chr5_4:14616291-14616310 None:intergenic 45.0%
TGTGTGTGTGTGTGAGAAGA+AGG - chr5_4:14616292-14616311 None:intergenic 45.0%
! ACACTAGCTAGGGTTTTTGC+GGG - chr5_4:14616330-14616349 None:intergenic 45.0%
GGAGGAAGAAACACTAGCTA+GGG - chr5_4:14616340-14616359 None:intergenic 45.0%
AGGGTTTGGATAGTGACAAG+GGG - chr5_4:14616401-14616420 None:intergenic 45.0%
CTAGGGTTTGGATAGTGACA+AGG - chr5_4:14616403-14616422 None:intergenic 45.0%
GGTGGACATTTCCGATTCTA+GGG - chr5_4:14616420-14616439 None:intergenic 45.0%
! TGGAAGGGTTGTTGGTGAAT+CGG - chr5_4:14616441-14616460 None:intergenic 45.0%
ATTGAAGCACGCATGACATC+GGG - chr5_4:14616467-14616486 None:intergenic 45.0%
GATTGAAGCACGCATGACAT+CGG - chr5_4:14616468-14616487 None:intergenic 45.0%
ACCAAACCTCAGCTGAATCA+TGG + chr5_4:14616570-14616589 Msa0839570:CDS 45.0%
CCAAACCTCAGCTGAATCAT+GGG + chr5_4:14616571-14616590 Msa0839570:CDS 45.0%
CAAACCTCAGCTGAATCATG+GGG + chr5_4:14616572-14616591 Msa0839570:CDS 45.0%
!! GCTTTTGGTAACATGTGTCG+TGG + chr5_4:14616662-14616681 Msa0839570:CDS 45.0%
! TTTGGTAACATGTGTCGTGG+TGG + chr5_4:14616665-14616684 Msa0839570:CDS 45.0%
GTAGAATGTTTGCTCCCACA+AGG + chr5_4:14616687-14616706 Msa0839570:CDS 45.0%
CATTTCCTCCAGATCCTTGT+GGG - chr5_4:14616704-14616723 None:intergenic 45.0%
CCAACAACAAGAGGAAACTC+AGG - chr5_4:14616836-14616855 None:intergenic 45.0%
! CCTGAGTTTCCTCTTGTTGT+TGG + chr5_4:14616833-14616852 Msa0839570:CDS 45.0%
AAAAGGCCAAGGATAGCCTT+GGG + chr5_4:14616933-14616952 Msa0839570:CDS 45.0%
TCTAATCCCAAGGCTATCCT+TGG - chr5_4:14616942-14616961 None:intergenic 45.0%
TGGGTCGTTTGATAAGGCTT+CGG + chr5_4:14617186-14617205 Msa0839570:CDS 45.0%
AAGGCTTCGGAGAAGAAGAA+AGG + chr5_4:14617199-14617218 Msa0839570:CDS 45.0%
AGGCTTCGGAGAAGAAGAAA+GGG + chr5_4:14617200-14617219 Msa0839570:CDS 45.0%
GAATTCACCATCTTAGCCCT+AGG - chr5_4:14617235-14617254 None:intergenic 45.0%
CTCTTAGCAGTCTTGGCATA+AGG - chr5_4:14617385-14617404 None:intergenic 45.0%
CTTATGCCAAGACTGCTAAG+AGG + chr5_4:14617383-14617402 Msa0839570:CDS 45.0%
! TTTGCTTGCTGAGGCTGAAA+GGG + chr5_4:14617411-14617430 Msa0839570:CDS 45.0%
TGTTCCTAGGATTCTGCCAA+AGG + chr5_4:14617665-14617684 Msa0839570:intron 45.0%
ATCTCCTTTGGCAGAATCCT+AGG - chr5_4:14617672-14617691 None:intergenic 45.0%
TCTATCGTGAAGATAGGACG+GGG + chr5_4:14617835-14617854 Msa0839570:intron 45.0%
GGATTCTCATCATGCTCTTG+AGG + chr5_4:14618850-14618869 Msa0839570:intron 45.0%
! AGTGGATTTGATGGCAGCTT+TGG + chr5_4:14619060-14619079 Msa0839570:intron 45.0%
! TGGCAGCTTTGGTAAATTCC+TGG + chr5_4:14619071-14619090 Msa0839570:intron 45.0%
! GGCAGCTTTGGTAAATTCCT+GGG + chr5_4:14619072-14619091 Msa0839570:intron 45.0%
CAACCGTGTGTTTAGATGAG+TGG + chr5_4:14619146-14619165 Msa0839570:intron 45.0%
GAAGCAGGGAACATATGGAA+TGG - chr5_4:14619351-14619370 None:intergenic 45.0%
AGCTAGGTGCATACCTTACT+TGG - chr5_4:14619818-14619837 None:intergenic 45.0%
AAGGTATGCACCTAGCTATC+GGG + chr5_4:14619821-14619840 Msa0839570:three_prime_UTR 45.0%
! GTGTAAGCCTTGCGTAGTTT+TGG + chr5_4:14619864-14619883 Msa0839570:three_prime_UTR 45.0%
!! ATAGCGAGGCACCACAATTT+TGG + chr5_4:14619909-14619928 Msa0839570:three_prime_UTR 45.0%
GGCAGTGTTTGAATTCACTG+TGG + chr5_4:14619951-14619970 Msa0839570:three_prime_UTR 45.0%
GGGAGGAAGAAACACTAGCT+AGG - chr5_4:14616341-14616360 None:intergenic 50.0%
TTTCTTCCTCCCTCCACCAA+TGG + chr5_4:14616349-14616368 Msa0839570:exon 50.0%
CGGTGGACATTTCCGATTCT+AGG - chr5_4:14616421-14616440 None:intergenic 50.0%
! AAGGGTTGTTGGTGAATCGG+TGG - chr5_4:14616438-14616457 None:intergenic 50.0%
CATGACATCGGGGATTGGAA+GGG - chr5_4:14616456-14616475 None:intergenic 50.0%
TTGAAGCACGCATGACATCG+GGG - chr5_4:14616466-14616485 None:intergenic 50.0%
CGAAGTTGACGATGTCAGGA+CGG - chr5_4:14616490-14616509 None:intergenic 50.0%
TGGACGAAGTTGACGATGTC+AGG - chr5_4:14616494-14616513 None:intergenic 50.0%
!! AGGTTTGGTGACCAGCTTTC+CGG - chr5_4:14616559-14616578 None:intergenic 50.0%
CCCATGATTCAGCTGAGGTT+TGG - chr5_4:14616574-14616593 None:intergenic 50.0%
TCAGCTGAATCATGGGGTAC+CGG + chr5_4:14616578-14616597 Msa0839570:CDS 50.0%
GATACGTGAAACAGCACGTC+CGG - chr5_4:14616600-14616619 None:intergenic 50.0%
TGTTTGCTCCCACAAGGATC+TGG + chr5_4:14616693-14616712 Msa0839570:CDS 50.0%
CCATTTCCTCCAGATCCTTG+TGG - chr5_4:14616705-14616724 None:intergenic 50.0%
CCACAAGGATCTGGAGGAAA+TGG + chr5_4:14616702-14616721 Msa0839570:CDS 50.0%
GGATCTGGAGGAAATGGCAT+AGG + chr5_4:14616708-14616727 Msa0839570:CDS 50.0%
CCACGAGCAAGAACCAATGA+AGG - chr5_4:14616794-14616813 None:intergenic 50.0%
!! CCTTCATTGGTTCTTGCTCG+TGG + chr5_4:14616791-14616810 Msa0839570:CDS 50.0%
TGGTTCTTGCTCGTGGTCAT+AGG + chr5_4:14616798-14616817 Msa0839570:CDS 50.0%
GCAGCATCACCAACAACAAG+AGG - chr5_4:14616845-14616864 None:intergenic 50.0%
!! GTTGTTGGTGATGCTGCTGA+AGG + chr5_4:14616848-14616867 Msa0839570:CDS 50.0%
TGCTGATGCTGAAAAGGCCA+AGG + chr5_4:14616922-14616941 Msa0839570:CDS 50.0%
GAAAAGGCCAAGGATAGCCT+TGG + chr5_4:14616932-14616951 Msa0839570:CDS 50.0%
! GATAGCCTTGGGATTAGACC+CGG + chr5_4:14616944-14616963 Msa0839570:CDS 50.0%
! ATAGCCTTGGGATTAGACCC+GGG + chr5_4:14616945-14616964 Msa0839570:CDS 50.0%
ATTCCTCATCTTCCCCTTCC+CGG - chr5_4:14616966-14616985 None:intergenic 50.0%
GGAAGGGGAAGATGAGGAAT+AGG + chr5_4:14616966-14616985 Msa0839570:CDS 50.0%
! TTATGGTACTGAAGGGGCGA+AGG + chr5_4:14617021-14617040 Msa0839570:CDS 50.0%
! CGAAGGCGGTTAAGGCTTTT+AGG + chr5_4:14617038-14617057 Msa0839570:CDS 50.0%
!!! TTTTGAAGCTTGCACCGGGT+GGG + chr5_4:14617104-14617123 Msa0839570:CDS 50.0%
!! ATGAGGTGCAGAGTGTTGTG+AGG + chr5_4:14617281-14617300 Msa0839570:CDS 50.0%
TGCCAAGACTGCTAAGAGGA+TGG + chr5_4:14617387-14617406 Msa0839570:CDS 50.0%
AGCCATCCTCTTAGCAGTCT+TGG - chr5_4:14617392-14617411 None:intergenic 50.0%
! CTTTGCTTGCTGAGGCTGAA+AGG + chr5_4:14617410-14617429 Msa0839570:CDS 50.0%
TGCTGAGGCTGAAAGGGTTA+AGG + chr5_4:14617417-14617436 Msa0839570:CDS 50.0%
CGGGGATCTCAATTGCATGA+AGG + chr5_4:14617853-14617872 Msa0839570:intron 50.0%
GAATAAGACAGCGGTCGCTT+CGG + chr5_4:14618292-14618311 Msa0839570:intron 50.0%
TCTCGGAAAGTGGAGCATAG+CGG - chr5_4:14618708-14618727 None:intergenic 50.0%
TGTGTTCCTTTCCCTCTTCC+AGG + chr5_4:14619474-14619493 Msa0839570:intron 50.0%
AGAAGCTTCCTCCTGGAAGA+GGG - chr5_4:14619488-14619507 None:intergenic 50.0%
GTGCATACCTTACTTGGCCA+GGG - chr5_4:14619812-14619831 None:intergenic 50.0%
TCGGGGATTGGAAGGGTTGT+TGG - chr5_4:14616449-14616468 None:intergenic 55.0%
GCATGACATCGGGGATTGGA+AGG - chr5_4:14616457-14616476 None:intergenic 55.0%
GGTACCCCATGATTCAGCTG+AGG - chr5_4:14616579-14616598 None:intergenic 55.0%
TCACGTATCCCTCGTGTTGC+TGG + chr5_4:14616611-14616630 Msa0839570:CDS 55.0%
CAAAAGCAGCCTGACCAGCA+CGG - chr5_4:14616649-14616668 None:intergenic 55.0%
TTGCTCCCACAAGGATCTGG+AGG + chr5_4:14616696-14616715 Msa0839570:CDS 55.0%
CTTGGGATTAGACCCGGGAA+GGG + chr5_4:14616950-14616969 Msa0839570:CDS 55.0%
TTGGGATTAGACCCGGGAAG+GGG + chr5_4:14616951-14616970 Msa0839570:CDS 55.0%
TTCCTCATCTTCCCCTTCCC+GGG - chr5_4:14616965-14616984 None:intergenic 55.0%
!!! CTTTTGAAGCTTGCACCGGG+TGG + chr5_4:14617103-14617122 Msa0839570:CDS 55.0%
AACCTACCCAAATGCCCACC+CGG - chr5_4:14617121-14617140 None:intergenic 55.0%
! GAGGATGGCTTTGCTTGCTG+AGG + chr5_4:14617402-14617421 Msa0839570:CDS 55.0%
CTTATTCCGCACCGCTACGA+CGG - chr5_4:14618279-14618298 None:intergenic 55.0%
AGCGGTGCGGAATAAGACAG+CGG + chr5_4:14618283-14618302 Msa0839570:intron 55.0%
TAGCGGCTGACCCCAAAAGT+GGG - chr5_4:14618691-14618710 None:intergenic 55.0%
ATAGCGGCTGACCCCAAAAG+TGG - chr5_4:14618692-14618711 None:intergenic 55.0%
GTTCCTTTCCCTCTTCCAGG+AGG + chr5_4:14619477-14619496 Msa0839570:intron 55.0%
CTTCCTCCTGGAAGAGGGAA+AGG - chr5_4:14619483-14619502 None:intergenic 55.0%
CAGAAGCTTCCTCCTGGAAG+AGG - chr5_4:14619489-14619508 None:intergenic 55.0%
TGATGGCAGAAGCTTCCTCC+TGG - chr5_4:14619495-14619514 None:intergenic 55.0%
GGAGGAAGCTTCTGCCATCA+AGG + chr5_4:14619495-14619514 Msa0839570:intron 55.0%
CTTCTGCCATCAAGGCTGCA+GGG + chr5_4:14619503-14619522 Msa0839570:CDS 55.0%
AGCTTTCCCTGCAGCCTTGA+TGG - chr5_4:14619512-14619531 None:intergenic 55.0%
TCAAGGCTGCAGGGAAAGCT+TGG + chr5_4:14619512-14619531 Msa0839570:CDS 55.0%
ATGCTGTCCCTGGCCAAGTA+AGG + chr5_4:14619802-14619821 Msa0839570:three_prime_UTR 55.0%
GGTGCATACCTTACTTGGCC+AGG - chr5_4:14619813-14619832 None:intergenic 55.0%
TCAGCAGACACCCGATAGCT+AGG - chr5_4:14619834-14619853 None:intergenic 55.0%
GCACGCATGACATCGGGGAT+TGG - chr5_4:14616461-14616480 None:intergenic 60.0%
GCTGACGGCGTAAGGTTGTC+TGG - chr5_4:14616537-14616556 None:intergenic 60.0%
GACAACCTTACGCCGTCAGC+CGG + chr5_4:14616537-14616556 Msa0839570:CDS 60.0%
GTGACCAGCTTTCCGGCTGA+CGG - chr5_4:14616552-14616571 None:intergenic 60.0%
! CGTATCCCTCGTGTTGCTGG+TGG + chr5_4:14616614-14616633 Msa0839570:CDS 60.0%
! ATCCCTCGTGTTGCTGGTGG+TGG + chr5_4:14616617-14616636 Msa0839570:CDS 60.0%
! TCCCTCGTGTTGCTGGTGGT+GGG + chr5_4:14616618-14616637 Msa0839570:CDS 60.0%
TCCCACCACCAGCAACACGA+GGG - chr5_4:14616622-14616641 None:intergenic 60.0%
!! CGTGCTGGTCAGGCTGCTTT+TGG + chr5_4:14616647-14616666 Msa0839570:CDS 60.0%
CCTTCCCGGGTCTAATCCCA+AGG - chr5_4:14616952-14616971 None:intergenic 60.0%
CCTTGGGATTAGACCCGGGA+AGG + chr5_4:14616949-14616968 Msa0839570:CDS 60.0%
! TGGTACTGAAGGGGCGAAGG+CGG + chr5_4:14617024-14617043 Msa0839570:CDS 60.0%
TGAAGGGGCGAAGGCGGTTA+AGG + chr5_4:14617030-14617049 Msa0839570:CDS 60.0%
CTTGCACCGGGTGGGCATTT+GGG + chr5_4:14617112-14617131 Msa0839570:CDS 60.0%
CGCTACGACGGTTAGCGTAG+CGG - chr5_4:14618267-14618286 None:intergenic 60.0%
CGCTACGCTAACCGTCGTAG+CGG + chr5_4:14618265-14618284 Msa0839570:intron 60.0%
GGTCGCTTCGGCTGCTATAG+CGG + chr5_4:14618304-14618323 Msa0839570:intron 60.0%
! GCTATAGCGGCGTAGTGGAG+CGG + chr5_4:14618317-14618336 Msa0839570:intron 60.0%
GCTTCTGCCATCAAGGCTGC+AGG + chr5_4:14619502-14619521 Msa0839570:CDS 60.0%
! ACGTGCTGCTGCTGCTGCTG+CGG - chr5_4:14616378-14616397 None:intergenic 65.0%
GCTTTCCGGCTGACGGCGTA+AGG - chr5_4:14616545-14616564 None:intergenic 65.0%
TACGCCGTCAGCCGGAAAGC+TGG + chr5_4:14616545-14616564 Msa0839570:CDS 65.0%
GTCCCACCACCAGCAACACG+AGG - chr5_4:14616623-14616642 None:intergenic 65.0%
AGCAGCCTGACCAGCACGGT+GGG - chr5_4:14616645-14616664 None:intergenic 65.0%
AAGCAGCCTGACCAGCACGG+TGG - chr5_4:14616646-14616665 None:intergenic 65.0%
GACCCGGGAAGGGGAAGATG+AGG + chr5_4:14616960-14616979 Msa0839570:CDS 65.0%
GCTTGCACCGGGTGGGCATT+TGG + chr5_4:14617111-14617130 Msa0839570:CDS 65.0%
CACCGGGTGGGCATTTGGGT+AGG + chr5_4:14617116-14617135 Msa0839570:CDS 65.0%
CGCTAACCGTCGTAGCGGTG+CGG + chr5_4:14618270-14618289 Msa0839570:intron 65.0%
CGGCTGCTATAGCGGCGTAG+TGG + chr5_4:14618312-14618331 Msa0839570:intron 65.0%
CTGCGGCGGCCATTGGTGGA+GGG - chr5_4:14616361-14616380 None:intergenic 70.0%
TGCTGCTGCTGCTGCTGCGG+CGG - chr5_4:14616375-14616394 None:intergenic 70.0%
! TGGGACCCACCGTGCTGGTC+AGG + chr5_4:14616637-14616656 Msa0839570:CDS 70.0%
GTTAGCGTAGCGGCGACGCG+TGG - chr5_4:14618257-14618276 None:intergenic 70.0%
! AGCGGCGTAGTGGAGCGGAG+TGG + chr5_4:14618322-14618341 Msa0839570:intron 70.0%
CGGCGGCCATTGGTGGAGGG+AGG - chr5_4:14616358-14616377 None:intergenic 75.0%
GCTGCGGCGGCCATTGGTGG+AGG - chr5_4:14616362-14616381 None:intergenic 75.0%
GCTGCTGCGGCGGCCATTGG+TGG - chr5_4:14616365-14616384 None:intergenic 75.0%
GCTGCTGCTGCGGCGGCCAT+TGG - chr5_4:14616368-14616387 None:intergenic 75.0%
!! GGTGGTGGGACCCACCGTGC+TGG + chr5_4:14616632-14616651 Msa0839570:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 14616249 14620276 14616249 ID=Msa0839570;Name=Msa0839570
chr5_4 mRNA 14616249 14620276 14616249 ID=Msa0839570-mRNA-1;Parent=Msa0839570;Name=Msa0839570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=119|1|1|1|1|1|2|667|409
chr5_4 exon 14616249 14617483 14616249 ID=Msa0839570-mRNA-1:exon:6378;Parent=Msa0839570-mRNA-1
chr5_4 exon 14619496 14620276 14619496 ID=Msa0839570-mRNA-1:exon:6379;Parent=Msa0839570-mRNA-1
chr5_4 five_prime_UTR 14616249 14616367 14616249 ID=Msa0839570-mRNA-1:five_prime_utr;Parent=Msa0839570-mRNA-1
chr5_4 CDS 14616368 14617483 14616368 ID=Msa0839570-mRNA-1:cds;Parent=Msa0839570-mRNA-1
chr5_4 CDS 14619496 14619609 14619496 ID=Msa0839570-mRNA-1:cds;Parent=Msa0839570-mRNA-1
chr5_4 three_prime_UTR 14619610 14620276 14619610 ID=Msa0839570-mRNA-1:three_prime_utr;Parent=Msa0839570-mRNA-1
Gene Sequence

>Msa0839570

ATGGCCGCCGCAGCAGCAGCAGCAGCACGTCCCCTTGTCACTATCCAAACCCTAGAATCGGAAATGTCCACCGATTCACCAACAACCCTTCCAATCCCCGATGTCATGCGTGCTTCAATCCGTCCTGACATCGTCAACTTCGTCCATTCCAACATTTCCAAAAACTCCAGACAACCTTACGCCGTCAGCCGGAAAGCTGGTCACCAAACCTCAGCTGAATCATGGGGTACCGGACGTGCTGTTTCACGTATCCCTCGTGTTGCTGGTGGTGGGACCCACCGTGCTGGTCAGGCTGCTTTTGGTAACATGTGTCGTGGTGGTAGAATGTTTGCTCCCACAAGGATCTGGAGGAAATGGCATAGGAAGATTAATGTTAATCAGAAACGTTATGCTGTTGTTTCAGCTATAGCAGCTTCTGCTATTCCTTCATTGGTTCTTGCTCGTGGTCATAGGATTGAGACTGTTCCTGAGTTTCCTCTTGTTGTTGGTGATGCTGCTGAAGGAGTAGAGAAAACTAAGGAGGCTATTAAGGTTTTGAAGCAGGTTGGTGCTTTTGCTGATGCTGAAAAGGCCAAGGATAGCCTTGGGATTAGACCCGGGAAGGGGAAGATGAGGAATAGGCGATATATATCGCGTAAGGGACCGTTGATTGTTTATGGTACTGAAGGGGCGAAGGCGGTTAAGGCTTTTAGGAATATTCCTGGTGTTGAGATTACTAATGTGGAGAGGTTGAATCTTTTGAAGCTTGCACCGGGTGGGCATTTGGGTAGGTTTGTGATTTGGACTAAGTCTGCTTTTGAGAAATTGGATTCGATTTATGGGTCGTTTGATAAGGCTTCGGAGAAGAAGAAAGGGTATGTTTTACCTAGGGCTAAGATGGTGAATTCTGATTTGACTAGGATTATTAATAGTGATGAGGTGCAGAGTGTTGTGAGGCCAATTAAGAAGGATGTTAAGAGGGCTACGCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTCAGGCTTAATCCTTATGCCAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAGGCTGAAAGGGTTAAGGCTAAGAAGGAGAAGCTCGATAAGAAGAGAAAGACTGTCTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGGAAAGCTTGGTATAACACCATGGTCTCAGATTCTGATTATGCTGAATTTGACAACTTCTCTAAATGGCTAGGGGTTTCTCAGTAA
Protein sequence

>Msa0839570

MAAAAAAAARPLVTIQTLESEMSTDSPTTLPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIETVPEFPLVVGDAAEGVEKTKEAIKVLKQVGAFADAEKAKDSLGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKASEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYAEFDNFSKWLGVSQ*