Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802520 | sp|Q9C9G6|AE7_ARATH | 64.286 | 154 | 31 | 2 | 1 | 131 | 1 | 153 | 1.21e-60 | 186 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802520 | G7K9K6 | 75.000 | 168 | 10 | 2 | 1 | 136 | 1 | 168 | 6.86e-75 | 229 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0068740 | Msa0802520 | -0.801745 | 7.788359e-49 | -8.615850e-47 |
Msa0221960 | Msa0802520 | -0.811607 | 6.432974e-51 | -8.615850e-47 |
Msa0481280 | Msa0802520 | 0.810397 | 1.176555e-50 | -8.615850e-47 |
Msa0335060 | Msa0802520 | 0.816057 | 6.728634e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802520 | MtrunA17_Chr5g0410111 | 98.780 | 82 | 1 | 0 | 55 | 136 | 6 | 87 | 2.51e-56 | 170 |
Msa0802520 | MtrunA17_Chr5g0404021 | 73.684 | 76 | 20 | 0 | 56 | 131 | 20 | 95 | 1.73e-37 | 123 |
Msa0802520 | MtrunA17_Chr5g0410121 | 76.667 | 60 | 8 | 1 | 1 | 54 | 1 | 60 | 2.39e-21 | 81.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802520 | AT1G68310.1 | 64.744 | 156 | 29 | 3 | 1 | 131 | 1 | 155 | 1.44e-62 | 189 |
Msa0802520 | AT1G68310.2 | 64.286 | 154 | 31 | 2 | 1 | 131 | 1 | 153 | 1.23e-61 | 186 |
Msa0802520 | AT3G50845.1 | 49.351 | 154 | 50 | 2 | 1 | 131 | 1 | 149 | 8.29e-42 | 136 |
Msa0802520 | AT3G09380.1 | 46.939 | 147 | 61 | 3 | 1 | 131 | 1 | 146 | 1.01e-35 | 120 |
Find 38 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCGTTCCCAAAATGGTTTC+TGG | 0.240563 | 5_3:-16940290 | None:intergenic |
CAATTATAGGTCTTTGTTTA+CGG | 0.252751 | 5_3:-16939345 | Msa0802520:CDS |
TTGTAGTTCAATATGATTAT+AGG | 0.279752 | 5_3:-16936239 | Msa0802520:three_prime_UTR |
CAGCTTATGTTTCATAGTTA+TGG | 0.289408 | 5_3:-16936122 | Msa0802520:three_prime_UTR |
AAATCCAAACCTTGTGGATA+TGG | 0.295982 | 5_3:-16936439 | Msa0802520:CDS |
TCAACCATATCCACAAGGTT+TGG | 0.362140 | 5_3:+16936435 | None:intergenic |
AATTATAGGTCTTTGTTTAC+GGG | 0.379203 | 5_3:-16939344 | Msa0802520:CDS |
TGCAGTATGGCAACAATTAT+AGG | 0.383094 | 5_3:-16939358 | Msa0802520:CDS |
CCCACAAGACTCGTAGAATT+AGG | 0.396254 | 5_3:+16936369 | None:intergenic |
TATTAGCTCTAGTGAAGAAA+AGG | 0.412957 | 5_3:-16936166 | Msa0802520:three_prime_UTR |
AAAATCTCTTGTTGATCGAT+TGG | 0.416117 | 5_3:+16940176 | None:intergenic |
AGAAAATAAAGAGTAATCAT+AGG | 0.431425 | 5_3:+16936056 | None:intergenic |
TTGTTGATCGATTGGTTCGA+CGG | 0.448440 | 5_3:+16940184 | None:intergenic |
GCTTCAGTTGCATGAGATCC+AGG | 0.451024 | 5_3:+16936945 | None:intergenic |
GACAGTGGAGCATTGCAGTA+TGG | 0.452564 | 5_3:-16939371 | Msa0802520:CDS |
CCTAATTCTACGAGTCTTGT+GGG | 0.472596 | 5_3:-16936369 | Msa0802520:three_prime_UTR |
GAACTACAATTACATGTAGT+AGG | 0.475009 | 5_3:+16936253 | None:intergenic |
TCCTAATTCTACGAGTCTTG+TGG | 0.475328 | 5_3:-16936370 | Msa0802520:three_prime_UTR |
AAATAAAGTTGAACGACTAC+TGG | 0.486648 | 5_3:+16936329 | None:intergenic |
GGTTACGTTTACTCCGACAG+TGG | 0.525455 | 5_3:-16939386 | Msa0802520:CDS |
AAGTTTGCCTCCGCGGTACA+AGG | 0.534884 | 5_3:-16939308 | Msa0802520:intron |
CGGTGTATTCATCAGTAGGA+AGG | 0.543907 | 5_3:+16940204 | None:intergenic |
TCTCATGCAACTGAAGCTGC+AGG | 0.547140 | 5_3:-16936939 | Msa0802520:intron |
ATTAGCTCTAGTGAAGAAAA+GGG | 0.549687 | 5_3:-16936165 | Msa0802520:three_prime_UTR |
AAGTTCCTTCAATCAAAAGA+TGG | 0.559241 | 5_3:+16936399 | None:intergenic |
GTGGACATCAGAGTGGCACC+TGG | 0.564431 | 5_3:-16936963 | Msa0802520:CDS |
TTCAATCAAAAGATGGCGCA+AGG | 0.585537 | 5_3:+16936406 | None:intergenic |
TCGACGGTGTATTCATCAGT+AGG | 0.588668 | 5_3:+16940200 | None:intergenic |
AAAGAGTAATCATAGGAATG+TGG | 0.606131 | 5_3:+16936063 | None:intergenic |
GGTGTATTCATCAGTAGGAA+GGG | 0.618099 | 5_3:+16940205 | None:intergenic |
TCTTGAGAAGTTTGCCTCCG+CGG | 0.619410 | 5_3:-16939315 | Msa0802520:CDS |
ATACTGCAATGCTCCACTGT+CGG | 0.626893 | 5_3:+16939373 | None:intergenic |
GTGATAGCTGAGTAGTGTCA+AGG | 0.635776 | 5_3:-16936198 | Msa0802520:three_prime_UTR |
ACAAGACTCGTAGAATTAGG+AGG | 0.644675 | 5_3:+16936372 | None:intergenic |
TGGTTAGGTGGACATCAGAG+TGG | 0.646704 | 5_3:-16936970 | Msa0802520:intron |
ACTTGAAAATCCAAACCTTG+TGG | 0.649054 | 5_3:-16936445 | Msa0802520:CDS |
AATGTTACCTTGTACCGCGG+AGG | 0.685456 | 5_3:+16939301 | None:intergenic |
ATTCATCAACCATATCCACA+AGG | 0.710416 | 5_3:+16936430 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTGGATTATTTTTATTT+AGG | - | chr5_3:16936904-16936923 | Msa0802520:intron | 10.0% |
!!! | TATTGGATTATTTTTATTTA+GGG | - | chr5_3:16936905-16936924 | Msa0802520:intron | 10.0% |
!!! | ATATTATTGATTATTCTTTA+AGG | + | chr5_3:16937391-16937410 | None:intergenic | 10.0% |
!! | ATTTATGTGTTTAAAAAATA+TGG | + | chr5_3:16939224-16939243 | None:intergenic | 10.0% |
!! | ATTTAGAAAGAAAAAGTAAA+AGG | + | chr5_3:16936168-16936187 | None:intergenic | 15.0% |
!! | TTTCTATAACAAAAGATAAA+GGG | + | chr5_3:16936599-16936618 | None:intergenic | 15.0% |
!! | ATTTCTATAACAAAAGATAA+AGG | + | chr5_3:16936600-16936619 | None:intergenic | 15.0% |
!! | ATATGATTTAAGAATTGTTA+AGG | + | chr5_3:16936707-16936726 | None:intergenic | 15.0% |
!!! | TAATTTAGTTTACTAATAGA+TGG | - | chr5_3:16937070-16937089 | Msa0802520:intron | 15.0% |
!!! | TTTATTATTTCTGTTTTAAG+AGG | + | chr5_3:16937533-16937552 | None:intergenic | 15.0% |
!!! | ATATAACATAATTTTATAGC+AGG | + | chr5_3:16937820-16937839 | None:intergenic | 15.0% |
!! | AATCAGTTAAAGAAAAAATT+TGG | - | chr5_3:16938356-16938375 | Msa0802520:intron | 15.0% |
!! | GAAATATTTAATGATTTAAG+AGG | - | chr5_3:16938753-16938772 | Msa0802520:intron | 15.0% |
!!! | TTTGTATGATATTTTTGTTT+TGG | - | chr5_3:16940003-16940022 | Msa0802520:intron | 15.0% |
!!! | AGTGATAATGAAACAAAAAA+TGG | + | chr5_3:16936192-16936211 | None:intergenic | 20.0% |
!!! | TGTTTCATTATCACTTTTAT+TGG | - | chr5_3:16936197-16936216 | Msa0802520:three_prime_UTR | 20.0% |
!!! | AAGGCAATTTTACTTTATTT+TGG | - | chr5_3:16936413-16936432 | Msa0802520:CDS | 20.0% |
!!! | AGGCAATTTTACTTTATTTT+GGG | - | chr5_3:16936414-16936433 | Msa0802520:CDS | 20.0% |
!! | AAATCATATAAGAGATATCA+AGG | - | chr5_3:16936718-16936737 | Msa0802520:intron | 20.0% |
!! | ATTTATTCTTTCCAAGTATT+TGG | - | chr5_3:16936839-16936858 | Msa0802520:intron | 20.0% |
!!! | GATTAATGTGTTTGTTTTAT+TGG | - | chr5_3:16936888-16936907 | Msa0802520:intron | 20.0% |
!! | TTATAGCATAACATAAAATG+TGG | - | chr5_3:16937226-16937245 | Msa0802520:intron | 20.0% |
!! | ATAACACAAAATATTGGAAT+TGG | + | chr5_3:16937258-16937277 | None:intergenic | 20.0% |
!!! | ATTCCAATATTTTGTGTTAT+TGG | - | chr5_3:16937258-16937277 | Msa0802520:intron | 20.0% |
!!! | TTCCAATATTTTGTGTTATT+GGG | - | chr5_3:16937259-16937278 | Msa0802520:intron | 20.0% |
!! | ATTGTAACTTTAATATTGCA+CGG | - | chr5_3:16937318-16937337 | Msa0802520:intron | 20.0% |
!! | TTTGATTATCAGATAAAGAT+AGG | - | chr5_3:16937590-16937609 | Msa0802520:intron | 20.0% |
!!! | TAACACAAATGTTTTTTGTT+GGG | + | chr5_3:16938101-16938120 | None:intergenic | 20.0% |
!! | AACCAAATATTAACAACATA+GGG | + | chr5_3:16939294-16939313 | None:intergenic | 20.0% |
!! | AAACCAAATATTAACAACAT+AGG | + | chr5_3:16939295-16939314 | None:intergenic | 20.0% |
!!! | TCTTGATGATTTCTAAATTT+TGG | - | chr5_3:16939322-16939341 | Msa0802520:CDS | 20.0% |
!!! | ATGATTTCTAAATTTTGGTT+AGG | - | chr5_3:16939327-16939346 | Msa0802520:CDS | 20.0% |
!!! | CCTTAGATTTAGATTATTTT+GGG | - | chr5_3:16939592-16939611 | Msa0802520:intron | 20.0% |
!!! | CTTAGATTTAGATTATTTTG+GGG | - | chr5_3:16939593-16939612 | Msa0802520:intron | 20.0% |
!!! | GATTTGATACTTTGTTTTAT+TGG | - | chr5_3:16939632-16939651 | Msa0802520:intron | 20.0% |
!! | TAAGAATTTAAAGAAACATG+TGG | + | chr5_3:16939709-16939728 | None:intergenic | 20.0% |
!! | TTGTAGTTCAATATGATTAT+AGG | - | chr5_3:16940073-16940092 | Msa0802520:intron | 20.0% |
!! | AGAAAATAAAGAGTAATCAT+AGG | + | chr5_3:16940259-16940278 | None:intergenic | 20.0% |
!! | AAATTGATTTAGAGCATGTT+TGG | - | chr5_3:16936245-16936264 | Msa0802520:three_prime_UTR | 25.0% |
!!! | TAAGCTGTTTTCATAAACTA+TGG | + | chr5_3:16936389-16936408 | None:intergenic | 25.0% |
! | TATGAAAACAGCTTATATGA+AGG | - | chr5_3:16936394-16936413 | Msa0802520:exon | 25.0% |
! | CAAAAATAAGCCTATACAAA+CGG | + | chr5_3:16936441-16936460 | None:intergenic | 25.0% |
! | ATGATCAAAAAAGTTATGTC+AGG | - | chr5_3:16936804-16936823 | Msa0802520:intron | 25.0% |
!! | CAATTATAGGTCTTTGTTTA+CGG | - | chr5_3:16936967-16936986 | Msa0802520:intron | 25.0% |
!! | AATTATAGGTCTTTGTTTAC+GGG | - | chr5_3:16936968-16936987 | Msa0802520:intron | 25.0% |
!! | TGTTGCTTGGTAATATATAA+TGG | - | chr5_3:16937100-16937119 | Msa0802520:intron | 25.0% |
! | AATCAATAATATGAAACGCA+TGG | - | chr5_3:16937399-16937418 | Msa0802520:intron | 25.0% |
! | ATCAATAATATGAAACGCAT+GGG | - | chr5_3:16937400-16937419 | Msa0802520:intron | 25.0% |
!!! | AGACAGATATTCTGTTTTAA+GGG | + | chr5_3:16937571-16937590 | None:intergenic | 25.0% |
!! | AAGACAGATATTCTGTTTTA+AGG | + | chr5_3:16937572-16937591 | None:intergenic | 25.0% |
! | GTATCATTATCTGCTATAAA+GGG | - | chr5_3:16937874-16937893 | Msa0802520:intron | 25.0% |
!!! | GTAACACAAATGTTTTTTGT+TGG | + | chr5_3:16938102-16938121 | None:intergenic | 25.0% |
!! | ATGCTAAATGAACATGATTT+TGG | - | chr5_3:16938627-16938646 | Msa0802520:intron | 25.0% |
!!! | AAATGAACATGATTTTGGTT+TGG | - | chr5_3:16938632-16938651 | Msa0802520:intron | 25.0% |
! | AGTAGATAGAGTTGTTATAT+AGG | - | chr5_3:16938823-16938842 | Msa0802520:intron | 25.0% |
! | GTAGATAGAGTTGTTATATA+GGG | - | chr5_3:16938824-16938843 | Msa0802520:intron | 25.0% |
! | TCATGCAATCTGTAATTAAT+TGG | + | chr5_3:16939248-16939267 | None:intergenic | 25.0% |
! | ACCAAATATTAACAACATAG+GGG | + | chr5_3:16939293-16939312 | None:intergenic | 25.0% |
!!! | ATTTCTAAATTTTGGTTAGG+TGG | - | chr5_3:16939330-16939349 | Msa0802520:CDS | 25.0% |
! | AAAATCCTCATAAAACACAT+GGG | + | chr5_3:16939451-16939470 | None:intergenic | 25.0% |
!! | AGATCAGATATTTAAAGTAC+AGG | + | chr5_3:16939482-16939501 | None:intergenic | 25.0% |
!! | GCCTTAGATTTAGATTATTT+TGG | - | chr5_3:16939591-16939610 | Msa0802520:intron | 25.0% |
! | CCCAAAATAATCTAAATCTA+AGG | + | chr5_3:16939595-16939614 | None:intergenic | 25.0% |
AAAATCTCTTGTTGATCGAT+TGG | + | chr5_3:16936139-16936158 | None:intergenic | 30.0% | |
TCAAATTCTTCTTATGTGAG+TGG | + | chr5_3:16936291-16936310 | None:intergenic | 30.0% | |
CTGAAAACAACTTATGAACA+TGG | + | chr5_3:16936345-16936364 | None:intergenic | 30.0% | |
CCAAGTATAAACCAAATACT+TGG | + | chr5_3:16936853-16936872 | None:intergenic | 30.0% | |
! | CCAAGTATTTGGTTTATACT+TGG | - | chr5_3:16936850-16936869 | Msa0802520:intron | 30.0% |
! | TATTTGGTTTATACTTGGTG+TGG | - | chr5_3:16936855-16936874 | Msa0802520:intron | 30.0% |
!! | TTTATACTTGGTGTGGATTA+TGG | - | chr5_3:16936862-16936881 | Msa0802520:intron | 30.0% |
AGCATAACATAAAATGTGGT+AGG | - | chr5_3:16937230-16937249 | Msa0802520:intron | 30.0% | |
CTCCCAATAACACAAAATAT+TGG | + | chr5_3:16937264-16937283 | None:intergenic | 30.0% | |
!! | GACAGATATTCTGTTTTAAG+GGG | + | chr5_3:16937570-16937589 | None:intergenic | 30.0% |
TCCTTTCCTTCTTAAATACT+GGG | + | chr5_3:16937681-16937700 | None:intergenic | 30.0% | |
GATAATGATACCTCATTCTT+TGG | + | chr5_3:16937865-16937884 | None:intergenic | 30.0% | |
GGTATCATTATCTGCTATAA+AGG | - | chr5_3:16937873-16937892 | Msa0802520:intron | 30.0% | |
CAAATGCTGTTATGAAAAAG+AGG | + | chr5_3:16938000-16938019 | None:intergenic | 30.0% | |
!! | CGCTTTTAATTCTATTTTGC+AGG | + | chr5_3:16938137-16938156 | None:intergenic | 30.0% |
TTAATTTCTTGAGTAACCCT+TGG | + | chr5_3:16938418-16938437 | None:intergenic | 30.0% | |
TTTGGAAAGGAGTTTACAAA+GGG | + | chr5_3:16938493-16938512 | None:intergenic | 30.0% | |
!! | TTTTGGAAAGGAGTTTACAA+AGG | + | chr5_3:16938494-16938513 | None:intergenic | 30.0% |
! | AAAAGCAAGGATCAAACTTT+TGG | + | chr5_3:16938511-16938530 | None:intergenic | 30.0% |
! | CTTTTGTATGTAGATGTCAA+TGG | - | chr5_3:16938563-16938582 | Msa0802520:intron | 30.0% |
TCATGTTCATTTAGCATCAT+GGG | + | chr5_3:16938624-16938643 | None:intergenic | 30.0% | |
ATCATGTTCATTTAGCATCA+TGG | + | chr5_3:16938625-16938644 | None:intergenic | 30.0% | |
ACTTATGTGATGATTTAGAC+AGG | + | chr5_3:16938688-16938707 | None:intergenic | 30.0% | |
!!! | ATGCCTCTTCATTTCTTTTT+TGG | + | chr5_3:16938791-16938810 | None:intergenic | 30.0% |
AAAAAAGAAATGAAGAGGCA+TGG | - | chr5_3:16938790-16938809 | Msa0802520:intron | 30.0% | |
GAGTTGTTATATAGGGAAAA+TGG | - | chr5_3:16938831-16938850 | Msa0802520:intron | 30.0% | |
TAAGAATAGGAAAGATCAAG+TGG | - | chr5_3:16938920-16938939 | Msa0802520:intron | 30.0% | |
TTTAGGCAGACAAACTTATA+AGG | - | chr5_3:16939137-16939156 | Msa0802520:intron | 30.0% | |
ACCCCTATGTTGTTAATATT+TGG | - | chr5_3:16939289-16939308 | Msa0802520:intron | 30.0% | |
CAAAATCCTCATAAAACACA+TGG | + | chr5_3:16939452-16939471 | None:intergenic | 30.0% | |
AAGTTCCTTCAATCAAAAGA+TGG | + | chr5_3:16939916-16939935 | None:intergenic | 30.0% | |
AAATAAAGTTGAACGACTAC+TGG | + | chr5_3:16939986-16940005 | None:intergenic | 30.0% | |
!!! | ATTTTTGTTTTGGATTGCTG+AGG | - | chr5_3:16940013-16940032 | Msa0802520:intron | 30.0% |
GAACTACAATTACATGTAGT+AGG | + | chr5_3:16940062-16940081 | None:intergenic | 30.0% | |
!! | TATTAGCTCTAGTGAAGAAA+AGG | - | chr5_3:16940146-16940165 | Msa0802520:CDS | 30.0% |
!! | ATTAGCTCTAGTGAAGAAAA+GGG | - | chr5_3:16940147-16940166 | Msa0802520:CDS | 30.0% |
CAGCTTATGTTTCATAGTTA+TGG | - | chr5_3:16940190-16940209 | Msa0802520:CDS | 30.0% | |
AAAGAGTAATCATAGGAATG+TGG | + | chr5_3:16940252-16940271 | None:intergenic | 30.0% | |
! | GCTTCTTTTCGTATATGACA+GGG | + | chr5_3:16936063-16936082 | None:intergenic | 35.0% |
! | TGCTTCTTTTCGTATATGAC+AGG | + | chr5_3:16936064-16936083 | None:intergenic | 35.0% |
!! | TATTTTGGGTCCGTTTGTAT+AGG | - | chr5_3:16936428-16936447 | Msa0802520:CDS | 35.0% |
!! | CAAAAGATAAAGGGAGCATT+TGG | + | chr5_3:16936590-16936609 | None:intergenic | 35.0% |
TTGAGTTCTTCCAAAGAGTA+AGG | + | chr5_3:16936755-16936774 | None:intergenic | 35.0% | |
! | TTACTCTTTGGAAGAACTCA+AGG | - | chr5_3:16936754-16936773 | Msa0802520:intron | 35.0% |
TGCAGTATGGCAACAATTAT+AGG | - | chr5_3:16936954-16936973 | Msa0802520:CDS | 35.0% | |
AAAAATGTTACCTTGTACCG+CGG | + | chr5_3:16937017-16937036 | None:intergenic | 35.0% | |
!!! | AGATGGACTATTTTGTTGCT+TGG | - | chr5_3:16937087-16937106 | Msa0802520:intron | 35.0% |
GCTATAAATCATCGTTGCAA+AGG | + | chr5_3:16937213-16937232 | None:intergenic | 35.0% | |
! | TGGGATGTATATTTTGTGAG+AGG | - | chr5_3:16937419-16937438 | Msa0802520:intron | 35.0% |
TCCTTCTTAAATACTGGGAT+AGG | + | chr5_3:16937676-16937695 | None:intergenic | 35.0% | |
TCCCAGTATTTAAGAAGGAA+AGG | - | chr5_3:16937677-16937696 | Msa0802520:intron | 35.0% | |
CTCCTTTCCTTCTTAAATAC+TGG | + | chr5_3:16937682-16937701 | None:intergenic | 35.0% | |
!! | AGGAAAGGAGCTCTAAAATT+TGG | - | chr5_3:16937692-16937711 | Msa0802520:intron | 35.0% |
GGTAATGATACCTCATTCTT+TGG | + | chr5_3:16937799-16937818 | None:intergenic | 35.0% | |
ATCAGCAATTCCAAAGAATG+AGG | - | chr5_3:16937852-16937871 | Msa0802520:intron | 35.0% | |
! | AACTGTTTTGCATAGCTTCA+GGG | + | chr5_3:16937929-16937948 | None:intergenic | 35.0% |
! | AAACTGTTTTGCATAGCTTC+AGG | + | chr5_3:16937930-16937949 | None:intergenic | 35.0% |
TCATAACAGCATTTGTCACT+AGG | - | chr5_3:16938005-16938024 | Msa0802520:intron | 35.0% | |
AAACACAGTTTCATTCGTTC+TGG | - | chr5_3:16938058-16938077 | Msa0802520:intron | 35.0% | |
!!! | CAAATGTTTTTTGTTGGGTG+TGG | + | chr5_3:16938096-16938115 | None:intergenic | 35.0% |
!! | AAAAGCGTTAGCTGTTGAAA+AGG | - | chr5_3:16938150-16938169 | Msa0802520:intron | 35.0% |
ACATTGAAGACATCATTGCT+TGG | + | chr5_3:16938195-16938214 | None:intergenic | 35.0% | |
ATGATGTCTTCAATGTCATC+TGG | - | chr5_3:16938199-16938218 | Msa0802520:intron | 35.0% | |
! | CGCATTGACATAATCCTTAA+CGG | - | chr5_3:16938324-16938343 | Msa0802520:intron | 35.0% |
! | TTTGGCTTATAGCAGTAAGT+TGG | - | chr5_3:16938374-16938393 | Msa0802520:intron | 35.0% |
AGGTGAAATCCAATATCATC+TGG | + | chr5_3:16938463-16938482 | None:intergenic | 35.0% | |
!! | CAAGGATCAAACTTTTGGAA+AGG | + | chr5_3:16938506-16938525 | None:intergenic | 35.0% |
AAAATCCAAGTGGAAAAGCA+AGG | + | chr5_3:16938524-16938543 | None:intergenic | 35.0% | |
! | TGCTTTTCCACTTGGATTTT+AGG | - | chr5_3:16938524-16938543 | Msa0802520:intron | 35.0% |
! | GCTTTTCCACTTGGATTTTA+GGG | - | chr5_3:16938525-16938544 | Msa0802520:intron | 35.0% |
TGGATTTCCATGAAGCTAAA+TGG | - | chr5_3:16938583-16938602 | Msa0802520:intron | 35.0% | |
GGATTTCCATGAAGCTAAAT+GGG | - | chr5_3:16938584-16938603 | Msa0802520:intron | 35.0% | |
AAATACAGAGAGTTCGTTTG+AGG | + | chr5_3:16938665-16938684 | None:intergenic | 35.0% | |
CTGTTTGCATAACGTAAGAT+GGG | - | chr5_3:16938723-16938742 | Msa0802520:intron | 35.0% | |
GTGCCAAAAAAGAAATGAAG+AGG | - | chr5_3:16938785-16938804 | Msa0802520:intron | 35.0% | |
AAACGAAGGGGAATAAGAAT+AGG | - | chr5_3:16938907-16938926 | Msa0802520:intron | 35.0% | |
TAACAACATAGGGGTTTCAA+AGG | + | chr5_3:16939284-16939303 | None:intergenic | 35.0% | |
! | TTTTACACAAGATGCTCTGA+AGG | - | chr5_3:16939666-16939685 | Msa0802520:intron | 35.0% |
ACTTGAAAATCCAAACCTTG+TGG | - | chr5_3:16939867-16939886 | Msa0802520:intron | 35.0% | |
AAATCCAAACCTTGTGGATA+TGG | - | chr5_3:16939873-16939892 | Msa0802520:intron | 35.0% | |
ATTCATCAACCATATCCACA+AGG | + | chr5_3:16939885-16939904 | None:intergenic | 35.0% | |
GGTGTATTCATCAGTAGGAA+GGG | + | chr5_3:16936110-16936129 | None:intergenic | 40.0% | |
!! | TTGTTGATCGATTGGTTCGA+CGG | + | chr5_3:16936131-16936150 | None:intergenic | 40.0% |
TATCCTTCGTAAGCTTGTCA+AGG | - | chr5_3:16936503-16936522 | Msa0802520:intron | 40.0% | |
ATACCTTGACAAGCTTACGA+AGG | + | chr5_3:16936509-16936528 | None:intergenic | 40.0% | |
!! | GATAAAGGGAGCATTTGGAT+TGG | + | chr5_3:16936585-16936604 | None:intergenic | 40.0% |
TTCACTGAGCGAGAGAAATA+AGG | - | chr5_3:16937494-16937513 | Msa0802520:intron | 40.0% | |
TGGTTTCTCACATGCTTTGA+GGG | + | chr5_3:16937651-16937670 | None:intergenic | 40.0% | |
TTGGTTTCTCACATGCTTTG+AGG | + | chr5_3:16937652-16937671 | None:intergenic | 40.0% | |
CTTAAATACTGGGATAGGCT+TGG | + | chr5_3:16937671-16937690 | None:intergenic | 40.0% | |
GCCTATCCCAGTATTTAAGA+AGG | - | chr5_3:16937672-16937691 | Msa0802520:intron | 40.0% | |
! | CTAAAATTTGGAACCCTGAC+TGG | - | chr5_3:16937704-16937723 | Msa0802520:intron | 40.0% |
!! | CATTCTTTGGAATTGCAGAG+TGG | + | chr5_3:16937786-16937805 | None:intergenic | 40.0% |
CTCTGCAATTCCAAAGAATG+AGG | - | chr5_3:16937786-16937805 | Msa0802520:intron | 40.0% | |
ATTTGTCACTAGGATACCTC+TGG | - | chr5_3:16938015-16938034 | Msa0802520:intron | 40.0% | |
TTTGTCACTAGGATACCTCT+GGG | - | chr5_3:16938016-16938035 | Msa0802520:intron | 40.0% | |
! | AACTGTGTTTCTGTGGAAGA+TGG | + | chr5_3:16938048-16938067 | None:intergenic | 40.0% |
! | CGAATGAAACTGTGTTTCTG+TGG | + | chr5_3:16938055-16938074 | None:intergenic | 40.0% |
!!! | TTTTTTGTTGGGTGTGGAAG+TGG | + | chr5_3:16938090-16938109 | None:intergenic | 40.0% |
TGAAGACATCATTGCTTGGA+AGG | + | chr5_3:16938191-16938210 | None:intergenic | 40.0% | |
TCAATGTCATCTGGCATAAG+AGG | - | chr5_3:16938208-16938227 | Msa0802520:intron | 40.0% | |
TGAGTGATTGAATGACAGTG+AGG | - | chr5_3:16938259-16938278 | Msa0802520:intron | 40.0% | |
GTAGCTGAGAAATCAACTTG+AGG | - | chr5_3:16938284-16938303 | Msa0802520:intron | 40.0% | |
TGTCAATGCGTCTTGTGAAT+GGG | + | chr5_3:16938314-16938333 | None:intergenic | 40.0% | |
ATGTCAATGCGTCTTGTGAA+TGG | + | chr5_3:16938315-16938334 | None:intergenic | 40.0% | |
TGATTCATATGCAGCCGTTA+AGG | + | chr5_3:16938341-16938360 | None:intergenic | 40.0% | |
GAAAGGAGTTTACAAAGGGT+GGG | + | chr5_3:16938489-16938508 | None:intergenic | 40.0% | |
!! | TTGATCCTTGCTTTTCCACT+TGG | - | chr5_3:16938516-16938535 | Msa0802520:intron | 40.0% |
CATCATCCCTAAAATCCAAG+TGG | + | chr5_3:16938534-16938553 | None:intergenic | 40.0% | |
! | AAGCTAAATGGGAGCACAAA+TGG | - | chr5_3:16938595-16938614 | Msa0802520:intron | 40.0% |
CATCACATAAGTCTCTTGAG+AGG | - | chr5_3:16938696-16938715 | Msa0802520:intron | 40.0% | |
ACATAAGTCTCTTGAGAGGA+AGG | - | chr5_3:16938700-16938719 | Msa0802520:intron | 40.0% | |
GCTGTTTGCATAACGTAAGA+TGG | - | chr5_3:16938722-16938741 | Msa0802520:intron | 40.0% | |
TTTGCATAACGTAAGATGGG+AGG | - | chr5_3:16938726-16938745 | Msa0802520:intron | 40.0% | |
TTGCATAACGTAAGATGGGA+GGG | - | chr5_3:16938727-16938746 | Msa0802520:intron | 40.0% | |
AAAGATCAAGTGGTCACACA+TGG | - | chr5_3:16938930-16938949 | Msa0802520:intron | 40.0% | |
AAGATCAAGTGGTCACACAT+GGG | - | chr5_3:16938931-16938950 | Msa0802520:intron | 40.0% | |
GCGGGATTAGAAAGCAATTT+AGG | - | chr5_3:16938980-16938999 | Msa0802520:intron | 40.0% | |
! | ATTCTCACCGGTGTCAATTT+GGG | + | chr5_3:16939044-16939063 | None:intergenic | 40.0% |
ACATAGGGAGAAAAGAGAGA+AGG | + | chr5_3:16939413-16939432 | None:intergenic | 40.0% | |
TGCAGTATACACCACACATA+GGG | + | chr5_3:16939428-16939447 | None:intergenic | 40.0% | |
GCATTGCTTCAAGACAGAAA+TGG | + | chr5_3:16939533-16939552 | None:intergenic | 40.0% | |
TCAACCATATCCACAAGGTT+TGG | + | chr5_3:16939880-16939899 | None:intergenic | 40.0% | |
TTCAATCAAAAGATGGCGCA+AGG | + | chr5_3:16939909-16939928 | None:intergenic | 40.0% | |
!! | TTGCGCCATCTTTTGATTGA+AGG | - | chr5_3:16939908-16939927 | Msa0802520:intron | 40.0% |
ACAAGACTCGTAGAATTAGG+AGG | + | chr5_3:16939943-16939962 | None:intergenic | 40.0% | |
TCCTAATTCTACGAGTCTTG+TGG | - | chr5_3:16939942-16939961 | Msa0802520:intron | 40.0% | |
! | CCTAATTCTACGAGTCTTGT+GGG | - | chr5_3:16939943-16939962 | Msa0802520:intron | 40.0% |
CGGTGTATTCATCAGTAGGA+AGG | + | chr5_3:16936111-16936130 | None:intergenic | 45.0% | |
TCGACGGTGTATTCATCAGT+AGG | + | chr5_3:16936115-16936134 | None:intergenic | 45.0% | |
TCCTGAGCATCCTTACTCTT+TGG | - | chr5_3:16936742-16936761 | Msa0802520:intron | 45.0% | |
TCCAAAGAGTAAGGATGCTC+AGG | + | chr5_3:16936746-16936765 | None:intergenic | 45.0% | |
AGAACTCAAGGTGATAACCG+AGG | - | chr5_3:16936766-16936785 | Msa0802520:intron | 45.0% | |
ATACTGCAATGCTCCACTGT+CGG | + | chr5_3:16936942-16936961 | None:intergenic | 45.0% | |
!! | CGAGAGAAATAAGGTGCTGT+AGG | - | chr5_3:16937503-16937522 | Msa0802520:intron | 45.0% |
! | GGGTTTGAGTTTCAGCTCAT+GGG | + | chr5_3:16937631-16937650 | None:intergenic | 45.0% |
! | AGGGTTTGAGTTTCAGCTCA+TGG | + | chr5_3:16937632-16937651 | None:intergenic | 45.0% |
! | ATTTGGAACCCTGACTGGAT+TGG | - | chr5_3:16937709-16937728 | Msa0802520:intron | 45.0% |
TCACAGTTCCAATCCAGTCA+GGG | + | chr5_3:16937720-16937739 | None:intergenic | 45.0% | |
TTCACAGTTCCAATCCAGTC+AGG | + | chr5_3:16937721-16937740 | None:intergenic | 45.0% | |
TAGCTTCAGGGACTGTACTA+AGG | + | chr5_3:16937917-16937936 | None:intergenic | 45.0% | |
GTGATCTCTGTCAGCTATGT+GGG | + | chr5_3:16937966-16937985 | None:intergenic | 45.0% | |
AGTGATCTCTGTCAGCTATG+TGG | + | chr5_3:16937967-16937986 | None:intergenic | 45.0% | |
!! | TGTTGAAAAGGCACCATCTG+AGG | - | chr5_3:16938162-16938181 | Msa0802520:intron | 45.0% |
TGTCATCTGGCATAAGAGGA+TGG | - | chr5_3:16938212-16938231 | Msa0802520:intron | 45.0% | |
GTGATTGAATGACAGTGAGG+AGG | - | chr5_3:16938262-16938281 | Msa0802520:intron | 45.0% | |
!! | CAGTAAGTTGGTTTCCCTAC+TGG | - | chr5_3:16938386-16938405 | Msa0802520:intron | 45.0% |
!! | TAAGTTGGTTTCCCTACTGG+AGG | - | chr5_3:16938389-16938408 | Msa0802520:intron | 45.0% |
! | AAGTTGGTTTCCCTACTGGA+GGG | - | chr5_3:16938390-16938409 | Msa0802520:intron | 45.0% |
ATCATCTGGAGAGCAGGTAA+TGG | + | chr5_3:16938449-16938468 | None:intergenic | 45.0% | |
ACCTGCTCTCCAGATGATAT+TGG | - | chr5_3:16938451-16938470 | Msa0802520:intron | 45.0% | |
TCCAATATCATCTGGAGAGC+AGG | + | chr5_3:16938455-16938474 | None:intergenic | 45.0% | |
AGTTTACAAAGGGTGGGAGA+AGG | + | chr5_3:16938483-16938502 | None:intergenic | 45.0% | |
GGAAAGGAGTTTACAAAGGG+TGG | + | chr5_3:16938490-16938509 | None:intergenic | 45.0% | |
! | TGTGCTCCCATTTAGCTTCA+TGG | + | chr5_3:16938593-16938612 | None:intergenic | 45.0% |
! | AGAAATGAAGAGGCATGGAC+AGG | - | chr5_3:16938795-16938814 | Msa0802520:intron | 45.0% |
ATGGTGTCTTGAGAATGAGC+TGG | - | chr5_3:16938850-16938869 | Msa0802520:intron | 45.0% | |
TCTTGAGAATGAGCTGGCTA+TGG | - | chr5_3:16938856-16938875 | Msa0802520:intron | 45.0% | |
TATGGAAGATGTGCAGTGGA+TGG | - | chr5_3:16938874-16938893 | Msa0802520:intron | 45.0% | |
AGATCAAGTGGTCACACATG+GGG | - | chr5_3:16938932-16938951 | Msa0802520:intron | 45.0% | |
!! | AGGCGGGCTAAAATAGGATT+AGG | - | chr5_3:16938958-16938977 | Msa0802520:intron | 45.0% |
CGGGCTAAAATAGGATTAGG+CGG | - | chr5_3:16938961-16938980 | Msa0802520:intron | 45.0% | |
GGGCTAAAATAGGATTAGGC+GGG | - | chr5_3:16938962-16938981 | Msa0802520:intron | 45.0% | |
! | GATTCTCACCGGTGTCAATT+TGG | + | chr5_3:16939045-16939064 | None:intergenic | 45.0% |
!! | TGGCCTAGTGATATTGGCTT+GGG | + | chr5_3:16939104-16939123 | None:intergenic | 45.0% |
! | TTGGCCTAGTGATATTGGCT+TGG | + | chr5_3:16939105-16939124 | None:intergenic | 45.0% |
!! | TTGGGTTGGCCTAGTGATAT+TGG | + | chr5_3:16939110-16939129 | None:intergenic | 45.0% |
GTCTGCCTAAAAACCCACTT+GGG | + | chr5_3:16939128-16939147 | None:intergenic | 45.0% | |
TGTCTGCCTAAAAACCCACT+TGG | + | chr5_3:16939129-16939148 | None:intergenic | 45.0% | |
! | CTCTCTTTTCTCCCTATGTG+TGG | - | chr5_3:16939414-16939433 | Msa0802520:intron | 45.0% |
GTGCAGTATACACCACACAT+AGG | + | chr5_3:16939429-16939448 | None:intergenic | 45.0% | |
! | CTGCACCCATGTGTTTTATG+AGG | - | chr5_3:16939443-16939462 | Msa0802520:intron | 45.0% |
CCCACAAGACTCGTAGAATT+AGG | + | chr5_3:16939946-16939965 | None:intergenic | 45.0% | |
GTGATAGCTGAGTAGTGTCA+AGG | - | chr5_3:16940114-16940133 | Msa0802520:intron | 45.0% | |
CAAGGTGATAACCGAGGAAG+CGG | - | chr5_3:16936772-16936791 | Msa0802520:intron | 50.0% | |
! | ATCGACTTCAACCGCTTCCT+CGG | + | chr5_3:16936786-16936805 | None:intergenic | 50.0% |
GGTTACGTTTACTCCGACAG+TGG | - | chr5_3:16936926-16936945 | Msa0802520:intron | 50.0% | |
!! | GACAGTGGAGCATTGCAGTA+TGG | - | chr5_3:16936941-16936960 | Msa0802520:CDS | 50.0% |
TCTTGAGAAGTTTGCCTCCG+CGG | - | chr5_3:16936997-16937016 | Msa0802520:intron | 50.0% | |
AATGTTACCTTGTACCGCGG+AGG | + | chr5_3:16937014-16937033 | None:intergenic | 50.0% | |
! | TCAGCTCATGGGTTGCTTGA+AGG | + | chr5_3:16937620-16937639 | None:intergenic | 50.0% |
GTACTAAGGTCAGAGCAGTG+TGG | + | chr5_3:16937903-16937922 | None:intergenic | 50.0% | |
ACTAGGATACCTCTGGGCTT+TGG | - | chr5_3:16938022-16938041 | Msa0802520:intron | 50.0% | |
TGGCTATGGAAGATGTGCAG+TGG | - | chr5_3:16938870-16938889 | Msa0802520:intron | 50.0% | |
AGTGGTCACACATGGGGTTT+AGG | - | chr5_3:16938938-16938957 | Msa0802520:intron | 50.0% | |
!! | GGGTTTAGGCGGGCTAAAAT+AGG | - | chr5_3:16938952-16938971 | Msa0802520:intron | 50.0% |
TAGCCCACCCAAATTGACAC+CGG | - | chr5_3:16939034-16939053 | Msa0802520:intron | 50.0% | |
! | TCACCGGTGTCAATTTGGGT+GGG | + | chr5_3:16939040-16939059 | None:intergenic | 50.0% |
GTCTCAGGTTCGATTCTCAC+CGG | + | chr5_3:16939056-16939075 | None:intergenic | 50.0% | |
GAATCGAACCTGAGACCTCA+AGG | - | chr5_3:16939060-16939079 | Msa0802520:intron | 50.0% | |
! | TGGAAGTGTGTTCCTCCTTG+AGG | + | chr5_3:16939078-16939097 | None:intergenic | 50.0% |
TCAAGGAGGAACACACTTCC+AGG | - | chr5_3:16939077-16939096 | Msa0802520:intron | 50.0% | |
!! | AGTGATATTGGCTTGGGACC+TGG | + | chr5_3:16939098-16939117 | None:intergenic | 50.0% |
GGTCCCAAGCCAATATCACT+AGG | - | chr5_3:16939098-16939117 | Msa0802520:intron | 50.0% | |
TATCACTAGGCCAACCCAAG+TGG | - | chr5_3:16939111-16939130 | Msa0802520:intron | 50.0% | |
ATCACTAGGCCAACCCAAGT+GGG | - | chr5_3:16939112-16939131 | Msa0802520:intron | 50.0% | |
!! | GCCAACCCAAGTGGGTTTTT+AGG | - | chr5_3:16939120-16939139 | Msa0802520:intron | 50.0% |
GCCTAAAAACCCACTTGGGT+TGG | + | chr5_3:16939124-16939143 | None:intergenic | 50.0% | |
TGGTTAGGTGGACATCAGAG+TGG | - | chr5_3:16939342-16939361 | Msa0802520:CDS | 50.0% | |
GCTTCAGTTGCATGAGATCC+AGG | + | chr5_3:16939370-16939389 | None:intergenic | 50.0% | |
TCTCATGCAACTGAAGCTGC+AGG | - | chr5_3:16939373-16939392 | Msa0802520:CDS | 50.0% | |
AAGTTTGCCTCCGCGGTACA+AGG | - | chr5_3:16937004-16937023 | Msa0802520:intron | 55.0% | |
TGCACGGTGCTTAACTGCTC+TGG | - | chr5_3:16937334-16937353 | Msa0802520:intron | 55.0% | |
CTCTGTCAGCTATGTGGGCT+AGG | + | chr5_3:16937961-16937980 | None:intergenic | 55.0% | |
GCTTGGAAGGCAACCTCAGA+TGG | + | chr5_3:16938178-16938197 | None:intergenic | 55.0% | |
TTCCCTACTGGAGGGATCCA+AGG | - | chr5_3:16938398-16938417 | Msa0802520:intron | 55.0% | |
TCCCTACTGGAGGGATCCAA+GGG | - | chr5_3:16938399-16938418 | Msa0802520:intron | 55.0% | |
ACCCTTGGATCCCTCCAGTA+GGG | + | chr5_3:16938403-16938422 | None:intergenic | 55.0% | |
AACCCTTGGATCCCTCCAGT+AGG | + | chr5_3:16938404-16938423 | None:intergenic | 55.0% | |
ATGGCGAGTGGCGAAAACGA+AGG | - | chr5_3:16938893-16938912 | Msa0802520:intron | 55.0% | |
TGGCGAGTGGCGAAAACGAA+GGG | - | chr5_3:16938894-16938913 | Msa0802520:intron | 55.0% | |
GGTCACACATGGGGTTTAGG+CGG | - | chr5_3:16938941-16938960 | Msa0802520:intron | 55.0% | |
GTCACACATGGGGTTTAGGC+GGG | - | chr5_3:16938942-16938961 | Msa0802520:intron | 55.0% | |
! | CTCACCGGTGTCAATTTGGG+TGG | + | chr5_3:16939041-16939060 | None:intergenic | 55.0% |
TCGAACCTGAGACCTCAAGG+AGG | - | chr5_3:16939063-16939082 | Msa0802520:intron | 55.0% | |
GTGTTCCTCCTTGAGGTCTC+AGG | + | chr5_3:16939071-16939090 | None:intergenic | 55.0% | |
GGAAGATGGCCAAAGCCCAG+AGG | + | chr5_3:16938034-16938053 | None:intergenic | 60.0% | |
GATGTGCAGTGGATGGCGAG+TGG | - | chr5_3:16938881-16938900 | Msa0802520:intron | 60.0% | |
GGCGAGTGGCGAAAACGAAG+GGG | - | chr5_3:16938895-16938914 | Msa0802520:intron | 60.0% | |
GTGGACATCAGAGTGGCACC+TGG | - | chr5_3:16939349-16939368 | Msa0802520:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 16936034 | 16940300 | 16936034 | ID=Msa0802520;Name=Msa0802520 |
chr5_3 | mRNA | 16936034 | 16940300 | 16936034 | ID=Msa0802520-mRNA-1;Parent=Msa0802520;Name=Msa0802520-mRNA-1;_AED=0.16;_eAED=0.19;_QI=0|0.66|0.75|1|0|0.5|4|373|136 |
chr5_3 | exon | 16936034 | 16936507 | 16936034 | ID=Msa0802520-mRNA-1:exon:7096;Parent=Msa0802520-mRNA-1 |
chr5_3 | exon | 16936940 | 16936985 | 16936940 | ID=Msa0802520-mRNA-1:exon:7095;Parent=Msa0802520-mRNA-1 |
chr5_3 | exon | 16939309 | 16939408 | 16939309 | ID=Msa0802520-mRNA-1:exon:7094;Parent=Msa0802520-mRNA-1 |
chr5_3 | exon | 16940137 | 16940300 | 16940137 | ID=Msa0802520-mRNA-1:exon:7093;Parent=Msa0802520-mRNA-1 |
chr5_3 | CDS | 16940137 | 16940300 | 16940137 | ID=Msa0802520-mRNA-1:cds;Parent=Msa0802520-mRNA-1 |
chr5_3 | CDS | 16939309 | 16939408 | 16939309 | ID=Msa0802520-mRNA-1:cds;Parent=Msa0802520-mRNA-1 |
chr5_3 | CDS | 16936940 | 16936985 | 16936940 | ID=Msa0802520-mRNA-1:cds;Parent=Msa0802520-mRNA-1 |
chr5_3 | CDS | 16936407 | 16936507 | 16936407 | ID=Msa0802520-mRNA-1:cds;Parent=Msa0802520-mRNA-1 |
chr5_3 | three_prime_UTR | 16936034 | 16936406 | 16936034 | ID=Msa0802520-mRNA-1:three_prime_utr;Parent=Msa0802520-mRNA-1 |
Gene Sequence |
Protein sequence |