AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802520 MtrunA17_Chr5g0410111 98.780 82 1 0 55 136 6 87 2.51e-56 170
Msa0802520 MtrunA17_Chr5g0404021 73.684 76 20 0 56 131 20 95 1.73e-37 123
Msa0802520 MtrunA17_Chr5g0410121 76.667 60 8 1 1 54 1 60 2.39e-21 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802520 AT1G68310.1 64.744 156 29 3 1 131 1 155 1.44e-62 189
Msa0802520 AT1G68310.2 64.286 154 31 2 1 131 1 153 1.23e-61 186
Msa0802520 AT3G50845.1 49.351 154 50 2 1 131 1 149 8.29e-42 136
Msa0802520 AT3G09380.1 46.939 147 61 3 1 131 1 146 1.01e-35 120

Find 38 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCGTTCCCAAAATGGTTTC+TGG 0.240563 5_3:-16940290 None:intergenic
CAATTATAGGTCTTTGTTTA+CGG 0.252751 5_3:-16939345 Msa0802520:CDS
TTGTAGTTCAATATGATTAT+AGG 0.279752 5_3:-16936239 Msa0802520:three_prime_UTR
CAGCTTATGTTTCATAGTTA+TGG 0.289408 5_3:-16936122 Msa0802520:three_prime_UTR
AAATCCAAACCTTGTGGATA+TGG 0.295982 5_3:-16936439 Msa0802520:CDS
TCAACCATATCCACAAGGTT+TGG 0.362140 5_3:+16936435 None:intergenic
AATTATAGGTCTTTGTTTAC+GGG 0.379203 5_3:-16939344 Msa0802520:CDS
TGCAGTATGGCAACAATTAT+AGG 0.383094 5_3:-16939358 Msa0802520:CDS
CCCACAAGACTCGTAGAATT+AGG 0.396254 5_3:+16936369 None:intergenic
TATTAGCTCTAGTGAAGAAA+AGG 0.412957 5_3:-16936166 Msa0802520:three_prime_UTR
AAAATCTCTTGTTGATCGAT+TGG 0.416117 5_3:+16940176 None:intergenic
AGAAAATAAAGAGTAATCAT+AGG 0.431425 5_3:+16936056 None:intergenic
TTGTTGATCGATTGGTTCGA+CGG 0.448440 5_3:+16940184 None:intergenic
GCTTCAGTTGCATGAGATCC+AGG 0.451024 5_3:+16936945 None:intergenic
GACAGTGGAGCATTGCAGTA+TGG 0.452564 5_3:-16939371 Msa0802520:CDS
CCTAATTCTACGAGTCTTGT+GGG 0.472596 5_3:-16936369 Msa0802520:three_prime_UTR
GAACTACAATTACATGTAGT+AGG 0.475009 5_3:+16936253 None:intergenic
TCCTAATTCTACGAGTCTTG+TGG 0.475328 5_3:-16936370 Msa0802520:three_prime_UTR
AAATAAAGTTGAACGACTAC+TGG 0.486648 5_3:+16936329 None:intergenic
GGTTACGTTTACTCCGACAG+TGG 0.525455 5_3:-16939386 Msa0802520:CDS
AAGTTTGCCTCCGCGGTACA+AGG 0.534884 5_3:-16939308 Msa0802520:intron
CGGTGTATTCATCAGTAGGA+AGG 0.543907 5_3:+16940204 None:intergenic
TCTCATGCAACTGAAGCTGC+AGG 0.547140 5_3:-16936939 Msa0802520:intron
ATTAGCTCTAGTGAAGAAAA+GGG 0.549687 5_3:-16936165 Msa0802520:three_prime_UTR
AAGTTCCTTCAATCAAAAGA+TGG 0.559241 5_3:+16936399 None:intergenic
GTGGACATCAGAGTGGCACC+TGG 0.564431 5_3:-16936963 Msa0802520:CDS
TTCAATCAAAAGATGGCGCA+AGG 0.585537 5_3:+16936406 None:intergenic
TCGACGGTGTATTCATCAGT+AGG 0.588668 5_3:+16940200 None:intergenic
AAAGAGTAATCATAGGAATG+TGG 0.606131 5_3:+16936063 None:intergenic
GGTGTATTCATCAGTAGGAA+GGG 0.618099 5_3:+16940205 None:intergenic
TCTTGAGAAGTTTGCCTCCG+CGG 0.619410 5_3:-16939315 Msa0802520:CDS
ATACTGCAATGCTCCACTGT+CGG 0.626893 5_3:+16939373 None:intergenic
GTGATAGCTGAGTAGTGTCA+AGG 0.635776 5_3:-16936198 Msa0802520:three_prime_UTR
ACAAGACTCGTAGAATTAGG+AGG 0.644675 5_3:+16936372 None:intergenic
TGGTTAGGTGGACATCAGAG+TGG 0.646704 5_3:-16936970 Msa0802520:intron
ACTTGAAAATCCAAACCTTG+TGG 0.649054 5_3:-16936445 Msa0802520:CDS
AATGTTACCTTGTACCGCGG+AGG 0.685456 5_3:+16939301 None:intergenic
ATTCATCAACCATATCCACA+AGG 0.710416 5_3:+16936430 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTGGATTATTTTTATTT+AGG - chr5_3:16936904-16936923 Msa0802520:intron 10.0%
!!! TATTGGATTATTTTTATTTA+GGG - chr5_3:16936905-16936924 Msa0802520:intron 10.0%
!!! ATATTATTGATTATTCTTTA+AGG + chr5_3:16937391-16937410 None:intergenic 10.0%
!! ATTTATGTGTTTAAAAAATA+TGG + chr5_3:16939224-16939243 None:intergenic 10.0%
!! ATTTAGAAAGAAAAAGTAAA+AGG + chr5_3:16936168-16936187 None:intergenic 15.0%
!! TTTCTATAACAAAAGATAAA+GGG + chr5_3:16936599-16936618 None:intergenic 15.0%
!! ATTTCTATAACAAAAGATAA+AGG + chr5_3:16936600-16936619 None:intergenic 15.0%
!! ATATGATTTAAGAATTGTTA+AGG + chr5_3:16936707-16936726 None:intergenic 15.0%
!!! TAATTTAGTTTACTAATAGA+TGG - chr5_3:16937070-16937089 Msa0802520:intron 15.0%
!!! TTTATTATTTCTGTTTTAAG+AGG + chr5_3:16937533-16937552 None:intergenic 15.0%
!!! ATATAACATAATTTTATAGC+AGG + chr5_3:16937820-16937839 None:intergenic 15.0%
!! AATCAGTTAAAGAAAAAATT+TGG - chr5_3:16938356-16938375 Msa0802520:intron 15.0%
!! GAAATATTTAATGATTTAAG+AGG - chr5_3:16938753-16938772 Msa0802520:intron 15.0%
!!! TTTGTATGATATTTTTGTTT+TGG - chr5_3:16940003-16940022 Msa0802520:intron 15.0%
!!! AGTGATAATGAAACAAAAAA+TGG + chr5_3:16936192-16936211 None:intergenic 20.0%
!!! TGTTTCATTATCACTTTTAT+TGG - chr5_3:16936197-16936216 Msa0802520:three_prime_UTR 20.0%
!!! AAGGCAATTTTACTTTATTT+TGG - chr5_3:16936413-16936432 Msa0802520:CDS 20.0%
!!! AGGCAATTTTACTTTATTTT+GGG - chr5_3:16936414-16936433 Msa0802520:CDS 20.0%
!! AAATCATATAAGAGATATCA+AGG - chr5_3:16936718-16936737 Msa0802520:intron 20.0%
!! ATTTATTCTTTCCAAGTATT+TGG - chr5_3:16936839-16936858 Msa0802520:intron 20.0%
!!! GATTAATGTGTTTGTTTTAT+TGG - chr5_3:16936888-16936907 Msa0802520:intron 20.0%
!! TTATAGCATAACATAAAATG+TGG - chr5_3:16937226-16937245 Msa0802520:intron 20.0%
!! ATAACACAAAATATTGGAAT+TGG + chr5_3:16937258-16937277 None:intergenic 20.0%
!!! ATTCCAATATTTTGTGTTAT+TGG - chr5_3:16937258-16937277 Msa0802520:intron 20.0%
!!! TTCCAATATTTTGTGTTATT+GGG - chr5_3:16937259-16937278 Msa0802520:intron 20.0%
!! ATTGTAACTTTAATATTGCA+CGG - chr5_3:16937318-16937337 Msa0802520:intron 20.0%
!! TTTGATTATCAGATAAAGAT+AGG - chr5_3:16937590-16937609 Msa0802520:intron 20.0%
!!! TAACACAAATGTTTTTTGTT+GGG + chr5_3:16938101-16938120 None:intergenic 20.0%
!! AACCAAATATTAACAACATA+GGG + chr5_3:16939294-16939313 None:intergenic 20.0%
!! AAACCAAATATTAACAACAT+AGG + chr5_3:16939295-16939314 None:intergenic 20.0%
!!! TCTTGATGATTTCTAAATTT+TGG - chr5_3:16939322-16939341 Msa0802520:CDS 20.0%
!!! ATGATTTCTAAATTTTGGTT+AGG - chr5_3:16939327-16939346 Msa0802520:CDS 20.0%
!!! CCTTAGATTTAGATTATTTT+GGG - chr5_3:16939592-16939611 Msa0802520:intron 20.0%
!!! CTTAGATTTAGATTATTTTG+GGG - chr5_3:16939593-16939612 Msa0802520:intron 20.0%
!!! GATTTGATACTTTGTTTTAT+TGG - chr5_3:16939632-16939651 Msa0802520:intron 20.0%
!! TAAGAATTTAAAGAAACATG+TGG + chr5_3:16939709-16939728 None:intergenic 20.0%
!! TTGTAGTTCAATATGATTAT+AGG - chr5_3:16940073-16940092 Msa0802520:intron 20.0%
!! AGAAAATAAAGAGTAATCAT+AGG + chr5_3:16940259-16940278 None:intergenic 20.0%
!! AAATTGATTTAGAGCATGTT+TGG - chr5_3:16936245-16936264 Msa0802520:three_prime_UTR 25.0%
!!! TAAGCTGTTTTCATAAACTA+TGG + chr5_3:16936389-16936408 None:intergenic 25.0%
! TATGAAAACAGCTTATATGA+AGG - chr5_3:16936394-16936413 Msa0802520:exon 25.0%
! CAAAAATAAGCCTATACAAA+CGG + chr5_3:16936441-16936460 None:intergenic 25.0%
! ATGATCAAAAAAGTTATGTC+AGG - chr5_3:16936804-16936823 Msa0802520:intron 25.0%
!! CAATTATAGGTCTTTGTTTA+CGG - chr5_3:16936967-16936986 Msa0802520:intron 25.0%
!! AATTATAGGTCTTTGTTTAC+GGG - chr5_3:16936968-16936987 Msa0802520:intron 25.0%
!! TGTTGCTTGGTAATATATAA+TGG - chr5_3:16937100-16937119 Msa0802520:intron 25.0%
! AATCAATAATATGAAACGCA+TGG - chr5_3:16937399-16937418 Msa0802520:intron 25.0%
! ATCAATAATATGAAACGCAT+GGG - chr5_3:16937400-16937419 Msa0802520:intron 25.0%
!!! AGACAGATATTCTGTTTTAA+GGG + chr5_3:16937571-16937590 None:intergenic 25.0%
!! AAGACAGATATTCTGTTTTA+AGG + chr5_3:16937572-16937591 None:intergenic 25.0%
! GTATCATTATCTGCTATAAA+GGG - chr5_3:16937874-16937893 Msa0802520:intron 25.0%
!!! GTAACACAAATGTTTTTTGT+TGG + chr5_3:16938102-16938121 None:intergenic 25.0%
!! ATGCTAAATGAACATGATTT+TGG - chr5_3:16938627-16938646 Msa0802520:intron 25.0%
!!! AAATGAACATGATTTTGGTT+TGG - chr5_3:16938632-16938651 Msa0802520:intron 25.0%
! AGTAGATAGAGTTGTTATAT+AGG - chr5_3:16938823-16938842 Msa0802520:intron 25.0%
! GTAGATAGAGTTGTTATATA+GGG - chr5_3:16938824-16938843 Msa0802520:intron 25.0%
! TCATGCAATCTGTAATTAAT+TGG + chr5_3:16939248-16939267 None:intergenic 25.0%
! ACCAAATATTAACAACATAG+GGG + chr5_3:16939293-16939312 None:intergenic 25.0%
!!! ATTTCTAAATTTTGGTTAGG+TGG - chr5_3:16939330-16939349 Msa0802520:CDS 25.0%
! AAAATCCTCATAAAACACAT+GGG + chr5_3:16939451-16939470 None:intergenic 25.0%
!! AGATCAGATATTTAAAGTAC+AGG + chr5_3:16939482-16939501 None:intergenic 25.0%
!! GCCTTAGATTTAGATTATTT+TGG - chr5_3:16939591-16939610 Msa0802520:intron 25.0%
! CCCAAAATAATCTAAATCTA+AGG + chr5_3:16939595-16939614 None:intergenic 25.0%
AAAATCTCTTGTTGATCGAT+TGG + chr5_3:16936139-16936158 None:intergenic 30.0%
TCAAATTCTTCTTATGTGAG+TGG + chr5_3:16936291-16936310 None:intergenic 30.0%
CTGAAAACAACTTATGAACA+TGG + chr5_3:16936345-16936364 None:intergenic 30.0%
CCAAGTATAAACCAAATACT+TGG + chr5_3:16936853-16936872 None:intergenic 30.0%
! CCAAGTATTTGGTTTATACT+TGG - chr5_3:16936850-16936869 Msa0802520:intron 30.0%
! TATTTGGTTTATACTTGGTG+TGG - chr5_3:16936855-16936874 Msa0802520:intron 30.0%
!! TTTATACTTGGTGTGGATTA+TGG - chr5_3:16936862-16936881 Msa0802520:intron 30.0%
AGCATAACATAAAATGTGGT+AGG - chr5_3:16937230-16937249 Msa0802520:intron 30.0%
CTCCCAATAACACAAAATAT+TGG + chr5_3:16937264-16937283 None:intergenic 30.0%
!! GACAGATATTCTGTTTTAAG+GGG + chr5_3:16937570-16937589 None:intergenic 30.0%
TCCTTTCCTTCTTAAATACT+GGG + chr5_3:16937681-16937700 None:intergenic 30.0%
GATAATGATACCTCATTCTT+TGG + chr5_3:16937865-16937884 None:intergenic 30.0%
GGTATCATTATCTGCTATAA+AGG - chr5_3:16937873-16937892 Msa0802520:intron 30.0%
CAAATGCTGTTATGAAAAAG+AGG + chr5_3:16938000-16938019 None:intergenic 30.0%
!! CGCTTTTAATTCTATTTTGC+AGG + chr5_3:16938137-16938156 None:intergenic 30.0%
TTAATTTCTTGAGTAACCCT+TGG + chr5_3:16938418-16938437 None:intergenic 30.0%
TTTGGAAAGGAGTTTACAAA+GGG + chr5_3:16938493-16938512 None:intergenic 30.0%
!! TTTTGGAAAGGAGTTTACAA+AGG + chr5_3:16938494-16938513 None:intergenic 30.0%
! AAAAGCAAGGATCAAACTTT+TGG + chr5_3:16938511-16938530 None:intergenic 30.0%
! CTTTTGTATGTAGATGTCAA+TGG - chr5_3:16938563-16938582 Msa0802520:intron 30.0%
TCATGTTCATTTAGCATCAT+GGG + chr5_3:16938624-16938643 None:intergenic 30.0%
ATCATGTTCATTTAGCATCA+TGG + chr5_3:16938625-16938644 None:intergenic 30.0%
ACTTATGTGATGATTTAGAC+AGG + chr5_3:16938688-16938707 None:intergenic 30.0%
!!! ATGCCTCTTCATTTCTTTTT+TGG + chr5_3:16938791-16938810 None:intergenic 30.0%
AAAAAAGAAATGAAGAGGCA+TGG - chr5_3:16938790-16938809 Msa0802520:intron 30.0%
GAGTTGTTATATAGGGAAAA+TGG - chr5_3:16938831-16938850 Msa0802520:intron 30.0%
TAAGAATAGGAAAGATCAAG+TGG - chr5_3:16938920-16938939 Msa0802520:intron 30.0%
TTTAGGCAGACAAACTTATA+AGG - chr5_3:16939137-16939156 Msa0802520:intron 30.0%
ACCCCTATGTTGTTAATATT+TGG - chr5_3:16939289-16939308 Msa0802520:intron 30.0%
CAAAATCCTCATAAAACACA+TGG + chr5_3:16939452-16939471 None:intergenic 30.0%
AAGTTCCTTCAATCAAAAGA+TGG + chr5_3:16939916-16939935 None:intergenic 30.0%
AAATAAAGTTGAACGACTAC+TGG + chr5_3:16939986-16940005 None:intergenic 30.0%
!!! ATTTTTGTTTTGGATTGCTG+AGG - chr5_3:16940013-16940032 Msa0802520:intron 30.0%
GAACTACAATTACATGTAGT+AGG + chr5_3:16940062-16940081 None:intergenic 30.0%
!! TATTAGCTCTAGTGAAGAAA+AGG - chr5_3:16940146-16940165 Msa0802520:CDS 30.0%
!! ATTAGCTCTAGTGAAGAAAA+GGG - chr5_3:16940147-16940166 Msa0802520:CDS 30.0%
CAGCTTATGTTTCATAGTTA+TGG - chr5_3:16940190-16940209 Msa0802520:CDS 30.0%
AAAGAGTAATCATAGGAATG+TGG + chr5_3:16940252-16940271 None:intergenic 30.0%
! GCTTCTTTTCGTATATGACA+GGG + chr5_3:16936063-16936082 None:intergenic 35.0%
! TGCTTCTTTTCGTATATGAC+AGG + chr5_3:16936064-16936083 None:intergenic 35.0%
!! TATTTTGGGTCCGTTTGTAT+AGG - chr5_3:16936428-16936447 Msa0802520:CDS 35.0%
!! CAAAAGATAAAGGGAGCATT+TGG + chr5_3:16936590-16936609 None:intergenic 35.0%
TTGAGTTCTTCCAAAGAGTA+AGG + chr5_3:16936755-16936774 None:intergenic 35.0%
! TTACTCTTTGGAAGAACTCA+AGG - chr5_3:16936754-16936773 Msa0802520:intron 35.0%
TGCAGTATGGCAACAATTAT+AGG - chr5_3:16936954-16936973 Msa0802520:CDS 35.0%
AAAAATGTTACCTTGTACCG+CGG + chr5_3:16937017-16937036 None:intergenic 35.0%
!!! AGATGGACTATTTTGTTGCT+TGG - chr5_3:16937087-16937106 Msa0802520:intron 35.0%
GCTATAAATCATCGTTGCAA+AGG + chr5_3:16937213-16937232 None:intergenic 35.0%
! TGGGATGTATATTTTGTGAG+AGG - chr5_3:16937419-16937438 Msa0802520:intron 35.0%
TCCTTCTTAAATACTGGGAT+AGG + chr5_3:16937676-16937695 None:intergenic 35.0%
TCCCAGTATTTAAGAAGGAA+AGG - chr5_3:16937677-16937696 Msa0802520:intron 35.0%
CTCCTTTCCTTCTTAAATAC+TGG + chr5_3:16937682-16937701 None:intergenic 35.0%
!! AGGAAAGGAGCTCTAAAATT+TGG - chr5_3:16937692-16937711 Msa0802520:intron 35.0%
GGTAATGATACCTCATTCTT+TGG + chr5_3:16937799-16937818 None:intergenic 35.0%
ATCAGCAATTCCAAAGAATG+AGG - chr5_3:16937852-16937871 Msa0802520:intron 35.0%
! AACTGTTTTGCATAGCTTCA+GGG + chr5_3:16937929-16937948 None:intergenic 35.0%
! AAACTGTTTTGCATAGCTTC+AGG + chr5_3:16937930-16937949 None:intergenic 35.0%
TCATAACAGCATTTGTCACT+AGG - chr5_3:16938005-16938024 Msa0802520:intron 35.0%
AAACACAGTTTCATTCGTTC+TGG - chr5_3:16938058-16938077 Msa0802520:intron 35.0%
!!! CAAATGTTTTTTGTTGGGTG+TGG + chr5_3:16938096-16938115 None:intergenic 35.0%
!! AAAAGCGTTAGCTGTTGAAA+AGG - chr5_3:16938150-16938169 Msa0802520:intron 35.0%
ACATTGAAGACATCATTGCT+TGG + chr5_3:16938195-16938214 None:intergenic 35.0%
ATGATGTCTTCAATGTCATC+TGG - chr5_3:16938199-16938218 Msa0802520:intron 35.0%
! CGCATTGACATAATCCTTAA+CGG - chr5_3:16938324-16938343 Msa0802520:intron 35.0%
! TTTGGCTTATAGCAGTAAGT+TGG - chr5_3:16938374-16938393 Msa0802520:intron 35.0%
AGGTGAAATCCAATATCATC+TGG + chr5_3:16938463-16938482 None:intergenic 35.0%
!! CAAGGATCAAACTTTTGGAA+AGG + chr5_3:16938506-16938525 None:intergenic 35.0%
AAAATCCAAGTGGAAAAGCA+AGG + chr5_3:16938524-16938543 None:intergenic 35.0%
! TGCTTTTCCACTTGGATTTT+AGG - chr5_3:16938524-16938543 Msa0802520:intron 35.0%
! GCTTTTCCACTTGGATTTTA+GGG - chr5_3:16938525-16938544 Msa0802520:intron 35.0%
TGGATTTCCATGAAGCTAAA+TGG - chr5_3:16938583-16938602 Msa0802520:intron 35.0%
GGATTTCCATGAAGCTAAAT+GGG - chr5_3:16938584-16938603 Msa0802520:intron 35.0%
AAATACAGAGAGTTCGTTTG+AGG + chr5_3:16938665-16938684 None:intergenic 35.0%
CTGTTTGCATAACGTAAGAT+GGG - chr5_3:16938723-16938742 Msa0802520:intron 35.0%
GTGCCAAAAAAGAAATGAAG+AGG - chr5_3:16938785-16938804 Msa0802520:intron 35.0%
AAACGAAGGGGAATAAGAAT+AGG - chr5_3:16938907-16938926 Msa0802520:intron 35.0%
TAACAACATAGGGGTTTCAA+AGG + chr5_3:16939284-16939303 None:intergenic 35.0%
! TTTTACACAAGATGCTCTGA+AGG - chr5_3:16939666-16939685 Msa0802520:intron 35.0%
ACTTGAAAATCCAAACCTTG+TGG - chr5_3:16939867-16939886 Msa0802520:intron 35.0%
AAATCCAAACCTTGTGGATA+TGG - chr5_3:16939873-16939892 Msa0802520:intron 35.0%
ATTCATCAACCATATCCACA+AGG + chr5_3:16939885-16939904 None:intergenic 35.0%
GGTGTATTCATCAGTAGGAA+GGG + chr5_3:16936110-16936129 None:intergenic 40.0%
!! TTGTTGATCGATTGGTTCGA+CGG + chr5_3:16936131-16936150 None:intergenic 40.0%
TATCCTTCGTAAGCTTGTCA+AGG - chr5_3:16936503-16936522 Msa0802520:intron 40.0%
ATACCTTGACAAGCTTACGA+AGG + chr5_3:16936509-16936528 None:intergenic 40.0%
!! GATAAAGGGAGCATTTGGAT+TGG + chr5_3:16936585-16936604 None:intergenic 40.0%
TTCACTGAGCGAGAGAAATA+AGG - chr5_3:16937494-16937513 Msa0802520:intron 40.0%
TGGTTTCTCACATGCTTTGA+GGG + chr5_3:16937651-16937670 None:intergenic 40.0%
TTGGTTTCTCACATGCTTTG+AGG + chr5_3:16937652-16937671 None:intergenic 40.0%
CTTAAATACTGGGATAGGCT+TGG + chr5_3:16937671-16937690 None:intergenic 40.0%
GCCTATCCCAGTATTTAAGA+AGG - chr5_3:16937672-16937691 Msa0802520:intron 40.0%
! CTAAAATTTGGAACCCTGAC+TGG - chr5_3:16937704-16937723 Msa0802520:intron 40.0%
!! CATTCTTTGGAATTGCAGAG+TGG + chr5_3:16937786-16937805 None:intergenic 40.0%
CTCTGCAATTCCAAAGAATG+AGG - chr5_3:16937786-16937805 Msa0802520:intron 40.0%
ATTTGTCACTAGGATACCTC+TGG - chr5_3:16938015-16938034 Msa0802520:intron 40.0%
TTTGTCACTAGGATACCTCT+GGG - chr5_3:16938016-16938035 Msa0802520:intron 40.0%
! AACTGTGTTTCTGTGGAAGA+TGG + chr5_3:16938048-16938067 None:intergenic 40.0%
! CGAATGAAACTGTGTTTCTG+TGG + chr5_3:16938055-16938074 None:intergenic 40.0%
!!! TTTTTTGTTGGGTGTGGAAG+TGG + chr5_3:16938090-16938109 None:intergenic 40.0%
TGAAGACATCATTGCTTGGA+AGG + chr5_3:16938191-16938210 None:intergenic 40.0%
TCAATGTCATCTGGCATAAG+AGG - chr5_3:16938208-16938227 Msa0802520:intron 40.0%
TGAGTGATTGAATGACAGTG+AGG - chr5_3:16938259-16938278 Msa0802520:intron 40.0%
GTAGCTGAGAAATCAACTTG+AGG - chr5_3:16938284-16938303 Msa0802520:intron 40.0%
TGTCAATGCGTCTTGTGAAT+GGG + chr5_3:16938314-16938333 None:intergenic 40.0%
ATGTCAATGCGTCTTGTGAA+TGG + chr5_3:16938315-16938334 None:intergenic 40.0%
TGATTCATATGCAGCCGTTA+AGG + chr5_3:16938341-16938360 None:intergenic 40.0%
GAAAGGAGTTTACAAAGGGT+GGG + chr5_3:16938489-16938508 None:intergenic 40.0%
!! TTGATCCTTGCTTTTCCACT+TGG - chr5_3:16938516-16938535 Msa0802520:intron 40.0%
CATCATCCCTAAAATCCAAG+TGG + chr5_3:16938534-16938553 None:intergenic 40.0%
! AAGCTAAATGGGAGCACAAA+TGG - chr5_3:16938595-16938614 Msa0802520:intron 40.0%
CATCACATAAGTCTCTTGAG+AGG - chr5_3:16938696-16938715 Msa0802520:intron 40.0%
ACATAAGTCTCTTGAGAGGA+AGG - chr5_3:16938700-16938719 Msa0802520:intron 40.0%
GCTGTTTGCATAACGTAAGA+TGG - chr5_3:16938722-16938741 Msa0802520:intron 40.0%
TTTGCATAACGTAAGATGGG+AGG - chr5_3:16938726-16938745 Msa0802520:intron 40.0%
TTGCATAACGTAAGATGGGA+GGG - chr5_3:16938727-16938746 Msa0802520:intron 40.0%
AAAGATCAAGTGGTCACACA+TGG - chr5_3:16938930-16938949 Msa0802520:intron 40.0%
AAGATCAAGTGGTCACACAT+GGG - chr5_3:16938931-16938950 Msa0802520:intron 40.0%
GCGGGATTAGAAAGCAATTT+AGG - chr5_3:16938980-16938999 Msa0802520:intron 40.0%
! ATTCTCACCGGTGTCAATTT+GGG + chr5_3:16939044-16939063 None:intergenic 40.0%
ACATAGGGAGAAAAGAGAGA+AGG + chr5_3:16939413-16939432 None:intergenic 40.0%
TGCAGTATACACCACACATA+GGG + chr5_3:16939428-16939447 None:intergenic 40.0%
GCATTGCTTCAAGACAGAAA+TGG + chr5_3:16939533-16939552 None:intergenic 40.0%
TCAACCATATCCACAAGGTT+TGG + chr5_3:16939880-16939899 None:intergenic 40.0%
TTCAATCAAAAGATGGCGCA+AGG + chr5_3:16939909-16939928 None:intergenic 40.0%
!! TTGCGCCATCTTTTGATTGA+AGG - chr5_3:16939908-16939927 Msa0802520:intron 40.0%
ACAAGACTCGTAGAATTAGG+AGG + chr5_3:16939943-16939962 None:intergenic 40.0%
TCCTAATTCTACGAGTCTTG+TGG - chr5_3:16939942-16939961 Msa0802520:intron 40.0%
! CCTAATTCTACGAGTCTTGT+GGG - chr5_3:16939943-16939962 Msa0802520:intron 40.0%
CGGTGTATTCATCAGTAGGA+AGG + chr5_3:16936111-16936130 None:intergenic 45.0%
TCGACGGTGTATTCATCAGT+AGG + chr5_3:16936115-16936134 None:intergenic 45.0%
TCCTGAGCATCCTTACTCTT+TGG - chr5_3:16936742-16936761 Msa0802520:intron 45.0%
TCCAAAGAGTAAGGATGCTC+AGG + chr5_3:16936746-16936765 None:intergenic 45.0%
AGAACTCAAGGTGATAACCG+AGG - chr5_3:16936766-16936785 Msa0802520:intron 45.0%
ATACTGCAATGCTCCACTGT+CGG + chr5_3:16936942-16936961 None:intergenic 45.0%
!! CGAGAGAAATAAGGTGCTGT+AGG - chr5_3:16937503-16937522 Msa0802520:intron 45.0%
! GGGTTTGAGTTTCAGCTCAT+GGG + chr5_3:16937631-16937650 None:intergenic 45.0%
! AGGGTTTGAGTTTCAGCTCA+TGG + chr5_3:16937632-16937651 None:intergenic 45.0%
! ATTTGGAACCCTGACTGGAT+TGG - chr5_3:16937709-16937728 Msa0802520:intron 45.0%
TCACAGTTCCAATCCAGTCA+GGG + chr5_3:16937720-16937739 None:intergenic 45.0%
TTCACAGTTCCAATCCAGTC+AGG + chr5_3:16937721-16937740 None:intergenic 45.0%
TAGCTTCAGGGACTGTACTA+AGG + chr5_3:16937917-16937936 None:intergenic 45.0%
GTGATCTCTGTCAGCTATGT+GGG + chr5_3:16937966-16937985 None:intergenic 45.0%
AGTGATCTCTGTCAGCTATG+TGG + chr5_3:16937967-16937986 None:intergenic 45.0%
!! TGTTGAAAAGGCACCATCTG+AGG - chr5_3:16938162-16938181 Msa0802520:intron 45.0%
TGTCATCTGGCATAAGAGGA+TGG - chr5_3:16938212-16938231 Msa0802520:intron 45.0%
GTGATTGAATGACAGTGAGG+AGG - chr5_3:16938262-16938281 Msa0802520:intron 45.0%
!! CAGTAAGTTGGTTTCCCTAC+TGG - chr5_3:16938386-16938405 Msa0802520:intron 45.0%
!! TAAGTTGGTTTCCCTACTGG+AGG - chr5_3:16938389-16938408 Msa0802520:intron 45.0%
! AAGTTGGTTTCCCTACTGGA+GGG - chr5_3:16938390-16938409 Msa0802520:intron 45.0%
ATCATCTGGAGAGCAGGTAA+TGG + chr5_3:16938449-16938468 None:intergenic 45.0%
ACCTGCTCTCCAGATGATAT+TGG - chr5_3:16938451-16938470 Msa0802520:intron 45.0%
TCCAATATCATCTGGAGAGC+AGG + chr5_3:16938455-16938474 None:intergenic 45.0%
AGTTTACAAAGGGTGGGAGA+AGG + chr5_3:16938483-16938502 None:intergenic 45.0%
GGAAAGGAGTTTACAAAGGG+TGG + chr5_3:16938490-16938509 None:intergenic 45.0%
! TGTGCTCCCATTTAGCTTCA+TGG + chr5_3:16938593-16938612 None:intergenic 45.0%
! AGAAATGAAGAGGCATGGAC+AGG - chr5_3:16938795-16938814 Msa0802520:intron 45.0%
ATGGTGTCTTGAGAATGAGC+TGG - chr5_3:16938850-16938869 Msa0802520:intron 45.0%
TCTTGAGAATGAGCTGGCTA+TGG - chr5_3:16938856-16938875 Msa0802520:intron 45.0%
TATGGAAGATGTGCAGTGGA+TGG - chr5_3:16938874-16938893 Msa0802520:intron 45.0%
AGATCAAGTGGTCACACATG+GGG - chr5_3:16938932-16938951 Msa0802520:intron 45.0%
!! AGGCGGGCTAAAATAGGATT+AGG - chr5_3:16938958-16938977 Msa0802520:intron 45.0%
CGGGCTAAAATAGGATTAGG+CGG - chr5_3:16938961-16938980 Msa0802520:intron 45.0%
GGGCTAAAATAGGATTAGGC+GGG - chr5_3:16938962-16938981 Msa0802520:intron 45.0%
! GATTCTCACCGGTGTCAATT+TGG + chr5_3:16939045-16939064 None:intergenic 45.0%
!! TGGCCTAGTGATATTGGCTT+GGG + chr5_3:16939104-16939123 None:intergenic 45.0%
! TTGGCCTAGTGATATTGGCT+TGG + chr5_3:16939105-16939124 None:intergenic 45.0%
!! TTGGGTTGGCCTAGTGATAT+TGG + chr5_3:16939110-16939129 None:intergenic 45.0%
GTCTGCCTAAAAACCCACTT+GGG + chr5_3:16939128-16939147 None:intergenic 45.0%
TGTCTGCCTAAAAACCCACT+TGG + chr5_3:16939129-16939148 None:intergenic 45.0%
! CTCTCTTTTCTCCCTATGTG+TGG - chr5_3:16939414-16939433 Msa0802520:intron 45.0%
GTGCAGTATACACCACACAT+AGG + chr5_3:16939429-16939448 None:intergenic 45.0%
! CTGCACCCATGTGTTTTATG+AGG - chr5_3:16939443-16939462 Msa0802520:intron 45.0%
CCCACAAGACTCGTAGAATT+AGG + chr5_3:16939946-16939965 None:intergenic 45.0%
GTGATAGCTGAGTAGTGTCA+AGG - chr5_3:16940114-16940133 Msa0802520:intron 45.0%
CAAGGTGATAACCGAGGAAG+CGG - chr5_3:16936772-16936791 Msa0802520:intron 50.0%
! ATCGACTTCAACCGCTTCCT+CGG + chr5_3:16936786-16936805 None:intergenic 50.0%
GGTTACGTTTACTCCGACAG+TGG - chr5_3:16936926-16936945 Msa0802520:intron 50.0%
!! GACAGTGGAGCATTGCAGTA+TGG - chr5_3:16936941-16936960 Msa0802520:CDS 50.0%
TCTTGAGAAGTTTGCCTCCG+CGG - chr5_3:16936997-16937016 Msa0802520:intron 50.0%
AATGTTACCTTGTACCGCGG+AGG + chr5_3:16937014-16937033 None:intergenic 50.0%
! TCAGCTCATGGGTTGCTTGA+AGG + chr5_3:16937620-16937639 None:intergenic 50.0%
GTACTAAGGTCAGAGCAGTG+TGG + chr5_3:16937903-16937922 None:intergenic 50.0%
ACTAGGATACCTCTGGGCTT+TGG - chr5_3:16938022-16938041 Msa0802520:intron 50.0%
TGGCTATGGAAGATGTGCAG+TGG - chr5_3:16938870-16938889 Msa0802520:intron 50.0%
AGTGGTCACACATGGGGTTT+AGG - chr5_3:16938938-16938957 Msa0802520:intron 50.0%
!! GGGTTTAGGCGGGCTAAAAT+AGG - chr5_3:16938952-16938971 Msa0802520:intron 50.0%
TAGCCCACCCAAATTGACAC+CGG - chr5_3:16939034-16939053 Msa0802520:intron 50.0%
! TCACCGGTGTCAATTTGGGT+GGG + chr5_3:16939040-16939059 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCAC+CGG + chr5_3:16939056-16939075 None:intergenic 50.0%
GAATCGAACCTGAGACCTCA+AGG - chr5_3:16939060-16939079 Msa0802520:intron 50.0%
! TGGAAGTGTGTTCCTCCTTG+AGG + chr5_3:16939078-16939097 None:intergenic 50.0%
TCAAGGAGGAACACACTTCC+AGG - chr5_3:16939077-16939096 Msa0802520:intron 50.0%
!! AGTGATATTGGCTTGGGACC+TGG + chr5_3:16939098-16939117 None:intergenic 50.0%
GGTCCCAAGCCAATATCACT+AGG - chr5_3:16939098-16939117 Msa0802520:intron 50.0%
TATCACTAGGCCAACCCAAG+TGG - chr5_3:16939111-16939130 Msa0802520:intron 50.0%
ATCACTAGGCCAACCCAAGT+GGG - chr5_3:16939112-16939131 Msa0802520:intron 50.0%
!! GCCAACCCAAGTGGGTTTTT+AGG - chr5_3:16939120-16939139 Msa0802520:intron 50.0%
GCCTAAAAACCCACTTGGGT+TGG + chr5_3:16939124-16939143 None:intergenic 50.0%
TGGTTAGGTGGACATCAGAG+TGG - chr5_3:16939342-16939361 Msa0802520:CDS 50.0%
GCTTCAGTTGCATGAGATCC+AGG + chr5_3:16939370-16939389 None:intergenic 50.0%
TCTCATGCAACTGAAGCTGC+AGG - chr5_3:16939373-16939392 Msa0802520:CDS 50.0%
AAGTTTGCCTCCGCGGTACA+AGG - chr5_3:16937004-16937023 Msa0802520:intron 55.0%
TGCACGGTGCTTAACTGCTC+TGG - chr5_3:16937334-16937353 Msa0802520:intron 55.0%
CTCTGTCAGCTATGTGGGCT+AGG + chr5_3:16937961-16937980 None:intergenic 55.0%
GCTTGGAAGGCAACCTCAGA+TGG + chr5_3:16938178-16938197 None:intergenic 55.0%
TTCCCTACTGGAGGGATCCA+AGG - chr5_3:16938398-16938417 Msa0802520:intron 55.0%
TCCCTACTGGAGGGATCCAA+GGG - chr5_3:16938399-16938418 Msa0802520:intron 55.0%
ACCCTTGGATCCCTCCAGTA+GGG + chr5_3:16938403-16938422 None:intergenic 55.0%
AACCCTTGGATCCCTCCAGT+AGG + chr5_3:16938404-16938423 None:intergenic 55.0%
ATGGCGAGTGGCGAAAACGA+AGG - chr5_3:16938893-16938912 Msa0802520:intron 55.0%
TGGCGAGTGGCGAAAACGAA+GGG - chr5_3:16938894-16938913 Msa0802520:intron 55.0%
GGTCACACATGGGGTTTAGG+CGG - chr5_3:16938941-16938960 Msa0802520:intron 55.0%
GTCACACATGGGGTTTAGGC+GGG - chr5_3:16938942-16938961 Msa0802520:intron 55.0%
! CTCACCGGTGTCAATTTGGG+TGG + chr5_3:16939041-16939060 None:intergenic 55.0%
TCGAACCTGAGACCTCAAGG+AGG - chr5_3:16939063-16939082 Msa0802520:intron 55.0%
GTGTTCCTCCTTGAGGTCTC+AGG + chr5_3:16939071-16939090 None:intergenic 55.0%
GGAAGATGGCCAAAGCCCAG+AGG + chr5_3:16938034-16938053 None:intergenic 60.0%
GATGTGCAGTGGATGGCGAG+TGG - chr5_3:16938881-16938900 Msa0802520:intron 60.0%
GGCGAGTGGCGAAAACGAAG+GGG - chr5_3:16938895-16938914 Msa0802520:intron 60.0%
GTGGACATCAGAGTGGCACC+TGG - chr5_3:16939349-16939368 Msa0802520:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 16936034 16940300 16936034 ID=Msa0802520;Name=Msa0802520
chr5_3 mRNA 16936034 16940300 16936034 ID=Msa0802520-mRNA-1;Parent=Msa0802520;Name=Msa0802520-mRNA-1;_AED=0.16;_eAED=0.19;_QI=0|0.66|0.75|1|0|0.5|4|373|136
chr5_3 exon 16936034 16936507 16936034 ID=Msa0802520-mRNA-1:exon:7096;Parent=Msa0802520-mRNA-1
chr5_3 exon 16936940 16936985 16936940 ID=Msa0802520-mRNA-1:exon:7095;Parent=Msa0802520-mRNA-1
chr5_3 exon 16939309 16939408 16939309 ID=Msa0802520-mRNA-1:exon:7094;Parent=Msa0802520-mRNA-1
chr5_3 exon 16940137 16940300 16940137 ID=Msa0802520-mRNA-1:exon:7093;Parent=Msa0802520-mRNA-1
chr5_3 CDS 16940137 16940300 16940137 ID=Msa0802520-mRNA-1:cds;Parent=Msa0802520-mRNA-1
chr5_3 CDS 16939309 16939408 16939309 ID=Msa0802520-mRNA-1:cds;Parent=Msa0802520-mRNA-1
chr5_3 CDS 16936940 16936985 16936940 ID=Msa0802520-mRNA-1:cds;Parent=Msa0802520-mRNA-1
chr5_3 CDS 16936407 16936507 16936407 ID=Msa0802520-mRNA-1:cds;Parent=Msa0802520-mRNA-1
chr5_3 three_prime_UTR 16936034 16936406 16936034 ID=Msa0802520-mRNA-1:three_prime_utr;Parent=Msa0802520-mRNA-1
Gene Sequence

>Msa0802520

ATGGTTTCTGGATTAATCAACGCAAACCCTGTCATATACGAAAAGAAGCAACGTCAACAACGTTCTACTCAATCCCTTCCTACTGATGAATACACCGTCGAACCAATCGATCAACAAGAGATTTTTGATATCCTTTTACTTTTTCTTTCTAAATTCCATTTTTTGGTTACGTTTACTCCGACAGTGGAGCATTGCAGTATGGCAACAATTATAGGTCTTTGTTTACGGGTCAAGCTCTTGAGAAGTTTGCCTCCGCGGTACAAGGTGGACATCAGAGTGGCACCTGGATCTCATGCAACTGAAGCTGCAGTTAACAAACAACTAAATGATAAAGAGCGTGTAGCTGCTGCACTTGAAAATCCAAACCTTGTGGATATGGTTGATGAATGCCTTGCGCCATCTTTTGATTGA

Protein sequence

>Msa0802520

MVSGLINANPVIYEKKQRQQRSTQSLPTDEYTVEPIDQQEIFDILLLFLSKFHFLVTFTPTVEHCSMATIIGLCLRVKLLRSLPPRYKVDIRVAPGSHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPSFD*