Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0068740 | XP_039691101.1 | 76.736 | 288 | 9 | 5 | 1 | 233 | 1 | 285 | 4.23e-147 | 421 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0068740 | sp|Q8LAS8|SFGH_ARATH | 64.111 | 287 | 45 | 4 | 1 | 232 | 1 | 284 | 1.00e-121 | 350 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0068740 | A0A072VJD5 | 76.736 | 288 | 9 | 5 | 1 | 233 | 1 | 285 | 5.78e-147 | 420 |
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002230 | Msa0068740 | -0.822950 | 1.800828e-53 | -8.615850e-47 |
Msa0003890 | Msa0068740 | -0.817146 | 3.835345e-52 | -8.615850e-47 |
Msa0006070 | Msa0068740 | -0.823249 | 1.533185e-53 | -8.615850e-47 |
Msa0006110 | Msa0068740 | -0.854797 | 9.687135e-62 | -8.615850e-47 |
Msa0007440 | Msa0068740 | -0.852462 | 4.543675e-61 | -8.615850e-47 |
Msa0011170 | Msa0068740 | -0.812278 | 4.594751e-51 | -8.615850e-47 |
Msa0014710 | Msa0068740 | -0.814973 | 1.172940e-51 | -8.615850e-47 |
Msa0021210 | Msa0068740 | -0.800136 | 1.660705e-48 | -8.615850e-47 |
Msa0026910 | Msa0068740 | -0.808439 | 3.095371e-50 | -8.615850e-47 |
Msa0028660 | Msa0068740 | -0.834319 | 3.209694e-56 | -8.615850e-47 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0068740 | MtrunA17_Chr1g0172851 | 76.736 | 288 | 9 | 5 | 1 | 233 | 1 | 285 | 1.11e-150 | 420 |
Msa0068740 | MtrunA17_Chr1g0173101 | 75.000 | 288 | 14 | 4 | 1 | 233 | 1 | 285 | 1.44e-146 | 410 |
Msa0068740 | MtrunA17_Chr1g0172821 | 98.361 | 61 | 1 | 0 | 173 | 233 | 59 | 119 | 4.57e-39 | 131 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0068740 | AT2G41530.1 | 64.111 | 287 | 45 | 4 | 1 | 232 | 1 | 284 | 1.02e-122 | 350 |
Find 72 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACATTACAGCAACACACT+TGG | 0.589846 | 1_2:-35965215 | Msa0068740:CDS |
AAATTACTTGGAGAGGTGTC+AGG | 0.413673 | 1_2:+35965023 | None:intergenic |
AAGAATTGGGAAAGTAAATG+TGG | 0.532988 | 1_2:+35965177 | None:intergenic |
AAGCACTTGCAAGACTGCTT+GGG | 0.484164 | 1_2:-35960762 | Msa0068740:three_prime_UTR |
AAGCATCATGCTCAAGCTCT+TGG | 0.392695 | 1_2:-35960814 | Msa0068740:CDS |
AAGTTATGACTTAGAAGCTC+TGG | 0.479312 | 1_2:+35963136 | None:intergenic |
AATAAGACACGCGGAGTAAC+TGG | 0.291877 | 1_2:-35965376 | Msa0068740:five_prime_UTR |
AATCATTCCCAGTTCTGTAT+TGG | 0.393676 | 1_2:-35965136 | Msa0068740:CDS |
AATTACTTGGAGAGGTGTCA+GGG | 0.549323 | 1_2:+35965024 | None:intergenic |
AATTCTCATCGGTGCAAGTG+AGG | 0.649677 | 1_2:+35965105 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AAGAATTGGGAAAGTAAATG+TGG | + | chr1_2:35960916-35960935 | None:intergenic | 30.0% | |
TTGTTGGAATCAGAAGAATT+GGG | + | chr1_2:35960929-35960948 | None:intergenic | 30.0% | |
GAGAATTTCATCTTCAAATC+CGG | - | chr1_2:35961001-35961020 | Msa0068740:intron | 30.0% | |
AGAATAGAAATTACTTGGAG+AGG | + | chr1_2:35961077-35961096 | None:intergenic | 30.0% | |
TCACAACAACAAAAAGAGAA+GGG | + | chr1_2:35961242-35961261 | None:intergenic | 30.0% | |
ATGGATTCAAAATACTCGTT+AGG | - | chr1_2:35961598-35961617 | Msa0068740:intron | 30.0% | |
TGAAGATCATATTATGGCAT+AGG | - | chr1_2:35961680-35961699 | Msa0068740:intron | 30.0% | |
TAGATGGACATGTAAATCAT+GGG | - | chr1_2:35961740-35961759 | Msa0068740:intron | 30.0% | |
ATTAAAGTTGTACTGCCAAT+CGG | - | chr1_2:35961930-35961949 | Msa0068740:intron | 30.0% | |
TAATGTAATCTCGCCTAAAA+TGG | - | chr1_2:35961961-35961980 | Msa0068740:intron | 30.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 35960705 | 35965407 | 35960705 | ID=Msa0068740;Name=Msa0068740 |
chr1_2 | mRNA | 35960705 | 35965407 | 35960705 | ID=Msa0068740-mRNA-1;Parent=Msa0068740;Name=Msa0068740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=104|1|1|1|1|1|4|99|233 |
chr1_2 | exon | 35960705 | 35960986 | 35960705 | ID=Msa0068740-mRNA-1:exon:11468;Parent=Msa0068740-mRNA-1 |
chr1_2 | exon | 35963039 | 35963235 | 35963039 | ID=Msa0068740-mRNA-1:exon:11467;Parent=Msa0068740-mRNA-1 |
chr1_2 | exon | 35964886 | 35964933 | 35964886 | ID=Msa0068740-mRNA-1:exon:11466;Parent=Msa0068740-mRNA-1 |
chr1_2 | exon | 35965030 | 35965407 | 35965030 | ID=Msa0068740-mRNA-1:exon:11465;Parent=Msa0068740-mRNA-1 |
chr1_2 | five_prime_UTR | 35965304 | 35965407 | 35965304 | ID=Msa0068740-mRNA-1:five_prime_utr;Parent=Msa0068740-mRNA-1 |
chr1_2 | CDS | 35965030 | 35965303 | 35965030 | ID=Msa0068740-mRNA-1:cds;Parent=Msa0068740-mRNA-1 |
chr1_2 | CDS | 35964886 | 35964933 | 35964886 | ID=Msa0068740-mRNA-1:cds;Parent=Msa0068740-mRNA-1 |
chr1_2 | CDS | 35963039 | 35963235 | 35963039 | ID=Msa0068740-mRNA-1:cds;Parent=Msa0068740-mRNA-1 |
chr1_2 | CDS | 35960804 | 35960986 | 35960804 | ID=Msa0068740-mRNA-1:cds;Parent=Msa0068740-mRNA-1 |
chr1_2 | three_prime_UTR | 35960705 | 35960803 | 35960705 | ID=Msa0068740-mRNA-1:three_prime_utr;Parent=Msa0068740-mRNA-1 |
Gene Sequence |
>Msa0068740 ATGGCAGGAGGAGCAGTGACGGAGTTGAGTAGTGGGAAGATGTTCGGAGGATACAATAAGAGATACAAACATTACAGCAACACACTTGGCTGTTCAATGAACTTCCACATTTACTTTCCCAATTCTTCTGATTCCAACAACAAAAAATCATTCCCAGTTCTGTATTGGCTCTCCGGCCTCACTTGCACCGATGAGAATTTCATCTTCAAATCCGGTGCTCAACGTGCCGCTTCCGAACACGGTGTTGCCTTGATCGCCCCTGACACCTCTCCAAGAGGGTTGAATGTTGAAGGTGAAGCTGATTCCTGGGACTTCGGTGTTGGTGCTGGATTTTATCTCAACGCTACACAAGAGAAATGGAAGAATTGGCGCATGTATGACTATGTTGTCAAGGAATTGCCAGAGCTTCTAAGTCATAACTTTCCACAGCTTGACACATCAAAAGCTTCCATATTTGGCCATTCTATGGGTGGGCATGGTGCACTAACTATCTACCTGAAAAATCTCGATAAATATAAGGGGGAAGATGACAAATTTTTGCATGATCAACTGTTGCCTCACAAGTTCGAAGAGGCATGCAAGAATGGCAATGTTCCACTGCTGTTACGTCTTCAACCTGGTTATGATCACTCCTACTATTTTATTGCCACCTTCATTGATGATCACATCAAGCATCATGCTCAAGCTCTTGGGCTCAATTAA |
Protein sequence |
>Msa0068740 MAGGAVTELSSGKMFGGYNKRYKHYSNTLGCSMNFHIYFPNSSDSNNKKSFPVLYWLSGLTCTDENFIFKSGAQRAASEHGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPELLSHNFPQLDTSKASIFGHSMGGHGALTIYLKNLDKYKGEDDKFLHDQLLPHKFEEACKNGNVPLLLRLQPGYDHSYYFIATFIDDHIKHHAQALGLN* |