Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221960 | ACM50914.1 | 98.258 | 287 | 5 | 0 | 1 | 287 | 1 | 287 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221960 | sp|Q9ATM4|PIP27_MAIZE | 88.889 | 288 | 30 | 2 | 1 | 287 | 1 | 287 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221960 | B9VV95 | 98.258 | 287 | 5 | 0 | 1 | 287 | 1 | 287 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044540 | Msa0221960 | 0.809540 | 1.799228e-50 | -8.615850e-47 |
| Msa0054750 | Msa0221960 | -0.806283 | 8.868825e-50 | -8.615850e-47 |
| Msa0068740 | Msa0221960 | 0.825490 | 4.557321e-54 | -8.615850e-47 |
| Msa0136890 | Msa0221960 | 0.822122 | 2.804792e-53 | -8.615850e-47 |
| Msa0221960 | Msa0345350 | -0.808979 | 2.373006e-50 | -8.615850e-47 |
| Msa0221960 | Msa0382660 | 0.818042 | 2.408825e-52 | -8.615850e-47 |
| Msa0221960 | Msa0463090 | 0.805199 | 1.498344e-49 | -8.615850e-47 |
| Msa0221960 | Msa0727190 | 0.810551 | 1.089543e-50 | -8.615850e-47 |
| Msa0221960 | Msa0802520 | -0.811607 | 6.432974e-51 | -8.615850e-47 |
| Msa0221960 | Msa0929740 | -0.832976 | 6.952060e-56 | -8.615850e-47 |
| Msa0221960 | Msa0966030 | -0.801520 | 8.663283e-49 | -8.615850e-47 |
| Msa0221960 | Msa1174870 | -0.818292 | 2.114755e-52 | -8.615850e-47 |
| Msa0221960 | Msa1234730 | -0.812573 | 3.960181e-51 | -8.615850e-47 |
| Msa0221960 | Msa1315110 | -0.822839 | 1.911230e-53 | -8.615850e-47 |
| Msa0221960 | Msa1335780 | 0.804326 | 2.279713e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221960 | MtrunA17_Chr2g0326621 | 97.213 | 287 | 8 | 0 | 1 | 287 | 1 | 287 | 0.0 | 568 |
| Msa0221960 | MtrunA17_Chr4g0029071 | 85.017 | 287 | 41 | 2 | 1 | 287 | 1 | 285 | 3.06e-179 | 495 |
| Msa0221960 | MtrunA17_Chr7g0264111 | 80.139 | 287 | 55 | 2 | 1 | 287 | 1 | 285 | 2.11e-172 | 478 |
| Msa0221960 | MtrunA17_Chr1g0199731 | 76.923 | 286 | 64 | 2 | 1 | 286 | 1 | 284 | 4.99e-165 | 459 |
| Msa0221960 | MtrunA17_Chr3g0145671 | 77.037 | 270 | 55 | 1 | 17 | 286 | 14 | 276 | 2.34e-153 | 429 |
| Msa0221960 | MtrunA17_Chr8g0386961 | 67.025 | 279 | 82 | 3 | 3 | 278 | 13 | 284 | 3.56e-135 | 384 |
| Msa0221960 | MtrunA17_Chr5g0397391 | 68.148 | 270 | 78 | 2 | 11 | 279 | 23 | 285 | 1.49e-134 | 382 |
| Msa0221960 | MtrunA17_Chr5g0436701 | 68.939 | 264 | 74 | 2 | 17 | 279 | 32 | 288 | 3.95e-133 | 378 |
| Msa0221960 | MtrunA17_Chr4g0006001 | 66.667 | 270 | 83 | 1 | 10 | 279 | 26 | 288 | 7.54e-133 | 378 |
| Msa0221960 | MtrunA17_Chr3g0113211 | 67.803 | 264 | 77 | 2 | 17 | 279 | 32 | 288 | 1.01e-131 | 375 |
| Msa0221960 | MtrunA17_Chr2g0331261 | 37.344 | 241 | 126 | 6 | 40 | 275 | 20 | 240 | 1.09e-39 | 139 |
| Msa0221960 | MtrunA17_Chr1g0212671 | 39.916 | 238 | 118 | 7 | 40 | 272 | 21 | 238 | 2.29e-38 | 135 |
| Msa0221960 | MtrunA17_Chr8g0340161 | 38.462 | 234 | 119 | 6 | 40 | 268 | 19 | 232 | 1.29e-37 | 133 |
| Msa0221960 | MtrunA17_Chr1g0188771 | 38.462 | 234 | 127 | 6 | 40 | 272 | 21 | 238 | 1.56e-36 | 130 |
| Msa0221960 | MtrunA17_Chr5g0399341 | 40.161 | 249 | 129 | 9 | 28 | 275 | 9 | 238 | 4.36e-36 | 129 |
| Msa0221960 | MtrunA17_Chr4g0030861 | 36.992 | 246 | 130 | 7 | 29 | 269 | 10 | 235 | 4.69e-36 | 129 |
| Msa0221960 | MtrunA17_Chr7g0264961 | 35.060 | 251 | 145 | 6 | 31 | 280 | 12 | 245 | 6.51e-35 | 126 |
| Msa0221960 | MtrunA17_Chr7g0222791 | 37.917 | 240 | 124 | 7 | 40 | 274 | 21 | 240 | 2.17e-34 | 125 |
| Msa0221960 | MtrunA17_Chr6g0478191 | 38.462 | 234 | 127 | 6 | 40 | 272 | 21 | 238 | 4.72e-33 | 121 |
| Msa0221960 | MtrunA17_Chr1g0146171 | 34.884 | 258 | 136 | 11 | 30 | 280 | 9 | 241 | 2.01e-31 | 117 |
| Msa0221960 | MtrunA17_Chr1g0146161 | 34.538 | 249 | 135 | 9 | 30 | 273 | 9 | 234 | 5.46e-31 | 116 |
| Msa0221960 | MtrunA17_Chr5g0435051 | 29.368 | 269 | 166 | 7 | 3 | 271 | 4 | 248 | 3.56e-23 | 95.9 |
| Msa0221960 | MtrunA17_Chr5g0426131 | 32.474 | 194 | 118 | 4 | 80 | 271 | 65 | 247 | 1.30e-22 | 94.4 |
| Msa0221960 | MtrunA17_Chr4g0001221 | 29.225 | 284 | 159 | 7 | 9 | 284 | 55 | 304 | 1.56e-21 | 92.0 |
| Msa0221960 | MtrunA17_Chr2g0333771 | 30.667 | 225 | 131 | 6 | 38 | 261 | 78 | 278 | 1.93e-21 | 92.0 |
| Msa0221960 | MtrunA17_Chr8g0379901 | 29.362 | 235 | 142 | 5 | 32 | 265 | 31 | 242 | 3.38e-20 | 87.8 |
| Msa0221960 | MtrunA17_Chr4g0020781 | 35.000 | 200 | 101 | 6 | 80 | 272 | 18 | 195 | 4.17e-20 | 86.3 |
| Msa0221960 | MtrunA17_Chr3g0079421 | 32.812 | 192 | 109 | 5 | 84 | 271 | 59 | 234 | 4.76e-20 | 87.4 |
| Msa0221960 | MtrunA17_Chr2g0284631 | 28.870 | 239 | 138 | 6 | 38 | 271 | 89 | 300 | 1.20e-19 | 87.4 |
| Msa0221960 | MtrunA17_Chr1g0201331 | 30.279 | 251 | 140 | 7 | 37 | 286 | 71 | 287 | 2.65e-19 | 85.9 |
| Msa0221960 | MtrunA17_Chr8g0379911 | 26.749 | 243 | 156 | 5 | 29 | 271 | 27 | 247 | 1.13e-18 | 83.6 |
| Msa0221960 | MtrunA17_Chr2g0284591 | 29.778 | 225 | 134 | 5 | 38 | 261 | 34 | 235 | 3.20e-18 | 82.4 |
| Msa0221960 | MtrunA17_Chr4g0044201 | 31.250 | 192 | 99 | 5 | 84 | 271 | 71 | 233 | 2.04e-17 | 80.1 |
| Msa0221960 | MtrunA17_Chr7g0217331 | 29.114 | 237 | 138 | 7 | 35 | 265 | 27 | 239 | 2.36e-17 | 80.1 |
| Msa0221960 | MtrunA17_Chr2g0284611 | 32.275 | 189 | 115 | 4 | 74 | 261 | 61 | 237 | 9.53e-17 | 78.2 |
| Msa0221960 | MtrunA17_Chr2g0284601 | 31.844 | 179 | 108 | 4 | 84 | 261 | 24 | 189 | 4.34e-16 | 75.5 |
| Msa0221960 | MtrunA17_Chr2g0284581 | 30.337 | 178 | 112 | 3 | 84 | 261 | 72 | 237 | 7.36e-16 | 75.9 |
| Msa0221960 | MtrunA17_Chr1g0184541 | 27.155 | 232 | 146 | 5 | 40 | 271 | 62 | 270 | 3.46e-15 | 74.3 |
| Msa0221960 | MtrunA17_Chr4g0038591 | 26.122 | 245 | 153 | 8 | 31 | 261 | 42 | 272 | 7.34e-15 | 73.6 |
| Msa0221960 | MtrunA17_Chr4g0038611 | 26.923 | 182 | 119 | 6 | 94 | 263 | 32 | 211 | 1.70e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221960 | AT5G60660.1 | 77.193 | 285 | 63 | 2 | 1 | 285 | 1 | 283 | 4.69e-164 | 457 |
| Msa0221960 | AT2G37170.2 | 77.352 | 287 | 61 | 2 | 1 | 287 | 44 | 326 | 2.54e-163 | 457 |
| Msa0221960 | AT2G37170.1 | 77.352 | 287 | 61 | 2 | 1 | 287 | 1 | 283 | 3.94e-163 | 454 |
| Msa0221960 | AT3G53420.1 | 77.352 | 287 | 63 | 2 | 1 | 287 | 1 | 285 | 8.72e-162 | 451 |
| Msa0221960 | AT3G53420.2 | 77.352 | 287 | 63 | 2 | 1 | 287 | 1 | 285 | 8.72e-162 | 451 |
| Msa0221960 | AT2G37180.1 | 75.958 | 287 | 65 | 2 | 1 | 287 | 1 | 283 | 2.92e-160 | 447 |
| Msa0221960 | AT4G35100.1 | 76.241 | 282 | 60 | 1 | 6 | 287 | 4 | 278 | 4.45e-160 | 447 |
| Msa0221960 | AT4G35100.2 | 76.241 | 282 | 60 | 1 | 6 | 287 | 4 | 278 | 4.45e-160 | 447 |
| Msa0221960 | AT3G54820.1 | 73.665 | 281 | 73 | 1 | 6 | 286 | 4 | 283 | 5.62e-157 | 439 |
| Msa0221960 | AT2G39010.1 | 71.678 | 286 | 78 | 2 | 1 | 286 | 1 | 283 | 1.62e-154 | 433 |
| Msa0221960 | AT2G16850.1 | 75.445 | 281 | 60 | 2 | 6 | 286 | 4 | 275 | 3.67e-154 | 432 |
| Msa0221960 | AT4G00430.1 | 68.284 | 268 | 78 | 1 | 12 | 279 | 25 | 285 | 2.34e-135 | 384 |
| Msa0221960 | AT2G45960.1 | 68.441 | 263 | 76 | 1 | 17 | 279 | 29 | 284 | 1.44e-132 | 377 |
| Msa0221960 | AT4G23400.1 | 67.910 | 268 | 79 | 1 | 12 | 279 | 25 | 285 | 9.20e-127 | 362 |
| Msa0221960 | AT1G01620.1 | 69.434 | 265 | 74 | 1 | 15 | 279 | 27 | 284 | 1.50e-126 | 362 |
| Msa0221960 | AT3G61430.2 | 67.681 | 263 | 78 | 1 | 17 | 279 | 29 | 284 | 2.94e-123 | 353 |
| Msa0221960 | AT3G61430.1 | 67.681 | 263 | 78 | 1 | 17 | 279 | 29 | 284 | 2.94e-123 | 353 |
| Msa0221960 | AT2G45960.2 | 70.085 | 234 | 63 | 1 | 17 | 250 | 29 | 255 | 1.19e-118 | 342 |
| Msa0221960 | AT2G45960.3 | 70.085 | 234 | 63 | 1 | 17 | 250 | 29 | 255 | 2.64e-117 | 339 |
| Msa0221960 | AT1G01620.2 | 74.384 | 203 | 52 | 0 | 77 | 279 | 10 | 212 | 6.15e-110 | 317 |
| Msa0221960 | AT2G39010.2 | 68.627 | 204 | 61 | 2 | 1 | 204 | 1 | 201 | 2.21e-99 | 291 |
| Msa0221960 | AT4G00430.2 | 67.513 | 197 | 57 | 1 | 12 | 208 | 25 | 214 | 3.09e-91 | 270 |
| Msa0221960 | AT5G47450.1 | 40.000 | 240 | 127 | 7 | 37 | 275 | 16 | 239 | 1.07e-39 | 139 |
| Msa0221960 | AT3G26520.1 | 38.655 | 238 | 121 | 8 | 40 | 272 | 22 | 239 | 5.02e-38 | 135 |
| Msa0221960 | AT3G16240.1 | 38.189 | 254 | 130 | 8 | 28 | 276 | 9 | 240 | 1.01e-37 | 134 |
| Msa0221960 | AT4G01470.1 | 37.349 | 249 | 131 | 7 | 32 | 275 | 13 | 241 | 2.92e-37 | 133 |
| Msa0221960 | AT4G17340.1 | 38.889 | 252 | 122 | 10 | 32 | 275 | 12 | 239 | 2.83e-35 | 127 |
| Msa0221960 | AT2G36830.1 | 35.802 | 243 | 131 | 8 | 32 | 269 | 13 | 235 | 4.39e-35 | 127 |
| Msa0221960 | AT1G17810.1 | 38.462 | 247 | 130 | 7 | 32 | 272 | 16 | 246 | 5.29e-35 | 127 |
| Msa0221960 | AT1G73190.1 | 39.095 | 243 | 134 | 7 | 32 | 272 | 16 | 246 | 6.55e-35 | 127 |
| Msa0221960 | AT2G25810.1 | 38.525 | 244 | 125 | 10 | 32 | 272 | 11 | 232 | 2.78e-32 | 120 |
| Msa0221960 | AT3G47440.1 | 32.766 | 235 | 138 | 7 | 40 | 272 | 23 | 239 | 1.23e-23 | 97.1 |
| Msa0221960 | AT4G10380.1 | 30.830 | 253 | 146 | 8 | 37 | 284 | 75 | 303 | 2.23e-20 | 89.4 |
| Msa0221960 | AT1G80760.1 | 30.870 | 230 | 134 | 6 | 37 | 265 | 77 | 282 | 5.20e-19 | 85.5 |
| Msa0221960 | AT4G19030.1 | 27.206 | 272 | 164 | 7 | 1 | 265 | 21 | 265 | 1.11e-18 | 84.3 |
| Msa0221960 | AT5G37820.1 | 32.203 | 177 | 108 | 3 | 84 | 260 | 77 | 241 | 3.45e-18 | 82.8 |
| Msa0221960 | AT5G37820.2 | 32.203 | 177 | 108 | 3 | 84 | 260 | 113 | 277 | 4.85e-18 | 83.2 |
| Msa0221960 | AT1G31885.1 | 25.843 | 267 | 168 | 6 | 3 | 261 | 5 | 249 | 5.47e-17 | 80.1 |
| Msa0221960 | AT3G06100.1 | 29.740 | 269 | 159 | 11 | 8 | 271 | 12 | 255 | 9.25e-16 | 75.9 |
| Msa0221960 | AT1G31885.2 | 29.189 | 185 | 112 | 4 | 84 | 261 | 23 | 195 | 3.30e-15 | 74.3 |
| Msa0221960 | AT5G37810.1 | 28.814 | 177 | 114 | 3 | 84 | 260 | 77 | 241 | 1.02e-14 | 73.2 |
| Msa0221960 | AT4G18910.1 | 29.082 | 196 | 127 | 4 | 74 | 265 | 75 | 262 | 2.19e-14 | 72.4 |
| Msa0221960 | AT2G34390.1 | 26.236 | 263 | 157 | 8 | 16 | 271 | 31 | 263 | 5.50e-14 | 71.2 |
| Msa0221960 | AT2G34390.2 | 29.648 | 199 | 120 | 5 | 80 | 271 | 36 | 221 | 7.95e-14 | 70.1 |
| Msa0221960 | AT3G06100.2 | 30.172 | 232 | 134 | 9 | 43 | 271 | 1 | 207 | 5.20e-13 | 67.4 |
Find 113 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGGACCCCATGTAATTT+TGG | 0.167779 | 2_1:-70849691 | None:intergenic |
| TTGGGAATTGCTTGGGCTTT+TGG | 0.184687 | 2_1:+70847781 | Msa0221960:CDS |
| GGCCCTATGTGTTTGGAATT+TGG | 0.200363 | 2_1:+70849654 | Msa0221960:three_prime_UTR |
| ATGATACTGTTATTCTTAAA+AGG | 0.205044 | 2_1:-70849564 | None:intergenic |
| GCTTTAGGTGCTGAAATTAT+TGG | 0.205846 | 2_1:+70848775 | Msa0221960:CDS |
| GAGTAGAAATATGGTATTTA+AGG | 0.224040 | 2_1:-70847432 | None:intergenic |
| TATTGGGTTGGACCATTTAT+TGG | 0.240800 | 2_1:+70849405 | Msa0221960:CDS |
| AATTATTGGTACCTTTGTTT+TGG | 0.281067 | 2_1:+70848789 | Msa0221960:CDS |
| ATGTGATGGTGTTGGTGTTT+TGG | 0.290329 | 2_1:+70847762 | Msa0221960:CDS |
| TTAATACCGGTTCCGGTAAC+GGG | 0.301515 | 2_1:-70849042 | None:intergenic |
| GCCACAGCAGCACCAATAAA+TGG | 0.305067 | 2_1:-70849417 | None:intergenic |
| TACAGCAAAGGCACTGCTTT+AGG | 0.327959 | 2_1:+70848760 | Msa0221960:CDS |
| CTTTAATTGCTGATCCTCTA+AGG | 0.336597 | 2_1:-70849461 | None:intergenic |
| AAATAAAGAAACAAGTAAAA+TGG | 0.337630 | 2_1:-70849864 | None:intergenic |
| GACGCAAGGTGTCTTTAATA+AGG | 0.346429 | 2_1:+70848617 | Msa0221960:CDS |
| TACATAGTTGCACAGTGTTT+AGG | 0.361176 | 2_1:+70848649 | Msa0221960:CDS |
| ATTAATCCGGCTGTGACCTT+TGG | 0.362163 | 2_1:+70848583 | Msa0221960:CDS |
| TACCACCAATACATCCTTAG+AGG | 0.364277 | 2_1:+70849447 | Msa0221960:CDS |
| ATTAACCCTGCCAGGAGTTT+CGG | 0.367349 | 2_1:+70849060 | Msa0221960:CDS |
| TTAAAGCTCTTGGATCCTTC+AGG | 0.374939 | 2_1:+70849478 | Msa0221960:CDS |
| AATTATTATCTATGAGTTGT+TGG | 0.379580 | 2_1:+70849534 | Msa0221960:three_prime_UTR |
| TTGGCTACCATCCCCGTTAC+CGG | 0.382800 | 2_1:+70849030 | Msa0221960:CDS |
| CAAAGTGATACTACTATTGA+TGG | 0.385836 | 2_1:+70847730 | Msa0221960:CDS |
| GAATCCCTAGCACTTCTCTT+AGG | 0.388475 | 2_1:-70848838 | None:intergenic |
| TTGTCTACTATAACCAATAA+TGG | 0.395007 | 2_1:-70847710 | None:intergenic |
| TACTGCACCGCCGGTATCTC+TGG | 0.405894 | 2_1:+70847826 | Msa0221960:CDS |
| ACCTGTTGTAGTATGATGTT+TGG | 0.407309 | 2_1:-70848705 | None:intergenic |
| GGCAGGGTTAATACCGGTTC+CGG | 0.411773 | 2_1:-70849049 | None:intergenic |
| TCTTCTTGTGTTTGAGGTGG+TGG | 0.415319 | 2_1:-70847503 | None:intergenic |
| TTAGGAGCAATTTGTGGTGC+TGG | 0.416402 | 2_1:+70848667 | Msa0221960:CDS |
| GGATCAGCAATTAAAGCTCT+TGG | 0.421288 | 2_1:+70849468 | Msa0221960:CDS |
| GCTTAATGAATGAATATGTT+TGG | 0.422710 | 2_1:+70849507 | Msa0221960:exon |
| ACCATCCCCGTTACCGGAAC+CGG | 0.431862 | 2_1:+70849036 | Msa0221960:CDS |
| TTGATGAATGAGTAGAAATA+TGG | 0.435022 | 2_1:-70847441 | None:intergenic |
| TCCAAACATCATACTACAAC+AGG | 0.436170 | 2_1:+70848704 | Msa0221960:CDS |
| CTTCTTGTGTTTGAGGTGGT+GGG | 0.450550 | 2_1:-70847502 | None:intergenic |
| TGTGACCTTTGGACTATTAG+TGG | 0.454677 | 2_1:+70848594 | Msa0221960:CDS |
| CTGATCCTCTAAGGATGTAT+TGG | 0.458362 | 2_1:-70849452 | None:intergenic |
| TATCTATGAGTTGTTGGTGT+TGG | 0.459167 | 2_1:+70849540 | Msa0221960:three_prime_UTR |
| TCGTAATGGCCCTATGTGTT+TGG | 0.461650 | 2_1:+70849647 | Msa0221960:three_prime_UTR |
| AACACTGTGCAACTATGTAT+AGG | 0.466841 | 2_1:-70848645 | None:intergenic |
| TTTCTCGTTGTTGAAGATAA+CGG | 0.466959 | 2_1:-70849088 | None:intergenic |
| TCTTCAACAACGAGAAAGCC+TGG | 0.469896 | 2_1:+70849094 | Msa0221960:CDS |
| TATGTGTTTGGAATTTGGAT+TGG | 0.469993 | 2_1:+70849659 | Msa0221960:three_prime_UTR |
| ACGCAAGGTGTCTTTAATAA+GGG | 0.480415 | 2_1:+70848618 | Msa0221960:CDS |
| GTTCAGTGGATTTATTGGGT+TGG | 0.486574 | 2_1:+70849393 | Msa0221960:intron |
| CATATTGAGTAGTTGTCTAC+TGG | 0.487507 | 2_1:+70849584 | Msa0221960:three_prime_UTR |
| TTTCAATCCCATGTTCGTAA+TGG | 0.492704 | 2_1:+70849633 | Msa0221960:three_prime_UTR |
| GTTAATACCGGTTCCGGTAA+CGG | 0.493609 | 2_1:-70849043 | None:intergenic |
| ATCCTTGTTTACTGCACCGC+CGG | 0.493683 | 2_1:+70847817 | Msa0221960:CDS |
| TGAATTTACCTGGTCATCCC+AGG | 0.497378 | 2_1:-70849112 | None:intergenic |
| ACCATTTATTGGTGCTGCTG+TGG | 0.499187 | 2_1:+70849416 | Msa0221960:CDS |
| CGAGAAAGCCTGGGATGACC+AGG | 0.500829 | 2_1:+70849104 | Msa0221960:CDS |
| AAGGTGCTGGTGGTGGATCT+TGG | 0.504697 | 2_1:-70847591 | None:intergenic |
| TGGTCAAAACAGTGATGTAA+AGG | 0.506435 | 2_1:-70847690 | None:intergenic |
| GCTGGTCCGAAACTCCTGGC+AGG | 0.507858 | 2_1:-70849066 | None:intergenic |
| AGTTGTCTACTGGTCCCTCA+TGG | 0.512268 | 2_1:+70849594 | Msa0221960:three_prime_UTR |
| ATCCTCTAAGGATGTATTGG+TGG | 0.516154 | 2_1:-70849449 | None:intergenic |
| AACGGCTGGTCCGAAACTCC+TGG | 0.517472 | 2_1:-70849070 | None:intergenic |
| GTGACCTTTGGACTATTAGT+GGG | 0.523382 | 2_1:+70848595 | Msa0221960:CDS |
| ACCGGTTCCGGTAACGGGGA+TGG | 0.524302 | 2_1:-70849037 | None:intergenic |
| AGGTGCTGAATTTACAGCTA+AGG | 0.531268 | 2_1:+70847564 | Msa0221960:CDS |
| ATTTGATACTTACAGGAACA+TGG | 0.531612 | 2_1:-70848861 | None:intergenic |
| GGAGTTAACATGGTTTCTGA+TGG | 0.539576 | 2_1:+70848736 | Msa0221960:CDS |
| GTATTGGCACCACTTCCCAT+TGG | 0.539984 | 2_1:+70848985 | Msa0221960:CDS |
| AATCCAAATTCCAAACACAT+AGG | 0.540210 | 2_1:-70849657 | None:intergenic |
| ACATAGGGCCATTACGAACA+TGG | 0.540754 | 2_1:-70849641 | None:intergenic |
| TGTAGGAGGACACATTAATC+CGG | 0.545266 | 2_1:+70848570 | Msa0221960:intron |
| CTGATCCTAAGAGAAGTGCT+AGG | 0.547748 | 2_1:+70848833 | Msa0221960:CDS |
| TGTGGTGCTGGACTTGCAAA+GGG | 0.550221 | 2_1:+70848679 | Msa0221960:CDS |
| TCAAACAAAGGTGCTGGTGG+TGG | 0.551907 | 2_1:-70847598 | None:intergenic |
| ATAAAGAAGCCAAAATTACA+TGG | 0.553497 | 2_1:+70849682 | Msa0221960:three_prime_UTR |
| ATGAAAACAGCAAATCCAAT+GGG | 0.555341 | 2_1:-70849000 | None:intergenic |
| TCATTAAGCATTGCTCCTGA+AGG | 0.558367 | 2_1:-70849493 | None:intergenic |
| CAGTGTTTAGGAGCAATTTG+TGG | 0.561051 | 2_1:+70848661 | Msa0221960:CDS |
| ATCCAAATTCCAAACACATA+GGG | 0.562751 | 2_1:-70849656 | None:intergenic |
| CGGTAGCTTACCAGAGATAC+CGG | 0.562926 | 2_1:-70847836 | None:intergenic |
| GAACCGGTATTAACCCTGCC+AGG | 0.563096 | 2_1:+70849052 | Msa0221960:CDS |
| AAACATGGGCAAAGATGTTG+AGG | 0.571019 | 2_1:+70847531 | Msa0221960:exon |
| GTTTCTGATGGTTACAGCAA+AGG | 0.571603 | 2_1:+70848748 | Msa0221960:CDS |
| ACAGCAAATCCAATGGGAAG+TGG | 0.574194 | 2_1:-70848994 | None:intergenic |
| TACCGGCGGTGCAGTAAACA+AGG | 0.576199 | 2_1:-70847819 | None:intergenic |
| TTGTGGTGCTGGACTTGCAA+AGG | 0.580381 | 2_1:+70848678 | Msa0221960:CDS |
| TTTGATACTTACAGGAACAT+GGG | 0.583870 | 2_1:-70848860 | None:intergenic |
| TAAAGAAGCCAAAATTACAT+GGG | 0.586175 | 2_1:+70849683 | Msa0221960:three_prime_UTR |
| AATAGTCCAAAGGTCACAGC+CGG | 0.588618 | 2_1:-70848589 | None:intergenic |
| TGTTCTTCTTGTGTTTGAGG+TGG | 0.595161 | 2_1:-70847506 | None:intergenic |
| CTGGTCCGAAACTCCTGGCA+GGG | 0.595669 | 2_1:-70849065 | None:intergenic |
| TGTGTATCAAACAAAGGTGC+TGG | 0.595779 | 2_1:-70847604 | None:intergenic |
| TCGTTGTTGAAGATAACGGC+TGG | 0.597000 | 2_1:-70849084 | None:intergenic |
| CATGAAAACAGCAAATCCAA+TGG | 0.600094 | 2_1:-70849001 | None:intergenic |
| GATGTTGAGGTTCAAGAACA+AGG | 0.600555 | 2_1:+70847544 | Msa0221960:CDS |
| ACTCCTGGCAGGGTTAATAC+CGG | 0.603336 | 2_1:-70849055 | None:intergenic |
| TGGACTATTAGTGGGACGCA+AGG | 0.608088 | 2_1:+70848603 | Msa0221960:CDS |
| TAATACCGGTTCCGGTAACG+GGG | 0.609405 | 2_1:-70849041 | None:intergenic |
| AACATGGGATTGAAAACAAG+AGG | 0.610197 | 2_1:-70849625 | None:intergenic |
| TGATCCTAAGAGAAGTGCTA+GGG | 0.610364 | 2_1:+70848834 | Msa0221960:CDS |
| TCATACTACAACAGGTACAA+AGG | 0.611316 | 2_1:+70848712 | Msa0221960:CDS |
| CATAGGGCCATTACGAACAT+GGG | 0.613681 | 2_1:-70849640 | None:intergenic |
| AACTCATGTGTATCAAACAA+AGG | 0.617819 | 2_1:-70847610 | None:intergenic |
| CTTCAACAACGAGAAAGCCT+GGG | 0.625023 | 2_1:+70849095 | Msa0221960:CDS |
| AACACTGAATGTGATGGTGT+TGG | 0.639618 | 2_1:+70847754 | Msa0221960:CDS |
| GCGTCCCACTAATAGTCCAA+AGG | 0.647310 | 2_1:-70848599 | None:intergenic |
| CAAGAGGACATGACTCCATG+AGG | 0.657538 | 2_1:-70849609 | None:intergenic |
| GTACAAAGGAGGAGTTAACA+TGG | 0.665343 | 2_1:+70848726 | Msa0221960:CDS |
| AACAGTGTAGACCAAAACAA+AGG | 0.671173 | 2_1:-70848800 | None:intergenic |
| AAAGAAGCCAAAATTACATG+GGG | 0.678318 | 2_1:+70849684 | Msa0221960:three_prime_UTR |
| TACTACAACAGGTACAAAGG+AGG | 0.683670 | 2_1:+70848715 | Msa0221960:CDS |
| AAGAGGACATGACTCCATGA+GGG | 0.685063 | 2_1:-70849608 | None:intergenic |
| ATACACATGAGTTTACAAAG+TGG | 0.686005 | 2_1:+70847620 | Msa0221960:CDS |
| GATGGTAACACTGAATGTGA+TGG | 0.695483 | 2_1:+70847748 | Msa0221960:CDS |
| GTATCAAACAAAGGTGCTGG+TGG | 0.699276 | 2_1:-70847601 | None:intergenic |
| TAGCTTACCAGAGATACCGG+CGG | 0.818231 | 2_1:-70847833 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTGTAGTTATAAATA+CGG | - | chr2_1:70848252-70848271 | None:intergenic | 10.0% |
| !! | TGTAATTGAAATTAATTAAT+TGG | + | chr2_1:70848533-70848552 | Msa0221960:intron | 10.0% |
| !!! | TTTGAAATCATTAATTAAAT+AGG | + | chr2_1:70848963-70848982 | Msa0221960:intron | 10.0% |
| !!! | ATTTTTTGTTTAATAACATG+TGG | + | chr2_1:70848115-70848134 | Msa0221960:intron | 15.0% |
| !!! | CTAAATTGTACTTATTTTTT+TGG | - | chr2_1:70848281-70848300 | None:intergenic | 15.0% |
| !!! | TATCAAATTAATCACTTTTT+TGG | + | chr2_1:70848876-70848895 | Msa0221960:intron | 15.0% |
| !!! | ATCAAATTAATCACTTTTTT+GGG | + | chr2_1:70848877-70848896 | Msa0221960:intron | 15.0% |
| !! | ATCATTAATTAAATAGGTAT+TGG | + | chr2_1:70848969-70848988 | Msa0221960:intron | 15.0% |
| !!! | TTTAAATAGAAAATTTTGAG+TGG | - | chr2_1:70849271-70849290 | None:intergenic | 15.0% |
| !! | ACTAAGATAAAAAAGATAAA+AGG | - | chr2_1:70849765-70849784 | None:intergenic | 15.0% |
| !! | TTACAAGTTAGTTATTTAGT+CGG | + | chr2_1:70847879-70847898 | Msa0221960:intron | 20.0% |
| !! | TGTATCATATACACTTTATA+AGG | + | chr2_1:70847906-70847925 | Msa0221960:intron | 20.0% |
| !! | TGAATATTGTTAGAATTAGT+TGG | - | chr2_1:70847958-70847977 | None:intergenic | 20.0% |
| !!! | AACGATTTACCTTAATTTTT+TGG | + | chr2_1:70847995-70848014 | Msa0221960:intron | 20.0% |
| !! | CCAAATTAACCAAAAAATTA+AGG | - | chr2_1:70848007-70848026 | None:intergenic | 20.0% |
| !!! | CCTTAATTTTTTGGTTAATT+TGG | + | chr2_1:70848004-70848023 | Msa0221960:intron | 20.0% |
| !!! | CAGTTAATTTTCTTTTTAAG+TGG | - | chr2_1:70848400-70848419 | None:intergenic | 20.0% |
| !!! | TAGGTATATTTTTTCTTTTG+AGG | + | chr2_1:70848493-70848512 | Msa0221960:intron | 20.0% |
| !!! | AGGTATATTTTTTCTTTTGA+GGG | + | chr2_1:70848494-70848513 | Msa0221960:intron | 20.0% |
| !! | TGGTAATATTTCATAATTGT+AGG | + | chr2_1:70848553-70848572 | Msa0221960:intron | 20.0% |
| !! | TAATATTTCATAATTGTAGG+AGG | + | chr2_1:70848556-70848575 | Msa0221960:intron | 20.0% |
| !! | AATTATTATCTATGAGTTGT+TGG | + | chr2_1:70849534-70849553 | Msa0221960:three_prime_UTR | 20.0% |
| !! | ATGATACTGTTATTCTTAAA+AGG | - | chr2_1:70849567-70849586 | None:intergenic | 20.0% |
| !! | GATAAAAAAGATAAAAGGAA+GGG | - | chr2_1:70849760-70849779 | None:intergenic | 20.0% |
| !! | AGATAAAAAAGATAAAAGGA+AGG | - | chr2_1:70849761-70849780 | None:intergenic | 20.0% |
| ! | GAGTAGAAATATGGTATTTA+AGG | - | chr2_1:70847435-70847454 | None:intergenic | 25.0% |
| ! | TTGATGAATGAGTAGAAATA+TGG | - | chr2_1:70847444-70847463 | None:intergenic | 25.0% |
| !!! | AGTGTACTATTATTTTTGTG+TGG | - | chr2_1:70847468-70847487 | None:intergenic | 25.0% |
| ! | ACAAGAAGAACAAAAAACAT+GGG | + | chr2_1:70847517-70847536 | Msa0221960:exon | 25.0% |
| ! | TTGTCTACTATAACCAATAA+TGG | - | chr2_1:70847713-70847732 | None:intergenic | 25.0% |
| ! | AAAAAAAATGTGCAATTGCA+AGG | + | chr2_1:70848420-70848439 | Msa0221960:intron | 25.0% |
| ! | AAGGTTACATAAGTCAAAAT+TGG | + | chr2_1:70848439-70848458 | Msa0221960:intron | 25.0% |
| !!! | GGTATATTTTTTCTTTTGAG+GGG | + | chr2_1:70848495-70848514 | Msa0221960:intron | 25.0% |
| !!! | AATTATTGGTACCTTTGTTT+TGG | + | chr2_1:70848789-70848808 | Msa0221960:CDS | 25.0% |
| !! | GTGATTAATTTGATACTTAC+AGG | - | chr2_1:70848871-70848890 | None:intergenic | 25.0% |
| !!! | AAATAGAAAATTTTGAGTGG+TGG | - | chr2_1:70849268-70849287 | None:intergenic | 25.0% |
| !!! | TTTTTGTTCAGTGGATTTAT+TGG | + | chr2_1:70849388-70849407 | Msa0221960:intron | 25.0% |
| !!! | TTTTGTTCAGTGGATTTATT+GGG | + | chr2_1:70849389-70849408 | Msa0221960:intron | 25.0% |
| ! | GCTTAATGAATGAATATGTT+TGG | + | chr2_1:70849507-70849526 | Msa0221960:exon | 25.0% |
| ! | ATAAAGAAGCCAAAATTACA+TGG | + | chr2_1:70849682-70849701 | Msa0221960:three_prime_UTR | 25.0% |
| ! | TAAAGAAGCCAAAATTACAT+GGG | + | chr2_1:70849683-70849702 | Msa0221960:three_prime_UTR | 25.0% |
| !! | ATAAGCATGCTTATGTTTTA+AGG | + | chr2_1:70849722-70849741 | Msa0221960:three_prime_UTR | 25.0% |
| !!! | TAAGCATGCTTATGTTTTAA+GGG | + | chr2_1:70849723-70849742 | Msa0221960:three_prime_UTR | 25.0% |
| ! | TTTTGTTCTTCTTGTGTTTG+AGG | - | chr2_1:70847512-70847531 | None:intergenic | 30.0% |
| CACAAGAAGAACAAAAAACA+TGG | + | chr2_1:70847516-70847535 | Msa0221960:exon | 30.0% | |
| AACTCATGTGTATCAAACAA+AGG | - | chr2_1:70847613-70847632 | None:intergenic | 30.0% | |
| ATACACATGAGTTTACAAAG+TGG | + | chr2_1:70847620-70847639 | Msa0221960:CDS | 30.0% | |
| !!! | ATCACTGTTTTGACCATTAT+TGG | + | chr2_1:70847697-70847716 | Msa0221960:CDS | 30.0% |
| CAAAGTGATACTACTATTGA+TGG | + | chr2_1:70847730-70847749 | Msa0221960:CDS | 30.0% | |
| CTACCTTAAACAAGATAGAA+CGG | - | chr2_1:70847859-70847878 | None:intergenic | 30.0% | |
| ! | GAATATCGTTTAGCTTAGTT+AGG | - | chr2_1:70847936-70847955 | None:intergenic | 30.0% |
| !!! | TTTTAAGTTTCCCTTTTCGA+TGG | + | chr2_1:70848140-70848159 | Msa0221960:intron | 30.0% |
| TTTGATACTTACAGGAACAT+GGG | - | chr2_1:70848863-70848882 | None:intergenic | 30.0% | |
| ATTTGATACTTACAGGAACA+TGG | - | chr2_1:70848864-70848883 | None:intergenic | 30.0% | |
| ATGAAAACAGCAAATCCAAT+GGG | - | chr2_1:70849003-70849022 | None:intergenic | 30.0% | |
| TTTCTCGTTGTTGAAGATAA+CGG | - | chr2_1:70849091-70849110 | None:intergenic | 30.0% | |
| CTCGATATTGTAGAGAATTA+CGG | + | chr2_1:70849150-70849169 | Msa0221960:intron | 30.0% | |
| GGTGGTATTTAGTATATATG+TGG | - | chr2_1:70849250-70849269 | None:intergenic | 30.0% | |
| !!! | TGTTTGTTGTTTTTGTTCAG+TGG | + | chr2_1:70849379-70849398 | Msa0221960:intron | 30.0% |
| ATCCAAATTCCAAACACATA+GGG | - | chr2_1:70849659-70849678 | None:intergenic | 30.0% | |
| AATCCAAATTCCAAACACAT+AGG | - | chr2_1:70849660-70849679 | None:intergenic | 30.0% | |
| ! | TATGTGTTTGGAATTTGGAT+TGG | + | chr2_1:70849659-70849678 | Msa0221960:three_prime_UTR | 30.0% |
| AAAGAAGCCAAAATTACATG+GGG | + | chr2_1:70849684-70849703 | Msa0221960:three_prime_UTR | 30.0% | |
| ! | CATGCTTATCTACAATTTTG+AGG | - | chr2_1:70849711-70849730 | None:intergenic | 30.0% |
| TGGTCAAAACAGTGATGTAA+AGG | - | chr2_1:70847693-70847712 | None:intergenic | 35.0% | |
| ! | CTACCGTTCTATCTTGTTTA+AGG | + | chr2_1:70847853-70847872 | Msa0221960:intron | 35.0% |
| AAACACATAGCCATCGAAAA+GGG | - | chr2_1:70848153-70848172 | None:intergenic | 35.0% | |
| AAAACACATAGCCATCGAAA+AGG | - | chr2_1:70848154-70848173 | None:intergenic | 35.0% | |
| GTTGAAACAGATTACACTGA+CGG | - | chr2_1:70848337-70848356 | None:intergenic | 35.0% | |
| AAACTTGTGTTGTCTTGTGT+AGG | + | chr2_1:70848474-70848493 | Msa0221960:intron | 35.0% | |
| ! | ACGCAAGGTGTCTTTAATAA+GGG | + | chr2_1:70848618-70848637 | Msa0221960:CDS | 35.0% |
| AACACTGTGCAACTATGTAT+AGG | - | chr2_1:70848648-70848667 | None:intergenic | 35.0% | |
| TACATAGTTGCACAGTGTTT+AGG | + | chr2_1:70848649-70848668 | Msa0221960:CDS | 35.0% | |
| TCCAAACATCATACTACAAC+AGG | + | chr2_1:70848704-70848723 | Msa0221960:CDS | 35.0% | |
| ACCTGTTGTAGTATGATGTT+TGG | - | chr2_1:70848708-70848727 | None:intergenic | 35.0% | |
| TCATACTACAACAGGTACAA+AGG | + | chr2_1:70848712-70848731 | Msa0221960:CDS | 35.0% | |
| !! | GCTTTAGGTGCTGAAATTAT+TGG | + | chr2_1:70848775-70848794 | Msa0221960:CDS | 35.0% |
| AACAGTGTAGACCAAAACAA+AGG | - | chr2_1:70848803-70848822 | None:intergenic | 35.0% | |
| CATGAAAACAGCAAATCCAA+TGG | - | chr2_1:70849004-70849023 | None:intergenic | 35.0% | |
| !!! | CATTGGATTTGCTGTTTTCA+TGG | + | chr2_1:70849002-70849021 | Msa0221960:CDS | 35.0% |
| !! | TATTGGGTTGGACCATTTAT+TGG | + | chr2_1:70849405-70849424 | Msa0221960:CDS | 35.0% |
| CTTTAATTGCTGATCCTCTA+AGG | - | chr2_1:70849464-70849483 | None:intergenic | 35.0% | |
| TATCTATGAGTTGTTGGTGT+TGG | + | chr2_1:70849540-70849559 | Msa0221960:three_prime_UTR | 35.0% | |
| CATATTGAGTAGTTGTCTAC+TGG | + | chr2_1:70849584-70849603 | Msa0221960:three_prime_UTR | 35.0% | |
| AACATGGGATTGAAAACAAG+AGG | - | chr2_1:70849628-70849647 | None:intergenic | 35.0% | |
| TTTCAATCCCATGTTCGTAA+TGG | + | chr2_1:70849633-70849652 | Msa0221960:three_prime_UTR | 35.0% | |
| TGTTCTTCTTGTGTTTGAGG+TGG | - | chr2_1:70847509-70847528 | None:intergenic | 40.0% | |
| AAACATGGGCAAAGATGTTG+AGG | + | chr2_1:70847531-70847550 | Msa0221960:exon | 40.0% | |
| GATGTTGAGGTTCAAGAACA+AGG | + | chr2_1:70847544-70847563 | Msa0221960:CDS | 40.0% | |
| !! | AGGTGCTGAATTTACAGCTA+AGG | + | chr2_1:70847564-70847583 | Msa0221960:CDS | 40.0% |
| ! | TGTGTATCAAACAAAGGTGC+TGG | - | chr2_1:70847607-70847626 | None:intergenic | 40.0% |
| GATGGTAACACTGAATGTGA+TGG | + | chr2_1:70847748-70847767 | Msa0221960:CDS | 40.0% | |
| ! | AACACTGAATGTGATGGTGT+TGG | + | chr2_1:70847754-70847773 | Msa0221960:CDS | 40.0% |
| !!! | ATGTGATGGTGTTGGTGTTT+TGG | + | chr2_1:70847762-70847781 | Msa0221960:CDS | 40.0% |
| !!! | TGTGATGGTGTTGGTGTTTT+GGG | + | chr2_1:70847763-70847782 | Msa0221960:CDS | 40.0% |
| !!! | TTGGTGTTTTGGGAATTGCT+TGG | + | chr2_1:70847773-70847792 | Msa0221960:CDS | 40.0% |
| !!! | TGGTGTTTTGGGAATTGCTT+GGG | + | chr2_1:70847774-70847793 | Msa0221960:CDS | 40.0% |
| AAGAGCAAACACACAATCTC+TGG | - | chr2_1:70848359-70848378 | None:intergenic | 40.0% | |
| TGTAGGAGGACACATTAATC+CGG | + | chr2_1:70848570-70848589 | Msa0221960:intron | 40.0% | |
| TGTGACCTTTGGACTATTAG+TGG | + | chr2_1:70848594-70848613 | Msa0221960:CDS | 40.0% | |
| GTGACCTTTGGACTATTAGT+GGG | + | chr2_1:70848595-70848614 | Msa0221960:CDS | 40.0% | |
| ! | GACGCAAGGTGTCTTTAATA+AGG | + | chr2_1:70848617-70848636 | Msa0221960:CDS | 40.0% |
| CAGTGTTTAGGAGCAATTTG+TGG | + | chr2_1:70848661-70848680 | Msa0221960:CDS | 40.0% | |
| TACTACAACAGGTACAAAGG+AGG | + | chr2_1:70848715-70848734 | Msa0221960:CDS | 40.0% | |
| GTACAAAGGAGGAGTTAACA+TGG | + | chr2_1:70848726-70848745 | Msa0221960:CDS | 40.0% | |
| GGAGTTAACATGGTTTCTGA+TGG | + | chr2_1:70848736-70848755 | Msa0221960:CDS | 40.0% | |
| GTTTCTGATGGTTACAGCAA+AGG | + | chr2_1:70848748-70848767 | Msa0221960:CDS | 40.0% | |
| !! | TGATCCTAAGAGAAGTGCTA+GGG | + | chr2_1:70848834-70848853 | Msa0221960:CDS | 40.0% |
| !!! | TGCTGTTTTCATGGTTCACT+TGG | + | chr2_1:70849011-70849030 | Msa0221960:CDS | 40.0% |
| ! | GTTCAGTGGATTTATTGGGT+TGG | + | chr2_1:70849393-70849412 | Msa0221960:intron | 40.0% |
| TACCACCAATACATCCTTAG+AGG | + | chr2_1:70849447-70849466 | Msa0221960:CDS | 40.0% | |
| ! | ATCCTCTAAGGATGTATTGG+TGG | - | chr2_1:70849452-70849471 | None:intergenic | 40.0% |
| ! | CTGATCCTCTAAGGATGTAT+TGG | - | chr2_1:70849455-70849474 | None:intergenic | 40.0% |
| GGATCAGCAATTAAAGCTCT+TGG | + | chr2_1:70849468-70849487 | Msa0221960:CDS | 40.0% | |
| TTAAAGCTCTTGGATCCTTC+AGG | + | chr2_1:70849478-70849497 | Msa0221960:CDS | 40.0% | |
| ! | TCATTAAGCATTGCTCCTGA+AGG | - | chr2_1:70849496-70849515 | None:intergenic | 40.0% |
| ! | TTGAGGACCCCATGTAATTT+TGG | - | chr2_1:70849694-70849713 | None:intergenic | 40.0% |
| ! | CTTCTTGTGTTTGAGGTGGT+GGG | - | chr2_1:70847505-70847524 | None:intergenic | 45.0% |
| ! | TCTTCTTGTGTTTGAGGTGG+TGG | - | chr2_1:70847506-70847525 | None:intergenic | 45.0% |
| !! | GTATCAAACAAAGGTGCTGG+TGG | - | chr2_1:70847604-70847623 | None:intergenic | 45.0% |
| ! | TTGGGAATTGCTTGGGCTTT+TGG | + | chr2_1:70847781-70847800 | Msa0221960:CDS | 45.0% |
| ATTAATCCGGCTGTGACCTT+TGG | + | chr2_1:70848583-70848602 | Msa0221960:CDS | 45.0% | |
| AATAGTCCAAAGGTCACAGC+CGG | - | chr2_1:70848592-70848611 | None:intergenic | 45.0% | |
| TTAGGAGCAATTTGTGGTGC+TGG | + | chr2_1:70848667-70848686 | Msa0221960:CDS | 45.0% | |
| !! | TACAGCAAAGGCACTGCTTT+AGG | + | chr2_1:70848760-70848779 | Msa0221960:CDS | 45.0% |
| !! | CTGATCCTAAGAGAAGTGCT+AGG | + | chr2_1:70848833-70848852 | Msa0221960:CDS | 45.0% |
| GAATCCCTAGCACTTCTCTT+AGG | - | chr2_1:70848841-70848860 | None:intergenic | 45.0% | |
| ACAGCAAATCCAATGGGAAG+TGG | - | chr2_1:70848997-70849016 | None:intergenic | 45.0% | |
| !! | TTAATACCGGTTCCGGTAAC+GGG | - | chr2_1:70849045-70849064 | None:intergenic | 45.0% |
| !! | GTTAATACCGGTTCCGGTAA+CGG | - | chr2_1:70849046-70849065 | None:intergenic | 45.0% |
| ATTAACCCTGCCAGGAGTTT+CGG | + | chr2_1:70849060-70849079 | Msa0221960:CDS | 45.0% | |
| ! | TCGTTGTTGAAGATAACGGC+TGG | - | chr2_1:70849087-70849106 | None:intergenic | 45.0% |
| TCTTCAACAACGAGAAAGCC+TGG | + | chr2_1:70849094-70849113 | Msa0221960:CDS | 45.0% | |
| CTTCAACAACGAGAAAGCCT+GGG | + | chr2_1:70849095-70849114 | Msa0221960:CDS | 45.0% | |
| TGAATTTACCTGGTCATCCC+AGG | - | chr2_1:70849115-70849134 | None:intergenic | 45.0% | |
| ACAATATCGAGTAGTGTGCC+TGG | - | chr2_1:70849141-70849160 | None:intergenic | 45.0% | |
| ! | CAGTTGATGCGATCACATTG+TGG | + | chr2_1:70849180-70849199 | Msa0221960:intron | 45.0% |
| !! | ACCATTTATTGGTGCTGCTG+TGG | + | chr2_1:70849416-70849435 | Msa0221960:CDS | 45.0% |
| AAGAGGACATGACTCCATGA+GGG | - | chr2_1:70849611-70849630 | None:intergenic | 45.0% | |
| CATAGGGCCATTACGAACAT+GGG | - | chr2_1:70849643-70849662 | None:intergenic | 45.0% | |
| ACATAGGGCCATTACGAACA+TGG | - | chr2_1:70849644-70849663 | None:intergenic | 45.0% | |
| TCGTAATGGCCCTATGTGTT+TGG | + | chr2_1:70849647-70849666 | Msa0221960:three_prime_UTR | 45.0% | |
| ! | GGCCCTATGTGTTTGGAATT+TGG | + | chr2_1:70849654-70849673 | Msa0221960:three_prime_UTR | 45.0% |
| !!! | AATTTAAAAATTAATTTGAT+TGG | + | chr2_1:70847398-70847417 | Msa0221960:five_prime_UTR | 5.0% |
| !! | TCAAACAAAGGTGCTGGTGG+TGG | - | chr2_1:70847601-70847620 | None:intergenic | 50.0% |
| ! | GGAATTGCTTGGGCTTTTGG+TGG | + | chr2_1:70847784-70847803 | Msa0221960:CDS | 50.0% |
| ! | ATCCTTGTTTACTGCACCGC+CGG | + | chr2_1:70847817-70847836 | Msa0221960:CDS | 50.0% |
| TAGCTTACCAGAGATACCGG+CGG | - | chr2_1:70847836-70847855 | None:intergenic | 50.0% | |
| CGGTAGCTTACCAGAGATAC+CGG | - | chr2_1:70847839-70847858 | None:intergenic | 50.0% | |
| GCGTCCCACTAATAGTCCAA+AGG | - | chr2_1:70848602-70848621 | None:intergenic | 50.0% | |
| TGGACTATTAGTGGGACGCA+AGG | + | chr2_1:70848603-70848622 | Msa0221960:CDS | 50.0% | |
| ! | TTGTGGTGCTGGACTTGCAA+AGG | + | chr2_1:70848678-70848697 | Msa0221960:CDS | 50.0% |
| ! | TGTGGTGCTGGACTTGCAAA+GGG | + | chr2_1:70848679-70848698 | Msa0221960:CDS | 50.0% |
| ! | GTATTGGCACCACTTCCCAT+TGG | + | chr2_1:70848985-70849004 | Msa0221960:CDS | 50.0% |
| !! | TAATACCGGTTCCGGTAACG+GGG | - | chr2_1:70849044-70849063 | None:intergenic | 50.0% |
| ACTCCTGGCAGGGTTAATAC+CGG | - | chr2_1:70849058-70849077 | None:intergenic | 50.0% | |
| GACCAGGTAAATTCAGTGCC+AGG | + | chr2_1:70849120-70849139 | Msa0221960:intron | 50.0% | |
| ! | TGCCTGGCACTGAATTTACC+TGG | - | chr2_1:70849125-70849144 | None:intergenic | 50.0% |
| GCCACAGCAGCACCAATAAA+TGG | - | chr2_1:70849420-70849439 | None:intergenic | 50.0% | |
| AGTTGTCTACTGGTCCCTCA+TGG | + | chr2_1:70849594-70849613 | Msa0221960:three_prime_UTR | 50.0% | |
| CAAGAGGACATGACTCCATG+AGG | - | chr2_1:70849612-70849631 | None:intergenic | 50.0% | |
| !! | AAGGTGCTGGTGGTGGATCT+TGG | - | chr2_1:70847594-70847613 | None:intergenic | 55.0% |
| TACCGGCGGTGCAGTAAACA+AGG | - | chr2_1:70847822-70847841 | None:intergenic | 55.0% | |
| TTGGCTACCATCCCCGTTAC+CGG | + | chr2_1:70849030-70849049 | Msa0221960:CDS | 55.0% | |
| !! | GGCAGGGTTAATACCGGTTC+CGG | - | chr2_1:70849052-70849071 | None:intergenic | 55.0% |
| GAACCGGTATTAACCCTGCC+AGG | + | chr2_1:70849052-70849071 | Msa0221960:CDS | 55.0% | |
| TACTGCACCGCCGGTATCTC+TGG | + | chr2_1:70847826-70847845 | Msa0221960:CDS | 60.0% | |
| ACCATCCCCGTTACCGGAAC+CGG | + | chr2_1:70849036-70849055 | Msa0221960:CDS | 60.0% | |
| CTGGTCCGAAACTCCTGGCA+GGG | - | chr2_1:70849068-70849087 | None:intergenic | 60.0% | |
| ! | AACGGCTGGTCCGAAACTCC+TGG | - | chr2_1:70849073-70849092 | None:intergenic | 60.0% |
| CGAGAAAGCCTGGGATGACC+AGG | + | chr2_1:70849104-70849123 | Msa0221960:CDS | 60.0% | |
| !! | ACCGGTTCCGGTAACGGGGA+TGG | - | chr2_1:70849040-70849059 | None:intergenic | 65.0% |
| GCTGGTCCGAAACTCCTGGC+AGG | - | chr2_1:70849069-70849088 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 70847320 | 70849883 | 70847320 | ID=Msa0221960;Name=Msa0221960 |
| chr2_1 | mRNA | 70847320 | 70849883 | 70847320 | ID=Msa0221960-mRNA-1;Parent=Msa0221960;Name=Msa0221960-mRNA-1;_AED=0.16;_eAED=0.16;_QI=215|1|1|1|1|1|4|371|287 |
| chr2_1 | exon | 70847320 | 70847847 | 70847320 | ID=Msa0221960-mRNA-1:exon:20343;Parent=Msa0221960-mRNA-1 |
| chr2_1 | exon | 70848575 | 70848870 | 70848575 | ID=Msa0221960-mRNA-1:exon:20344;Parent=Msa0221960-mRNA-1 |
| chr2_1 | exon | 70848985 | 70849125 | 70848985 | ID=Msa0221960-mRNA-1:exon:20345;Parent=Msa0221960-mRNA-1 |
| chr2_1 | exon | 70849399 | 70849883 | 70849399 | ID=Msa0221960-mRNA-1:exon:20346;Parent=Msa0221960-mRNA-1 |
| chr2_1 | five_prime_UTR | 70847320 | 70847534 | 70847320 | ID=Msa0221960-mRNA-1:five_prime_utr;Parent=Msa0221960-mRNA-1 |
| chr2_1 | CDS | 70847535 | 70847847 | 70847535 | ID=Msa0221960-mRNA-1:cds;Parent=Msa0221960-mRNA-1 |
| chr2_1 | CDS | 70848575 | 70848870 | 70848575 | ID=Msa0221960-mRNA-1:cds;Parent=Msa0221960-mRNA-1 |
| chr2_1 | CDS | 70848985 | 70849125 | 70848985 | ID=Msa0221960-mRNA-1:cds;Parent=Msa0221960-mRNA-1 |
| chr2_1 | CDS | 70849399 | 70849512 | 70849399 | ID=Msa0221960-mRNA-1:cds;Parent=Msa0221960-mRNA-1 |
| chr2_1 | three_prime_UTR | 70849513 | 70849883 | 70849513 | ID=Msa0221960-mRNA-1:three_prime_utr;Parent=Msa0221960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
