AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0335060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335060 MtrunA17_Chr2g0319951 100.000 218 0 0 1 218 1 218 1.90e-162 447
Msa0335060 MtrunA17_Chr2g0315551 83.871 217 34 1 1 217 1 216 1.73e-135 379
Msa0335060 MtrunA17_Chr4g0046261 76.712 219 46 3 1 217 1 216 7.65e-122 344
Msa0335060 MtrunA17_Chr2g0283131 76.256 219 47 3 1 217 1 216 2.17e-121 343
Msa0335060 MtrunA17_Chr4g0040781 73.973 219 52 3 1 217 1 216 3.47e-120 340
Msa0335060 MtrunA17_Chr2g0325091 73.585 212 52 3 7 217 5 213 1.67e-112 320
Msa0335060 MtrunA17_Chr3g0112681 68.981 216 66 1 3 218 2 216 9.98e-111 316
Msa0335060 MtrunA17_Chr4g0032201 70.093 214 62 2 4 217 3 214 6.14e-110 314
Msa0335060 MtrunA17_Chr2g0276941 66.038 212 72 0 7 218 9 220 3.57e-102 295
Msa0335060 MtrunA17_Chr1g0174281 60.748 214 80 1 7 216 9 222 1.91e-95 278
Msa0335060 MtrunA17_Chr8g0381841 60.280 214 82 2 6 216 10 223 5.37e-92 269
Msa0335060 MtrunA17_Chr3g0123821 59.174 218 86 3 2 216 4 221 2.32e-91 267
Msa0335060 MtrunA17_Chr7g0231131 61.353 207 79 1 11 216 13 219 5.44e-91 266
Msa0335060 MtrunA17_Chr6g0482721 55.924 211 92 1 7 217 6 215 5.07e-84 248
Msa0335060 MtrunA17_Chr8g0346421 55.000 220 88 3 4 217 17 231 1.85e-83 248
Msa0335060 MtrunA17_Chr7g0214241 58.454 207 85 1 12 217 14 220 2.34e-83 247
Msa0335060 MtrunA17_Chr8g0351861 53.744 227 95 3 1 217 1 227 5.64e-82 243
Msa0335060 MtrunA17_Chr1g0189361 55.189 212 90 2 11 217 12 223 9.55e-81 240
Msa0335060 MtrunA17_Chr7g0275991 58.696 184 76 0 5 188 12 195 1.71e-78 234
Msa0335060 MtrunA17_Chr8g0392931 54.502 211 96 0 7 217 8 218 5.76e-77 230
Msa0335060 MtrunA17_Chr7g0234201 55.556 207 88 2 12 217 12 215 4.44e-76 228
Msa0335060 MtrunA17_Chr2g0290891 48.387 217 95 3 10 217 3 211 1.28e-64 199
Msa0335060 MtrunA17_Chr6g0458081 55.689 167 74 0 10 176 3 169 3.90e-64 197
Msa0335060 MtrunA17_Chr4g0055651 46.411 209 101 2 9 217 4 201 4.30e-59 184
Msa0335060 MtrunA17_Chr8g0349711 44.651 215 103 4 12 217 5 212 5.64e-58 182
Msa0335060 MtrunA17_Chr8g0335471 46.479 213 98 3 9 218 4 203 2.63e-57 180
Msa0335060 MtrunA17_Chr7g0250531 46.479 213 97 3 9 218 4 202 7.81e-57 179
Msa0335060 MtrunA17_Chr8g0349681 46.667 210 104 3 10 217 381 584 2.12e-55 185
Msa0335060 MtrunA17_Chr8g0349681 47.904 167 87 0 10 176 172 338 1.06e-49 170
Msa0335060 MtrunA17_Chr8g0349681 51.282 156 76 0 12 167 12 167 5.44e-49 168
Msa0335060 MtrunA17_Chr1g0182321 49.123 171 86 1 5 174 7 177 1.01e-53 171
Msa0335060 MtrunA17_Chr4g0030911 42.991 214 105 5 9 216 11 213 2.13e-53 170
Msa0335060 MtrunA17_Chr1g0212521 42.584 209 114 3 9 216 11 214 2.42e-53 170
Msa0335060 MtrunA17_Chr1g0182301 48.538 171 87 1 5 174 7 177 3.20e-53 170
Msa0335060 MtrunA17_Chr7g0263071 49.102 167 84 1 9 174 11 177 1.98e-52 168
Msa0335060 MtrunA17_Chr2g0276931 44.330 194 106 1 8 201 4 195 4.99e-52 166
Msa0335060 MtrunA17_Chr1g0199331 46.012 163 87 1 15 176 33 195 5.67e-50 161
Msa0335060 MtrunA17_Chr3g0109721 45.679 162 88 0 15 176 12 173 1.23e-48 158
Msa0335060 MtrunA17_Chr2g0327911 45.087 173 93 2 4 174 6 178 1.25e-48 158
Msa0335060 MtrunA17_Chr8g0384311 47.619 168 85 3 9 174 9 175 2.90e-48 157
Msa0335060 MtrunA17_Chr5g0433561 44.444 162 90 0 15 176 12 173 6.88e-47 153
Msa0335060 MtrunA17_Chr1g0159481 48.214 168 84 3 9 174 13 179 2.11e-46 152
Msa0335060 MtrunA17_Chr7g0265001 44.286 210 107 4 10 217 13 214 4.10e-46 152
Msa0335060 MtrunA17_Chr3g0130271 48.824 170 81 5 9 174 8 175 1.62e-45 150
Msa0335060 MtrunA17_Chr8g0390561 40.625 160 95 0 15 174 11 170 1.23e-43 145
Msa0335060 MtrunA17_Chr1g0197331 40.090 222 106 5 6 217 8 212 8.64e-43 143
Msa0335060 MtrunA17_Chr1g0180291 43.062 209 108 6 10 216 11 210 1.02e-42 143
Msa0335060 MtrunA17_Chr5g0400131 36.943 157 99 0 14 170 10 166 7.29e-40 135
Msa0335060 MtrunA17_Chr4g0055081 36.306 157 100 0 14 170 10 166 4.29e-39 134
Msa0335060 MtrunA17_Chr3g0123971 34.783 161 105 0 14 174 10 170 1.47e-38 132
Msa0335060 MtrunA17_Chr8g0382221 34.783 161 105 0 14 174 10 170 1.85e-38 132
Msa0335060 MtrunA17_Chr8g0383261 40.123 162 90 3 13 167 12 173 2.93e-34 121
Msa0335060 MtrunA17_Chr4g0034871 35.714 182 102 4 13 187 8 181 5.92e-34 120
Msa0335060 MtrunA17_Chr6g0466301 36.970 165 97 2 13 170 8 172 9.39e-34 120
Msa0335060 MtrunA17_Chr6g0465491 36.970 165 97 2 13 170 8 172 9.39e-34 120
Msa0335060 MtrunA17_Chr2g0331691 38.889 162 92 3 13 167 10 171 3.06e-33 119
Msa0335060 MtrunA17_Chr1g0201121 37.037 162 95 2 13 167 8 169 6.43e-33 117
Msa0335060 MtrunA17_Chr4g0004661 38.272 162 93 3 13 167 64 225 8.06e-32 116
Msa0335060 MtrunA17_Chr3g0138121 33.117 154 100 2 14 167 14 164 4.94e-24 95.1
Msa0335060 MtrunA17_Chr3g0138111 33.117 154 100 2 14 167 14 164 6.04e-24 95.1
Msa0335060 MtrunA17_Chr3g0138101 33.117 154 100 2 14 167 14 164 6.23e-24 95.1
Msa0335060 MtrunA17_Chr3g0117931 30.387 181 112 5 13 181 8 186 4.84e-22 89.7
Msa0335060 MtrunA17_Chr6g0466161 36.054 147 87 3 28 167 5 151 4.89e-22 89.7
Msa0335060 MtrunA17_Chr6g0465471 36.054 147 87 3 28 167 5 151 5.37e-22 89.7
Msa0335060 MtrunA17_Chr4g0037021 31.492 181 110 5 13 181 6 184 6.72e-22 89.0
Msa0335060 MtrunA17_Chr2g0325101 32.934 167 98 5 13 167 6 170 1.22e-21 88.2
Msa0335060 MtrunA17_Chr4g0046211 37.500 120 72 3 13 131 6 123 1.80e-21 86.7
Msa0335060 MtrunA17_Chr5g0405791 31.138 167 101 5 13 167 6 170 2.18e-20 85.1
Msa0335060 MtrunA17_Chr6g0486041 36.364 121 74 3 13 132 6 124 5.28e-20 84.3
Msa0335060 MtrunA17_Chr8g0371501 31.138 167 101 5 13 167 6 170 6.47e-20 84.0
Msa0335060 MtrunA17_Chr6g0466431 34.343 99 56 1 13 111 8 97 2.39e-16 71.6
Msa0335060 MtrunA17_Chr6g0465611 34.343 99 56 1 13 111 8 97 2.39e-16 71.6
Msa0335060 MtrunA17_Chr1g0178291 33.333 165 100 5 10 174 428 582 2.71e-15 73.9
Msa0335060 MtrunA17_Chr5g0443631 27.717 184 118 6 3 177 95 272 2.69e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335060 AT1G06400.1 83.486 218 34 1 1 218 1 216 2.16e-136 381
Msa0335060 AT1G16920.1 82.569 218 36 2 1 218 1 216 3.61e-133 373
Msa0335060 AT4G18800.1 82.569 218 34 2 1 218 1 214 1.50e-131 369
Msa0335060 AT5G45750.1 81.651 218 38 1 1 218 1 216 3.95e-131 368
Msa0335060 AT5G60860.1 77.273 220 45 3 1 218 1 217 7.37e-125 352
Msa0335060 AT3G15060.1 75.455 220 49 3 1 218 1 217 8.39e-122 344
Msa0335060 AT4G18430.1 73.059 219 54 3 1 217 1 216 3.33e-119 338
Msa0335060 AT1G28550.1 72.146 219 57 3 1 217 1 217 4.94e-117 332
Msa0335060 AT2G33870.1 71.233 219 59 3 1 217 1 217 1.07e-114 327
Msa0335060 AT1G07410.1 70.423 213 60 2 5 217 4 213 2.45e-109 313
Msa0335060 AT1G09630.1 68.224 214 67 1 5 218 4 216 1.80e-107 308
Msa0335060 AT3G46830.1 68.056 216 67 2 4 218 3 217 6.43e-104 299
Msa0335060 AT3G46830.2 68.056 216 67 2 4 218 3 217 6.43e-104 299
Msa0335060 AT5G59150.1 66.977 215 69 2 4 217 3 216 5.20e-103 297
Msa0335060 AT5G47960.1 64.319 213 72 2 7 216 9 220 6.55e-96 279
Msa0335060 AT3G12160.1 63.158 209 72 2 11 216 13 219 1.24e-94 276
Msa0335060 AT4G39990.1 59.447 217 71 3 11 218 15 223 3.55e-90 265
Msa0335060 AT5G65270.1 58.447 219 73 3 11 218 15 226 1.50e-88 260
Msa0335060 AT2G43130.1 57.746 213 85 2 7 217 4 213 9.28e-84 248
Msa0335060 AT5G47520.1 55.022 229 84 3 1 218 1 221 9.51e-84 248
Msa0335060 AT1G05810.1 55.963 218 88 3 6 218 3 217 1.67e-81 242
Msa0335060 AT1G05810.2 55.963 218 88 3 6 218 49 263 4.72e-81 243
Msa0335060 AT2G31680.1 55.046 218 91 4 6 218 3 218 3.52e-80 239
Msa0335060 AT1G18200.1 56.604 212 85 2 1 205 1 212 7.41e-79 236
Msa0335060 AT1G73640.1 52.838 229 97 2 1 218 1 229 5.23e-78 234
Msa0335060 AT3G07410.1 54.419 215 98 0 3 217 2 216 5.65e-78 233
Msa0335060 AT1G01200.1 54.717 212 85 4 8 208 23 234 2.13e-74 225
Msa0335060 AT5G59150.2 62.805 164 59 2 55 217 3 165 1.11e-69 211
Msa0335060 AT4G35860.1 48.095 210 106 2 10 217 3 211 1.94e-65 201
Msa0335060 AT4G17170.1 48.611 216 94 3 10 216 3 210 2.81e-65 201
Msa0335060 AT4G17160.1 50.481 208 96 3 10 216 3 204 8.65e-64 197
Msa0335060 AT1G02130.1 47.642 212 95 3 9 217 4 202 1.18e-60 189
Msa0335060 AT5G47200.1 45.755 212 104 2 7 218 2 202 6.23e-58 182
Msa0335060 AT4G17530.1 45.755 212 104 2 7 218 2 202 9.02e-58 181
Msa0335060 AT3G11730.1 43.541 209 110 2 8 216 3 203 1.36e-54 173
Msa0335060 AT3G09900.1 43.119 218 119 2 1 217 3 216 8.16e-54 172
Msa0335060 AT5G03520.1 43.119 218 117 2 1 217 3 214 8.20e-54 172
Msa0335060 AT3G46060.2 42.105 209 115 3 9 216 11 214 1.83e-52 168
Msa0335060 AT3G46060.3 42.105 209 115 3 9 216 11 214 1.83e-52 168
Msa0335060 AT3G46060.1 42.105 209 115 3 9 216 11 214 1.83e-52 168
Msa0335060 AT5G59840.1 41.148 209 117 2 9 216 11 214 3.75e-52 167
Msa0335060 AT3G54840.1 46.471 170 90 1 8 176 28 197 4.93e-52 167
Msa0335060 AT4G19640.1 47.239 163 86 0 15 177 12 174 9.71e-52 166
Msa0335060 AT3G54840.3 47.531 162 84 1 16 176 2 163 1.49e-51 164
Msa0335060 AT3G53610.2 40.670 209 118 2 9 216 11 214 4.65e-51 165
Msa0335060 AT3G53610.3 40.670 209 118 2 9 216 11 214 4.65e-51 165
Msa0335060 AT3G53610.1 40.670 209 118 2 9 216 11 214 4.65e-51 165
Msa0335060 AT5G45130.1 46.012 163 88 0 15 177 12 174 6.86e-51 164
Msa0335060 AT3G54840.2 47.826 161 83 1 8 167 28 188 8.85e-51 163
Msa0335060 AT1G43890.3 47.644 191 96 4 1 189 1 189 1.76e-49 160
Msa0335060 AT1G43890.1 47.644 191 96 4 1 189 1 189 1.76e-49 160
Msa0335060 AT1G43890.2 47.644 191 96 4 1 189 1 189 1.76e-49 160
Msa0335060 AT5G45130.2 45.342 161 88 0 17 177 22 182 4.62e-49 159
Msa0335060 AT4G35860.2 46.386 166 82 2 55 216 2 164 5.18e-47 153
Msa0335060 AT5G03530.2 42.922 219 114 6 1 217 1 210 8.97e-45 149
Msa0335060 AT5G03530.1 42.922 219 114 6 1 217 1 210 8.97e-45 149
Msa0335060 AT4G19640.3 48.855 131 67 0 15 145 12 142 2.89e-40 136
Msa0335060 AT4G19640.2 50.862 116 57 0 15 130 12 127 3.03e-39 132
Msa0335060 AT2G22290.1 35.669 157 101 0 14 170 10 166 1.81e-38 132
Msa0335060 AT4G39890.1 36.076 158 100 1 14 170 10 167 4.18e-38 132
Msa0335060 AT5G10260.1 35.032 157 102 0 14 170 10 166 7.92e-38 130
Msa0335060 AT2G44610.1 35.669 157 101 0 14 170 10 166 2.55e-37 129
Msa0335060 AT5G03520.2 39.181 171 97 2 48 217 40 204 3.02e-37 129
Msa0335060 AT5G64990.1 34.783 161 105 0 14 174 8 168 2.72e-36 127
Msa0335060 AT3G09910.3 44.186 172 93 3 10 179 10 180 7.19e-36 125
Msa0335060 AT3G09910.1 44.186 172 93 3 10 179 10 180 7.19e-36 125
Msa0335060 AT3G09910.2 44.186 172 93 3 10 179 10 180 7.19e-36 125
Msa0335060 AT2G21880.1 38.182 165 95 2 13 170 9 173 4.16e-35 124
Msa0335060 AT3G18820.1 37.363 182 99 4 13 187 8 181 6.34e-35 123
Msa0335060 AT3G09910.5 43.787 169 92 3 10 176 10 177 6.51e-35 123
Msa0335060 AT3G09910.4 43.787 169 92 3 10 176 10 177 6.51e-35 123
Msa0335060 AT1G22740.1 38.272 162 93 2 13 167 8 169 7.42e-35 123
Msa0335060 AT5G46025.1 55.660 106 46 1 75 179 6 111 2.12e-34 119
Msa0335060 AT1G52280.1 35.673 171 103 2 13 176 8 178 4.38e-34 121
Msa0335060 AT5G64990.2 33.333 168 105 1 14 174 8 175 1.51e-33 120
Msa0335060 AT3G16100.1 37.037 162 95 2 13 167 8 169 4.55e-33 118
Msa0335060 AT4G09720.1 36.364 165 98 2 13 170 8 172 1.05e-32 117
Msa0335060 AT1G49300.2 35.165 182 103 3 13 187 8 181 3.48e-32 116
Msa0335060 AT1G49300.1 35.165 182 103 3 13 187 8 181 3.48e-32 116
Msa0335060 AT4G09720.4 35.882 170 97 3 13 170 8 177 2.19e-31 114
Msa0335060 AT4G09720.3 34.659 176 97 3 13 170 8 183 2.64e-30 112
Msa0335060 AT5G39620.1 38.182 165 93 3 14 170 6 169 3.87e-30 110
Msa0335060 AT5G55080.1 34.545 165 97 3 14 174 14 171 1.13e-26 102
Msa0335060 AT2G21880.4 35.811 148 88 2 30 170 1 148 2.24e-26 100
Msa0335060 AT2G21880.3 35.811 148 88 2 30 170 1 148 2.24e-26 100
Msa0335060 AT2G21880.2 33.333 165 95 3 13 170 9 165 2.95e-25 98.2
Msa0335060 AT2G44690.1 34.444 180 104 5 13 180 18 195 5.51e-25 97.8
Msa0335060 AT5G20020.1 33.117 154 100 2 14 167 14 164 7.04e-24 95.1
Msa0335060 AT5G20010.1 33.117 154 100 2 14 167 14 164 9.16e-24 94.7
Msa0335060 AT5G55190.1 33.117 154 100 2 14 167 14 164 9.46e-24 94.7
Msa0335060 AT4G09720.6 35.507 138 82 2 40 170 1 138 4.83e-22 89.0
Msa0335060 AT4G09720.5 35.507 138 82 2 40 170 1 138 4.83e-22 89.0
Msa0335060 AT4G09720.2 35.507 138 82 2 40 170 1 138 4.83e-22 89.0
Msa0335060 AT4G35020.1 35.088 171 89 6 13 167 6 170 9.28e-22 89.0
Msa0335060 AT4G35020.2 35.088 171 89 6 13 167 6 170 9.28e-22 89.0
Msa0335060 AT4G35020.3 35.088 171 89 6 13 167 6 170 9.28e-22 89.0
Msa0335060 AT1G75840.1 33.533 167 97 6 13 167 6 170 2.08e-21 88.2
Msa0335060 AT1G20090.1 33.533 167 97 6 13 167 5 169 3.87e-21 87.4
Msa0335060 AT4G08190.1 63.636 66 21 1 102 167 65 127 8.59e-21 84.7
Msa0335060 AT3G48040.1 30.601 183 109 6 13 183 8 184 2.46e-20 85.5
Msa0335060 AT4G28950.1 28.571 182 118 5 13 184 6 185 2.67e-20 85.5
Msa0335060 AT5G62880.1 30.114 176 109 5 13 176 8 181 5.14e-20 84.7
Msa0335060 AT3G51300.1 31.515 165 99 5 15 167 8 170 1.01e-19 83.6
Msa0335060 AT5G45970.1 37.500 120 72 3 13 131 6 123 1.92e-19 83.2
Msa0335060 AT2G17800.2 31.737 167 100 6 13 167 6 170 2.74e-19 82.4
Msa0335060 AT2G17800.1 31.737 167 100 6 13 167 6 170 2.74e-19 82.4
Msa0335060 AT4G35950.1 31.737 167 100 6 13 167 6 170 3.37e-19 82.4
Msa0335060 AT3G48040.2 35.000 120 75 3 13 131 8 125 1.48e-18 80.1
Msa0335060 AT4G35020.4 37.719 114 68 3 15 127 8 119 2.25e-18 79.0
Msa0335060 AT4G35020.5 37.719 114 68 3 15 127 8 119 2.25e-18 79.0
Msa0335060 AT5G62880.2 33.094 139 83 4 13 150 8 137 3.54e-18 79.3
Msa0335060 AT3G51290.2 30.159 126 75 4 54 167 647 771 1.61e-11 63.5
Msa0335060 AT5G09910.1 26.056 142 80 3 14 130 23 164 8.33e-11 60.8
Msa0335060 AT5G09910.4 26.056 142 80 3 14 130 23 164 8.33e-11 60.8

Find 89 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTTGACCTGTATGAATT+TGG 0.094207 2_4:+54128672 None:intergenic
ATAAGCATGACCACAATATT+AGG 0.173279 2_4:+54129166 None:intergenic
AATATTGTGGTCATGCTTAT+TGG 0.176164 2_4:-54129163 Msa0335060:CDS
CACTAGAAACGAGTTCAATT+TGG 0.247348 2_4:-54134498 Msa0335060:CDS
GTAGAGTTTGTTTCAACTAT+TGG 0.250340 2_4:+54134634 None:intergenic
GCTAGTCTTACATATGGTTT+TGG 0.283944 2_4:-54128776 Msa0335060:three_prime_UTR
CTAGTTCTAATCGGCGATTC+AGG 0.284120 2_4:-54134551 Msa0335060:CDS
GTTATTTGCTGCACCATTAC+TGG 0.287223 2_4:+54128619 None:intergenic
AAAGTTGTACTTAAACAAAT+AGG 0.313858 2_4:-54128700 Msa0335060:three_prime_UTR
AATCCAGGTTGCTCCATTTC+CGG 0.320810 2_4:-54134759 Msa0335060:five_prime_UTR
AGGAGGGAATTTCGGTGAAT+TGG 0.329562 2_4:+54134689 None:intergenic
ATTGTTTAGTCGAGGCTTAC+AGG 0.334133 2_4:-54134824 None:intergenic
AAGAATGAAGGAGGGAATTT+CGG 0.345840 2_4:+54134681 None:intergenic
TTGGAATCTAAATCCACTAT+TGG 0.346232 2_4:-54134479 Msa0335060:CDS
CATCTCAAACCTGATTATCT+TGG 0.347657 2_4:-54128504 None:intergenic
ATGTAACAAAACTAAACATA+TGG 0.353981 2_4:+54128558 None:intergenic
CGAGGCTTACAGGTCGAAAA+AGG 0.355566 2_4:-54134814 Msa0335060:five_prime_UTR
TGTTGATGCTAAAGTCATTA+AGG 0.361634 2_4:-54134429 Msa0335060:CDS
ATAACTTAACCAAGATAATC+AGG 0.362783 2_4:+54128495 None:intergenic
AGTCATTAAGGCTCAGATTT+GGG 0.364724 2_4:-54134417 Msa0335060:CDS
ATGTTTAAAGCATCATTTGC+AGG 0.365719 2_4:-54128750 Msa0335060:three_prime_UTR
GAATTTCGGTGAATTGGAAT+TGG 0.366954 2_4:+54134695 None:intergenic
AACTTGACCTGTATGAATTT+GGG 0.380874 2_4:+54128673 None:intergenic
CTTCATGGAGACTTCTGCTT+TGG 0.384252 2_4:-54129062 Msa0335060:CDS
AAGAAGAAAATGCGTTGTTC+CGG 0.389901 2_4:+54134740 None:intergenic
AAGTCATTAAGGCTCAGATT+TGG 0.391753 2_4:-54134418 Msa0335060:CDS
TGGATTTGATTTGATGTAAC+GGG 0.392825 2_4:+54134654 None:intergenic
AAAATGCGTTGTTCCGGAAA+TGG 0.401169 2_4:+54134746 None:intergenic
GAGGGAGTCTCTCTACTTCA+TGG 0.418666 2_4:-54129077 Msa0335060:CDS
AAACGTGAAAGAGGATTCTT+CGG 0.420021 2_4:-54128912 Msa0335060:CDS
CATAAGGCTAGTCTTACATA+TGG 0.431448 2_4:-54128782 Msa0335060:three_prime_UTR
AGCGAATTCAACACCAATAG+TGG 0.433002 2_4:+54134466 None:intergenic
AAGACTTTCCATCTTCTGTT+GGG 0.447210 2_4:+54129107 None:intergenic
AAAGACTTTCCATCTTCTGT+TGG 0.448264 2_4:+54129106 None:intergenic
TAAGCATGACCACAATATTA+GGG 0.453467 2_4:+54129167 None:intergenic
GATTTGGGATACTGCTGGTC+AGG 0.455851 2_4:-54134402 Msa0335060:CDS
GTTCTCAAATGTGGCACGCC+TGG 0.475604 2_4:+54129228 None:intergenic
GAATTTCAACTTGTAGCATA+AGG 0.479529 2_4:-54128798 Msa0335060:three_prime_UTR
CAATAACTAGAGGATGTATA+TGG 0.484795 2_4:+54128527 None:intergenic
TACACTTCTTCAACCATGGC+TGG 0.485058 2_4:-54134611 Msa0335060:exon
ATTTGGATGCTGCTCGAACT+AGG 0.492151 2_4:-54128879 Msa0335060:exon
CGATTAGAACTAGTTTGAAA+AGG 0.492988 2_4:+54134561 None:intergenic
CTAATCGGCGATTCAGGTGT+TGG 0.497795 2_4:-54134545 Msa0335060:CDS
AGCATCAACAGTCAAACTCT+TGG 0.503401 2_4:+54134442 None:intergenic
TACACGATTCCGCACAATCC+AGG 0.509461 2_4:-54134774 Msa0335060:five_prime_UTR
AGCAAGAAAGCAGTTGAAGC+GGG 0.518997 2_4:-54128980 Msa0335060:CDS
CCACATTTGAGAACGCTGCC+AGG 0.522619 2_4:-54129219 Msa0335060:CDS
CATCTTGTAAATGTCTGCAC+TGG 0.524710 2_4:-54128820 Msa0335060:three_prime_UTR
TGTAACAAAACTAAACATAT+GGG 0.528434 2_4:+54128559 None:intergenic
GGTGCTTCATGTATGTCAGT+TGG 0.529351 2_4:-54128858 Msa0335060:three_prime_UTR
GTTGCTGTCCCAACAGAAGA+TGG 0.535125 2_4:-54129115 Msa0335060:CDS
GTCTGCTCTGTATCCAGCCA+TGG 0.542247 2_4:+54134598 None:intergenic
GCAGTTGAAGCGGGTGAAGG+TGG 0.542492 2_4:-54128971 Msa0335060:CDS
CTACTACACTTCTTCAACCA+TGG 0.542912 2_4:-54134615 Msa0335060:exon
AGTGAATCTAGAAAGCAAGT+TGG 0.548595 2_4:+54134517 None:intergenic
TTGGATTTGATTTGATGTAA+CGG 0.549346 2_4:+54134653 None:intergenic
ACGGGAGGAAAGAATGAAGG+AGG 0.550945 2_4:+54134672 None:intergenic
ACAGACAATAAACGTGAAAG+AGG 0.555146 2_4:-54128921 Msa0335060:CDS
GTTCCGGAAATGGAGCAACC+TGG 0.556577 2_4:+54134756 None:intergenic
AGGACTACCCAAATTCATAC+AGG 0.557263 2_4:-54128680 Msa0335060:three_prime_UTR
GCTCAGATTTGGGATACTGC+TGG 0.571910 2_4:-54134407 Msa0335060:CDS
GAGCAAGAAAGCAGTTGAAG+CGG 0.576413 2_4:-54128981 Msa0335060:CDS
TACTTGTCTATGATGTCACC+AGG 0.586902 2_4:-54129246 Msa0335060:CDS
TCGCAACTCTTTCAACCACC+TGG 0.589547 2_4:+54129201 None:intergenic
TTATTGTCTGTCCTACAGAC+GGG 0.589827 2_4:+54128933 None:intergenic
AAAGCAGTTGAAGCGGGTGA+AGG 0.591230 2_4:-54128974 Msa0335060:CDS
GGGATACTGCTGGTCAGGAA+AGG 0.593119 2_4:-54134397 Msa0335060:intron
GTAACGGGAGGAAAGAATGA+AGG 0.594719 2_4:+54134669 None:intergenic
CGGGAGGAAAGAATGAAGGA+GGG 0.596258 2_4:+54134673 None:intergenic
TTTATTGTCTGTCCTACAGA+CGG 0.598655 2_4:+54128932 None:intergenic
CTTCTGTTGGGACAGCAACA+AGG 0.604051 2_4:+54129119 None:intergenic
GCTTACTACCGAGGAGCTGT+CGG 0.604595 2_4:-54129274 Msa0335060:CDS
TATTTGCTATGCTCCAGTAA+TGG 0.605685 2_4:-54128632 Msa0335060:three_prime_UTR
CCTGGCAGCGTTCTCAAATG+TGG 0.607575 2_4:+54129219 None:intergenic
GTAAAGCACCGACAGCTCCT+CGG 0.608510 2_4:+54129266 None:intergenic
TTGGGACAGCAACAAGGTGT+CGG 0.610129 2_4:+54129125 None:intergenic
TCCTCGTCAGTCCCGTCTGT+AGG 0.610460 2_4:-54128944 Msa0335060:CDS
TCACACAGACCCTAATATTG+TGG 0.615605 2_4:-54129176 Msa0335060:CDS
ATGGAGCAACCTGGATTGTG+CGG 0.618740 2_4:+54134765 None:intergenic
GTTTGAGATGCAATAACTAG+AGG 0.632605 2_4:+54128517 None:intergenic
CTGCTTTCTTGCTCACTATG+CGG 0.632736 2_4:+54128990 None:intergenic
ATTTGATTTGATGTAACGGG+AGG 0.645185 2_4:+54134657 None:intergenic
TCCTACAGACGGGACTGACG+AGG 0.654473 2_4:+54128943 None:intergenic
AGTAAGCACTAGTGATGGCA+CGG 0.659457 2_4:+54129290 None:intergenic
TCGGTAGTAAGCACTAGTGA+TGG 0.661244 2_4:+54129285 None:intergenic
ATCACTAGTGCTTACTACCG+AGG 0.674407 2_4:-54129283 Msa0335060:CDS
CATTTGAGAACGCTGCCAGG+TGG 0.693994 2_4:-54129216 Msa0335060:CDS
AGACATTTACAAGATGACAC+AGG 0.741946 2_4:+54128827 None:intergenic
TGTAGAAAATGCATTCACTG+AGG 0.755384 2_4:-54129029 Msa0335060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTGAAATTAAAGAAA+AGG + chr2_4:54128966-54128985 None:intergenic 10.0%
!!! ATTGATAATTGATAAATAAA+GGG + chr2_4:54132130-54132149 None:intergenic 10.0%
!!! TATTGATAATTGATAAATAA+AGG + chr2_4:54132131-54132150 None:intergenic 10.0%
!!! AAGTTTTTTATTTTTTTTGA+GGG - chr2_4:54133495-54133514 Msa0335060:intron 10.0%
!! AAATAAGAACAAATCAATAA+GGG + chr2_4:54129026-54129045 None:intergenic 15.0%
!! TCAAAATTTAAACAATCAAT+CGG + chr2_4:54129159-54129178 None:intergenic 15.0%
!! TAATGTGATCAATAAATTTA+AGG + chr2_4:54129527-54129546 None:intergenic 15.0%
!! GTGTTTAAAAATAAAAATAG+AGG + chr2_4:54130760-54130779 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG + chr2_4:54131936-54131955 None:intergenic 15.0%
!!! AGCTCTTTTTTTTTTTTTTT+GGG + chr2_4:54132169-54132188 None:intergenic 15.0%
!!! AAGCTCTTTTTTTTTTTTTT+TGG + chr2_4:54132170-54132189 None:intergenic 15.0%
!! AACATGTAATTAAGAATTAT+TGG + chr2_4:54132282-54132301 None:intergenic 15.0%
!!! AGATTTTTTGGATAAAATTA+CGG + chr2_4:54133256-54133275 None:intergenic 15.0%
!! CTCAAAAAAAATAAAAAACT+TGG + chr2_4:54133496-54133515 None:intergenic 15.0%
!!! CAAGTTTTTTATTTTTTTTG+AGG - chr2_4:54133494-54133513 Msa0335060:intron 15.0%
!! GAAATAAGAACAAATCAATA+AGG + chr2_4:54129027-54129046 None:intergenic 20.0%
!!! ATATGTAGTAGTAGTTTTTA+GGG - chr2_4:54129102-54129121 Msa0335060:CDS 20.0%
!! CAAAATTTAAACAATCAATC+GGG + chr2_4:54129158-54129177 None:intergenic 20.0%
!!! AAACATTTTTGTTTATTTGC+CGG - chr2_4:54129246-54129265 Msa0335060:CDS 20.0%
!!! AGTATGATTTTGTTTTTACA+CGG - chr2_4:54129287-54129306 Msa0335060:CDS 20.0%
!!! AAATTTAAATCTGCACTTTT+TGG + chr2_4:54129396-54129415 None:intergenic 20.0%
!! ATTTAATTCATATACACTGT+CGG + chr2_4:54129504-54129523 None:intergenic 20.0%
!! TATTTCAAAATCGTTCTTAT+TGG - chr2_4:54129555-54129574 Msa0335060:intron 20.0%
!!! TTCAAAGTTTTCTATAAACT+TGG - chr2_4:54129587-54129606 Msa0335060:intron 20.0%
!!! AATAGTTTTCTAATCATTTC+AGG + chr2_4:54130017-54130036 None:intergenic 20.0%
!! TGAAATGATTAGAAAACTAT+TGG - chr2_4:54130016-54130035 Msa0335060:intron 20.0%
!! AGATAAGTTAGATTTGTAAA+GGG + chr2_4:54130139-54130158 None:intergenic 20.0%
!! AAGATAAGTTAGATTTGTAA+AGG + chr2_4:54130140-54130159 None:intergenic 20.0%
!! CAAGCATAGATAAAAATATT+CGG - chr2_4:54130273-54130292 Msa0335060:intron 20.0%
!! AAGCATAGATAAAAATATTC+GGG - chr2_4:54130274-54130293 Msa0335060:intron 20.0%
!!! TAAATCCTATTTTTTCAGAT+AGG + chr2_4:54130669-54130688 None:intergenic 20.0%
!! TCTGAAAAAATAGGATTTAT+AGG - chr2_4:54130670-54130689 Msa0335060:intron 20.0%
!! CTGAAAAAATAGGATTTATA+GGG - chr2_4:54130671-54130690 Msa0335060:intron 20.0%
!! TGAAAAAATAGGATTTATAG+GGG - chr2_4:54130672-54130691 Msa0335060:intron 20.0%
!!! ATTTTATGCAGAATCATAAA+GGG + chr2_4:54131133-54131152 None:intergenic 20.0%
!!! AAGATTACACATTTTCAAAT+GGG + chr2_4:54131896-54131915 None:intergenic 20.0%
!! ATTGATAAATAAAGGGAAAA+AGG + chr2_4:54132123-54132142 None:intergenic 20.0%
!!! TCTTTTTTTTTTTTTTTGGG+GGG + chr2_4:54132166-54132185 None:intergenic 20.0%
!!! CTCTTTTTTTTTTTTTTTGG+GGG + chr2_4:54132167-54132186 None:intergenic 20.0%
!!! GCTCTTTTTTTTTTTTTTTG+GGG + chr2_4:54132168-54132187 None:intergenic 20.0%
!!! CAGTTTTACATAGATTAATA+AGG + chr2_4:54132942-54132961 None:intergenic 20.0%
!! TGAACTTATGTTTATTACAT+AGG - chr2_4:54132963-54132982 Msa0335060:intron 20.0%
!!! GATTTTTTGGATAAAATTAC+GGG + chr2_4:54133255-54133274 None:intergenic 20.0%
!! ATATATTATGTGACTATGTT+AGG - chr2_4:54133299-54133318 Msa0335060:intron 20.0%
!! TAAATGTTTACTATACTCAA+TGG - chr2_4:54133574-54133593 Msa0335060:intron 20.0%
!! CATTATCTTGTATAAATATG+AGG + chr2_4:54133619-54133638 None:intergenic 20.0%
!! TACTTAAAGATATAGAATGA+AGG - chr2_4:54133701-54133720 Msa0335060:intron 20.0%
!!! TTTTTTTGAATAAACTGAGT+TGG - chr2_4:54133888-54133907 Msa0335060:intron 20.0%
!! AAAGTTGTACTTAAACAAAT+AGG - chr2_4:54134621-54134640 Msa0335060:five_prime_UTR 20.0%
!! TGTAACAAAACTAAACATAT+GGG + chr2_4:54134765-54134784 None:intergenic 20.0%
!! ATGTAACAAAACTAAACATA+TGG + chr2_4:54134766-54134785 None:intergenic 20.0%
!!! TTGGATTTGATTTGATGTAA+CGG + chr2_4:54128671-54128690 None:intergenic 25.0%
!!! CTTTTCAAACTAGTTCTAAT+CGG - chr2_4:54128761-54128780 Msa0335060:three_prime_UTR 25.0%
!! GATATGTAGTAGTAGTTTTT+AGG - chr2_4:54129101-54129120 Msa0335060:CDS 25.0%
!!! AATTTTGATACGCTGTTAAA+AGG - chr2_4:54129183-54129202 Msa0335060:CDS 25.0%
!! AATCACGTATTCAATCATTT+TGG - chr2_4:54129346-54129365 Msa0335060:intron 25.0%
!! TATTCAATCATTTTGGACAT+CGG - chr2_4:54129353-54129372 Msa0335060:intron 25.0%
!! TTTTCTATAAACTTGGCATT+GGG - chr2_4:54129594-54129613 Msa0335060:intron 25.0%
! TTAAGGATTAAGGGTAATAA+AGG + chr2_4:54129788-54129807 None:intergenic 25.0%
! TTTATTAATCCATGTAACCA+TGG - chr2_4:54130158-54130177 Msa0335060:intron 25.0%
!!! TGCCCAAATAATATTGATTT+GGG - chr2_4:54130404-54130423 Msa0335060:intron 25.0%
! ACCCCAAATCAATATTATTT+GGG + chr2_4:54130409-54130428 None:intergenic 25.0%
! AACCCCAAATCAATATTATT+TGG + chr2_4:54130410-54130429 None:intergenic 25.0%
! CTTTGTAAGAAAAAATGAAG+AGG + chr2_4:54130711-54130730 None:intergenic 25.0%
!! TTTTAAACACAAGTTACTCA+TGG - chr2_4:54130770-54130789 Msa0335060:intron 25.0%
! TTTAAACACAAGTTACTCAT+GGG - chr2_4:54130771-54130790 Msa0335060:intron 25.0%
!! TTTTATGCAGAATCATAAAG+GGG + chr2_4:54131132-54131151 None:intergenic 25.0%
!! GATTTTATGCAGAATCATAA+AGG + chr2_4:54131134-54131153 None:intergenic 25.0%
! ACTATGTCGTATTAACTATT+AGG + chr2_4:54131198-54131217 None:intergenic 25.0%
! ACTTAAAAACACATGAACAT+TGG + chr2_4:54131450-54131469 None:intergenic 25.0%
!! TTATTGAGTTGCTTTAGATT+AGG - chr2_4:54131655-54131674 Msa0335060:intron 25.0%
! GTACAGTAGAATGTAATAAT+AGG - chr2_4:54131757-54131776 Msa0335060:intron 25.0%
!! CAAGATTACACATTTTCAAA+TGG + chr2_4:54131897-54131916 None:intergenic 25.0%
! AAATATGGTCAAAGTAAGTT+AGG + chr2_4:54131921-54131940 None:intergenic 25.0%
!!! TTTTTTTTTTTTTTTGGGGG+GGG + chr2_4:54132164-54132183 None:intergenic 25.0%
!!! CTTTTTTTTTTTTTTTGGGG+GGG + chr2_4:54132165-54132184 None:intergenic 25.0%
!! TTGTATTCATTTGATAGCAT+GGG - chr2_4:54132353-54132372 Msa0335060:intron 25.0%
! TAACAAATATCAAAGGGAAT+TGG + chr2_4:54132592-54132611 None:intergenic 25.0%
! ATGAGCTAACAAATATCAAA+GGG + chr2_4:54132598-54132617 None:intergenic 25.0%
! AAACGAGATAGAAATCTAAA+AGG + chr2_4:54132771-54132790 None:intergenic 25.0%
! TTAATAAGGATAACTGGATA+AGG + chr2_4:54132928-54132947 None:intergenic 25.0%
! CATAGATTAATAAGGATAAC+TGG + chr2_4:54132934-54132953 None:intergenic 25.0%
! TATATCTAGTTAGTGTATCA+GGG + chr2_4:54133284-54133303 None:intergenic 25.0%
! ATATATCTAGTTAGTGTATC+AGG + chr2_4:54133285-54133304 None:intergenic 25.0%
! TATAGAAGCAGTTATCTATT+TGG - chr2_4:54133323-54133342 Msa0335060:intron 25.0%
! ATAGAAGCAGTTATCTATTT+GGG - chr2_4:54133324-54133343 Msa0335060:intron 25.0%
!! AGGGAATGATTTGTATAAAT+AGG - chr2_4:54133364-54133383 Msa0335060:intron 25.0%
!! GAATGATTTGTATAAATAGG+AGG - chr2_4:54133367-54133386 Msa0335060:intron 25.0%
! TGTTTGGATATAGAATAAAG+GGG + chr2_4:54133675-54133694 None:intergenic 25.0%
! CTGTTTGGATATAGAATAAA+GGG + chr2_4:54133676-54133695 None:intergenic 25.0%
! ATCAATTGCAAAAAAAATCG+AGG + chr2_4:54133868-54133887 None:intergenic 25.0%
!!! AGGATTTGTTTTTCTTATAG+CGG - chr2_4:54134591-54134610 Msa0335060:CDS 25.0%
!! AATTGGAGTTTTTGAGGAAA+AGG + chr2_4:54128612-54128631 None:intergenic 30.0%
! AATTGGAATTGGAGTTTTTG+AGG + chr2_4:54128618-54128637 None:intergenic 30.0%
!! TGGATTTGATTTGATGTAAC+GGG + chr2_4:54128670-54128689 None:intergenic 30.0%
! GTAGAGTTTGTTTCAACTAT+TGG + chr2_4:54128690-54128709 None:intergenic 30.0%
! CGATTAGAACTAGTTTGAAA+AGG + chr2_4:54128763-54128782 None:intergenic 30.0%
TTGGAATCTAAATCCACTAT+TGG - chr2_4:54128842-54128861 Msa0335060:three_prime_UTR 30.0%
TGTTGATGCTAAAGTCATTA+AGG - chr2_4:54128892-54128911 Msa0335060:CDS 30.0%
!!! TAGTAGTAGTTTTTAGGGTT+TGG - chr2_4:54129107-54129126 Msa0335060:CDS 30.0%
TGTTAAAAGGTCGCAATAAT+TGG - chr2_4:54129196-54129215 Msa0335060:CDS 30.0%
! GTTTTCTATAAACTTGGCAT+TGG - chr2_4:54129593-54129612 Msa0335060:intron 30.0%
TTTCTATAAACTTGGCATTG+GGG - chr2_4:54129595-54129614 Msa0335060:intron 30.0%
GTGTTTAAATCACTTTCAAG+TGG - chr2_4:54129669-54129688 Msa0335060:intron 30.0%
ATTTGAAAAAATTTCCACCG+AGG - chr2_4:54129741-54129760 Msa0335060:intron 30.0%
!! CTGTGGATTTTAAGGATTAA+GGG + chr2_4:54129797-54129816 None:intergenic 30.0%
!! TCTGTGGATTTTAAGGATTA+AGG + chr2_4:54129798-54129817 None:intergenic 30.0%
AAAGCAAGTCAACAAATGTA+CGG + chr2_4:54129823-54129842 None:intergenic 30.0%
! AGTTTTCTAATCATTTCAGG+AGG + chr2_4:54130014-54130033 None:intergenic 30.0%
TAAAGGGTGAAATATGTTCA+GGG + chr2_4:54130123-54130142 None:intergenic 30.0%
! GTGCCCAAATAATATTGATT+TGG - chr2_4:54130403-54130422 Msa0335060:intron 30.0%
!! GCCCAAATAATATTGATTTG+GGG - chr2_4:54130405-54130424 Msa0335060:intron 30.0%
ATGATCCACTAATAGGAAAT+GGG + chr2_4:54130618-54130637 None:intergenic 30.0%
TATGATCCACTAATAGGAAA+TGG + chr2_4:54130619-54130638 None:intergenic 30.0%
CCACAAACATAAGTATAACT+GGG + chr2_4:54130645-54130664 None:intergenic 30.0%
CCAGTTATACTTATGTTTGT+GGG - chr2_4:54130643-54130662 Msa0335060:intron 30.0%
AATACGACATAGTGCTTATA+TGG - chr2_4:54131205-54131224 Msa0335060:intron 30.0%
!!! AGTGTTGGTTTTACAAAGAA+GGG + chr2_4:54131290-54131309 None:intergenic 30.0%
!!! AAGTGTTGGTTTTACAAAGA+AGG + chr2_4:54131291-54131310 None:intergenic 30.0%
TGACAGTAACACATTGATAT+CGG + chr2_4:54131418-54131437 None:intergenic 30.0%
!!! ATGTGTTTTTAAGTGCTTCA+TGG - chr2_4:54131456-54131475 Msa0335060:intron 30.0%
TCCACATATATAAAGGATAG+AGG - chr2_4:54131482-54131501 Msa0335060:intron 30.0%
ACCTCTATCCTTTATATATG+TGG + chr2_4:54131486-54131505 None:intergenic 30.0%
CATATATAAAGGATAGAGGT+AGG - chr2_4:54131486-54131505 Msa0335060:intron 30.0%
AACTCAATAACAGACCAATA+TGG + chr2_4:54131645-54131664 None:intergenic 30.0%
GAAATGAATGAAAAGGTCAA+TGG + chr2_4:54131844-54131863 None:intergenic 30.0%
AGTAAGGGAAATGAATGAAA+AGG + chr2_4:54131851-54131870 None:intergenic 30.0%
TTAAGCTCAAAATTGTGCAT+TGG - chr2_4:54132048-54132067 Msa0335060:intron 30.0%
TCAACTGTGTCAAGTATTAT+GGG - chr2_4:54132085-54132104 Msa0335060:intron 30.0%
!!! TTTTTTTTTTTTTTGGGGGG+GGG + chr2_4:54132163-54132182 None:intergenic 30.0%
ATCAAATGAATACAAGTTGC+AGG + chr2_4:54132348-54132367 None:intergenic 30.0%
! CTTGTATTCATTTGATAGCA+TGG - chr2_4:54132352-54132371 Msa0335060:intron 30.0%
! TGTATTCATTTGATAGCATG+GGG - chr2_4:54132354-54132373 Msa0335060:intron 30.0%
CATGAGCTAACAAATATCAA+AGG + chr2_4:54132599-54132618 None:intergenic 30.0%
ACCAGAACTTCTAGTAATAT+GGG + chr2_4:54132707-54132726 None:intergenic 30.0%
AAGAACTGAACTTGTATCAA+AGG - chr2_4:54132817-54132836 Msa0335060:intron 30.0%
TAACATCATATTCACTTCTG+CGG - chr2_4:54132858-54132877 Msa0335060:intron 30.0%
TCACGTTTGACAAAATTACT+AGG - chr2_4:54133149-54133168 Msa0335060:intron 30.0%
! ATTTGGGACAGTTAATTAGA+TGG - chr2_4:54133340-54133359 Msa0335060:intron 30.0%
TTGAAAGAATGAGAAAGAAC+AGG - chr2_4:54133434-54133453 Msa0335060:intron 30.0%
TGAAAGAATGAGAAAGAACA+GGG - chr2_4:54133435-54133454 Msa0335060:intron 30.0%
ACATTTAGTAAATAGAGCAG+TGG + chr2_4:54133561-54133580 None:intergenic 30.0%
TGTATAAATATGAGGATGCA+AGG + chr2_4:54133611-54133630 None:intergenic 30.0%
CCTGTTTGGATATAGAATAA+AGG + chr2_4:54133677-54133696 None:intergenic 30.0%
CCTTTATTCTATATCCAAAC+AGG - chr2_4:54133674-54133693 Msa0335060:intron 30.0%
TCTTTAAGTAATAGCCTGTT+TGG + chr2_4:54133691-54133710 None:intergenic 30.0%
CATCTACTCAATATATTCTG+CGG - chr2_4:54133783-54133802 Msa0335060:intron 30.0%
ATTAGTTATGCCGTTAACAA+TGG - chr2_4:54133945-54133964 Msa0335060:intron 30.0%
TTAGTTATGCCGTTAACAAT+GGG - chr2_4:54133946-54133965 Msa0335060:intron 30.0%
TAAGCATGACCACAATATTA+GGG + chr2_4:54134157-54134176 None:intergenic 30.0%
ATAAGCATGACCACAATATT+AGG + chr2_4:54134158-54134177 None:intergenic 30.0%
AATATTGTGGTCATGCTTAT+TGG - chr2_4:54134158-54134177 Msa0335060:intron 30.0%
! AGTGAATGCATTTTCTACAT+TGG + chr2_4:54134291-54134310 None:intergenic 30.0%
GAATTTCAACTTGTAGCATA+AGG - chr2_4:54134523-54134542 Msa0335060:CDS 30.0%
! ATGTTTAAAGCATCATTTGC+AGG - chr2_4:54134571-54134590 Msa0335060:CDS 30.0%
AACTTGACCTGTATGAATTT+GGG + chr2_4:54134651-54134670 None:intergenic 30.0%
AAACTTGACCTGTATGAATT+TGG + chr2_4:54134652-54134671 None:intergenic 30.0%
CAATAACTAGAGGATGTATA+TGG + chr2_4:54134797-54134816 None:intergenic 30.0%
AAGAAGAAAATGCGTTGTTC+CGG + chr2_4:54128584-54128603 None:intergenic 35.0%
GAATTTCGGTGAATTGGAAT+TGG + chr2_4:54128629-54128648 None:intergenic 35.0%
AAGAATGAAGGAGGGAATTT+CGG + chr2_4:54128643-54128662 None:intergenic 35.0%
!! ATTTGATTTGATGTAACGGG+AGG + chr2_4:54128667-54128686 None:intergenic 35.0%
AGTGAATCTAGAAAGCAAGT+TGG + chr2_4:54128807-54128826 None:intergenic 35.0%
CACTAGAAACGAGTTCAATT+TGG - chr2_4:54128823-54128842 Msa0335060:three_prime_UTR 35.0%
AAGTCATTAAGGCTCAGATT+TGG - chr2_4:54128903-54128922 Msa0335060:CDS 35.0%
AGTCATTAAGGCTCAGATTT+GGG - chr2_4:54128904-54128923 Msa0335060:CDS 35.0%
TGTTGTCAATCACTCATTAC+CGG + chr2_4:54129268-54129287 None:intergenic 35.0%
GAAGTCGTTCGATAAAGATT+GGG + chr2_4:54129429-54129448 None:intergenic 35.0%
CATTCACGAATTCAAGACAT+CGG + chr2_4:54129451-54129470 None:intergenic 35.0%
GCGTGCACATGATAATTTAT+TGG - chr2_4:54129647-54129666 Msa0335060:intron 35.0%
TTGTCAAATAGTGGCTATAG+TGG - chr2_4:54129694-54129713 Msa0335060:intron 35.0%
TAACAAGTCACGTATGTACA+TGG + chr2_4:54129857-54129876 None:intergenic 35.0%
TTCTAATCATTTCAGGAGGT+TGG + chr2_4:54130010-54130029 None:intergenic 35.0%
GTAAAGGGTGAAATATGTTC+AGG + chr2_4:54130124-54130143 None:intergenic 35.0%
!! TTTTGACTACCATGGTTACA+TGG + chr2_4:54130170-54130189 None:intergenic 35.0%
!! GGGTTTTATGATCCACTAAT+AGG + chr2_4:54130625-54130644 None:intergenic 35.0%
CCCAGTTATACTTATGTTTG+TGG - chr2_4:54130642-54130661 Msa0335060:intron 35.0%
CCCACAAACATAAGTATAAC+TGG + chr2_4:54130646-54130665 None:intergenic 35.0%
!! ACTCTCTATTTCTGTTCTGT+AGG - chr2_4:54130862-54130881 Msa0335060:intron 35.0%
TCTGTAGGATTAGATGTTCA+TGG - chr2_4:54130877-54130896 Msa0335060:intron 35.0%
TCATAAAGGGGAGGTAAAAT+CGG + chr2_4:54131120-54131139 None:intergenic 35.0%
ACGTCTTTGATCATAAGTGT+TGG + chr2_4:54131305-54131324 None:intergenic 35.0%
ATGGCGTTCCACATATATAA+AGG - chr2_4:54131475-54131494 Msa0335060:intron 35.0%
ATAAAGGATAGAGGTAGGTA+TGG - chr2_4:54131491-54131510 Msa0335060:intron 35.0%
TACTGCAATTCATTGCAACT+AGG + chr2_4:54131527-54131546 None:intergenic 35.0%
AATAACAGACCAATATGGCT+GGG + chr2_4:54131640-54131659 None:intergenic 35.0%
!!! AATGGCCTTTGAAGCATTTT+GGG + chr2_4:54131826-54131845 None:intergenic 35.0%
TTCAAATGGGTCATCAATTG+CGG + chr2_4:54131883-54131902 None:intergenic 35.0%
GTCAACTGTGTCAAGTATTA+TGG - chr2_4:54132084-54132103 Msa0335060:intron 35.0%
!!! TTTTTTTTTTTTTGGGGGGG+GGG + chr2_4:54132162-54132181 None:intergenic 35.0%
TTGTGAAAACAAGTGGGATA+CGG + chr2_4:54132237-54132256 None:intergenic 35.0%
CCTTGATTGTGAAAACAAGT+GGG + chr2_4:54132243-54132262 None:intergenic 35.0%
TCCTTGATTGTGAAAACAAG+TGG + chr2_4:54132244-54132263 None:intergenic 35.0%
!! ACTTGTTTTCACAATCAAGG+AGG - chr2_4:54132243-54132262 Msa0335060:intron 35.0%
ATTAAGAATTATTGGCCAGC+TGG + chr2_4:54132274-54132293 None:intergenic 35.0%
! GTATTCATTTGATAGCATGG+GGG - chr2_4:54132355-54132374 Msa0335060:intron 35.0%
! TATTCATTTGATAGCATGGG+GGG - chr2_4:54132356-54132375 Msa0335060:intron 35.0%
AGATCGGAATTGCATTAACA+TGG + chr2_4:54132444-54132463 None:intergenic 35.0%
TGACAAAGTTGCATCAAGAT+CGG + chr2_4:54132460-54132479 None:intergenic 35.0%
ATTCTTTCCAACACCTTGTA+AGG - chr2_4:54132480-54132499 Msa0335060:intron 35.0%
! GAGCTTACAAATTGTTTCTC+AGG - chr2_4:54132634-54132653 Msa0335060:intron 35.0%
TAGTAATATGGGAGAACCTT+GGG + chr2_4:54132696-54132715 None:intergenic 35.0%
TCCCATATTACTAGAAGTTC+TGG - chr2_4:54132703-54132722 Msa0335060:intron 35.0%
CACCAGAACTTCTAGTAATA+TGG + chr2_4:54132708-54132727 None:intergenic 35.0%
CCATAATACAAATTGCAGCT+AGG + chr2_4:54132739-54132758 None:intergenic 35.0%
CCTAGCTGCAATTTGTATTA+TGG - chr2_4:54132736-54132755 Msa0335060:intron 35.0%
GATACAAGTTCAGTTCTTGA+TGG + chr2_4:54132815-54132834 None:intergenic 35.0%
AAGGATAACTGGATAAGGTT+TGG + chr2_4:54132923-54132942 None:intergenic 35.0%
GTGACAGTGTTGTAAAATAG+TGG - chr2_4:54132985-54133004 Msa0335060:intron 35.0%
CGTTTGACAAAATTACTAGG+TGG - chr2_4:54133152-54133171 Msa0335060:intron 35.0%
TGGTCTGTAAGTTGTTCATA+TGG - chr2_4:54133172-54133191 Msa0335060:intron 35.0%
GTTCATATGGCAAAGATAGT+AGG - chr2_4:54133185-54133204 Msa0335060:intron 35.0%
!!! ATCAGGGAGGTAAGATTTTT+TGG + chr2_4:54133268-54133287 None:intergenic 35.0%
GGACAGTTAATTAGATGGTA+GGG - chr2_4:54133345-54133364 Msa0335060:intron 35.0%
GAAAGAATGAGAAAGAACAG+GGG - chr2_4:54133436-54133455 Msa0335060:intron 35.0%
GGATATAGAATAAAGGGGAT+TGG + chr2_4:54133670-54133689 None:intergenic 35.0%
GTATCATCATCAGATACATG+TGG + chr2_4:54133756-54133775 None:intergenic 35.0%
AATAACTAACAAGAGAGACC+AGG + chr2_4:54133832-54133851 None:intergenic 35.0%
TGCTTTGCAACAAAAATGCA+CGG + chr2_4:54133915-54133934 None:intergenic 35.0%
AAGACTTTCCATCTTCTGTT+GGG + chr2_4:54134217-54134236 None:intergenic 35.0%
AAAGACTTTCCATCTTCTGT+TGG + chr2_4:54134218-54134237 None:intergenic 35.0%
TGTAGAAAATGCATTCACTG+AGG - chr2_4:54134292-54134311 Msa0335060:intron 35.0%
TTTATTGTCTGTCCTACAGA+CGG + chr2_4:54134392-54134411 None:intergenic 35.0%
ACAGACAATAAACGTGAAAG+AGG - chr2_4:54134400-54134419 Msa0335060:CDS 35.0%
AAACGTGAAAGAGGATTCTT+CGG - chr2_4:54134409-54134428 Msa0335060:CDS 35.0%
!!! TCTTCGGTTTTGAAGAGATT+TGG - chr2_4:54134425-54134444 Msa0335060:CDS 35.0%
AGACATTTACAAGATGACAC+AGG + chr2_4:54134497-54134516 None:intergenic 35.0%
!! CATAAGGCTAGTCTTACATA+TGG - chr2_4:54134539-54134558 Msa0335060:CDS 35.0%
!!! GCTAGTCTTACATATGGTTT+TGG - chr2_4:54134545-54134564 Msa0335060:CDS 35.0%
!!! ACAGGTCAAGTTTTATTTGC+AGG - chr2_4:54134659-54134678 Msa0335060:five_prime_UTR 35.0%
!! TATTTGCTATGCTCCAGTAA+TGG - chr2_4:54134689-54134708 Msa0335060:five_prime_UTR 35.0%
! GTTTGAGATGCAATAACTAG+AGG + chr2_4:54134807-54134826 None:intergenic 35.0%
GTCGAAAAAGGAGAAAAGTG+TGG - chr2_4:54128519-54128538 Msa0335060:three_prime_UTR 40.0%
AAAATGCGTTGTTCCGGAAA+TGG + chr2_4:54128578-54128597 None:intergenic 40.0%
CTACTACACTTCTTCAACCA+TGG - chr2_4:54128706-54128725 Msa0335060:three_prime_UTR 40.0%
AGCGAATTCAACACCAATAG+TGG + chr2_4:54128858-54128877 None:intergenic 40.0%
AGCATCAACAGTCAAACTCT+TGG + chr2_4:54128882-54128901 None:intergenic 40.0%
ACAATCAATCGGGATACGAA+AGG + chr2_4:54129148-54129167 None:intergenic 40.0%
TACACGGACAGTGTAGAATT+CGG - chr2_4:54129303-54129322 Msa0335060:intron 40.0%
! TCAATCATTTTGGACATCGG+TGG - chr2_4:54129356-54129375 Msa0335060:intron 40.0%
! CAATCATTTTGGACATCGGT+GGG - chr2_4:54129357-54129376 Msa0335060:intron 40.0%
!! CTGCACTTTTTGGACCTAAT+CGG + chr2_4:54129386-54129405 None:intergenic 40.0%
GGAAGTCGTTCGATAAAGAT+TGG + chr2_4:54129430-54129449 None:intergenic 40.0%
TTCATATACACTGTCGGATC+CGG + chr2_4:54129498-54129517 None:intergenic 40.0%
!! CAAGTGGTGTTGTCAAATAG+TGG - chr2_4:54129685-54129704 Msa0335060:intron 40.0%
TCAGTAAAGCTGACATTCCT+CGG + chr2_4:54129761-54129780 None:intergenic 40.0%
! TACGGCATCTGTGGATTTTA+AGG + chr2_4:54129805-54129824 None:intergenic 40.0%
!! GTTGACTTGCTTTATGACCA+TGG - chr2_4:54129830-54129849 Msa0335060:intron 40.0%
!! GAGTATTGTGTTGATGACAC+TGG - chr2_4:54129881-54129900 Msa0335060:intron 40.0%
!! TATTGTGTTGATGACACTGG+TGG - chr2_4:54129884-54129903 Msa0335060:intron 40.0%
ACAAGTTACAACAACCCAAC+TGG - chr2_4:54130097-54130116 Msa0335060:intron 40.0%
AAATATGTTCAGGGCCAGTT+GGG + chr2_4:54130114-54130133 None:intergenic 40.0%
!!! ACACACGATTTTGACTACCA+TGG + chr2_4:54130178-54130197 None:intergenic 40.0%
ACACAAGAGAAATACTTGCC+TGG - chr2_4:54130247-54130266 Msa0335060:intron 40.0%
CACAAGAGAAATACTTGCCT+GGG - chr2_4:54130248-54130267 Msa0335060:intron 40.0%
! TTTTATCTATGCTTGTGCCC+AGG + chr2_4:54130268-54130287 None:intergenic 40.0%
!! CAATCGGGTTTTGGTGAAAT+CGG - chr2_4:54130457-54130476 Msa0335060:intron 40.0%
!! AATCGGGTTTTGGTGAAATC+GGG - chr2_4:54130458-54130477 Msa0335060:intron 40.0%
CGAATCTGCAATTAACCAGT+GGG + chr2_4:54130494-54130513 None:intergenic 40.0%
ACGAATCTGCAATTAACCAG+TGG + chr2_4:54130495-54130514 None:intergenic 40.0%
TTCGTATGATCTGCGATTTC+TGG - chr2_4:54130517-54130536 Msa0335060:intron 40.0%
TCGTATGATCTGCGATTTCT+GGG - chr2_4:54130518-54130537 Msa0335060:intron 40.0%
AAAAGGGGTTTATGTAAGCC+TGG + chr2_4:54130571-54130590 None:intergenic 40.0%
! GCTTACATAAACCCCTTTTC+TGG - chr2_4:54130572-54130591 Msa0335060:intron 40.0%
AACGACCCATTTCCTATTAG+TGG - chr2_4:54130610-54130629 Msa0335060:intron 40.0%
GTGGGCCTATCTGAAAAAAT+AGG - chr2_4:54130661-54130680 Msa0335060:intron 40.0%
AAACACAAGTTACTCATGGG+CGG - chr2_4:54130774-54130793 Msa0335060:intron 40.0%
ATGAGGTAGAAGCAGAGAAA+AGG + chr2_4:54130800-54130819 None:intergenic 40.0%
! TTTTCTCTGCTTCTACCTCA+TGG - chr2_4:54130799-54130818 Msa0335060:intron 40.0%
TATGCAGAATCATAAAGGGG+AGG + chr2_4:54131129-54131148 None:intergenic 40.0%
CGACATAGTGCTTATATGGT+TGG - chr2_4:54131209-54131228 Msa0335060:intron 40.0%
CTTATGATCAAAGACGTGCA+TGG - chr2_4:54131308-54131327 Msa0335060:intron 40.0%
AGTGTCATGTTGTCAGACAT+CGG + chr2_4:54131347-54131366 None:intergenic 40.0%
CAACATGACACTGTCACATA+TGG - chr2_4:54131355-54131374 Msa0335060:intron 40.0%
TAATCACCAGAAGAACAGGA+GGG + chr2_4:54131580-54131599 None:intergenic 40.0%
ATAATCACCAGAAGAACAGG+AGG + chr2_4:54131581-54131600 None:intergenic 40.0%
GTGATAATCACCAGAAGAAC+AGG + chr2_4:54131584-54131603 None:intergenic 40.0%
AGATAGTTTCCCAGCCATAT+TGG - chr2_4:54131628-54131647 Msa0335060:intron 40.0%
CAATAACAGACCAATATGGC+TGG + chr2_4:54131641-54131660 None:intergenic 40.0%
! ACTGTACATTTTCCTACACC+CGG + chr2_4:54131744-54131763 None:intergenic 40.0%
!!! ATGGCCTTTGAAGCATTTTG+GGG + chr2_4:54131825-54131844 None:intergenic 40.0%
!!! CAATGGCCTTTGAAGCATTT+TGG + chr2_4:54131827-54131846 None:intergenic 40.0%
TCAAATGGGTCATCAATTGC+GGG + chr2_4:54131882-54131901 None:intergenic 40.0%
CTGTGTCAAGTATTATGGGA+CGG - chr2_4:54132089-54132108 Msa0335060:intron 40.0%
!!! TTTTTTTTTTTTGGGGGGGG+GGG + chr2_4:54132161-54132180 None:intergenic 40.0%
GATACGGCTACTAGTGTTAA+AGG + chr2_4:54132221-54132240 None:intergenic 40.0%
!! CCCACTTGTTTTCACAATCA+AGG - chr2_4:54132240-54132259 Msa0335060:intron 40.0%
! TCTAGTACTGAGATGTGTTC+TGG - chr2_4:54132310-54132329 Msa0335060:intron 40.0%
! CTAGTACTGAGATGTGTTCT+GGG - chr2_4:54132311-54132330 Msa0335060:intron 40.0%
! GGAAGAAAGAGATTAGTTGC+TGG + chr2_4:54132665-54132684 None:intergenic 40.0%
AGTAATATGGGAGAACCTTG+GGG + chr2_4:54132695-54132714 None:intergenic 40.0%
CTAGTAATATGGGAGAACCT+TGG + chr2_4:54132697-54132716 None:intergenic 40.0%
CAAACGTGAATCGCAGAAAA+TGG + chr2_4:54133138-54133157 None:intergenic 40.0%
TGGCAAAGATAGTAGGATGT+AGG - chr2_4:54133192-54133211 Msa0335060:intron 40.0%
ATCTAGTTAGTGTATCAGGG+AGG + chr2_4:54133281-54133300 None:intergenic 40.0%
GGGACAGTTAATTAGATGGT+AGG - chr2_4:54133344-54133363 Msa0335060:intron 40.0%
GTTGTAGTAGGGGAAATACT+TGG + chr2_4:54133534-54133553 None:intergenic 40.0%
TATGAGGATGCAAGGATAGA+GGG + chr2_4:54133603-54133622 None:intergenic 40.0%
ATATGAGGATGCAAGGATAG+AGG + chr2_4:54133604-54133623 None:intergenic 40.0%
ATTGGAGTAGTAAGAGCAGT+TGG + chr2_4:54133652-54133671 None:intergenic 40.0%
CTCAATATATTCTGCGGTAG+TGG - chr2_4:54133789-54133808 Msa0335060:intron 40.0%
ATTTCTCCGCCCATTGTTAA+CGG + chr2_4:54133958-54133977 None:intergenic 40.0%
GAACTGTGTGCTTCTGTAAT+AGG - chr2_4:54134006-54134025 Msa0335060:intron 40.0%
TACTTGTCTATGATGTCACC+AGG - chr2_4:54134075-54134094 Msa0335060:intron 40.0%
TCACACAGACCCTAATATTG+TGG - chr2_4:54134145-54134164 Msa0335060:intron 40.0%
! ATGGAAAGTCTTTTGCAGAG+AGG - chr2_4:54134225-54134244 Msa0335060:intron 40.0%
! TGGAAAGTCTTTTGCAGAGA+GGG - chr2_4:54134226-54134245 Msa0335060:intron 40.0%
TTATTGTCTGTCCTACAGAC+GGG + chr2_4:54134391-54134410 None:intergenic 40.0%
CATCTTGTAAATGTCTGCAC+TGG - chr2_4:54134501-54134520 Msa0335060:CDS 40.0%
AGGACTACCCAAATTCATAC+AGG - chr2_4:54134641-54134660 Msa0335060:five_prime_UTR 40.0%
! GTTATTTGCTGCACCATTAC+TGG + chr2_4:54134705-54134724 None:intergenic 40.0%
AATCCAGGTTGCTCCATTTC+CGG - chr2_4:54128562-54128581 Msa0335060:three_prime_UTR 45.0%
AGGAGGGAATTTCGGTGAAT+TGG + chr2_4:54128635-54128654 None:intergenic 45.0%
! GTAACGGGAGGAAAGAATGA+AGG + chr2_4:54128655-54128674 None:intergenic 45.0%
TACACTTCTTCAACCATGGC+TGG - chr2_4:54128710-54128729 Msa0335060:three_prime_UTR 45.0%
!! CTAGTTCTAATCGGCGATTC+AGG - chr2_4:54128770-54128789 Msa0335060:three_prime_UTR 45.0%
CGTGATTCACATACTACTGC+AGG + chr2_4:54129333-54129352 None:intergenic 45.0%
ATGCAAGAAATCCTGACTGC+AGG - chr2_4:54129468-54129487 Msa0335060:intron 45.0%
TGCAAGAAATCCTGACTGCA+GGG - chr2_4:54129469-54129488 Msa0335060:intron 45.0%
TAGTGGCTATAGTGGCACTA+TGG - chr2_4:54129702-54129721 Msa0335060:intron 45.0%
CACTATGGCGGTATGGTTTA+GGG - chr2_4:54129717-54129736 Msa0335060:intron 45.0%
CAACAAATGTACGGCATCTG+TGG + chr2_4:54129814-54129833 None:intergenic 45.0%
TCACGTATGTACATGGACCA+TGG + chr2_4:54129850-54129869 None:intergenic 45.0%
!! TCATTTCAGGAGGTTGGTGA+TGG + chr2_4:54130004-54130023 None:intergenic 45.0%
GAAATATGTTCAGGGCCAGT+TGG + chr2_4:54130115-54130134 None:intergenic 45.0%
GTGTGTACTCTTAATCGCTG+AGG + chr2_4:54130229-54130248 None:intergenic 45.0%
TTGGGCACACTCACATGAAA+TGG + chr2_4:54130391-54130410 None:intergenic 45.0%
! AGACTTGCTCCACACACAAT+CGG - chr2_4:54130441-54130460 Msa0335060:intron 45.0%
! TATGATCTGCGATTTCTGGG+TGG - chr2_4:54130521-54130540 Msa0335060:intron 45.0%
! ATGATCTGCGATTTCTGGGT+GGG - chr2_4:54130522-54130541 Msa0335060:intron 45.0%
!! TAAACCCCTTTTCTGGTACG+CGG - chr2_4:54130579-54130598 Msa0335060:intron 45.0%
AACTACCTTGCGTGTAACCT+TGG - chr2_4:54131162-54131181 Msa0335060:intron 45.0%
TATTAGGCCTGAGTTCACCA+AGG + chr2_4:54131182-54131201 None:intergenic 45.0%
TGTCAGACATCGGTACATGT+CGG + chr2_4:54131337-54131356 None:intergenic 45.0%
AATCACCAGAAGAACAGGAG+GGG + chr2_4:54131579-54131598 None:intergenic 45.0%
TTGGGACAGGATTGGAACTA+GGG + chr2_4:54131704-54131723 None:intergenic 45.0%
ATTGGGACAGGATTGGAACT+AGG + chr2_4:54131705-54131724 None:intergenic 45.0%
!!! TTTGAAGCATTTTGGGGTGG+GGG + chr2_4:54131819-54131838 None:intergenic 45.0%
!!! CTTTGAAGCATTTTGGGGTG+GGG + chr2_4:54131820-54131839 None:intergenic 45.0%
!!! CCTTTGAAGCATTTTGGGGT+GGG + chr2_4:54131821-54131840 None:intergenic 45.0%
! GTGCATTGGCATGCGTAATA+AGG - chr2_4:54132062-54132081 Msa0335060:intron 45.0%
TGTCAAGTATTATGGGACGG+AGG - chr2_4:54132092-54132111 Msa0335060:intron 45.0%
GTCAAGTATTATGGGACGGA+GGG - chr2_4:54132093-54132112 Msa0335060:intron 45.0%
!!! TTTTTTTTTTTGGGGGGGGG+GGG + chr2_4:54132160-54132179 None:intergenic 45.0%
AAAGAGCTTCCTTGTCCTCA+AGG - chr2_4:54132181-54132200 Msa0335060:intron 45.0%
TTCTTTCCACCTTGAGGACA+AGG + chr2_4:54132193-54132212 None:intergenic 45.0%
TGTCCTCAAGGTGGAAAGAA+AGG - chr2_4:54132193-54132212 Msa0335060:intron 45.0%
TGCCACTACTTTCTTCAGCA+AGG - chr2_4:54132393-54132412 Msa0335060:intron 45.0%
CTCCTTGCTGAAGAAAGTAG+TGG + chr2_4:54132398-54132417 None:intergenic 45.0%
! GTGGACTGAGTTTCTCATTG+TGG - chr2_4:54132514-54132533 Msa0335060:intron 45.0%
TGGAGTCACAGATTGGGTAT+GGG + chr2_4:54132572-54132591 None:intergenic 45.0%
TTGGAGTCACAGATTGGGTA+TGG + chr2_4:54132573-54132592 None:intergenic 45.0%
GGGAATTGGAGTCACAGATT+GGG + chr2_4:54132578-54132597 None:intergenic 45.0%
AGGGAATTGGAGTCACAGAT+TGG + chr2_4:54132579-54132598 None:intergenic 45.0%
! CCATAGCTCTATGGCGTATT+GGG - chr2_4:54133010-54133029 Msa0335060:intron 45.0%
GCGATACGCGATTTAGTACA+AGG - chr2_4:54133057-54133076 Msa0335060:intron 45.0%
ACGTGAATCGCAGAAAATGG+TGG + chr2_4:54133135-54133154 None:intergenic 45.0%
ATGAGGATGCAAGGATAGAG+GGG + chr2_4:54133602-54133621 None:intergenic 45.0%
!!! GTTCTAGTTTTGAAGCAGCC+TGG - chr2_4:54133811-54133830 Msa0335060:intron 45.0%
GTTATGCCGTTAACAATGGG+CGG - chr2_4:54133949-54133968 Msa0335060:intron 45.0%
ACACAGTTCAAGTGAGTAGC+AGG + chr2_4:54133995-54134014 None:intergenic 45.0%
AGTAAGCACTAGTGATGGCA+CGG + chr2_4:54134034-54134053 None:intergenic 45.0%
TCGGTAGTAAGCACTAGTGA+TGG + chr2_4:54134039-54134058 None:intergenic 45.0%
ATCACTAGTGCTTACTACCG+AGG - chr2_4:54134038-54134057 Msa0335060:intron 45.0%
CTTCATGGAGACTTCTGCTT+TGG - chr2_4:54134259-54134278 Msa0335060:intron 45.0%
CTGCTTTCTTGCTCACTATG+CGG + chr2_4:54134334-54134353 None:intergenic 45.0%
GAGCAAGAAAGCAGTTGAAG+CGG - chr2_4:54134340-54134359 Msa0335060:intron 45.0%
AGCAAGAAAGCAGTTGAAGC+GGG - chr2_4:54134341-54134360 Msa0335060:intron 45.0%
ATTTGGATGCTGCTCGAACT+AGG - chr2_4:54134442-54134461 Msa0335060:CDS 45.0%
GGTGCTTCATGTATGTCAGT+TGG - chr2_4:54134463-54134482 Msa0335060:CDS 45.0%
!!! TTTTTTATTTATTTGAATTT+TGG - chr2_4:54128981-54129000 Msa0335060:CDS 5.0%
!! CATAAAAATAAATAAAAAAA+AGG + chr2_4:54129970-54129989 None:intergenic 5.0%
CGAGGCTTACAGGTCGAAAA+AGG - chr2_4:54128507-54128526 Msa0335060:three_prime_UTR 50.0%
TACACGATTCCGCACAATCC+AGG - chr2_4:54128547-54128566 Msa0335060:three_prime_UTR 50.0%
ATGGAGCAACCTGGATTGTG+CGG + chr2_4:54128559-54128578 None:intergenic 50.0%
CGGGAGGAAAGAATGAAGGA+GGG + chr2_4:54128651-54128670 None:intergenic 50.0%
ACGGGAGGAAAGAATGAAGG+AGG + chr2_4:54128652-54128671 None:intergenic 50.0%
CTAATCGGCGATTCAGGTGT+TGG - chr2_4:54128776-54128795 Msa0335060:three_prime_UTR 50.0%
! GCTCAGATTTGGGATACTGC+TGG - chr2_4:54128914-54128933 Msa0335060:CDS 50.0%
! GATTTGGGATACTGCTGGTC+AGG - chr2_4:54128919-54128938 Msa0335060:CDS 50.0%
ATCGGGATACGAAAGGAGCT+TGG + chr2_4:54129141-54129160 None:intergenic 50.0%
TGGCTATAGTGGCACTATGG+CGG - chr2_4:54129705-54129724 Msa0335060:intron 50.0%
ATAGTGGCACTATGGCGGTA+TGG - chr2_4:54129710-54129729 Msa0335060:intron 50.0%
GCACTATGGCGGTATGGTTT+AGG - chr2_4:54129716-54129735 Msa0335060:intron 50.0%
GTAAAGCTGACATTCCTCGG+TGG + chr2_4:54129758-54129777 None:intergenic 50.0%
!! TCAGGAGGTTGGTGATGGTT+AGG + chr2_4:54129999-54130018 None:intergenic 50.0%
!! TTGATTTGGGGTTGTGCCCA+TGG - chr2_4:54130417-54130436 Msa0335060:intron 50.0%
GTGTGGAGCAAGTCTTCCAT+GGG + chr2_4:54130436-54130455 None:intergenic 50.0%
TGTGTGGAGCAAGTCTTCCA+TGG + chr2_4:54130437-54130456 None:intergenic 50.0%
! GACTTGCTCCACACACAATC+GGG - chr2_4:54130442-54130461 Msa0335060:intron 50.0%
! CTCCACACACAATCGGGTTT+TGG - chr2_4:54130448-54130467 Msa0335060:intron 50.0%
CACCAAAACCCGATTGTGTG+TGG + chr2_4:54130453-54130472 None:intergenic 50.0%
TTATGTAAGCCTGGCGTGTG+CGG + chr2_4:54130562-54130581 None:intergenic 50.0%
!! AAACCCCTTTTCTGGTACGC+GGG - chr2_4:54130580-54130599 Msa0335060:intron 50.0%
TCAACCCGCGTACCAGAAAA+GGG + chr2_4:54130587-54130606 None:intergenic 50.0%
ACGAGATACATGTGAGGCAC+AGG + chr2_4:54130835-54130854 None:intergenic 50.0%
ACACGCACGAGATACATGTG+AGG + chr2_4:54130841-54130860 None:intergenic 50.0%
GTTCACCAAGGTTACACGCA+AGG + chr2_4:54131170-54131189 None:intergenic 50.0%
CGTGTAACCTTGGTGAACTC+AGG - chr2_4:54131172-54131191 Msa0335060:intron 50.0%
TTATATGGTTGGCGTGCTGC+TGG - chr2_4:54131220-54131239 Msa0335060:intron 50.0%
GTCAGACATCGGTACATGTC+GGG + chr2_4:54131336-54131355 None:intergenic 50.0%
AATTCCCCCTCCTGTTCTTC+TGG - chr2_4:54131571-54131590 Msa0335060:intron 50.0%
ATCACCAGAAGAACAGGAGG+GGG + chr2_4:54131578-54131597 None:intergenic 50.0%
GTTCCAATCCTGTCCCAATG+CGG - chr2_4:54131706-54131725 Msa0335060:intron 50.0%
AATCCTGTCCCAATGCGGAT+GGG - chr2_4:54131711-54131730 Msa0335060:intron 50.0%
CCCACCCCAAAATGCTTCAA+AGG - chr2_4:54131818-54131837 Msa0335060:intron 50.0%
!!! GCCTTTGAAGCATTTTGGGG+TGG + chr2_4:54131822-54131841 None:intergenic 50.0%
ATGGGTCATCAATTGCGGGA+CGG + chr2_4:54131878-54131897 None:intergenic 50.0%
!!! TTTTTTTTTTGGGGGGGGGG+GGG + chr2_4:54132159-54132178 None:intergenic 50.0%
ATCAAGGAGGTTCAACCAGC+TGG - chr2_4:54132256-54132275 Msa0335060:intron 50.0%
! CTGAGATGTGTTCTGGGCTT+TGG - chr2_4:54132317-54132336 Msa0335060:intron 50.0%
TTTCTTCCTGTCTTGCCCCA+AGG - chr2_4:54132677-54132696 Msa0335060:intron 50.0%
! ATAGTGGCGCCATAGCTCTA+TGG - chr2_4:54133001-54133020 Msa0335060:intron 50.0%
! GCCATAGCTCTATGGCGTAT+TGG - chr2_4:54133009-54133028 Msa0335060:intron 50.0%
CCCAATACGCCATAGAGCTA+TGG + chr2_4:54133013-54133032 None:intergenic 50.0%
! CAGTGGCTCTGTTGTAGTAG+GGG + chr2_4:54133544-54133563 None:intergenic 50.0%
! GCAGTGGCTCTGTTGTAGTA+GGG + chr2_4:54133545-54133564 None:intergenic 50.0%
! AGCAGTGGCTCTGTTGTAGT+AGG + chr2_4:54133546-54133565 None:intergenic 50.0%
TGAGGATGCAAGGATAGAGG+GGG + chr2_4:54133601-54133620 None:intergenic 50.0%
TCGCAACTCTTTCAACCACC+TGG + chr2_4:54134123-54134142 None:intergenic 50.0%
TTGGGACAGCAACAAGGTGT+CGG + chr2_4:54134199-54134218 None:intergenic 50.0%
CTTCTGTTGGGACAGCAACA+AGG + chr2_4:54134205-54134224 None:intergenic 50.0%
GTTGCTGTCCCAACAGAAGA+TGG - chr2_4:54134206-54134225 Msa0335060:intron 50.0%
GAGGGAGTCTCTCTACTTCA+TGG - chr2_4:54134244-54134263 Msa0335060:intron 50.0%
AAAGCAGTTGAAGCGGGTGA+AGG - chr2_4:54134347-54134366 Msa0335060:intron 50.0%
GTTCCGGAAATGGAGCAACC+TGG + chr2_4:54128568-54128587 None:intergenic 55.0%
GTCTGCTCTGTATCCAGCCA+TGG + chr2_4:54128726-54128745 None:intergenic 55.0%
GGGATACTGCTGGTCAGGAA+AGG - chr2_4:54128924-54128943 Msa0335060:CDS 55.0%
ACATCGGTGGGTGTCCGATT+AGG - chr2_4:54129369-54129388 Msa0335060:intron 55.0%
AATCCTGACTGCAGGGAAGC+CGG - chr2_4:54129476-54129495 Msa0335060:intron 55.0%
!! CGGGTTTTGGTGAAATCGGG+TGG - chr2_4:54130461-54130480 Msa0335060:intron 55.0%
TCGGGTGGAATCAATCCCAC+TGG - chr2_4:54130476-54130495 Msa0335060:intron 55.0%
CAACCCGCGTACCAGAAAAG+GGG + chr2_4:54130586-54130605 None:intergenic 55.0%
CTCAACCCGCGTACCAGAAA+AGG + chr2_4:54130588-54130607 None:intergenic 55.0%
ACAGGCAGAGAAAGGCCATG+AGG + chr2_4:54130817-54130836 None:intergenic 55.0%
TGTGAGGCACAGGCAGAGAA+AGG + chr2_4:54130825-54130844 None:intergenic 55.0%
CATCCGCATTGGGACAGGAT+TGG + chr2_4:54131712-54131731 None:intergenic 55.0%
CAATCCTGTCCCAATGCGGA+TGG - chr2_4:54131710-54131729 Msa0335060:intron 55.0%
GTGTTGCACCCATCCGCATT+GGG + chr2_4:54131722-54131741 None:intergenic 55.0%
AATGCGGATGGGTGCAACAC+CGG - chr2_4:54131722-54131741 Msa0335060:intron 55.0%
GTCATCAATTGCGGGACGGA+GGG + chr2_4:54131874-54131893 None:intergenic 55.0%
!!! TTTTTTTTTGGGGGGGGGGG+GGG + chr2_4:54132158-54132177 None:intergenic 55.0%
GAGCTTCCTTGTCCTCAAGG+TGG - chr2_4:54132184-54132203 Msa0335060:intron 55.0%
GCGCCTTTCTTTCCACCTTG+AGG + chr2_4:54132199-54132218 None:intergenic 55.0%
! GATGTGTTCTGGGCTTTGGC+TGG - chr2_4:54132321-54132340 Msa0335060:intron 55.0%
GCTTACTACCGAGGAGCTGT+CGG - chr2_4:54134047-54134066 Msa0335060:intron 55.0%
!! GTAAAGCACCGACAGCTCCT+CGG + chr2_4:54134058-54134077 None:intergenic 55.0%
GTTCTCAAATGTGGCACGCC+TGG + chr2_4:54134096-54134115 None:intergenic 55.0%
CCTGGCAGCGTTCTCAAATG+TGG + chr2_4:54134105-54134124 None:intergenic 55.0%
CCACATTTGAGAACGCTGCC+AGG - chr2_4:54134102-54134121 Msa0335060:intron 55.0%
CATTTGAGAACGCTGCCAGG+TGG - chr2_4:54134105-54134124 Msa0335060:intron 55.0%
CTGGGTGGGAGTTGCGACAA+CGG - chr2_4:54130536-54130555 Msa0335060:intron 60.0%
! GGTGTTGCACCCATCCGCAT+TGG + chr2_4:54131723-54131742 None:intergenic 60.0%
ATGCGGATGGGTGCAACACC+GGG - chr2_4:54131723-54131742 Msa0335060:intron 60.0%
ATGGGTGCAACACCGGGTGT+AGG - chr2_4:54131729-54131748 Msa0335060:intron 60.0%
TTGCGGGACGGAGGGAGTAA+GGG + chr2_4:54131866-54131885 None:intergenic 60.0%
ATTGCGGGACGGAGGGAGTA+AGG + chr2_4:54131867-54131886 None:intergenic 60.0%
GGTCATCAATTGCGGGACGG+AGG + chr2_4:54131875-54131894 None:intergenic 60.0%
!!! TTTTTTTTGGGGGGGGGGGG+GGG + chr2_4:54132157-54132176 None:intergenic 60.0%
GGAGAACCTTGGGGCAAGAC+AGG + chr2_4:54132686-54132705 None:intergenic 60.0%
GCAGTTGAAGCGGGTGAAGG+TGG - chr2_4:54134350-54134369 Msa0335060:intron 60.0%
TCCTCGTCAGTCCCGTCTGT+AGG - chr2_4:54134377-54134396 Msa0335060:intron 60.0%
TCCTACAGACGGGACTGACG+AGG + chr2_4:54134381-54134400 None:intergenic 60.0%
GATCCGGCTTCCCTGCAGTC+AGG + chr2_4:54129482-54129501 None:intergenic 65.0%
GCACCCATCCGCATTGGGAC+AGG + chr2_4:54131717-54131736 None:intergenic 65.0%
!!! TTTTTTTGGGGGGGGGGGGG+GGG + chr2_4:54132156-54132175 None:intergenic 65.0%
!!! TTTTTTGGGGGGGGGGGGGG+GGG + chr2_4:54132155-54132174 None:intergenic 70.0%
CGACAACGGCCGCACACGCC+AGG - chr2_4:54130550-54130569 Msa0335060:intron 75.0%
!! TTTTTGGGGGGGGGGGGGGG+GGG + chr2_4:54132154-54132173 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 54128507 54134836 54128507 ID=Msa0335060;Name=Msa0335060
chr2_4 mRNA 54128507 54134836 54128507 ID=Msa0335060-mRNA-1;Parent=Msa0335060;Name=Msa0335060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=218|1|1|1|1|1|2|373|218
chr2_4 exon 54128507 54129315 54128507 ID=Msa0335060-mRNA-1:exon:16320;Parent=Msa0335060-mRNA-1
chr2_4 exon 54134398 54134836 54134398 ID=Msa0335060-mRNA-1:exon:16319;Parent=Msa0335060-mRNA-1
chr2_4 five_prime_UTR 54134619 54134836 54134619 ID=Msa0335060-mRNA-1:five_prime_utr;Parent=Msa0335060-mRNA-1
chr2_4 CDS 54134398 54134618 54134398 ID=Msa0335060-mRNA-1:cds;Parent=Msa0335060-mRNA-1
chr2_4 CDS 54128880 54129315 54128880 ID=Msa0335060-mRNA-1:cds;Parent=Msa0335060-mRNA-1
chr2_4 three_prime_UTR 54128507 54128879 54128507 ID=Msa0335060-mRNA-1:three_prime_utr;Parent=Msa0335060-mRNA-1
Gene Sequence

>Msa0335060

ATGGCTGGATACAGAGCAGACGATGAATACGATTACCTTTTCAAACTAGTTCTAATCGGCGATTCAGGTGTTGGTAAATCCAACTTGCTTTCTAGATTCACTAGAAACGAGTTCAATTTGGAATCTAAATCCACTATTGGTGTTGAATTCGCTACCAAGAGTTTGACTGTTGATGCTAAAGTCATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAAAGGTACCGTGCCATCACTAGTGCTTACTACCGAGGAGCTGTCGGTGCTTTACTTGTCTATGATGTCACCAGGCGTGCCACATTTGAGAACGCTGCCAGGTGGTTGAAAGAGTTGCGAGATCACACAGACCCTAATATTGTGGTCATGCTTATTGGAAATAAGTCTGATCTCCGACACCTTGTTGCTGTCCCAACAGAAGATGGAAAGTCTTTTGCAGAGAGGGAGTCTCTCTACTTCATGGAGACTTCTGCTTTGGAAGCAACCAATGTAGAAAATGCATTCACTGAGGTTCTTTCTCAGATATACCGCATAGTGAGCAAGAAAGCAGTTGAAGCGGGTGAAGGTGGCAGTTCCTCGTCAGTCCCGTCTGTAGGACAGACAATAAACGTGAAAGAGGATTCTTCGGTTTTGAAGAGATTTGGATGCTGCTCGAACTAG
Protein sequence

>Msa0335060

MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLTVDAKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKKAVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN*