Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457620 | XP_003593350.2 | 64.407 | 354 | 39 | 5 | 1 | 301 | 1 | 320 | 2.08e-127 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457620 | G7IFC3 | 64.407 | 354 | 39 | 5 | 1 | 301 | 1 | 320 | 9.91e-128 | 376 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1457620 | 0.809362 | 1.964277e-50 | -8.615850e-47 |
| Msa0010490 | Msa1457620 | 0.810305 | 1.231249e-50 | -8.615850e-47 |
| Msa0010500 | Msa1457620 | 0.804236 | 2.380020e-49 | -8.615850e-47 |
| Msa0020410 | Msa1457620 | 0.811123 | 8.194093e-51 | -8.615850e-47 |
| Msa0032470 | Msa1457620 | 0.838058 | 3.603297e-57 | -8.615850e-47 |
| Msa0043980 | Msa1457620 | 0.823049 | 1.707470e-53 | -8.615850e-47 |
| Msa0072420 | Msa1457620 | 0.874767 | 5.220113e-68 | -8.615850e-47 |
| Msa0083280 | Msa1457620 | 0.827597 | 1.433101e-54 | -8.615850e-47 |
| Msa0086420 | Msa1457620 | 0.808637 | 2.808658e-50 | -8.615850e-47 |
| Msa0090550 | Msa1457620 | 0.809387 | 1.939986e-50 | -8.615850e-47 |
| Msa0106850 | Msa1457620 | 0.821973 | 3.036281e-53 | -8.615850e-47 |
| Msa0115790 | Msa1457620 | 0.844030 | 9.728664e-59 | -8.615850e-47 |
| Msa1346840 | Msa1457620 | 0.839252 | 1.771130e-57 | -8.615850e-47 |
| Msa1357620 | Msa1457620 | 0.824859 | 6.424761e-54 | -8.615850e-47 |
| Msa1364210 | Msa1457620 | 0.814540 | 1.462677e-51 | -8.615850e-47 |
| Msa1368710 | Msa1457620 | 0.816825 | 4.529899e-52 | -8.615850e-47 |
| Msa1392980 | Msa1457620 | 0.843625 | 1.249237e-58 | -8.615850e-47 |
| Msa1401990 | Msa1457620 | 0.854651 | 1.067912e-61 | -8.615850e-47 |
| Msa1419690 | Msa1457620 | 0.843946 | 1.024882e-58 | -8.615850e-47 |
| Msa1434420 | Msa1457620 | -0.837912 | 3.928897e-57 | -8.615850e-47 |
| Msa1437730 | Msa1457620 | 0.808782 | 2.614432e-50 | -8.615850e-47 |
| Msa1453880 | Msa1457620 | 0.814733 | 1.325820e-51 | -8.615850e-47 |
| Msa1457620 | Msa1462290 | 0.803958 | 2.718973e-49 | -8.615850e-47 |
| Msa0604290 | Msa1457620 | 0.841345 | 5.027464e-58 | -8.615850e-47 |
| Msa0624060 | Msa1457620 | 0.800345 | 1.505742e-48 | -8.615850e-47 |
| Msa0665280 | Msa1457620 | 0.804055 | 2.595621e-49 | -8.615850e-47 |
| Msa0666270 | Msa1457620 | 0.813039 | 3.132141e-51 | -8.615850e-47 |
| Msa0673160 | Msa1457620 | 0.801249 | 9.843711e-49 | -8.615850e-47 |
| Msa0676130 | Msa1457620 | 0.808284 | 3.340030e-50 | -8.615850e-47 |
| Msa0689320 | Msa1457620 | 0.803620 | 3.195194e-49 | -8.615850e-47 |
| Msa0709400 | Msa1457620 | 0.814136 | 1.796790e-51 | -8.615850e-47 |
| Msa0719180 | Msa1457620 | 0.801859 | 7.379164e-49 | -8.615850e-47 |
| Msa0741440 | Msa1457620 | 0.848411 | 6.237425e-60 | -8.615850e-47 |
| Msa0769970 | Msa1457620 | 0.832400 | 9.658473e-56 | -8.615850e-47 |
| Msa0802980 | Msa1457620 | 0.806872 | 6.659923e-50 | -8.615850e-47 |
| Msa0822500 | Msa1457620 | 0.816930 | 4.288877e-52 | -8.615850e-47 |
| Msa0827280 | Msa1457620 | 0.801573 | 8.449962e-49 | -8.615850e-47 |
| Msa0829220 | Msa1457620 | 0.820784 | 5.711135e-53 | -8.615850e-47 |
| Msa0123560 | Msa1457620 | 0.843655 | 1.226201e-58 | -8.615850e-47 |
| Msa0137730 | Msa1457620 | 0.800743 | 1.249185e-48 | -8.615850e-47 |
| Msa0148080 | Msa1457620 | 0.839617 | 1.423604e-57 | -8.615850e-47 |
| Msa0167980 | Msa1457620 | 0.828657 | 7.958301e-55 | -8.615850e-47 |
| Msa0175540 | Msa1457620 | 0.816286 | 5.981074e-52 | -8.615850e-47 |
| Msa0189320 | Msa1457620 | 0.810078 | 1.378511e-50 | -8.615850e-47 |
| Msa0190590 | Msa1457620 | 0.867043 | 1.830242e-65 | -8.615850e-47 |
| Msa0191070 | Msa1457620 | 0.804540 | 2.057088e-49 | -8.615850e-47 |
| Msa0194950 | Msa1457620 | -0.804358 | 2.244183e-49 | -8.615850e-47 |
| Msa0204960 | Msa1457620 | 0.816427 | 5.562594e-52 | -8.615850e-47 |
| Msa0209350 | Msa1457620 | 0.806505 | 7.964061e-50 | -8.615850e-47 |
| Msa0232790 | Msa1457620 | 0.885139 | 1.051949e-71 | -8.615850e-47 |
| Msa1238840 | Msa1457620 | 0.827035 | 1.953495e-54 | -8.615850e-47 |
| Msa1244600 | Msa1457620 | 0.812894 | 3.368857e-51 | -8.615850e-47 |
| Msa1254730 | Msa1457620 | 0.804424 | 2.174494e-49 | -8.615850e-47 |
| Msa1271130 | Msa1457620 | 0.804486 | 2.111282e-49 | -8.615850e-47 |
| Msa1280340 | Msa1457620 | 0.807104 | 5.949699e-50 | -8.615850e-47 |
| Msa1305660 | Msa1457620 | 0.847373 | 1.205157e-59 | -8.615850e-47 |
| Msa1307180 | Msa1457620 | 0.827924 | 1.195588e-54 | -8.615850e-47 |
| Msa1316360 | Msa1457620 | 0.832655 | 8.352860e-56 | -8.615850e-47 |
| Msa1331320 | Msa1457620 | 0.829660 | 4.546745e-55 | -8.615850e-47 |
| Msa1331350 | Msa1457620 | 0.811319 | 7.428203e-51 | -8.615850e-47 |
| Msa1336290 | Msa1457620 | 0.810849 | 9.394068e-51 | -8.615850e-47 |
| Msa1336560 | Msa1457620 | 0.800117 | 1.675461e-48 | -8.615850e-47 |
| Msa1341060 | Msa1457620 | 0.846007 | 2.845174e-59 | -8.615850e-47 |
| Msa0385500 | Msa1457620 | 0.849718 | 2.701565e-60 | -8.615850e-47 |
| Msa0395750 | Msa1457620 | 0.802225 | 6.206419e-49 | -8.615850e-47 |
| Msa0398670 | Msa1457620 | 0.879916 | 8.429827e-70 | -8.615850e-47 |
| Msa0404630 | Msa1457620 | 0.829660 | 4.546745e-55 | -8.615850e-47 |
| Msa0431980 | Msa1457620 | 0.812254 | 4.650434e-51 | -8.615850e-47 |
| Msa0432500 | Msa1457620 | 0.808709 | 2.711194e-50 | -8.615850e-47 |
| Msa0439980 | Msa1457620 | 0.825905 | 3.631956e-54 | -8.615850e-47 |
| Msa0440990 | Msa1457620 | 0.809445 | 1.885238e-50 | -8.615850e-47 |
| Msa0454360 | Msa1457620 | 0.830053 | 3.647321e-55 | -8.615850e-47 |
| Msa0477080 | Msa1457620 | 0.801185 | 1.014616e-48 | -8.615850e-47 |
| Msa1034150 | Msa1457620 | 0.807025 | 6.183537e-50 | -8.615850e-47 |
| Msa1036300 | Msa1457620 | 0.819094 | 1.390927e-52 | -8.615850e-47 |
| Msa1037520 | Msa1457620 | 0.803763 | 2.985108e-49 | -8.615850e-47 |
| Msa1043250 | Msa1457620 | -0.803623 | 3.191352e-49 | -8.615850e-47 |
| Msa1058750 | Msa1457620 | 0.811686 | 6.183763e-51 | -8.615850e-47 |
| Msa1059470 | Msa1457620 | 0.818763 | 1.654215e-52 | -8.615850e-47 |
| Msa1089320 | Msa1457620 | 0.814110 | 1.819940e-51 | -8.615850e-47 |
| Msa0240920 | Msa1457620 | 0.833996 | 3.868865e-56 | -8.615850e-47 |
| Msa0243090 | Msa1457620 | 0.819889 | 9.163070e-53 | -8.615850e-47 |
| Msa0257490 | Msa1457620 | 0.821912 | 3.137866e-53 | -8.615850e-47 |
| Msa0261090 | Msa1457620 | 0.823939 | 1.057085e-53 | -8.615850e-47 |
| Msa0271510 | Msa1457620 | 0.836291 | 1.020047e-56 | -8.615850e-47 |
| Msa0272300 | Msa1457620 | 0.939392 | 1.372227e-99 | -8.615850e-47 |
| Msa0296790 | Msa1457620 | 0.802134 | 6.478858e-49 | -8.615850e-47 |
| Msa0305410 | Msa1457620 | 0.856127 | 3.968337e-62 | -8.615850e-47 |
| Msa0315440 | Msa1457620 | -0.810589 | 1.069253e-50 | -8.615850e-47 |
| Msa0316390 | Msa1457620 | 0.811599 | 6.458775e-51 | -8.615850e-47 |
| Msa0317940 | Msa1457620 | 0.827930 | 1.191424e-54 | -8.615850e-47 |
| Msa0318680 | Msa1457620 | 0.837827 | 4.130036e-57 | -8.615850e-47 |
| Msa0341480 | Msa1457620 | 0.805293 | 1.431627e-49 | -8.615850e-47 |
| Msa1117240 | Msa1457620 | 0.807517 | 4.862783e-50 | -8.615850e-47 |
| Msa1124960 | Msa1457620 | 0.801162 | 1.025509e-48 | -8.615850e-47 |
| Msa1158640 | Msa1457620 | -0.843169 | 1.653321e-58 | -8.615850e-47 |
| Msa1159840 | Msa1457620 | 0.816231 | 6.151002e-52 | -8.615850e-47 |
| Msa1176720 | Msa1457620 | 0.825561 | 4.382564e-54 | -8.615850e-47 |
| Msa1207310 | Msa1457620 | 0.816949 | 4.247191e-52 | -8.615850e-47 |
| Msa1212950 | Msa1457620 | 0.811731 | 6.044905e-51 | -8.615850e-47 |
| Msa0520850 | Msa1457620 | 0.837567 | 4.818000e-57 | -8.615850e-47 |
| Msa0521270 | Msa1457620 | 0.809168 | 2.161663e-50 | -8.615850e-47 |
| Msa0527540 | Msa1457620 | 0.848951 | 4.418098e-60 | -8.615850e-47 |
| Msa0530560 | Msa1457620 | 0.814258 | 1.688577e-51 | -8.615850e-47 |
| Msa0531530 | Msa1457620 | 0.826966 | 2.029782e-54 | -8.615850e-47 |
| Msa0531690 | Msa1457620 | 0.809505 | 1.830874e-50 | -8.615850e-47 |
| Msa0542260 | Msa1457620 | 0.820716 | 5.922394e-53 | -8.615850e-47 |
| Msa0542290 | Msa1457620 | 0.810268 | 1.254553e-50 | -8.615850e-47 |
| Msa0542560 | Msa1457620 | 0.832478 | 9.237631e-56 | -8.615850e-47 |
| Msa0544840 | Msa1457620 | 0.841461 | 4.686446e-58 | -8.615850e-47 |
| Msa0547160 | Msa1457620 | 0.826629 | 2.442105e-54 | -8.615850e-47 |
| Msa0548240 | Msa1457620 | 0.851359 | 9.343926e-61 | -8.615850e-47 |
| Msa0549450 | Msa1457620 | 0.849810 | 2.546414e-60 | -8.615850e-47 |
| Msa0574930 | Msa1457620 | 0.801168 | 1.022472e-48 | -8.615850e-47 |
| Msa0588260 | Msa1457620 | 0.824248 | 8.946895e-54 | -8.615850e-47 |
| Msa0849040 | Msa1457620 | 0.813615 | 2.339558e-51 | -8.615850e-47 |
| Msa0934850 | Msa1457620 | 0.817451 | 3.274717e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457620 | MtrunA17_Chr2g0280241 | 63.265 | 343 | 39 | 5 | 12 | 301 | 1 | 309 | 1.20e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457620 | AT4G33690.1 | 37.551 | 245 | 111 | 5 | 1 | 237 | 1 | 211 | 2.27e-36 | 130 |
Find 95 sgRNAs with CRISPR-Local
Find 405 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATAATGCATTAGGATTT+AGG | 0.198295 | tig0039058:-12846 | None:intergenic |
| ATTTCAGAATCTCAAAATTA+TGG | 0.212826 | tig0039058:+14037 | Msa1457620:three_prime_UTR |
| GAGGAGATACATGAAGAAAA+AGG | 0.225832 | tig0039058:+13637 | Msa1457620:CDS |
| GAGCTAGATAAACGGGTTTC+AGG | 0.242657 | tig0039058:+11913 | Msa1457620:CDS |
| AGGGAACGCCGTGCTATTTA+TGG | 0.264533 | tig0039058:+13571 | Msa1457620:CDS |
| AAACAATGGCACAACTTTCT+TGG | 0.272012 | tig0039058:-12869 | None:intergenic |
| ACTACTCTAGTCGTCTTTCT+TGG | 0.286303 | tig0039058:+11034 | Msa1457620:CDS |
| TGCAGCGATGGAGGCCTCTT+TGG | 0.303890 | tig0039058:-13595 | None:intergenic |
| CTTATGCTTAGATTTATCTT+TGG | 0.322415 | tig0039058:-13779 | None:intergenic |
| GTCTGAAAAGGAAGGTGTTC+TGG | 0.328605 | tig0039058:+9188 | Msa1457620:CDS |
| TTCTTGGTTGATAATGCATT+AGG | 0.356673 | tig0039058:-12853 | None:intergenic |
| GCAGTGAGGAAACGTGAATT+TGG | 0.368822 | tig0039058:-9243 | None:intergenic |
| TTTGGCCGACTCCTTACATT+AGG | 0.370196 | tig0039058:-9225 | None:intergenic |
| GATTAGCTGCTATGCTTATG+AGG | 0.374781 | tig0039058:+9142 | Msa1457620:CDS |
| GAAGGCTCTTCATCAGGATT+AGG | 0.382558 | tig0039058:-13532 | None:intergenic |
| AAATCAAACATGTTATTAGT+TGG | 0.397700 | tig0039058:+14079 | Msa1457620:three_prime_UTR |
| CTAAAATCCGGACTAGTAGA+AGG | 0.420316 | tig0039058:-13550 | None:intergenic |
| AGAATTGGAGCTAGATAAAC+GGG | 0.421423 | tig0039058:+11906 | Msa1457620:CDS |
| CCAATATGATTAGATGGATC+TGG | 0.428255 | tig0039058:+9107 | Msa1457620:intron |
| AAGAATTGGAGCTAGATAAA+CGG | 0.432861 | tig0039058:+11905 | Msa1457620:CDS |
| AAGCAAGGCAGAGGTGCTAT+TGG | 0.433440 | tig0039058:+13475 | Msa1457620:CDS |
| AACCTGCTGAAACAGTTGAT+TGG | 0.436079 | tig0039058:+13890 | Msa1457620:three_prime_UTR |
| CTAGTAGAAGGCTCTTCATC+AGG | 0.441144 | tig0039058:-13538 | None:intergenic |
| AATTTATAAATATAAAAGTC+TGG | 0.458437 | tig0039058:+8041 | None:intergenic |
| ACCTGCTGAAACAGTTGATT+GGG | 0.463866 | tig0039058:+13891 | Msa1457620:three_prime_UTR |
| TCCCAATCAACTGTTTCAGC+AGG | 0.464221 | tig0039058:-13892 | None:intergenic |
| GCGAGCGCGAGAGAAAGAAT+TGG | 0.475950 | tig0039058:+11891 | Msa1457620:CDS |
| ATAAAAGAAGTGATGACAAA+AGG | 0.493587 | tig0039058:+11947 | Msa1457620:CDS |
| AGAAAGACGACTAGAGTAGT+AGG | 0.494860 | tig0039058:-11031 | None:intergenic |
| GCTTACTTTGTCTCTGTCTA+CGG | 0.498356 | tig0039058:-8118 | None:intergenic |
| TCATAAAAGCCACTCGGACA+AGG | 0.500159 | tig0039058:+13735 | Msa1457620:CDS |
| GTCTACGGTGGCACCGTCGA+AGG | 0.506413 | tig0039058:-8103 | None:intergenic |
| GATGGTGCAGGAGGTAGTAC+AGG | 0.506437 | tig0039058:-10971 | None:intergenic |
| TGAAGAGCCTTCTACTAGTC+CGG | 0.506801 | tig0039058:+13543 | Msa1457620:CDS |
| ATCTTCAAAAGCCTAATGTA+AGG | 0.513211 | tig0039058:+9214 | Msa1457620:CDS |
| TTCCTCACTGCTACCGTACG+TGG | 0.514157 | tig0039058:+9255 | Msa1457620:CDS |
| GAATACAAGCATACTGAAGA+AGG | 0.516676 | tig0039058:+12060 | Msa1457620:CDS |
| GATTCATATGATTGCAGCGA+TGG | 0.524208 | tig0039058:-13607 | None:intergenic |
| GGCTCTTCATCAGGATTAGG+AGG | 0.525929 | tig0039058:-13529 | None:intergenic |
| GGTGGCACCGTCGAAGGGAT+CGG | 0.528236 | tig0039058:-8097 | None:intergenic |
| TGAGCATGAAGCAGAGGCAC+TGG | 0.529655 | tig0039058:-12028 | None:intergenic |
| TGCAGGAAGAAGCAAGGCAG+AGG | 0.534691 | tig0039058:+13466 | Msa1457620:intron |
| CATAAAAGCCACTCGGACAA+GGG | 0.539820 | tig0039058:+13736 | Msa1457620:CDS |
| AGAAGCGCAGAAAGACATGC+CGG | 0.545272 | tig0039058:+11991 | Msa1457620:CDS |
| GCACGGCGTTCCCTAAAATC+CGG | 0.547528 | tig0039058:-13562 | None:intergenic |
| GGTCCAGTCTCATCCATCCT+TGG | 0.549173 | tig0039058:-13499 | None:intergenic |
| AAGATCATAGCAGATGGTGC+AGG | 0.549734 | tig0039058:-10983 | None:intergenic |
| GAAGCGCAGAAAGACATGCC+GGG | 0.550828 | tig0039058:+11992 | Msa1457620:CDS |
| AAGTGATGACAAAAGGCATA+GGG | 0.553113 | tig0039058:+11954 | Msa1457620:CDS |
| CTTCATCAGGATTAGGAGGA+AGG | 0.554907 | tig0039058:-13525 | None:intergenic |
| ACAAGTAAACATCGACGCTA+AGG | 0.556891 | tig0039058:+13823 | Msa1457620:CDS |
| ATTGCGGCGGCAGTCTGAAA+AGG | 0.556915 | tig0039058:+9176 | Msa1457620:CDS |
| TGAGGATTAATATCTCTAGC+AGG | 0.559611 | tig0039058:-13970 | None:intergenic |
| ACTAGAGTAGTAGGAGGATG+TGG | 0.565898 | tig0039058:-11022 | None:intergenic |
| ATAGCTATAGTATAGTATGC+AGG | 0.566379 | tig0039058:+13992 | Msa1457620:three_prime_UTR |
| AGGTGCTATTGGTCCAAGGA+TGG | 0.566624 | tig0039058:+13486 | Msa1457620:CDS |
| GAAGTGATGACAAAAGGCAT+AGG | 0.568455 | tig0039058:+11953 | Msa1457620:CDS |
| CATACTATACTATAGCTATG+AGG | 0.570244 | tig0039058:-13988 | None:intergenic |
| AGGGGCATTCTAAGAAGCAC+AGG | 0.574142 | tig0039058:+13755 | Msa1457620:CDS |
| ACCTTGTTGTACCCCACGTA+CGG | 0.579109 | tig0039058:-9268 | None:intergenic |
| TCTACGGTGGCACCGTCGAA+GGG | 0.579463 | tig0039058:-8102 | None:intergenic |
| GGTCCAAGGATGGATGAGAC+TGG | 0.581999 | tig0039058:+13496 | Msa1457620:CDS |
| TCATATGATTGCAGCGATGG+AGG | 0.583552 | tig0039058:-13604 | None:intergenic |
| TCAGGATTAGGAGGAAGGTA+AGG | 0.589024 | tig0039058:-13520 | None:intergenic |
| ATTAGCTGCTATGCTTATGA+GGG | 0.595844 | tig0039058:+9143 | Msa1457620:CDS |
| ATCATAGCAGATGGTGCAGG+AGG | 0.597670 | tig0039058:-10980 | None:intergenic |
| TCCTCACTGCTACCGTACGT+GGG | 0.598730 | tig0039058:+9256 | Msa1457620:CDS |
| TGAGGGAAGCAGCTGAATTG+CGG | 0.599933 | tig0039058:+9160 | Msa1457620:CDS |
| TTTAGTTGAGCATGAAGCAG+AGG | 0.601778 | tig0039058:-12034 | None:intergenic |
| TAGAATGCCCCTTGTCCGAG+TGG | 0.603867 | tig0039058:-13744 | None:intergenic |
| CGGCGGCAGTCTGAAAAGGA+AGG | 0.613557 | tig0039058:+9180 | Msa1457620:CDS |
| AAGACGACTAGAGTAGTAGG+AGG | 0.614940 | tig0039058:-11028 | None:intergenic |
| GAGAACACCGATCCCTTCGA+CGG | 0.618905 | tig0039058:+8090 | Msa1457620:five_prime_UTR |
| ATCATATGAATCTTCTGAGG+AGG | 0.623892 | tig0039058:+13618 | Msa1457620:CDS |
| GCAGAGGTGCTATTGGTCCA+AGG | 0.624173 | tig0039058:+13482 | Msa1457620:CDS |
| GTCTCATCATAAAAGCCACT+CGG | 0.625919 | tig0039058:+13729 | Msa1457620:CDS |
| GTCATATGAATCTTCTGAGG+AGG | 0.629029 | tig0039058:+13672 | Msa1457620:CDS |
| GGGAAGCAGCTGAATTGCGG+CGG | 0.633649 | tig0039058:+9163 | Msa1457620:CDS |
| ATGAAGAAGATCATAGCAGA+TGG | 0.634582 | tig0039058:-10989 | None:intergenic |
| AAAAGCCTAATGTAAGGAGT+CGG | 0.635616 | tig0039058:+9220 | Msa1457620:CDS |
| GCAATCATATGAATCTTCTG+AGG | 0.635767 | tig0039058:+13615 | Msa1457620:CDS |
| AAGCGCAGAAAGACATGCCG+GGG | 0.637078 | tig0039058:+11993 | Msa1457620:CDS |
| GTAATCTGATATATTCTCAG+AGG | 0.637157 | tig0039058:+13853 | Msa1457620:three_prime_UTR |
| AGTAGGAGGATGTGGAACAG+AGG | 0.640350 | tig0039058:-11014 | None:intergenic |
| ATAAAAGCCACTCGGACAAG+GGG | 0.643411 | tig0039058:+13737 | Msa1457620:CDS |
| ACCGTACGTGGGGTACAACA+AGG | 0.646023 | tig0039058:+9267 | Msa1457620:CDS |
| CTGTCGAAGTAAATGAAATG+TGG | 0.648233 | tig0039058:+11869 | Msa1457620:CDS |
| TACTTTGTCTCTGTCTACGG+TGG | 0.650096 | tig0039058:-8115 | None:intergenic |
| TCTTTGGACCATAAATAGCA+CGG | 0.652427 | tig0039058:-13579 | None:intergenic |
| AGGAGCTACATGAAGAAAAG+CGG | 0.660754 | tig0039058:+13692 | Msa1457620:CDS |
| GTGCTATTTATGGTCCAAAG+AGG | 0.666760 | tig0039058:+13581 | Msa1457620:CDS |
| GCAGTCATATGAATCTTCTG+AGG | 0.668869 | tig0039058:+13669 | Msa1457620:CDS |
| TGCAGGAGGTAGTACAGGTG+TGG | 0.687634 | tig0039058:-10966 | None:intergenic |
| CCTCACTGCTACCGTACGTG+GGG | 0.692099 | tig0039058:+9257 | Msa1457620:CDS |
| CCCCACGTACGGTAGCAGTG+AGG | 0.779657 | tig0039058:-9257 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAGTAAAAATAATTAAA+AGG | - | tig0039058:11102-11121 | None:intergenic | 10.0% |
| !!! | AGAATAGATTTTATATAATT+AGG | + | tig0039058:11479-11498 | Msa1457620:intron | 10.0% |
| !!! | TTTTATCATTATATGAGAAA+TGG | + | tig0039058:9452-9471 | Msa1457620:intron | 15.0% |
| !!! | TTTTATATGATGTTTCAATA+TGG | + | tig0039058:10480-10499 | Msa1457620:intron | 15.0% |
| !!! | TAGATTTTATATAATTAGGA+TGG | + | tig0039058:11483-11502 | Msa1457620:intron | 15.0% |
| !! | CATTAATTAGATAAACTATT+AGG | - | tig0039058:11809-11828 | None:intergenic | 15.0% |
| !! | TGTATATATATATAATGAGT+TGG | - | tig0039058:12462-12481 | None:intergenic | 15.0% |
| !! | AACAATTCAATAATGATATT+GGG | - | tig0039058:12539-12558 | None:intergenic | 15.0% |
| !! | TAACAATTCAATAATGATAT+TGG | - | tig0039058:12540-12559 | None:intergenic | 15.0% |
| !!! | ATTACTATTTTGCAAATTTA+AGG | + | tig0039058:13186-13205 | Msa1457620:intron | 15.0% |
| !!! | TTTTCTCTTTGATTTGATTT+TGG | + | tig0039058:8416-8435 | Msa1457620:intron | 20.0% |
| !!! | ATACAATTTGGAATTGAAAA+AGG | + | tig0039058:8817-8836 | Msa1457620:intron | 20.0% |
| !! | AAATTGAGAAACAAAATCTT+CGG | - | tig0039058:9027-9046 | None:intergenic | 20.0% |
| !! | ATAAAACTTTCAAAGAAGAA+GGG | - | tig0039058:9438-9457 | None:intergenic | 20.0% |
| !!! | AAGAAGTATCAAATGTTTTT+TGG | + | tig0039058:10366-10385 | Msa1457620:intron | 20.0% |
| !!! | TAATTTTCAAATATAGCTGA+AGG | + | tig0039058:10424-10443 | Msa1457620:intron | 20.0% |
| !!! | AATTTTCAAATATAGCTGAA+GGG | + | tig0039058:10425-10444 | Msa1457620:intron | 20.0% |
| !!! | TTCCTTTGTTTAGAAAAAAT+AGG | + | tig0039058:10869-10888 | Msa1457620:intron | 20.0% |
| !!! | TCCTTTGTTTAGAAAAAATA+GGG | + | tig0039058:10870-10889 | Msa1457620:intron | 20.0% |
| !! | TTAAAAGGTCAATAAAATTG+AGG | - | tig0039058:11087-11106 | None:intergenic | 20.0% |
| !!! | TAATGAAACTGAATTTCTTT+TGG | + | tig0039058:11824-11843 | Msa1457620:intron | 20.0% |
| !! | ACAATTCAATAATGATATTG+GGG | - | tig0039058:12538-12557 | None:intergenic | 20.0% |
| !! | AGTTAAAAAAGAAGAAGATT+TGG | + | tig0039058:12613-12632 | Msa1457620:intron | 20.0% |
| !!! | AATTGGTAGTATTTAATTTC+AGG | - | tig0039058:12795-12814 | None:intergenic | 20.0% |
| !! | TAAATATCACTATATTAGCA+AGG | - | tig0039058:12934-12953 | None:intergenic | 20.0% |
| !!! | ATAATTTTGAGATTCTGAAA+TGG | - | tig0039058:14038-14057 | None:intergenic | 20.0% |
| !! | ATTTCAGAATCTCAAAATTA+TGG | + | tig0039058:14037-14056 | Msa1457620:three_prime_UTR | 20.0% |
| !! | AAATCAAACATGTTATTAGT+TGG | + | tig0039058:14079-14098 | Msa1457620:three_prime_UTR | 20.0% |
| !! | TTTTTCTTCCCTGATTTAAT+GGG | + | tig0039058:8181-8200 | Msa1457620:intron | 25.0% |
| ! | TTGCAGATAGAAAAAATTAG+AGG | - | tig0039058:8241-8260 | None:intergenic | 25.0% |
| ! | TTTCTGTAGCAAAAGATAAA+AGG | + | tig0039058:8567-8586 | Msa1457620:intron | 25.0% |
| ! | TATTATAGCCTAAATGTCTT+TGG | + | tig0039058:8787-8806 | Msa1457620:intron | 25.0% |
| ! | ATTATAGCCTAAATGTCTTT+GGG | + | tig0039058:8788-8807 | Msa1457620:intron | 25.0% |
| !!! | TGAAAAAGGTATTTCTTTGT+AGG | + | tig0039058:8831-8850 | Msa1457620:intron | 25.0% |
| !!! | GAAAAAGGTATTTCTTTGTA+GGG | + | tig0039058:8832-8851 | Msa1457620:intron | 25.0% |
| !! | TTTATCTGTTATGCTTTGTT+TGG | - | tig0039058:8865-8884 | None:intergenic | 25.0% |
| ! | TATGAATAGAAAAGACAGAA+TGG | + | tig0039058:8924-8943 | Msa1457620:intron | 25.0% |
| !!! | ATTTTTTGCATTAAGAACTC+TGG | + | tig0039058:8987-9006 | Msa1457620:intron | 25.0% |
| !! | ATTAAGAACTCTGGAAAATT+TGG | + | tig0039058:8996-9015 | Msa1457620:intron | 25.0% |
| !! | AGTGTTCCTTAAATTGTTTT+TGG | + | tig0039058:9084-9103 | Msa1457620:intron | 25.0% |
| ! | TATTGGCCAAAAACAATTTA+AGG | - | tig0039058:9093-9112 | None:intergenic | 25.0% |
| !! | CTATATTGTCCTATGTTTTA+TGG | + | tig0039058:9336-9355 | Msa1457620:intron | 25.0% |
| ! | GATAAAACTTTCAAAGAAGA+AGG | - | tig0039058:9439-9458 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGCATAAGCCA+TGG | - | tig0039058:9565-9584 | None:intergenic | 25.0% |
| !! | GATCATTATTCACTTCTTTT+TGG | + | tig0039058:9662-9681 | Msa1457620:intron | 25.0% |
| !! | CAAGCAAATTGTCATTTAAT+AGG | + | tig0039058:10394-10413 | Msa1457620:intron | 25.0% |
| ! | AAATTGAGGGAAAAATATTC+GGG | - | tig0039058:10817-10836 | None:intergenic | 25.0% |
| ! | CAAATTGAGGGAAAAATATT+CGG | - | tig0039058:10818-10837 | None:intergenic | 25.0% |
| !!! | ACCCTATTTTTTCTAAACAA+AGG | - | tig0039058:10874-10893 | None:intergenic | 25.0% |
| ! | TTTGTGTTCACATTTCTTTA+TGG | + | tig0039058:11205-11224 | Msa1457620:intron | 25.0% |
| ! | TTACGAAAACTTCTCTTATT+TGG | + | tig0039058:11527-11546 | Msa1457620:intron | 25.0% |
| !! | ACTTCTCTTATTTGGTTATA+TGG | + | tig0039058:11535-11554 | Msa1457620:intron | 25.0% |
| !!! | TATTTTTTTTTTGTGGTGTC+CGG | - | tig0039058:11661-11680 | None:intergenic | 25.0% |
| ! | ACACCACAAAAAAAAAATAG+TGG | + | tig0039058:11662-11681 | Msa1457620:intron | 25.0% |
| !!! | TTGCCACTATTTTTTTTTTG+TGG | - | tig0039058:11668-11687 | None:intergenic | 25.0% |
| ! | ACAAAAAAAAAATAGTGGCA+AGG | + | tig0039058:11667-11686 | Msa1457620:intron | 25.0% |
| ! | CAAAAAAAAAATAGTGGCAA+GGG | + | tig0039058:11668-11687 | Msa1457620:intron | 25.0% |
| ! | ATAAAAGAAGTGATGACAAA+AGG | + | tig0039058:11947-11966 | Msa1457620:CDS | 25.0% |
| !! | CTTAATTTTCAACTCAAGTT+CGG | - | tig0039058:12379-12398 | None:intergenic | 25.0% |
| ! | TATATATAGTTCGACTCATT+TGG | + | tig0039058:12428-12447 | Msa1457620:intron | 25.0% |
| !!! | TTGATAATGCATTAGGATTT+AGG | - | tig0039058:12849-12868 | None:intergenic | 25.0% |
| !!! | TTTGCTATTGCGAAAATTTA+GGG | - | tig0039058:13122-13141 | None:intergenic | 25.0% |
| !!! | TTTTGCTATTGCGAAAATTT+AGG | - | tig0039058:13123-13142 | None:intergenic | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | - | tig0039058:13263-13282 | None:intergenic | 25.0% |
| !!! | TAAGCAAAACTTCACTTTTT+AGG | - | tig0039058:13362-13381 | None:intergenic | 25.0% |
| !! | GTTTTGCTTATAATAGTGAT+CGG | + | tig0039058:13372-13391 | Msa1457620:intron | 25.0% |
| !!! | CTTTAATTTCTTTAAAGCTG+AGG | + | tig0039058:13429-13448 | Msa1457620:intron | 25.0% |
| ! | CTTATGCTTAGATTTATCTT+TGG | - | tig0039058:13782-13801 | None:intergenic | 25.0% |
| ! | TAAGCATAAGAAAAAGAGAA+GGG | + | tig0039058:13792-13811 | Msa1457620:CDS | 25.0% |
| GGGAAGAAAAAAAAAATCGT+CGG | - | tig0039058:8150-8169 | None:intergenic | 30.0% | |
| GAAGAAAAAGATTCGGAATT+GGG | - | tig0039058:8170-8189 | None:intergenic | 30.0% | |
| AATCAGGGAAGAAAAAGATT+CGG | - | tig0039058:8177-8196 | None:intergenic | 30.0% | |
| ! | CTTTTTCTTCCCTGATTTAA+TGG | + | tig0039058:8180-8199 | Msa1457620:intron | 30.0% |
| GAACTCAATCAAAGCTATAA+AGG | - | tig0039058:8316-8335 | None:intergenic | 30.0% | |
| CTTTGATTGAGTTCGTATAA+TGG | + | tig0039058:8322-8341 | Msa1457620:intron | 30.0% | |
| TCGTATAATGGTAGAATTCT+AGG | + | tig0039058:8334-8353 | Msa1457620:intron | 30.0% | |
| CGTATAATGGTAGAATTCTA+GGG | + | tig0039058:8335-8354 | Msa1457620:intron | 30.0% | |
| !!! | CTTTGATTTGATTTTGGTGT+TGG | + | tig0039058:8422-8441 | Msa1457620:intron | 30.0% |
| TTTCTGTGTAATAATCGTCA+TGG | + | tig0039058:8493-8512 | Msa1457620:intron | 30.0% | |
| TTGGAAGAACTTACTAAAAC+AGG | - | tig0039058:8687-8706 | None:intergenic | 30.0% | |
| AAAGTAGCACACAAGTATTA+GGG | - | tig0039058:8766-8785 | None:intergenic | 30.0% | |
| AAAAGTAGCACACAAGTATT+AGG | - | tig0039058:8767-8786 | None:intergenic | 30.0% | |
| ! | TTTGGGATTTGGATACAATT+TGG | + | tig0039058:8805-8824 | Msa1457620:intron | 30.0% |
| ACAAAGCATAACAGATAAAG+CGG | + | tig0039058:8866-8885 | Msa1457620:intron | 30.0% | |
| TATTCATACTAGTGGAAAGA+CGG | - | tig0039058:8912-8931 | None:intergenic | 30.0% | |
| ! | GTCTTTTCTATTCATACTAG+TGG | - | tig0039058:8920-8939 | None:intergenic | 30.0% |
| TAGTAGTAGTAATAACCAGT+AGG | + | tig0039058:8953-8972 | Msa1457620:intron | 30.0% | |
| AAATCATTCAAAGAACCTAC+TGG | - | tig0039058:8971-8990 | None:intergenic | 30.0% | |
| ! | TTTTGGCCAATATGATTAGA+TGG | + | tig0039058:9101-9120 | Msa1457620:intron | 30.0% |
| ATCTTCAAAAGCCTAATGTA+AGG | + | tig0039058:9214-9233 | Msa1457620:CDS | 30.0% | |
| ! | CTATCTAAAATTAGCGAGTA+AGG | - | tig0039058:9298-9317 | None:intergenic | 30.0% |
| ! | CGCTAATTTTAGATAGAGTT+TGG | + | tig0039058:9302-9321 | Msa1457620:intron | 30.0% |
| GTTTATCATTGTATGGAAAC+TGG | + | tig0039058:9376-9395 | Msa1457620:intron | 30.0% | |
| CAGTTCTTATAGTATATCCA+TGG | + | tig0039058:9545-9564 | Msa1457620:intron | 30.0% | |
| TGTATTAGAGAGAGATTCAT+AGG | + | tig0039058:9601-9620 | Msa1457620:intron | 30.0% | |
| !!! | TGGTTTTGTGCAAAATATCA+AGG | + | tig0039058:9682-9701 | Msa1457620:intron | 30.0% |
| !! | GGTTTTGTGCAAAATATCAA+GGG | + | tig0039058:9683-9702 | Msa1457620:intron | 30.0% |
| ! | AATGTGGGTTGCAAATTATA+TGG | + | tig0039058:9895-9914 | Msa1457620:intron | 30.0% |
| ! | TGAGGTTACAATCATTGATT+AGG | + | tig0039058:9923-9942 | Msa1457620:intron | 30.0% |
| ! | ATCATTGATTAGGAAATCTG+TGG | + | tig0039058:9933-9952 | Msa1457620:intron | 30.0% |
| ATGCATATGTACCATAAACT+AGG | + | tig0039058:9986-10005 | Msa1457620:intron | 30.0% | |
| TGTAACAACTTCCTAGTTTA+TGG | - | tig0039058:10000-10019 | None:intergenic | 30.0% | |
| TGACCCAAATATTTGTACAA+GGG | - | tig0039058:10088-10107 | None:intergenic | 30.0% | |
| ATGACCCAAATATTTGTACA+AGG | - | tig0039058:10089-10108 | None:intergenic | 30.0% | |
| ! | TTCTCTAGTTTGATTCACAA+GGG | + | tig0039058:10130-10149 | Msa1457620:intron | 30.0% |
| GACATAGAATAACAATGGTT+TGG | - | tig0039058:10287-10306 | None:intergenic | 30.0% | |
| TTTAGTGACAATTCATGCTT+TGG | - | tig0039058:10563-10582 | None:intergenic | 30.0% | |
| AAAGCATGAATTGTCACTAA+AGG | + | tig0039058:10562-10581 | Msa1457620:intron | 30.0% | |
| CGTATTAAATCATGAAGTTG+AGG | + | tig0039058:10777-10796 | Msa1457620:intron | 30.0% | |
| ! | CGAATATTTTTCCCTCAATT+TGG | + | tig0039058:10816-10835 | Msa1457620:intron | 30.0% |
| ACCAAAAACATCCAAATTGA+GGG | - | tig0039058:10830-10849 | None:intergenic | 30.0% | |
| TACCAAAAACATCCAAATTG+AGG | - | tig0039058:10831-10850 | None:intergenic | 30.0% | |
| !!! | TGGATGTTTTTGGTATACAA+AGG | + | tig0039058:10836-10855 | Msa1457620:intron | 30.0% |
| !!! | GGATGTTTTTGGTATACAAA+GGG | + | tig0039058:10837-10856 | Msa1457620:intron | 30.0% |
| !!! | GATGTTTTTGGTATACAAAG+GGG | + | tig0039058:10838-10857 | Msa1457620:intron | 30.0% |
| TTCAATAAACGAGCAAGTTT+AGG | - | tig0039058:11232-11251 | None:intergenic | 30.0% | |
| ATAATTAGGATGGAGAGAAA+AGG | + | tig0039058:11493-11512 | Msa1457620:intron | 30.0% | |
| TAATTAGGATGGAGAGAAAA+GGG | + | tig0039058:11494-11513 | Msa1457620:intron | 30.0% | |
| !! | ACTTTTCTATTTAGCTCAGT+TGG | + | tig0039058:11593-11612 | Msa1457620:intron | 30.0% |
| GACAATGCATAATATATGCA+AGG | + | tig0039058:11620-11639 | Msa1457620:intron | 30.0% | |
| !!! | ATTTTTTTTTTGTGGTGTCC+GGG | - | tig0039058:11660-11679 | None:intergenic | 30.0% |
| AAGAATTGGAGCTAGATAAA+CGG | + | tig0039058:11905-11924 | Msa1457620:CDS | 30.0% | |
| TTTCAGTCCTTGATACTATA+AGG | + | tig0039058:12233-12252 | Msa1457620:intron | 30.0% | |
| TTCAGTCCTTGATACTATAA+GGG | + | tig0039058:12234-12253 | Msa1457620:intron | 30.0% | |
| GGTAATTAATTCGTTGAACT+TGG | + | tig0039058:12336-12355 | Msa1457620:intron | 30.0% | |
| CATGTATGTACCATCATAAA+AGG | + | tig0039058:12566-12585 | Msa1457620:intron | 30.0% | |
| GTAAAAGAAACAGTAGAATG+AGG | + | tig0039058:12722-12741 | Msa1457620:intron | 30.0% | |
| ! | TATTTAATTTCAGGCGAAGT+GGG | - | tig0039058:12786-12805 | None:intergenic | 30.0% |
| ! | TTTTATAACAACAGCGCAAT+TGG | - | tig0039058:12812-12831 | None:intergenic | 30.0% |
| !! | TTCTTGGTTGATAATGCATT+AGG | - | tig0039058:12856-12875 | None:intergenic | 30.0% |
| ! | TAGTATCGGGAAATAAACAA+TGG | - | tig0039058:12886-12905 | None:intergenic | 30.0% |
| TTGTTTATTTCCCGATACTA+TGG | + | tig0039058:12886-12905 | Msa1457620:intron | 30.0% | |
| TGTTTATTTCCCGATACTAT+GGG | + | tig0039058:12887-12906 | Msa1457620:intron | 30.0% | |
| CGACTCGATAAAATTTAGTT+CGG | - | tig0039058:13056-13075 | None:intergenic | 30.0% | |
| !! | AGGAAACTACATTTTAATGC+AGG | + | tig0039058:13449-13468 | Msa1457620:intron | 30.0% |
| AGGAGATACATGAAGAAAAA+GGG | + | tig0039058:13638-13657 | Msa1457620:CDS | 30.0% | |
| ATGAAGAAAAAGGGAAAAAG+AGG | + | tig0039058:13647-13666 | Msa1457620:CDS | 30.0% | |
| CTAAGCATAAGAAAAAGAGA+AGG | + | tig0039058:13791-13810 | Msa1457620:CDS | 30.0% | |
| GTAATCTGATATATTCTCAG+AGG | + | tig0039058:13853-13872 | Msa1457620:three_prime_UTR | 30.0% | |
| CATACTATACTATAGCTATG+AGG | - | tig0039058:13991-14010 | None:intergenic | 30.0% | |
| ATAGCTATAGTATAGTATGC+AGG | + | tig0039058:13992-14011 | Msa1457620:three_prime_UTR | 30.0% | |
| GGAAGAAAAAGATTCGGAAT+TGG | - | tig0039058:8171-8190 | None:intergenic | 35.0% | |
| GATGAAGACCCATTAAATCA+GGG | - | tig0039058:8192-8211 | None:intergenic | 35.0% | |
| TGATGAAGACCCATTAAATC+AGG | - | tig0039058:8193-8212 | None:intergenic | 35.0% | |
| ! | ATGTATGATTTTGCACTCTC+TGG | + | tig0039058:8367-8386 | Msa1457620:intron | 35.0% |
| ! | TGTATGATTTTGCACTCTCT+GGG | + | tig0039058:8368-8387 | Msa1457620:intron | 35.0% |
| !! | TTGGTGTTGGAAGATCAAAA+TGG | + | tig0039058:8435-8454 | Msa1457620:intron | 35.0% |
| ! | TGGTGTTGGAAGATCAAAAT+GGG | + | tig0039058:8436-8455 | Msa1457620:intron | 35.0% |
| !! | ATAAGTTTTGTGACACTGCT+TGG | - | tig0039058:8706-8725 | None:intergenic | 35.0% |
| TCCAAATCCCAAAGACATTT+AGG | - | tig0039058:8798-8817 | None:intergenic | 35.0% | |
| TAACAGATAAAGCGGATAGA+CGG | + | tig0039058:8874-8893 | Msa1457620:intron | 35.0% | |
| CCAGATCCATCTAATCATAT+TGG | - | tig0039058:9110-9129 | None:intergenic | 35.0% | |
| CCAATATGATTAGATGGATC+TGG | + | tig0039058:9107-9126 | Msa1457620:intron | 35.0% | |
| ATTAGCTGCTATGCTTATGA+GGG | + | tig0039058:9143-9162 | Msa1457620:CDS | 35.0% | |
| AAAAGCCTAATGTAAGGAGT+CGG | + | tig0039058:9220-9239 | Msa1457620:CDS | 35.0% | |
| AAAGCGCATCCATAAAACAT+AGG | - | tig0039058:9348-9367 | None:intergenic | 35.0% | |
| GACGAAGGTTTATCATTGTA+TGG | + | tig0039058:9369-9388 | Msa1457620:intron | 35.0% | |
| ! | GCATTGACCAAATAGATCAA+AGG | - | tig0039058:9501-9520 | None:intergenic | 35.0% |
| TGATCTATTTGGTCAATGCT+AGG | + | tig0039058:9502-9521 | Msa1457620:intron | 35.0% | |
| AGAGAGATTCATAGGACTTA+TGG | + | tig0039058:9609-9628 | Msa1457620:intron | 35.0% | |
| GAGAGATTCATAGGACTTAT+GGG | + | tig0039058:9610-9629 | Msa1457620:intron | 35.0% | |
| TGTGCAAAATATCAAGGGTT+TGG | + | tig0039058:9688-9707 | Msa1457620:intron | 35.0% | |
| ! | TGGTCTGAGTTAATTTGAAG+TGG | + | tig0039058:9708-9727 | Msa1457620:intron | 35.0% |
| TATGTACTGGATGTATACCT+AGG | - | tig0039058:9822-9841 | None:intergenic | 35.0% | |
| GTATACATCCAGTACATAAC+TGG | + | tig0039058:9824-9843 | Msa1457620:intron | 35.0% | |
| GTGCTTCCTTACAAAGTTAT+GGG | + | tig0039058:9857-9876 | Msa1457620:intron | 35.0% | |
| !! | GCAAATTATATGGACTAGTG+AGG | + | tig0039058:9905-9924 | Msa1457620:intron | 35.0% |
| TCCCCCTTGTACAAATATTT+GGG | + | tig0039058:10082-10101 | Msa1457620:intron | 35.0% | |
| ACCCAAATATTTGTACAAGG+GGG | - | tig0039058:10086-10105 | None:intergenic | 35.0% | |
| GACCCAAATATTTGTACAAG+GGG | - | tig0039058:10087-10106 | None:intergenic | 35.0% | |
| AAATATTTGGGTCATAGCAG+TGG | + | tig0039058:10094-10113 | Msa1457620:intron | 35.0% | |
| ! | CTTCTCTAGTTTGATTCACA+AGG | + | tig0039058:10129-10148 | Msa1457620:intron | 35.0% |
| ! | TCTCTAGTTTGATTCACAAG+GGG | + | tig0039058:10131-10150 | Msa1457620:intron | 35.0% |
| TCCCCTAATAGTGTTTAGTT+GGG | - | tig0039058:10263-10282 | None:intergenic | 35.0% | |
| CTTGGGACATAGAATAACAA+TGG | - | tig0039058:10292-10311 | None:intergenic | 35.0% | |
| ! | CATTGTTATTCTATGTCCCA+AGG | + | tig0039058:10290-10309 | Msa1457620:intron | 35.0% |
| GTTTCTTATGTTGTGACCTT+GGG | - | tig0039058:10309-10328 | None:intergenic | 35.0% | |
| TGTTTCTTATGTTGTGACCT+TGG | - | tig0039058:10310-10329 | None:intergenic | 35.0% | |
| TAGCAAGAAAGTGAAGCTTA+GGG | + | tig0039058:10612-10631 | Msa1457620:intron | 35.0% | |
| TACAGGATGATTGCAACTAT+GGG | - | tig0039058:10692-10711 | None:intergenic | 35.0% | |
| TAATACGATTTCAGCCACTA+TGG | - | tig0039058:10764-10783 | None:intergenic | 35.0% | |
| ! | TCCCTCAATTTGGATGTTTT+TGG | + | tig0039058:10826-10845 | Msa1457620:intron | 35.0% |
| ! | TTTTGTGGAGAACCAAACAA+GGG | - | tig0039058:10902-10921 | None:intergenic | 35.0% |
| ! | TTTTTGTGGAGAACCAAACA+AGG | - | tig0039058:10903-10922 | None:intergenic | 35.0% |
| ATGAAGAAGATCATAGCAGA+TGG | - | tig0039058:10992-11011 | None:intergenic | 35.0% | |
| AGGTCACATAGCTAATGAAA+GGG | - | tig0039058:11067-11086 | None:intergenic | 35.0% | |
| GTGAACACAAATGATTCAGA+GGG | - | tig0039058:11196-11215 | None:intergenic | 35.0% | |
| TGTGAACACAAATGATTCAG+AGG | - | tig0039058:11197-11216 | None:intergenic | 35.0% | |
| ! | TCTATTTAGCTCAGTTGGTA+AGG | + | tig0039058:11598-11617 | Msa1457620:intron | 35.0% |
| !!! | TTTTTTTTTTGTGGTGTCCG+GGG | - | tig0039058:11659-11678 | None:intergenic | 35.0% |
| AAAAGAAGTCTCATTCGACA+TGG | - | tig0039058:11742-11761 | None:intergenic | 35.0% | |
| CTGTCGAAGTAAATGAAATG+TGG | + | tig0039058:11869-11888 | Msa1457620:CDS | 35.0% | |
| AGAATTGGAGCTAGATAAAC+GGG | + | tig0039058:11906-11925 | Msa1457620:CDS | 35.0% | |
| ! | AAGTGATGACAAAAGGCATA+GGG | + | tig0039058:11954-11973 | Msa1457620:CDS | 35.0% |
| GAATACAAGCATACTGAAGA+AGG | + | tig0039058:12060-12079 | Msa1457620:CDS | 35.0% | |
| GCATACTGAAGAAGGTTTAA+AGG | + | tig0039058:12068-12087 | Msa1457620:intron | 35.0% | |
| TTTAAAGGATGAAGAGCTTG+AGG | + | tig0039058:12083-12102 | Msa1457620:intron | 35.0% | |
| TCATTACCCTCGTATACTTT+CGG | + | tig0039058:12125-12144 | Msa1457620:intron | 35.0% | |
| ! | AAACATCCGAAAGTATACGA+GGG | - | tig0039058:12134-12153 | None:intergenic | 35.0% |
| ! | AAAACATCCGAAAGTATACG+AGG | - | tig0039058:12135-12154 | None:intergenic | 35.0% |
| GTAAATTTGAGGGGCTTAAT+TGG | - | tig0039058:12264-12283 | None:intergenic | 35.0% | |
| !!! | GAACTATTTTCGAGTTGGTT+CGG | - | tig0039058:12304-12323 | None:intergenic | 35.0% |
| AAATAGTTCGAGACTCGATT+CGG | + | tig0039058:12315-12334 | Msa1457620:intron | 35.0% | |
| ! | CGACATCAAACCTTTTATGA+TGG | - | tig0039058:12579-12598 | None:intergenic | 35.0% |
| ! | GGATTGTAGTTCTTTTCTGA+TGG | + | tig0039058:12634-12653 | Msa1457620:intron | 35.0% |
| ! | GTATTTAATTTCAGGCGAAG+TGG | - | tig0039058:12787-12806 | None:intergenic | 35.0% |
| TGCGCTGTTGTTATAAAACA+AGG | + | tig0039058:12814-12833 | Msa1457620:intron | 35.0% | |
| AAACAATGGCACAACTTTCT+TGG | - | tig0039058:12872-12891 | None:intergenic | 35.0% | |
| GTTTATTTCCCGATACTATG+GGG | + | tig0039058:12888-12907 | Msa1457620:intron | 35.0% | |
| TTTATTTCCCGATACTATGG+GGG | + | tig0039058:12889-12908 | Msa1457620:intron | 35.0% | |
| ! | CAAGGTGTTTAGTTAACCTT+AGG | - | tig0039058:12916-12935 | None:intergenic | 35.0% |
| ! | ATTTAAGGAACTGAGTTGAC+TGG | + | tig0039058:13201-13220 | Msa1457620:intron | 35.0% |
| TTGCTTATAATAGTGATCGG+AGG | + | tig0039058:13375-13394 | Msa1457620:intron | 35.0% | |
| TGCTTATAATAGTGATCGGA+GGG | + | tig0039058:13376-13395 | Msa1457620:intron | 35.0% | |
| ! | TTTTAATGCAGGAAGAAGCA+AGG | + | tig0039058:13460-13479 | Msa1457620:intron | 35.0% |
| ! | TTCTACTAGTCCGGATTTTA+GGG | + | tig0039058:13552-13571 | Msa1457620:CDS | 35.0% |
| TCTTTGGACCATAAATAGCA+CGG | - | tig0039058:13582-13601 | None:intergenic | 35.0% | |
| GCAATCATATGAATCTTCTG+AGG | + | tig0039058:13615-13634 | Msa1457620:CDS | 35.0% | |
| ! | ATCATATGAATCTTCTGAGG+AGG | + | tig0039058:13618-13637 | Msa1457620:CDS | 35.0% |
| GAGGAGATACATGAAGAAAA+AGG | + | tig0039058:13637-13656 | Msa1457620:CDS | 35.0% | |
| TGAGGATTAATATCTCTAGC+AGG | - | tig0039058:13973-13992 | None:intergenic | 35.0% | |
| GCTTACTTTGTCTCTGTCTA+CGG | - | tig0039058:8121-8140 | None:intergenic | 40.0% | |
| !! | GCCTAAATGTCTTTGGGATT+TGG | + | tig0039058:8794-8813 | Msa1457620:intron | 40.0% |
| ! | GATTAGCTGCTATGCTTATG+AGG | + | tig0039058:9142-9161 | Msa1457620:CDS | 40.0% |
| GACCTGTCCTTTGATCTATT+TGG | + | tig0039058:9491-9510 | Msa1457620:intron | 40.0% | |
| GACCAAATAGATCAAAGGAC+AGG | - | tig0039058:9496-9515 | None:intergenic | 40.0% | |
| !! | ATATGACTTGTTTCCGTCCT+AGG | + | tig0039058:9802-9821 | Msa1457620:intron | 40.0% |
| TACTGGATGTATACCTAGGA+CGG | - | tig0039058:9818-9837 | None:intergenic | 40.0% | |
| CAAATGCACCAGTTATGTAC+TGG | - | tig0039058:9835-9854 | None:intergenic | 40.0% | |
| GTACATAACTGGTGCATTTG+AGG | + | tig0039058:9835-9854 | Msa1457620:intron | 40.0% | |
| GGTGCTTCCTTACAAAGTTA+TGG | + | tig0039058:9856-9875 | Msa1457620:intron | 40.0% | |
| CCAAGTCCCATAACTTTGTA+AGG | - | tig0039058:9866-9885 | None:intergenic | 40.0% | |
| CCTTACAAAGTTATGGGACT+TGG | + | tig0039058:9863-9882 | Msa1457620:intron | 40.0% | |
| ACTTGGATCCACTAGAATGT+GGG | + | tig0039058:9880-9899 | Msa1457620:intron | 40.0% | |
| ATTTGCAACCCACATTCTAG+TGG | - | tig0039058:9891-9910 | None:intergenic | 40.0% | |
| CTCCCCCTTGTACAAATATT+TGG | + | tig0039058:10081-10100 | Msa1457620:intron | 40.0% | |
| ! | CTCTAGTTTGATTCACAAGG+GGG | + | tig0039058:10132-10151 | Msa1457620:intron | 40.0% |
| CTTTCATTCCCCATCAATGT+TGG | - | tig0039058:10195-10214 | None:intergenic | 40.0% | |
| TTGATGGGGAATGAAAGTTC+AGG | + | tig0039058:10198-10217 | Msa1457620:intron | 40.0% | |
| TGATGGGGAATGAAAGTTCA+GGG | + | tig0039058:10199-10218 | Msa1457620:intron | 40.0% | |
| GAATGAAAGTTCAGGGAGAA+TGG | + | tig0039058:10206-10225 | Msa1457620:intron | 40.0% | |
| !! | AGTTCAGGGAGAATGGATTT+TGG | + | tig0039058:10213-10232 | Msa1457620:intron | 40.0% |
| TAGTGTTTAGTTGGGGGAAA+TGG | - | tig0039058:10255-10274 | None:intergenic | 40.0% | |
| TCCCCCAACTAAACACTATT+AGG | + | tig0039058:10257-10276 | Msa1457620:intron | 40.0% | |
| CCCTAATAGTGTTTAGTTGG+GGG | - | tig0039058:10261-10280 | None:intergenic | 40.0% | |
| CCCCCAACTAAACACTATTA+GGG | + | tig0039058:10258-10277 | Msa1457620:intron | 40.0% | |
| CCCCTAATAGTGTTTAGTTG+GGG | - | tig0039058:10262-10281 | None:intergenic | 40.0% | |
| CCCCAACTAAACACTATTAG+GGG | + | tig0039058:10259-10278 | Msa1457620:intron | 40.0% | |
| CTCCCCTAATAGTGTTTAGT+TGG | - | tig0039058:10264-10283 | None:intergenic | 40.0% | |
| TGCATGTACTCGAGTCATAT+TGG | - | tig0039058:10527-10546 | None:intergenic | 40.0% | |
| CTAGCAAGAAAGTGAAGCTT+AGG | + | tig0039058:10611-10630 | Msa1457620:intron | 40.0% | |
| AAGAAAGTGAAGCTTAGGGA+AGG | + | tig0039058:10616-10635 | Msa1457620:intron | 40.0% | |
| ACAGGATGATTGCAACTATG+GGG | - | tig0039058:10691-10710 | None:intergenic | 40.0% | |
| CTACAGGATGATTGCAACTA+TGG | - | tig0039058:10693-10712 | None:intergenic | 40.0% | |
| ! | AATAATGTGCTGCTCACTAC+AGG | - | tig0039058:10709-10728 | None:intergenic | 40.0% |
| ATAGGGTTGAAACCCTTGTT+TGG | + | tig0039058:10887-10906 | Msa1457620:intron | 40.0% | |
| TTGGCATTGCACTCATACTT+TGG | + | tig0039058:10933-10952 | Msa1457620:intron | 40.0% | |
| AGAAAGACGACTAGAGTAGT+AGG | - | tig0039058:11034-11053 | None:intergenic | 40.0% | |
| ACTACTCTAGTCGTCTTTCT+TGG | + | tig0039058:11034-11053 | Msa1457620:CDS | 40.0% | |
| TCTAGTCGTCTTTCTTGGTT+AGG | + | tig0039058:11039-11058 | Msa1457620:intron | 40.0% | |
| GAGGTCACATAGCTAATGAA+AGG | - | tig0039058:11068-11087 | None:intergenic | 40.0% | |
| ! | AAAGCCTTTTCCCACTAAGT+GGG | - | tig0039058:11144-11163 | None:intergenic | 40.0% |
| ! | AAAAGCCTTTTCCCACTAAG+TGG | - | tig0039058:11145-11164 | None:intergenic | 40.0% |
| ! | ACTTAGTGGGAAAAGGCTTT+TGG | + | tig0039058:11144-11163 | Msa1457620:intron | 40.0% |
| TGCATAATATATGCAAGGCC+TGG | + | tig0039058:11625-11644 | Msa1457620:intron | 40.0% | |
| GCATAATATATGCAAGGCCT+GGG | + | tig0039058:11626-11645 | Msa1457620:intron | 40.0% | |
| CATAATATATGCAAGGCCTG+GGG | + | tig0039058:11627-11646 | Msa1457620:intron | 40.0% | |
| AATAGTGGCAAGGGCTTAAA+TGG | + | tig0039058:11677-11696 | Msa1457620:intron | 40.0% | |
| ATAGTGGCAAGGGCTTAAAT+GGG | + | tig0039058:11678-11697 | Msa1457620:intron | 40.0% | |
| ! | GAAGTGATGACAAAAGGCAT+AGG | + | tig0039058:11953-11972 | Msa1457620:CDS | 40.0% |
| ! | ACTGGTACTTTTATCATCCC+CGG | - | tig0039058:12013-12032 | None:intergenic | 40.0% |
| TTTAGTTGAGCATGAAGCAG+AGG | - | tig0039058:12037-12056 | None:intergenic | 40.0% | |
| TTGAGGAGTTTCTACACTCA+AGG | + | tig0039058:12100-12119 | Msa1457620:intron | 40.0% | |
| !! | CTCGACAGGAGATATTTTGA+AGG | - | tig0039058:12203-12222 | None:intergenic | 40.0% |
| !! | GAAATGTCGATTTACTCGAC+AGG | - | tig0039058:12217-12236 | None:intergenic | 40.0% |
| GTCCTTGATACTATAAGGGT+TGG | + | tig0039058:12238-12257 | Msa1457620:intron | 40.0% | |
| TAAGCCCCTCAAATTTACGT+AGG | + | tig0039058:12266-12285 | Msa1457620:intron | 40.0% | |
| AAGCCCCTCAAATTTACGTA+GGG | + | tig0039058:12267-12286 | Msa1457620:intron | 40.0% | |
| !!! | GTCTCGAACTATTTTCGAGT+TGG | - | tig0039058:12309-12328 | None:intergenic | 40.0% |
| ! | CTATTGCGAAAATTTAGGGC+TGG | - | tig0039058:13118-13137 | None:intergenic | 40.0% |
| ! | GACTGGCTGTTACAATTTCA+AGG | + | tig0039058:13218-13237 | Msa1457620:intron | 40.0% |
| ACTAAAATACCTACTCCCTC+CGG | + | tig0039058:13241-13260 | Msa1457620:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | tig0039058:13259-13278 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | tig0039058:13260-13279 | None:intergenic | 40.0% | |
| !! | CTAAAATCCGGACTAGTAGA+AGG | - | tig0039058:13553-13572 | None:intergenic | 40.0% |
| ! | CTTCTACTAGTCCGGATTTT+AGG | + | tig0039058:13551-13570 | Msa1457620:CDS | 40.0% |
| !! | GTGCTATTTATGGTCCAAAG+AGG | + | tig0039058:13581-13600 | Msa1457620:CDS | 40.0% |
| GATTCATATGATTGCAGCGA+TGG | - | tig0039058:13610-13629 | None:intergenic | 40.0% | |
| GCAGTCATATGAATCTTCTG+AGG | + | tig0039058:13669-13688 | Msa1457620:CDS | 40.0% | |
| ! | GTCATATGAATCTTCTGAGG+AGG | + | tig0039058:13672-13691 | Msa1457620:CDS | 40.0% |
| AGGAGCTACATGAAGAAAAG+CGG | + | tig0039058:13692-13711 | Msa1457620:CDS | 40.0% | |
| GTCTCATCATAAAAGCCACT+CGG | + | tig0039058:13729-13748 | Msa1457620:CDS | 40.0% | |
| GCATAAGAAAAAGAGAAGGG+AGG | + | tig0039058:13795-13814 | Msa1457620:CDS | 40.0% | |
| ACAAGTAAACATCGACGCTA+AGG | + | tig0039058:13823-13842 | Msa1457620:CDS | 40.0% | |
| AACCTGCTGAAACAGTTGAT+TGG | + | tig0039058:13890-13909 | Msa1457620:three_prime_UTR | 40.0% | |
| ACCTGCTGAAACAGTTGATT+GGG | + | tig0039058:13891-13910 | Msa1457620:three_prime_UTR | 40.0% | |
| TACTTTGTCTCTGTCTACGG+TGG | - | tig0039058:8118-8137 | None:intergenic | 45.0% | |
| !! | GTCTGAAAAGGAAGGTGTTC+TGG | + | tig0039058:9188-9207 | Msa1457620:CDS | 45.0% |
| ! | TTTGGCCGACTCCTTACATT+AGG | - | tig0039058:9228-9247 | None:intergenic | 45.0% |
| GCAGTGAGGAAACGTGAATT+TGG | - | tig0039058:9246-9265 | None:intergenic | 45.0% | |
| GCAGTCATGCACTAATGTGT+GGG | + | tig0039058:9758-9777 | Msa1457620:intron | 45.0% | |
| ! | TGTGTGGGTCGAGTTTTCAT+CGG | + | tig0039058:9773-9792 | Msa1457620:intron | 45.0% |
| GACTTGGATCCACTAGAATG+TGG | + | tig0039058:9879-9898 | Msa1457620:intron | 45.0% | |
| ATTTGGGTCATAGCAGTGGA+TGG | + | tig0039058:10098-10117 | Msa1457620:intron | 45.0% | |
| TTTGGGTCATAGCAGTGGAT+GGG | + | tig0039058:10099-10118 | Msa1457620:intron | 45.0% | |
| TCAAACCACGCCAACATTGA+TGG | + | tig0039058:10182-10201 | Msa1457620:intron | 45.0% | |
| CAAACCACGCCAACATTGAT+GGG | + | tig0039058:10183-10202 | Msa1457620:intron | 45.0% | |
| AAACCACGCCAACATTGATG+GGG | + | tig0039058:10184-10203 | Msa1457620:intron | 45.0% | |
| TTTAGTTGGGGGAAATGGAC+AGG | - | tig0039058:10250-10269 | None:intergenic | 45.0% | |
| AGTATGAGTGCAATGCCAAG+AGG | - | tig0039058:10932-10951 | None:intergenic | 45.0% | |
| AAGATCATAGCAGATGGTGC+AGG | - | tig0039058:10986-11005 | None:intergenic | 45.0% | |
| ACTAGAGTAGTAGGAGGATG+TGG | - | tig0039058:11025-11044 | None:intergenic | 45.0% | |
| AAGACGACTAGAGTAGTAGG+AGG | - | tig0039058:11031-11050 | None:intergenic | 45.0% | |
| TTTCCCTCTTCCCACTTAGT+GGG | + | tig0039058:11131-11150 | Msa1457620:intron | 45.0% | |
| TTTCCCACTAAGTGGGAAGA+GGG | - | tig0039058:11137-11156 | None:intergenic | 45.0% | |
| ! | TTTTCCCACTAAGTGGGAAG+AGG | - | tig0039058:11138-11157 | None:intergenic | 45.0% |
| TCTTCCCACTTAGTGGGAAA+AGG | + | tig0039058:11137-11156 | Msa1457620:intron | 45.0% | |
| ! | TATCCCGCTAGAGCAGTTTT+GGG | + | tig0039058:11416-11435 | Msa1457620:intron | 45.0% |
| AAACCCAAAACTGCTCTAGC+GGG | - | tig0039058:11422-11441 | None:intergenic | 45.0% | |
| CAAACCCAAAACTGCTCTAG+CGG | - | tig0039058:11423-11442 | None:intergenic | 45.0% | |
| ! | GAGCTAGATAAACGGGTTTC+AGG | + | tig0039058:11913-11932 | Msa1457620:CDS | 45.0% |
| GGCCAACCCTTATAGTATCA+AGG | - | tig0039058:12243-12262 | None:intergenic | 45.0% | |
| CAGCCCTACGTAAATTTGAG+GGG | - | tig0039058:12273-12292 | None:intergenic | 45.0% | |
| CCAGCCCTACGTAAATTTGA+GGG | - | tig0039058:12274-12293 | None:intergenic | 45.0% | |
| CAACTCAAGTTCGGCTCATT+TGG | - | tig0039058:12370-12389 | None:intergenic | 45.0% | |
| ATTCAAGCTCACGAACAGCT+CGG | - | tig0039058:12977-12996 | None:intergenic | 45.0% | |
| ! | GAGTCAAACTTGCTTCAGCT+CGG | - | tig0039058:13081-13100 | None:intergenic | 45.0% |
| TCAGGATTAGGAGGAAGGTA+AGG | - | tig0039058:13523-13542 | None:intergenic | 45.0% | |
| CTTCATCAGGATTAGGAGGA+AGG | - | tig0039058:13528-13547 | None:intergenic | 45.0% | |
| GAAGGCTCTTCATCAGGATT+AGG | - | tig0039058:13535-13554 | None:intergenic | 45.0% | |
| CTAGTAGAAGGCTCTTCATC+AGG | - | tig0039058:13541-13560 | None:intergenic | 45.0% | |
| TGAAGAGCCTTCTACTAGTC+CGG | + | tig0039058:13543-13562 | Msa1457620:CDS | 45.0% | |
| TCATATGATTGCAGCGATGG+AGG | - | tig0039058:13607-13626 | None:intergenic | 45.0% | |
| TCATAAAAGCCACTCGGACA+AGG | + | tig0039058:13735-13754 | Msa1457620:CDS | 45.0% | |
| CATAAAAGCCACTCGGACAA+GGG | + | tig0039058:13736-13755 | Msa1457620:CDS | 45.0% | |
| ATAAAAGCCACTCGGACAAG+GGG | + | tig0039058:13737-13756 | Msa1457620:CDS | 45.0% | |
| TCCCAATCAACTGTTTCAGC+AGG | - | tig0039058:13895-13914 | None:intergenic | 45.0% | |
| TGAGGGAAGCAGCTGAATTG+CGG | + | tig0039058:9160-9179 | Msa1457620:CDS | 50.0% | |
| ! | ACCTTGTTGTACCCCACGTA+CGG | - | tig0039058:9271-9290 | None:intergenic | 50.0% |
| TATGGATGCGCTTTCGACGA+AGG | + | tig0039058:9354-9373 | Msa1457620:intron | 50.0% | |
| CGCAGTCATGCACTAATGTG+TGG | + | tig0039058:9757-9776 | Msa1457620:intron | 50.0% | |
| GTTTGATTCACAAGGGGGAG+AGG | + | tig0039058:10137-10156 | Msa1457620:intron | 50.0% | |
| ATTCCCCATCAATGTTGGCG+TGG | - | tig0039058:10190-10209 | None:intergenic | 50.0% | |
| !! | CCAAGAGGCGTGTGTTTTTG+TGG | - | tig0039058:10917-10936 | None:intergenic | 50.0% |
| CCACAAAAACACACGCCTCT+TGG | + | tig0039058:10914-10933 | Msa1457620:intron | 50.0% | |
| ATCATAGCAGATGGTGCAGG+AGG | - | tig0039058:10983-11002 | None:intergenic | 50.0% | |
| AGTAGGAGGATGTGGAACAG+AGG | - | tig0039058:11017-11036 | None:intergenic | 50.0% | |
| CTTTCCCTCTTCCCACTTAG+TGG | + | tig0039058:11130-11149 | Msa1457620:intron | 50.0% | |
| ! | CTATCCCGCTAGAGCAGTTT+TGG | + | tig0039058:11415-11434 | Msa1457620:intron | 50.0% |
| !!! | CGCTAGAGCAGTTTTGGGTT+TGG | + | tig0039058:11421-11440 | Msa1457620:intron | 50.0% |
| CCTTCCACACGTTGCAATCT+GGG | + | tig0039058:11444-11463 | Msa1457620:intron | 50.0% | |
| GAATCCCAGATTGCAACGTG+TGG | - | tig0039058:11451-11470 | None:intergenic | 50.0% | |
| ! | ACTTCGACAGCTCGATTTGC+TGG | - | tig0039058:11859-11878 | None:intergenic | 50.0% |
| ! | AGAAGCGCAGAAAGACATGC+CGG | + | tig0039058:11991-12010 | Msa1457620:CDS | 50.0% |
| CCCTCAAATTTACGTAGGGC+TGG | + | tig0039058:12271-12290 | Msa1457620:intron | 50.0% | |
| GCCAGCCCTACGTAAATTTG+AGG | - | tig0039058:12275-12294 | None:intergenic | 50.0% | |
| AGGCGAAGTGGGACTAAAAC+AGG | - | tig0039058:12775-12794 | None:intergenic | 50.0% | |
| CTTAGGACCCCCATAGTATC+GGG | - | tig0039058:12899-12918 | None:intergenic | 50.0% | |
| CCTTAGGACCCCCATAGTAT+CGG | - | tig0039058:12900-12919 | None:intergenic | 50.0% | |
| TAATAGTGACCGGAGGGAGT+AGG | - | tig0039058:13253-13272 | None:intergenic | 50.0% | |
| !! | AAGCAAGGCAGAGGTGCTAT+TGG | + | tig0039058:13475-13494 | Msa1457620:CDS | 50.0% |
| !! | AGGTGCTATTGGTCCAAGGA+TGG | + | tig0039058:13486-13505 | Msa1457620:CDS | 50.0% |
| GGCTCTTCATCAGGATTAGG+AGG | - | tig0039058:13532-13551 | None:intergenic | 50.0% | |
| !! | AGGGAACGCCGTGCTATTTA+TGG | + | tig0039058:13571-13590 | Msa1457620:CDS | 50.0% |
| !! | AGGGGCATTCTAAGAAGCAC+AGG | + | tig0039058:13755-13774 | Msa1457620:CDS | 50.0% |
| GAGAACACCGATCCCTTCGA+CGG | + | tig0039058:8090-8109 | Msa1457620:five_prime_UTR | 55.0% | |
| ATTGCGGCGGCAGTCTGAAA+AGG | + | tig0039058:9176-9195 | Msa1457620:CDS | 55.0% | |
| TTCCTCACTGCTACCGTACG+TGG | + | tig0039058:9255-9274 | Msa1457620:CDS | 55.0% | |
| TCCTCACTGCTACCGTACGT+GGG | + | tig0039058:9256-9275 | Msa1457620:CDS | 55.0% | |
| ACCGTACGTGGGGTACAACA+AGG | + | tig0039058:9267-9286 | Msa1457620:CDS | 55.0% | |
| TGATTCACAAGGGGGAGAGG+AGG | + | tig0039058:10140-10159 | Msa1457620:intron | 55.0% | |
| GAAATGGACAGGAGAGGAGG+GGG | - | tig0039058:10239-10258 | None:intergenic | 55.0% | |
| GGAAATGGACAGGAGAGGAG+GGG | - | tig0039058:10240-10259 | None:intergenic | 55.0% | |
| GGGAAATGGACAGGAGAGGA+GGG | - | tig0039058:10241-10260 | None:intergenic | 55.0% | |
| TTGGGGGAAATGGACAGGAG+AGG | - | tig0039058:10245-10264 | None:intergenic | 55.0% | |
| CACCATCGTTGCTGCCATAG+TGG | + | tig0039058:10747-10766 | Msa1457620:intron | 55.0% | |
| AGCCACTATGGCAGCAACGA+TGG | - | tig0039058:10752-10771 | None:intergenic | 55.0% | |
| TGCAGGAGGTAGTACAGGTG+TGG | - | tig0039058:10969-10988 | None:intergenic | 55.0% | |
| GATGGTGCAGGAGGTAGTAC+AGG | - | tig0039058:10974-10993 | None:intergenic | 55.0% | |
| GCCTTCCACACGTTGCAATC+TGG | + | tig0039058:11443-11462 | Msa1457620:intron | 55.0% | |
| CCCAGATTGCAACGTGTGGA+AGG | - | tig0039058:11447-11466 | None:intergenic | 55.0% | |
| GCGAGCGCGAGAGAAAGAAT+TGG | + | tig0039058:11891-11910 | Msa1457620:CDS | 55.0% | |
| GAAGCGCAGAAAGACATGCC+GGG | + | tig0039058:11992-12011 | Msa1457620:CDS | 55.0% | |
| AAGCGCAGAAAGACATGCCG+GGG | + | tig0039058:11993-12012 | Msa1457620:CDS | 55.0% | |
| ! | TGAGCATGAAGCAGAGGCAC+TGG | - | tig0039058:12031-12050 | None:intergenic | 55.0% |
| CCGATACTATGGGGGTCCTA+AGG | + | tig0039058:12897-12916 | Msa1457620:intron | 55.0% | |
| ACAGCTCGGTTCAGCTCGAT+AGG | - | tig0039058:12963-12982 | None:intergenic | 55.0% | |
| TGCAGGAAGAAGCAAGGCAG+AGG | + | tig0039058:13466-13485 | Msa1457620:intron | 55.0% | |
| !! | GCAGAGGTGCTATTGGTCCA+AGG | + | tig0039058:13482-13501 | Msa1457620:CDS | 55.0% |
| GGTCCAAGGATGGATGAGAC+TGG | + | tig0039058:13496-13515 | Msa1457620:CDS | 55.0% | |
| GGTCCAGTCTCATCCATCCT+TGG | - | tig0039058:13502-13521 | None:intergenic | 55.0% | |
| GCACGGCGTTCCCTAAAATC+CGG | - | tig0039058:13565-13584 | None:intergenic | 55.0% | |
| TAGAATGCCCCTTGTCCGAG+TGG | - | tig0039058:13747-13766 | None:intergenic | 55.0% | |
| TCTACGGTGGCACCGTCGAA+GGG | - | tig0039058:8105-8124 | None:intergenic | 60.0% | |
| GGGAAGCAGCTGAATTGCGG+CGG | + | tig0039058:9163-9182 | Msa1457620:CDS | 60.0% | |
| CGGCGGCAGTCTGAAAAGGA+AGG | + | tig0039058:9180-9199 | Msa1457620:CDS | 60.0% | |
| CCTCACTGCTACCGTACGTG+GGG | + | tig0039058:9257-9276 | Msa1457620:CDS | 60.0% | |
| GGGGAAATGGACAGGAGAGG+AGG | - | tig0039058:10242-10261 | None:intergenic | 60.0% | |
| GGAGGTAGTACAGGTGTGGC+TGG | - | tig0039058:10965-10984 | None:intergenic | 60.0% | |
| TGCAGCGATGGAGGCCTCTT+TGG | - | tig0039058:13598-13617 | None:intergenic | 60.0% | |
| GGTGGCACCGTCGAAGGGAT+CGG | - | tig0039058:8100-8119 | None:intergenic | 65.0% | |
| GTCTACGGTGGCACCGTCGA+AGG | - | tig0039058:8106-8125 | None:intergenic | 65.0% | |
| CCCCACGTACGGTAGCAGTG+AGG | - | tig0039058:9260-9279 | None:intergenic | 65.0% | |
| AAGGCCTGGGGTTCGAACCC+CGG | + | tig0039058:11639-11658 | Msa1457620:intron | 65.0% | |
| GTGTCCGGGGTTCGAACCCC+AGG | - | tig0039058:11646-11665 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0039058 | gene | 8052 | 14109 | 8052 | ID=Msa1457620;Name=Msa1457620 |
| tig0039058 | mRNA | 8052 | 14109 | 8052 | ID=Msa1457620-mRNA-1;Parent=Msa1457620;Name=Msa1457620-mRNA-1;_AED=0.08;_eAED=0.08;_QI=83|0.2|0.5|0.66|0.2|0.66|6|266|301 |
| tig0039058 | exon | 8052 | 8134 | 8052 | ID=Msa1457620-mRNA-1:exon:21273;Parent=Msa1457620-mRNA-1 |
| tig0039058 | exon | 9120 | 9288 | 9120 | ID=Msa1457620-mRNA-1:exon:21274;Parent=Msa1457620-mRNA-1 |
| tig0039058 | exon | 10966 | 11055 | 10966 | ID=Msa1457620-mRNA-1:exon:21275;Parent=Msa1457620-mRNA-1 |
| tig0039058 | exon | 11860 | 12081 | 11860 | ID=Msa1457620-mRNA-1:exon:21276;Parent=Msa1457620-mRNA-1 |
| tig0039058 | exon | 12836 | 12887 | 12836 | ID=Msa1457620-mRNA-1:exon:21277;Parent=Msa1457620-mRNA-1 |
| tig0039058 | exon | 13471 | 14109 | 13471 | ID=Msa1457620-mRNA-1:exon:21278;Parent=Msa1457620-mRNA-1 |
| tig0039058 | five_prime_UTR | 8052 | 8134 | 8052 | ID=Msa1457620-mRNA-1:five_prime_utr;Parent=Msa1457620-mRNA-1 |
| tig0039058 | CDS | 9120 | 9288 | 9120 | ID=Msa1457620-mRNA-1:cds;Parent=Msa1457620-mRNA-1 |
| tig0039058 | CDS | 10966 | 11055 | 10966 | ID=Msa1457620-mRNA-1:cds;Parent=Msa1457620-mRNA-1 |
| tig0039058 | CDS | 11860 | 12081 | 11860 | ID=Msa1457620-mRNA-1:cds;Parent=Msa1457620-mRNA-1 |
| tig0039058 | CDS | 12836 | 12887 | 12836 | ID=Msa1457620-mRNA-1:cds;Parent=Msa1457620-mRNA-1 |
| tig0039058 | CDS | 13471 | 13843 | 13471 | ID=Msa1457620-mRNA-1:cds;Parent=Msa1457620-mRNA-1 |
| tig0039058 | three_prime_UTR | 13844 | 14109 | 13844 | ID=Msa1457620-mRNA-1:three_prime_utr;Parent=Msa1457620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
