AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0803960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803960 MtrunA17_Chr5g0421541 93.567 171 11 0 1 171 1 171 1.49e-115 325
Msa0803960 MtrunA17_Chr5g0412061 93.296 179 12 0 1 179 418 596 2.43e-115 339
Msa0803960 MtrunA17_Chr5g0412011 100.000 47 0 0 133 179 5 51 2.54e-25 92.4
Msa0803960 MtrunA17_Chr4g0049801 58.108 74 31 0 100 173 538 611 5.01e-21 89.4
Msa0803960 MtrunA17_Chr2g0279641 58.974 78 31 1 96 173 685 761 7.34e-20 86.3
Msa0803960 MtrunA17_Chr3g0140741 47.436 78 40 1 102 179 585 661 1.28e-14 70.9
Msa0803960 MtrunA17_Chr4g0002241 44.706 85 45 2 90 173 515 598 2.96e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803960 AT5G64390.1 56.977 86 36 1 94 179 765 849 9.65e-20 86.3
Msa0803960 AT5G64390.3 57.143 84 35 1 96 179 776 858 3.61e-19 84.7
Msa0803960 AT1G51580.1 50.649 77 37 1 102 178 546 621 1.77e-16 76.6
Msa0803960 AT2G22600.1 28.704 216 107 7 1 173 418 629 2.27e-15 73.6

Find 83 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAAATTCCATAAATATT+TGG 0.071592 5_3:-19507878 None:intergenic
CCCAAATATTTATGGAATTT+TGG 0.101663 5_3:+19507877 Msa0803960:three_prime_UTR
CTAACAGTATCTTTATTTAA+AGG 0.143435 5_3:-19505996 None:intergenic
GTAAAATCACTTCTATAATT+AGG 0.149460 5_3:+19505919 Msa0803960:CDS
CTGCAACTCCCAAATATTTA+TGG 0.210265 5_3:+19507869 Msa0803960:three_prime_UTR
TGTTTCTGGGACCAGATTTC+AGG 0.214487 5_3:+19507220 Msa0803960:intron
CATGTCTTTGGTTCTGTTTA+TGG 0.268455 5_3:+19506556 Msa0803960:CDS
GCTCCCGTTGTACCGTTTAT+TGG 0.280445 5_3:+19507640 Msa0803960:three_prime_UTR
CCAAAATTCCATAAATATTT+GGG 0.294768 5_3:-19507877 None:intergenic
TCCACTTGTACCGGTGCTGC+TGG 0.296182 5_3:-19507266 None:intergenic
GAGGGTTGAAATGGAAGTTC+TGG 0.297585 5_3:-19507953 None:intergenic
TAAAATCACTTCTATAATTA+GGG 0.310912 5_3:+19505920 Msa0803960:CDS
GGAGGGAAGGTTGTGATATC+TGG 0.316287 5_3:+19507286 Msa0803960:CDS
ATAGTCTCAGAGCATGTCTT+TGG 0.359338 5_3:+19506544 Msa0803960:CDS
TCTTGGATTGATACATTTGT+TGG 0.359625 5_3:+19507843 Msa0803960:three_prime_UTR
TTTATAGAGTCTAAGAAAAT+CGG 0.362814 5_3:+19507768 Msa0803960:three_prime_UTR
CTTTAAATAAAGATACTGTT+AGG 0.366560 5_3:+19505997 Msa0803960:CDS
TGCTTCAGCAAGCACCTCAT+TGG 0.367887 5_3:-19505955 None:intergenic
TAAAGTTCTTCCTTCAAAAC+AGG 0.372152 5_3:+19507417 Msa0803960:three_prime_UTR
CCAGTGGCTGAGTTTCTTGT+CGG 0.382288 5_3:+19505794 Msa0803960:five_prime_UTR
TTCACTTCAAAATGATATGA+TGG 0.402197 5_3:+19507531 Msa0803960:three_prime_UTR
CAGTGGCTGAGTTTCTTGTC+GGG 0.402249 5_3:+19505795 Msa0803960:five_prime_UTR
CAAAGCTAAGCTTTGATAAC+GGG 0.408830 5_3:-19507926 None:intergenic
GAGCTTATGAAAACAGCTTA+TGG 0.409950 5_3:-19505740 None:intergenic
CTTGGATTGATACATTTGTT+GGG 0.415316 5_3:+19507844 Msa0803960:three_prime_UTR
ATATGTACACCAACCACTAA+TGG 0.431634 5_3:-19507448 None:intergenic
CTTGTATATTTGCAGAATGC+AGG 0.433629 5_3:+19506168 Msa0803960:intron
GCTTCAGCAAGCACCTCATT+GGG 0.447960 5_3:-19505954 None:intergenic
AGGGGTGTATCAAACTAAAA+AGG 0.457022 5_3:+19506188 Msa0803960:CDS
AAAATGATGGTACCAATAAA+CGG 0.465560 5_3:-19507652 None:intergenic
TCTTTATTTAAAGGAAAACT+TGG 0.475566 5_3:-19505987 None:intergenic
ACAGGAGGAGGTGCCATTAG+TGG 0.480446 5_3:+19507435 Msa0803960:three_prime_UTR
GGTTCTGTTTATGGTGAAGA+TGG 0.482448 5_3:+19506565 Msa0803960:CDS
AAATGTGTCTGTTAGTCTAC+AGG 0.484540 5_3:-19507560 None:intergenic
TCAAAGCTAAGCTTTGATAA+CGG 0.492069 5_3:-19507927 None:intergenic
TGTCTCTCTCGAAAGGGCTG+TGG 0.497731 5_3:+19507615 Msa0803960:three_prime_UTR
GTCTCTCTCGAAAGGGCTGT+GGG 0.498008 5_3:+19507616 Msa0803960:three_prime_UTR
GTACCAATAAACGGTACAAC+GGG 0.499105 5_3:-19507643 None:intergenic
TGAGCTGCAAATGTTTGATC+AGG 0.504272 5_3:-19507313 None:intergenic
TATTAACTGTCTCTCTCGAA+AGG 0.504751 5_3:+19507608 Msa0803960:three_prime_UTR
CCACTTGTACCGGTGCTGCT+GGG 0.508804 5_3:-19507265 None:intergenic
TGTGGTAGAAACCTCGCAAA+AGG 0.510464 5_3:-19506053 None:intergenic
GCAAGCACCTCATTGGGTAA+AGG 0.515760 5_3:-19505948 None:intergenic
CAATTTAGATCGAATTAGAC+AGG 0.516065 5_3:+19506591 Msa0803960:CDS
AACCTCGCAAAAGGAAAAGA+AGG 0.524946 5_3:-19506044 None:intergenic
CTAGTTCGCCCTTGATGTGA+AGG 0.525757 5_3:+19507794 Msa0803960:three_prime_UTR
TTGTATATTTGCAGAATGCA+GGG 0.526025 5_3:+19506169 Msa0803960:intron
TAATAGCCACCTTCACATCA+AGG 0.526128 5_3:-19507803 None:intergenic
ATTAACTGTCTCTCTCGAAA+GGG 0.529725 5_3:+19507609 Msa0803960:three_prime_UTR
AGCAGCACCGGTACAAGTGG+AGG 0.530406 5_3:+19507268 Msa0803960:CDS
TAATATTATTCACAAGTTGA+AGG 0.532533 5_3:-19507490 None:intergenic
AATAAGTTGAAAACAACGTA+TGG 0.532786 5_3:+19505712 Msa0803960:five_prime_UTR
AACCTTCCCTCCACTTGTAC+CGG 0.534868 5_3:-19507275 None:intergenic
AGATATTTCATGCAGATCAC+TGG 0.535144 5_3:+19505867 Msa0803960:exon
TCGAGAATGTGGAACCTGGC+AGG 0.535373 5_3:+19506244 Msa0803960:CDS
GGATAATCCTTTACCCAATG+AGG 0.546589 5_3:+19505941 Msa0803960:CDS
AAACTGCACAAGCAAGCTGA+TGG 0.546668 5_3:+19507359 Msa0803960:CDS
TCTTCCTTCAAAACAGGAGG+AGG 0.549693 5_3:+19507423 Msa0803960:three_prime_UTR
CCCAGCAGCACCGGTACAAG+TGG 0.551623 5_3:+19507265 Msa0803960:CDS
TAGGTCTTGGAGCAAAATGA+TGG 0.552186 5_3:-19507665 None:intergenic
AGTTCTTCCTTCAAAACAGG+AGG 0.563223 5_3:+19507420 Msa0803960:three_prime_UTR
AGTGGCTGAGTTTCTTGTCG+GGG 0.572697 5_3:+19505796 Msa0803960:five_prime_UTR
CTGGATTATACTGACCTGCC+AGG 0.574862 5_3:-19506258 None:intergenic
GAGCGCTTCTGAGATTGTCT+AGG 0.575487 5_3:-19505768 None:intergenic
TGCACAAGCAAGCTGATGGA+TGG 0.576534 5_3:+19507363 Msa0803960:exon
CACCGGTACAAGTGGAGGGA+AGG 0.577288 5_3:+19507273 Msa0803960:CDS
CTCAGAAGCGCTCATGCCAG+TGG 0.591894 5_3:+19505778 Msa0803960:five_prime_UTR
TTAATCGAGAATGTGGAACC+TGG 0.593430 5_3:+19506240 Msa0803960:CDS
CAAGCAAGCTGATGGATGGA+TGG 0.593818 5_3:+19507367 Msa0803960:exon
TATTTCATGCAGATCACTGG+TGG 0.600462 5_3:+19505870 Msa0803960:exon
CTCTGAGACTATAATCTCCA+CGG 0.600704 5_3:-19506533 None:intergenic
CCGACAAGAAACTCAGCCAC+TGG 0.603807 5_3:-19505794 None:intergenic
AATAGCCACCTTCACATCAA+GGG 0.605389 5_3:-19507802 None:intergenic
GCAGCACCGGTACAAGTGGA+GGG 0.608583 5_3:+19507269 Msa0803960:CDS
GAGGAGGTGCCATTAGTGGT+TGG 0.618086 5_3:+19507439 Msa0803960:three_prime_UTR
GTATTTGATCCCAGCAGCAC+CGG 0.627371 5_3:+19507256 Msa0803960:CDS
GTTCGCCCTTGATGTGAAGG+TGG 0.627579 5_3:+19507797 Msa0803960:three_prime_UTR
TGTATATTTGCAGAATGCAG+GGG 0.651347 5_3:+19506170 Msa0803960:intron
GGTACCAATAAACGGTACAA+CGG 0.660572 5_3:-19507644 None:intergenic
CACGGTAGTGTTTGTCACAG+TGG 0.663033 5_3:-19506515 None:intergenic
TGTGTCTGTTAGTCTACAGG+AGG 0.667705 5_3:-19507557 None:intergenic
TCTGTTTATGGTGAAGATGG+CGG 0.667726 5_3:+19506568 Msa0803960:CDS
CACTGTGACAAACACTACCG+TGG 0.720924 5_3:+19506516 Msa0803960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATCACTTCTATAATTA+GGG + chr5_3:19505920-19505939 Msa0803960:CDS 15.0%
!!! AGTGATAATGATTTTAATTA+AGG + chr5_3:19506738-19506757 Msa0803960:intron 15.0%
!!! ATAATGATTTTAATTAAGGT+AGG + chr5_3:19506742-19506761 Msa0803960:intron 15.0%
!!! ATCTGCATTTTTTTATTAAA+CGG - chr5_3:19506955-19506974 None:intergenic 15.0%
!! ATAATACTAATACAAATGAA+AGG + chr5_3:19506981-19507000 Msa0803960:intron 15.0%
!!! TAGATTATATTTGTTGTATA+TGG + chr5_3:19507031-19507050 Msa0803960:intron 15.0%
!!! CTCAATTTTTTATTTGTATA+AGG + chr5_3:19507141-19507160 Msa0803960:intron 15.0%
!!! TTTTATTTGTATAAGGATTA+TGG + chr5_3:19507148-19507167 Msa0803960:intron 15.0%
!! TAAAATCACTTCTATAATTA+GGG + chr5_3:19505920-19505939 Msa0803960:CDS 15.0%
!!! AGTGATAATGATTTTAATTA+AGG + chr5_3:19506738-19506757 Msa0803960:intron 15.0%
!!! ATAATGATTTTAATTAAGGT+AGG + chr5_3:19506742-19506761 Msa0803960:intron 15.0%
!!! ATCTGCATTTTTTTATTAAA+CGG - chr5_3:19506955-19506974 None:intergenic 15.0%
!! ATAATACTAATACAAATGAA+AGG + chr5_3:19506981-19507000 Msa0803960:intron 15.0%
!!! TAGATTATATTTGTTGTATA+TGG + chr5_3:19507031-19507050 Msa0803960:intron 15.0%
!!! CTCAATTTTTTATTTGTATA+AGG + chr5_3:19507141-19507160 Msa0803960:intron 15.0%
!!! TTTTATTTGTATAAGGATTA+TGG + chr5_3:19507148-19507167 Msa0803960:intron 15.0%
!! AAACAGTAAGAAAAAATTGT+TGG - chr5_3:19505824-19505843 None:intergenic 20.0%
!! GTAAAATCACTTCTATAATT+AGG + chr5_3:19505919-19505938 Msa0803960:CDS 20.0%
!!! TCTTTATTTAAAGGAAAACT+TGG - chr5_3:19505990-19506009 None:intergenic 20.0%
!!! CTAACAGTATCTTTATTTAA+AGG - chr5_3:19505999-19506018 None:intergenic 20.0%
!! CTTTAAATAAAGATACTGTT+AGG + chr5_3:19505997-19506016 Msa0803960:CDS 20.0%
!! AAAGATGGTTAAAATAAAGA+AGG - chr5_3:19506090-19506109 None:intergenic 20.0%
!! TGTAATAGAATATCAAAAGA+TGG - chr5_3:19506105-19506124 None:intergenic 20.0%
!!! TTCTCGATTAAATTTTTATG+TGG - chr5_3:19506231-19506250 None:intergenic 20.0%
!! TAAAAATTTAATCGAGAATG+TGG + chr5_3:19506233-19506252 Msa0803960:CDS 20.0%
!! GTTAATATTTATTATGCCAT+TGG - chr5_3:19506367-19506386 None:intergenic 20.0%
!! TGCATAAAATAATATATTGC+TGG + chr5_3:19506393-19506412 Msa0803960:intron 20.0%
!! TAAACTTTCTTCTGATTATT+TGG + chr5_3:19506680-19506699 Msa0803960:intron 20.0%
!! TTAAGGTAGGAAAAAAAAAA+AGG + chr5_3:19506755-19506774 Msa0803960:intron 20.0%
!! AAACGGTTTAAACATAAAAA+GGG - chr5_3:19506938-19506957 None:intergenic 20.0%
!! TAAACGGTTTAAACATAAAA+AGG - chr5_3:19506939-19506958 None:intergenic 20.0%
!!! TATTTGTTGTATATGGATTA+TGG + chr5_3:19507038-19507057 Msa0803960:intron 20.0%
!!! TAATATTATTCACAAGTTGA+AGG - chr5_3:19507493-19507512 None:intergenic 20.0%
!!! AAGGATGAACTTTTATAAAT+AGG - chr5_3:19507687-19507706 None:intergenic 20.0%
!! TTTATAGAGTCTAAGAAAAT+CGG + chr5_3:19507768-19507787 Msa0803960:three_prime_UTR 20.0%
!! CCAAAATTCCATAAATATTT+GGG - chr5_3:19507880-19507899 None:intergenic 20.0%
!! AAACAGTAAGAAAAAATTGT+TGG - chr5_3:19505824-19505843 None:intergenic 20.0%
!! GTAAAATCACTTCTATAATT+AGG + chr5_3:19505919-19505938 Msa0803960:CDS 20.0%
!!! TCTTTATTTAAAGGAAAACT+TGG - chr5_3:19505990-19506009 None:intergenic 20.0%
!!! CTAACAGTATCTTTATTTAA+AGG - chr5_3:19505999-19506018 None:intergenic 20.0%
!! CTTTAAATAAAGATACTGTT+AGG + chr5_3:19505997-19506016 Msa0803960:CDS 20.0%
!! AAAGATGGTTAAAATAAAGA+AGG - chr5_3:19506090-19506109 None:intergenic 20.0%
!! TGTAATAGAATATCAAAAGA+TGG - chr5_3:19506105-19506124 None:intergenic 20.0%
!!! TTCTCGATTAAATTTTTATG+TGG - chr5_3:19506231-19506250 None:intergenic 20.0%
!! TAAAAATTTAATCGAGAATG+TGG + chr5_3:19506233-19506252 Msa0803960:CDS 20.0%
!! GTTAATATTTATTATGCCAT+TGG - chr5_3:19506367-19506386 None:intergenic 20.0%
!! TGCATAAAATAATATATTGC+TGG + chr5_3:19506393-19506412 Msa0803960:intron 20.0%
!! TAAACTTTCTTCTGATTATT+TGG + chr5_3:19506680-19506699 Msa0803960:intron 20.0%
!! TTAAGGTAGGAAAAAAAAAA+AGG + chr5_3:19506755-19506774 Msa0803960:intron 20.0%
!! AAACGGTTTAAACATAAAAA+GGG - chr5_3:19506938-19506957 None:intergenic 20.0%
!! TAAACGGTTTAAACATAAAA+AGG - chr5_3:19506939-19506958 None:intergenic 20.0%
!!! TATTTGTTGTATATGGATTA+TGG + chr5_3:19507038-19507057 Msa0803960:intron 20.0%
!!! TAATATTATTCACAAGTTGA+AGG - chr5_3:19507493-19507512 None:intergenic 20.0%
!!! AAGGATGAACTTTTATAAAT+AGG - chr5_3:19507687-19507706 None:intergenic 20.0%
!! TTTATAGAGTCTAAGAAAAT+CGG + chr5_3:19507768-19507787 Msa0803960:three_prime_UTR 20.0%
!! CCAAAATTCCATAAATATTT+GGG - chr5_3:19507880-19507899 None:intergenic 20.0%
!! AATAAGTTGAAAACAACGTA+TGG + chr5_3:19505712-19505731 Msa0803960:five_prime_UTR 25.0%
!! TAAGATTTTACTAAGGGAAA+GGG - chr5_3:19506317-19506336 None:intergenic 25.0%
!!! GGAATCTAAGATTTTACTAA+GGG - chr5_3:19506323-19506342 None:intergenic 25.0%
!!! AGGAATCTAAGATTTTACTA+AGG - chr5_3:19506324-19506343 None:intergenic 25.0%
! CTTCTACATCTAATAATTAC+AGG - chr5_3:19506344-19506363 None:intergenic 25.0%
!!! TTTTTTCAACCTTTCTCTTT+TGG + chr5_3:19506462-19506481 Msa0803960:intron 25.0%
!! AAGATTTTACCAAAAGAGAA+AGG - chr5_3:19506474-19506493 None:intergenic 25.0%
!! TCTCTTTTGGTAAAATCTTT+TGG + chr5_3:19506475-19506494 Msa0803960:intron 25.0%
! AATTCATGTCATCTTTCTAA+GGG - chr5_3:19506633-19506652 None:intergenic 25.0%
! TAATTCATGTCATCTTTCTA+AGG - chr5_3:19506634-19506653 None:intergenic 25.0%
!!! ATGAATTATTTAATTTGCCG+TGG + chr5_3:19506646-19506665 Msa0803960:intron 25.0%
! TTTGAATCATTTGATCATTG+TGG + chr5_3:19506708-19506727 Msa0803960:intron 25.0%
! TACTGTAACTCCAAAAAATT+AGG + chr5_3:19506829-19506848 Msa0803960:intron 25.0%
! ACTGTAACTCCAAAAAATTA+GGG + chr5_3:19506830-19506849 Msa0803960:intron 25.0%
!!! GCTAAAATTCCCTAATTTTT+TGG - chr5_3:19506842-19506861 None:intergenic 25.0%
! GAAAGTCTAAACTTTGATAA+TGG - chr5_3:19506893-19506912 None:intergenic 25.0%
! TTCACTTCAAAATGATATGA+TGG + chr5_3:19507531-19507550 Msa0803960:three_prime_UTR 25.0%
!! AGACACATTTTGTTAGATTT+TGG + chr5_3:19507573-19507592 Msa0803960:three_prime_UTR 25.0%
! AAAATGATGGTACCAATAAA+CGG - chr5_3:19507655-19507674 None:intergenic 25.0%
!! GAACTTTTATAAATAGGTCT+TGG - chr5_3:19507681-19507700 None:intergenic 25.0%
!! CCCAAATATTTATGGAATTT+TGG + chr5_3:19507877-19507896 Msa0803960:three_prime_UTR 25.0%
! GCCAAAATTCCATAAATATT+TGG - chr5_3:19507881-19507900 None:intergenic 25.0%
!! AATAAGTTGAAAACAACGTA+TGG + chr5_3:19505712-19505731 Msa0803960:five_prime_UTR 25.0%
!! TAAGATTTTACTAAGGGAAA+GGG - chr5_3:19506317-19506336 None:intergenic 25.0%
!!! GGAATCTAAGATTTTACTAA+GGG - chr5_3:19506323-19506342 None:intergenic 25.0%
!!! AGGAATCTAAGATTTTACTA+AGG - chr5_3:19506324-19506343 None:intergenic 25.0%
! CTTCTACATCTAATAATTAC+AGG - chr5_3:19506344-19506363 None:intergenic 25.0%
!!! TTTTTTCAACCTTTCTCTTT+TGG + chr5_3:19506462-19506481 Msa0803960:intron 25.0%
!! AAGATTTTACCAAAAGAGAA+AGG - chr5_3:19506474-19506493 None:intergenic 25.0%
!! TCTCTTTTGGTAAAATCTTT+TGG + chr5_3:19506475-19506494 Msa0803960:intron 25.0%
! AATTCATGTCATCTTTCTAA+GGG - chr5_3:19506633-19506652 None:intergenic 25.0%
! TAATTCATGTCATCTTTCTA+AGG - chr5_3:19506634-19506653 None:intergenic 25.0%
!!! ATGAATTATTTAATTTGCCG+TGG + chr5_3:19506646-19506665 Msa0803960:intron 25.0%
! TTTGAATCATTTGATCATTG+TGG + chr5_3:19506708-19506727 Msa0803960:intron 25.0%
! TACTGTAACTCCAAAAAATT+AGG + chr5_3:19506829-19506848 Msa0803960:intron 25.0%
! ACTGTAACTCCAAAAAATTA+GGG + chr5_3:19506830-19506849 Msa0803960:intron 25.0%
!!! GCTAAAATTCCCTAATTTTT+TGG - chr5_3:19506842-19506861 None:intergenic 25.0%
! GAAAGTCTAAACTTTGATAA+TGG - chr5_3:19506893-19506912 None:intergenic 25.0%
! TTCACTTCAAAATGATATGA+TGG + chr5_3:19507531-19507550 Msa0803960:three_prime_UTR 25.0%
!! AGACACATTTTGTTAGATTT+TGG + chr5_3:19507573-19507592 Msa0803960:three_prime_UTR 25.0%
! AAAATGATGGTACCAATAAA+CGG - chr5_3:19507655-19507674 None:intergenic 25.0%
!! GAACTTTTATAAATAGGTCT+TGG - chr5_3:19507681-19507700 None:intergenic 25.0%
!! CCCAAATATTTATGGAATTT+TGG + chr5_3:19507877-19507896 Msa0803960:three_prime_UTR 25.0%
! GCCAAAATTCCATAAATATT+TGG - chr5_3:19507881-19507900 None:intergenic 25.0%
!!! AAGGAAAAGAAGGTTTTTTG+CGG - chr5_3:19506037-19506056 None:intergenic 30.0%
!!! ATTACATCTCTTGTTTTCCA+AGG + chr5_3:19506119-19506138 Msa0803960:intron 30.0%
!!! TTACATCTCTTGTTTTCCAA+GGG + chr5_3:19506120-19506139 Msa0803960:intron 30.0%
AATCTTGTACTAAAAACCCT+TGG - chr5_3:19506139-19506158 None:intergenic 30.0%
TTGTATATTTGCAGAATGCA+GGG + chr5_3:19506169-19506188 Msa0803960:intron 30.0%
TAAAAAGGTCACAGAAAATG+TGG + chr5_3:19506203-19506222 Msa0803960:CDS 30.0%
! CTAAGATTTTACTAAGGGAA+AGG - chr5_3:19506318-19506337 None:intergenic 30.0%
TTATTAGATGTAGAAGCCAA+TGG + chr5_3:19506348-19506367 Msa0803960:intron 30.0%
CAATTTAGATCGAATTAGAC+AGG + chr5_3:19506591-19506610 Msa0803960:CDS 30.0%
!! ATTATTTAATTTGCCGTGGT+TGG + chr5_3:19506650-19506669 Msa0803960:intron 30.0%
!! TTATTTAATTTGCCGTGGTT+GGG + chr5_3:19506651-19506670 Msa0803960:intron 30.0%
! CATTTGATCATTGTGGTTTT+TGG + chr5_3:19506715-19506734 Msa0803960:intron 30.0%
TTGCACCAAGTGAAATTTAT+TGG + chr5_3:19506867-19506886 Msa0803960:intron 30.0%
AATGGCCAATAAATTTCACT+TGG - chr5_3:19506875-19506894 None:intergenic 30.0%
GACGGTTGTAAAATGTTTAT+TGG + chr5_3:19507086-19507105 Msa0803960:intron 30.0%
TAAAGTTCTTCCTTCAAAAC+AGG + chr5_3:19507417-19507436 Msa0803960:three_prime_UTR 30.0%
TCTTGGATTGATACATTTGT+TGG + chr5_3:19507843-19507862 Msa0803960:three_prime_UTR 30.0%
CTTGGATTGATACATTTGTT+GGG + chr5_3:19507844-19507863 Msa0803960:three_prime_UTR 30.0%
! TCAAAGCTAAGCTTTGATAA+CGG - chr5_3:19507930-19507949 None:intergenic 30.0%
!!! AAGGAAAAGAAGGTTTTTTG+CGG - chr5_3:19506037-19506056 None:intergenic 30.0%
!!! ATTACATCTCTTGTTTTCCA+AGG + chr5_3:19506119-19506138 Msa0803960:intron 30.0%
!!! TTACATCTCTTGTTTTCCAA+GGG + chr5_3:19506120-19506139 Msa0803960:intron 30.0%
AATCTTGTACTAAAAACCCT+TGG - chr5_3:19506139-19506158 None:intergenic 30.0%
TTGTATATTTGCAGAATGCA+GGG + chr5_3:19506169-19506188 Msa0803960:intron 30.0%
TAAAAAGGTCACAGAAAATG+TGG + chr5_3:19506203-19506222 Msa0803960:CDS 30.0%
! CTAAGATTTTACTAAGGGAA+AGG - chr5_3:19506318-19506337 None:intergenic 30.0%
TTATTAGATGTAGAAGCCAA+TGG + chr5_3:19506348-19506367 Msa0803960:intron 30.0%
CAATTTAGATCGAATTAGAC+AGG + chr5_3:19506591-19506610 Msa0803960:CDS 30.0%
!! ATTATTTAATTTGCCGTGGT+TGG + chr5_3:19506650-19506669 Msa0803960:intron 30.0%
!! TTATTTAATTTGCCGTGGTT+GGG + chr5_3:19506651-19506670 Msa0803960:intron 30.0%
! CATTTGATCATTGTGGTTTT+TGG + chr5_3:19506715-19506734 Msa0803960:intron 30.0%
TTGCACCAAGTGAAATTTAT+TGG + chr5_3:19506867-19506886 Msa0803960:intron 30.0%
AATGGCCAATAAATTTCACT+TGG - chr5_3:19506875-19506894 None:intergenic 30.0%
GACGGTTGTAAAATGTTTAT+TGG + chr5_3:19507086-19507105 Msa0803960:intron 30.0%
TAAAGTTCTTCCTTCAAAAC+AGG + chr5_3:19507417-19507436 Msa0803960:three_prime_UTR 30.0%
TCTTGGATTGATACATTTGT+TGG + chr5_3:19507843-19507862 Msa0803960:three_prime_UTR 30.0%
CTTGGATTGATACATTTGTT+GGG + chr5_3:19507844-19507863 Msa0803960:three_prime_UTR 30.0%
! TCAAAGCTAAGCTTTGATAA+CGG - chr5_3:19507930-19507949 None:intergenic 30.0%
GAGCTTATGAAAACAGCTTA+TGG - chr5_3:19505743-19505762 None:intergenic 35.0%
AGATATTTCATGCAGATCAC+TGG + chr5_3:19505867-19505886 Msa0803960:exon 35.0%
!!! AGGAAAAGAAGGTTTTTTGC+GGG - chr5_3:19506036-19506055 None:intergenic 35.0%
CTTGTATATTTGCAGAATGC+AGG + chr5_3:19506168-19506187 Msa0803960:intron 35.0%
TGTATATTTGCAGAATGCAG+GGG + chr5_3:19506170-19506189 Msa0803960:intron 35.0%
! AGGGGTGTATCAAACTAAAA+AGG + chr5_3:19506188-19506207 Msa0803960:CDS 35.0%
GGGAGAAAAAATCACAGAAA+AGG - chr5_3:19506297-19506316 None:intergenic 35.0%
GTTGAAAAAAGATCAGAAGC+AGG - chr5_3:19506452-19506471 None:intergenic 35.0%
! TTGGTAAAATCTTTTGGCAG+AGG + chr5_3:19506481-19506500 Msa0803960:intron 35.0%
!! CATGTCTTTGGTTCTGTTTA+TGG + chr5_3:19506556-19506575 Msa0803960:CDS 35.0%
! ACATTTTACAACCGTCCTTA+AGG - chr5_3:19507082-19507101 None:intergenic 35.0%
!! ATATGCTCTAGTGTTGTTTC+TGG + chr5_3:19507206-19507225 Msa0803960:intron 35.0%
!! TATGCTCTAGTGTTGTTTCT+GGG + chr5_3:19507207-19507226 Msa0803960:intron 35.0%
ATATGTACACCAACCACTAA+TGG - chr5_3:19507451-19507470 None:intergenic 35.0%
! AAATGTGTCTGTTAGTCTAC+AGG - chr5_3:19507563-19507582 None:intergenic 35.0%
TATTAACTGTCTCTCTCGAA+AGG + chr5_3:19507608-19507627 Msa0803960:three_prime_UTR 35.0%
ATTAACTGTCTCTCTCGAAA+GGG + chr5_3:19507609-19507628 Msa0803960:three_prime_UTR 35.0%
AGCTAAAAAAGCGAAGGAAA+AGG - chr5_3:19507706-19507725 None:intergenic 35.0%
ATCACTAGCTAAAAAAGCGA+AGG - chr5_3:19507712-19507731 None:intergenic 35.0%
!!! GAGTTTTATTTCGAGTCTCT+TGG + chr5_3:19507826-19507845 Msa0803960:three_prime_UTR 35.0%
CTGCAACTCCCAAATATTTA+TGG + chr5_3:19507869-19507888 Msa0803960:three_prime_UTR 35.0%
! CAAAGCTAAGCTTTGATAAC+GGG - chr5_3:19507929-19507948 None:intergenic 35.0%
GAGCTTATGAAAACAGCTTA+TGG - chr5_3:19505743-19505762 None:intergenic 35.0%
AGATATTTCATGCAGATCAC+TGG + chr5_3:19505867-19505886 Msa0803960:exon 35.0%
!!! AGGAAAAGAAGGTTTTTTGC+GGG - chr5_3:19506036-19506055 None:intergenic 35.0%
CTTGTATATTTGCAGAATGC+AGG + chr5_3:19506168-19506187 Msa0803960:intron 35.0%
TGTATATTTGCAGAATGCAG+GGG + chr5_3:19506170-19506189 Msa0803960:intron 35.0%
! AGGGGTGTATCAAACTAAAA+AGG + chr5_3:19506188-19506207 Msa0803960:CDS 35.0%
GGGAGAAAAAATCACAGAAA+AGG - chr5_3:19506297-19506316 None:intergenic 35.0%
GTTGAAAAAAGATCAGAAGC+AGG - chr5_3:19506452-19506471 None:intergenic 35.0%
! TTGGTAAAATCTTTTGGCAG+AGG + chr5_3:19506481-19506500 Msa0803960:intron 35.0%
!! CATGTCTTTGGTTCTGTTTA+TGG + chr5_3:19506556-19506575 Msa0803960:CDS 35.0%
! ACATTTTACAACCGTCCTTA+AGG - chr5_3:19507082-19507101 None:intergenic 35.0%
!! ATATGCTCTAGTGTTGTTTC+TGG + chr5_3:19507206-19507225 Msa0803960:intron 35.0%
!! TATGCTCTAGTGTTGTTTCT+GGG + chr5_3:19507207-19507226 Msa0803960:intron 35.0%
ATATGTACACCAACCACTAA+TGG - chr5_3:19507451-19507470 None:intergenic 35.0%
! AAATGTGTCTGTTAGTCTAC+AGG - chr5_3:19507563-19507582 None:intergenic 35.0%
TATTAACTGTCTCTCTCGAA+AGG + chr5_3:19507608-19507627 Msa0803960:three_prime_UTR 35.0%
ATTAACTGTCTCTCTCGAAA+GGG + chr5_3:19507609-19507628 Msa0803960:three_prime_UTR 35.0%
AGCTAAAAAAGCGAAGGAAA+AGG - chr5_3:19507706-19507725 None:intergenic 35.0%
ATCACTAGCTAAAAAAGCGA+AGG - chr5_3:19507712-19507731 None:intergenic 35.0%
!!! GAGTTTTATTTCGAGTCTCT+TGG + chr5_3:19507826-19507845 Msa0803960:three_prime_UTR 35.0%
CTGCAACTCCCAAATATTTA+TGG + chr5_3:19507869-19507888 Msa0803960:three_prime_UTR 35.0%
! CAAAGCTAAGCTTTGATAAC+GGG - chr5_3:19507929-19507948 None:intergenic 35.0%
TATTTCATGCAGATCACTGG+TGG + chr5_3:19505870-19505889 Msa0803960:exon 40.0%
GGATAATCCTTTACCCAATG+AGG + chr5_3:19505941-19505960 Msa0803960:CDS 40.0%
! AACCTTCTTTTCCTTTTGCG+AGG + chr5_3:19506042-19506061 Msa0803960:CDS 40.0%
AACCTCGCAAAAGGAAAAGA+AGG - chr5_3:19506047-19506066 None:intergenic 40.0%
AAGAAGGTGAAGAATACCTG+TGG - chr5_3:19506074-19506093 None:intergenic 40.0%
TTAATCGAGAATGTGGAACC+TGG + chr5_3:19506240-19506259 Msa0803960:CDS 40.0%
!! CTCTGAGACTATAATCTCCA+CGG - chr5_3:19506536-19506555 None:intergenic 40.0%
ATAGTCTCAGAGCATGTCTT+TGG + chr5_3:19506544-19506563 Msa0803960:CDS 40.0%
GGTTCTGTTTATGGTGAAGA+TGG + chr5_3:19506565-19506584 Msa0803960:CDS 40.0%
TCTGTTTATGGTGAAGATGG+CGG + chr5_3:19506568-19506587 Msa0803960:CDS 40.0%
TAACATCTGCACCTGAAATC+TGG - chr5_3:19507234-19507253 None:intergenic 40.0%
TGAGCTGCAAATGTTTGATC+AGG - chr5_3:19507316-19507335 None:intergenic 40.0%
AGTTCTTCCTTCAAAACAGG+AGG + chr5_3:19507420-19507439 Msa0803960:three_prime_UTR 40.0%
GTACCAATAAACGGTACAAC+GGG - chr5_3:19507646-19507665 None:intergenic 40.0%
GGTACCAATAAACGGTACAA+CGG - chr5_3:19507647-19507666 None:intergenic 40.0%
TAGGTCTTGGAGCAAAATGA+TGG - chr5_3:19507668-19507687 None:intergenic 40.0%
AATAGCCACCTTCACATCAA+GGG - chr5_3:19507805-19507824 None:intergenic 40.0%
TAATAGCCACCTTCACATCA+AGG - chr5_3:19507806-19507825 None:intergenic 40.0%
TATTTCATGCAGATCACTGG+TGG + chr5_3:19505870-19505889 Msa0803960:exon 40.0%
GGATAATCCTTTACCCAATG+AGG + chr5_3:19505941-19505960 Msa0803960:CDS 40.0%
! AACCTTCTTTTCCTTTTGCG+AGG + chr5_3:19506042-19506061 Msa0803960:CDS 40.0%
AACCTCGCAAAAGGAAAAGA+AGG - chr5_3:19506047-19506066 None:intergenic 40.0%
AAGAAGGTGAAGAATACCTG+TGG - chr5_3:19506074-19506093 None:intergenic 40.0%
TTAATCGAGAATGTGGAACC+TGG + chr5_3:19506240-19506259 Msa0803960:CDS 40.0%
!! CTCTGAGACTATAATCTCCA+CGG - chr5_3:19506536-19506555 None:intergenic 40.0%
ATAGTCTCAGAGCATGTCTT+TGG + chr5_3:19506544-19506563 Msa0803960:CDS 40.0%
GGTTCTGTTTATGGTGAAGA+TGG + chr5_3:19506565-19506584 Msa0803960:CDS 40.0%
TCTGTTTATGGTGAAGATGG+CGG + chr5_3:19506568-19506587 Msa0803960:CDS 40.0%
TAACATCTGCACCTGAAATC+TGG - chr5_3:19507234-19507253 None:intergenic 40.0%
TGAGCTGCAAATGTTTGATC+AGG - chr5_3:19507316-19507335 None:intergenic 40.0%
AGTTCTTCCTTCAAAACAGG+AGG + chr5_3:19507420-19507439 Msa0803960:three_prime_UTR 40.0%
GTACCAATAAACGGTACAAC+GGG - chr5_3:19507646-19507665 None:intergenic 40.0%
GGTACCAATAAACGGTACAA+CGG - chr5_3:19507647-19507666 None:intergenic 40.0%
TAGGTCTTGGAGCAAAATGA+TGG - chr5_3:19507668-19507687 None:intergenic 40.0%
AATAGCCACCTTCACATCAA+GGG - chr5_3:19507805-19507824 None:intergenic 40.0%
TAATAGCCACCTTCACATCA+AGG - chr5_3:19507806-19507825 None:intergenic 40.0%
TGTGGTAGAAACCTCGCAAA+AGG - chr5_3:19506056-19506075 None:intergenic 45.0%
! TTTTGCGAGGTTTCTACCAC+AGG + chr5_3:19506055-19506074 Msa0803960:CDS 45.0%
CAGGTCAGTATAATCCAGCT+GGG + chr5_3:19506263-19506282 Msa0803960:intron 45.0%
AGTTTAACACAGCCCAACCA+CGG - chr5_3:19506666-19506685 None:intergenic 45.0%
! TATGGATTATGGTGTCCACG+AGG + chr5_3:19507049-19507068 Msa0803960:intron 45.0%
! ATGGATTATGGTGTCCACGA+GGG + chr5_3:19507050-19507069 Msa0803960:intron 45.0%
!! TGTTTCTGGGACCAGATTTC+AGG + chr5_3:19507220-19507239 Msa0803960:intron 45.0%
AAACTGCACAAGCAAGCTGA+TGG + chr5_3:19507359-19507378 Msa0803960:CDS 45.0%
TCTTCCTTCAAAACAGGAGG+AGG + chr5_3:19507423-19507442 Msa0803960:three_prime_UTR 45.0%
! TGTGTCTGTTAGTCTACAGG+AGG - chr5_3:19507560-19507579 None:intergenic 45.0%
TGTGGTAGAAACCTCGCAAA+AGG - chr5_3:19506056-19506075 None:intergenic 45.0%
! TTTTGCGAGGTTTCTACCAC+AGG + chr5_3:19506055-19506074 Msa0803960:CDS 45.0%
CAGGTCAGTATAATCCAGCT+GGG + chr5_3:19506263-19506282 Msa0803960:intron 45.0%
AGTTTAACACAGCCCAACCA+CGG - chr5_3:19506666-19506685 None:intergenic 45.0%
! TATGGATTATGGTGTCCACG+AGG + chr5_3:19507049-19507068 Msa0803960:intron 45.0%
! ATGGATTATGGTGTCCACGA+GGG + chr5_3:19507050-19507069 Msa0803960:intron 45.0%
!! TGTTTCTGGGACCAGATTTC+AGG + chr5_3:19507220-19507239 Msa0803960:intron 45.0%
AAACTGCACAAGCAAGCTGA+TGG + chr5_3:19507359-19507378 Msa0803960:CDS 45.0%
TCTTCCTTCAAAACAGGAGG+AGG + chr5_3:19507423-19507442 Msa0803960:three_prime_UTR 45.0%
! TGTGTCTGTTAGTCTACAGG+AGG - chr5_3:19507560-19507579 None:intergenic 45.0%
!! GAGCGCTTCTGAGATTGTCT+AGG - chr5_3:19505771-19505790 None:intergenic 50.0%
CCAGTGGCTGAGTTTCTTGT+CGG + chr5_3:19505794-19505813 Msa0803960:five_prime_UTR 50.0%
CAGTGGCTGAGTTTCTTGTC+GGG + chr5_3:19505795-19505814 Msa0803960:five_prime_UTR 50.0%
AGTGGCTGAGTTTCTTGTCG+GGG + chr5_3:19505796-19505815 Msa0803960:five_prime_UTR 50.0%
GCAAGCACCTCATTGGGTAA+AGG - chr5_3:19505951-19505970 None:intergenic 50.0%
GCTTCAGCAAGCACCTCATT+GGG - chr5_3:19505957-19505976 None:intergenic 50.0%
TGCTTCAGCAAGCACCTCAT+TGG - chr5_3:19505958-19505977 None:intergenic 50.0%
CTGGATTATACTGACCTGCC+AGG - chr5_3:19506261-19506280 None:intergenic 50.0%
GCAGGTCAGTATAATCCAGC+TGG + chr5_3:19506262-19506281 Msa0803960:intron 50.0%
CACGGTAGTGTTTGTCACAG+TGG - chr5_3:19506518-19506537 None:intergenic 50.0%
CACTGTGACAAACACTACCG+TGG + chr5_3:19506516-19506535 Msa0803960:CDS 50.0%
GAGGGCAATCTCCTTAAGGA+CGG + chr5_3:19507068-19507087 Msa0803960:intron 50.0%
GTATTTGATCCCAGCAGCAC+CGG + chr5_3:19507256-19507275 Msa0803960:CDS 50.0%
AACCTTCCCTCCACTTGTAC+CGG - chr5_3:19507278-19507297 None:intergenic 50.0%
GGAGGGAAGGTTGTGATATC+TGG + chr5_3:19507286-19507305 Msa0803960:CDS 50.0%
TGCACAAGCAAGCTGATGGA+TGG + chr5_3:19507363-19507382 Msa0803960:exon 50.0%
! CAAGCAAGCTGATGGATGGA+TGG + chr5_3:19507367-19507386 Msa0803960:exon 50.0%
GCTCCCGTTGTACCGTTTAT+TGG + chr5_3:19507640-19507659 Msa0803960:three_prime_UTR 50.0%
CTAGTTCGCCCTTGATGTGA+AGG + chr5_3:19507794-19507813 Msa0803960:three_prime_UTR 50.0%
!! GAGCGCTTCTGAGATTGTCT+AGG - chr5_3:19505771-19505790 None:intergenic 50.0%
CCAGTGGCTGAGTTTCTTGT+CGG + chr5_3:19505794-19505813 Msa0803960:five_prime_UTR 50.0%
CAGTGGCTGAGTTTCTTGTC+GGG + chr5_3:19505795-19505814 Msa0803960:five_prime_UTR 50.0%
AGTGGCTGAGTTTCTTGTCG+GGG + chr5_3:19505796-19505815 Msa0803960:five_prime_UTR 50.0%
GCAAGCACCTCATTGGGTAA+AGG - chr5_3:19505951-19505970 None:intergenic 50.0%
GCTTCAGCAAGCACCTCATT+GGG - chr5_3:19505957-19505976 None:intergenic 50.0%
TGCTTCAGCAAGCACCTCAT+TGG - chr5_3:19505958-19505977 None:intergenic 50.0%
CTGGATTATACTGACCTGCC+AGG - chr5_3:19506261-19506280 None:intergenic 50.0%
GCAGGTCAGTATAATCCAGC+TGG + chr5_3:19506262-19506281 Msa0803960:intron 50.0%
CACGGTAGTGTTTGTCACAG+TGG - chr5_3:19506518-19506537 None:intergenic 50.0%
CACTGTGACAAACACTACCG+TGG + chr5_3:19506516-19506535 Msa0803960:CDS 50.0%
GAGGGCAATCTCCTTAAGGA+CGG + chr5_3:19507068-19507087 Msa0803960:intron 50.0%
GTATTTGATCCCAGCAGCAC+CGG + chr5_3:19507256-19507275 Msa0803960:CDS 50.0%
AACCTTCCCTCCACTTGTAC+CGG - chr5_3:19507278-19507297 None:intergenic 50.0%
GGAGGGAAGGTTGTGATATC+TGG + chr5_3:19507286-19507305 Msa0803960:CDS 50.0%
TGCACAAGCAAGCTGATGGA+TGG + chr5_3:19507363-19507382 Msa0803960:exon 50.0%
! CAAGCAAGCTGATGGATGGA+TGG + chr5_3:19507367-19507386 Msa0803960:exon 50.0%
GCTCCCGTTGTACCGTTTAT+TGG + chr5_3:19507640-19507659 Msa0803960:three_prime_UTR 50.0%
CTAGTTCGCCCTTGATGTGA+AGG + chr5_3:19507794-19507813 Msa0803960:three_prime_UTR 50.0%
CCGACAAGAAACTCAGCCAC+TGG - chr5_3:19505797-19505816 None:intergenic 55.0%
TCGAGAATGTGGAACCTGGC+AGG + chr5_3:19506244-19506263 Msa0803960:CDS 55.0%
! AAAAGGCGCATACTCCCAGC+TGG - chr5_3:19506280-19506299 None:intergenic 55.0%
CCTTAAGGAGATTGCCCTCG+TGG - chr5_3:19507067-19507086 None:intergenic 55.0%
CCACGAGGGCAATCTCCTTA+AGG + chr5_3:19507064-19507083 Msa0803960:intron 55.0%
!! GGCACCTCCTCCTGTTTTGA+AGG - chr5_3:19507430-19507449 None:intergenic 55.0%
!! ACAGGAGGAGGTGCCATTAG+TGG + chr5_3:19507435-19507454 Msa0803960:three_prime_UTR 55.0%
!! GAGGAGGTGCCATTAGTGGT+TGG + chr5_3:19507439-19507458 Msa0803960:three_prime_UTR 55.0%
TGTCTCTCTCGAAAGGGCTG+TGG + chr5_3:19507615-19507634 Msa0803960:three_prime_UTR 55.0%
GTCTCTCTCGAAAGGGCTGT+GGG + chr5_3:19507616-19507635 Msa0803960:three_prime_UTR 55.0%
GTTCGCCCTTGATGTGAAGG+TGG + chr5_3:19507797-19507816 Msa0803960:three_prime_UTR 55.0%
CCGACAAGAAACTCAGCCAC+TGG - chr5_3:19505797-19505816 None:intergenic 55.0%
TCGAGAATGTGGAACCTGGC+AGG + chr5_3:19506244-19506263 Msa0803960:CDS 55.0%
! AAAAGGCGCATACTCCCAGC+TGG - chr5_3:19506280-19506299 None:intergenic 55.0%
CCTTAAGGAGATTGCCCTCG+TGG - chr5_3:19507067-19507086 None:intergenic 55.0%
CCACGAGGGCAATCTCCTTA+AGG + chr5_3:19507064-19507083 Msa0803960:intron 55.0%
!! GGCACCTCCTCCTGTTTTGA+AGG - chr5_3:19507430-19507449 None:intergenic 55.0%
!! ACAGGAGGAGGTGCCATTAG+TGG + chr5_3:19507435-19507454 Msa0803960:three_prime_UTR 55.0%
!! GAGGAGGTGCCATTAGTGGT+TGG + chr5_3:19507439-19507458 Msa0803960:three_prime_UTR 55.0%
TGTCTCTCTCGAAAGGGCTG+TGG + chr5_3:19507615-19507634 Msa0803960:three_prime_UTR 55.0%
GTCTCTCTCGAAAGGGCTGT+GGG + chr5_3:19507616-19507635 Msa0803960:three_prime_UTR 55.0%
GTTCGCCCTTGATGTGAAGG+TGG + chr5_3:19507797-19507816 Msa0803960:three_prime_UTR 55.0%
!! CTCAGAAGCGCTCATGCCAG+TGG + chr5_3:19505778-19505797 Msa0803960:five_prime_UTR 60.0%
!! CCACTTGTACCGGTGCTGCT+GGG - chr5_3:19507268-19507287 None:intergenic 60.0%
!! TCCACTTGTACCGGTGCTGC+TGG - chr5_3:19507269-19507288 None:intergenic 60.0%
!! AGCAGCACCGGTACAAGTGG+AGG + chr5_3:19507268-19507287 Msa0803960:CDS 60.0%
!! GCAGCACCGGTACAAGTGGA+GGG + chr5_3:19507269-19507288 Msa0803960:CDS 60.0%
CACCGGTACAAGTGGAGGGA+AGG + chr5_3:19507273-19507292 Msa0803960:CDS 60.0%
!! CTCAGAAGCGCTCATGCCAG+TGG + chr5_3:19505778-19505797 Msa0803960:five_prime_UTR 60.0%
!! CCACTTGTACCGGTGCTGCT+GGG - chr5_3:19507268-19507287 None:intergenic 60.0%
!! TCCACTTGTACCGGTGCTGC+TGG - chr5_3:19507269-19507288 None:intergenic 60.0%
!! AGCAGCACCGGTACAAGTGG+AGG + chr5_3:19507268-19507287 Msa0803960:CDS 60.0%
!! GCAGCACCGGTACAAGTGGA+GGG + chr5_3:19507269-19507288 Msa0803960:CDS 60.0%
CACCGGTACAAGTGGAGGGA+AGG + chr5_3:19507273-19507292 Msa0803960:CDS 60.0%
!! CCCAGCAGCACCGGTACAAG+TGG + chr5_3:19507265-19507284 Msa0803960:CDS 65.0%
!! CCCAGCAGCACCGGTACAAG+TGG + chr5_3:19507265-19507284 Msa0803960:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 19505645 19507970 19505645 ID=Msa0803960;Name=Msa0803960
chr5_3 mRNA 19505645 19507970 19505645 ID=Msa0803960-mRNA-1;Parent=Msa0803960;Name=Msa0803960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=231|1|1|1|1|1|4|592|179
chr5_3 exon 19505645 19506076 19505645 ID=Msa0803960-mRNA-1:exon:7982;Parent=Msa0803960-mRNA-1
chr5_3 exon 19506183 19506265 19506183 ID=Msa0803960-mRNA-1:exon:7983;Parent=Msa0803960-mRNA-1
chr5_3 exon 19506501 19506612 19506501 ID=Msa0803960-mRNA-1:exon:7984;Parent=Msa0803960-mRNA-1
chr5_3 exon 19507235 19507970 19507235 ID=Msa0803960-mRNA-1:exon:7985;Parent=Msa0803960-mRNA-1
chr5_3 five_prime_UTR 19505645 19505875 19505645 ID=Msa0803960-mRNA-1:five_prime_utr;Parent=Msa0803960-mRNA-1
chr5_3 CDS 19505876 19506076 19505876 ID=Msa0803960-mRNA-1:cds;Parent=Msa0803960-mRNA-1
chr5_3 CDS 19506183 19506265 19506183 ID=Msa0803960-mRNA-1:cds;Parent=Msa0803960-mRNA-1
chr5_3 CDS 19506501 19506612 19506501 ID=Msa0803960-mRNA-1:cds;Parent=Msa0803960-mRNA-1
chr5_3 CDS 19507235 19507378 19507235 ID=Msa0803960-mRNA-1:cds;Parent=Msa0803960-mRNA-1
chr5_3 three_prime_UTR 19507379 19507970 19507379 ID=Msa0803960-mRNA-1:three_prime_utr;Parent=Msa0803960-mRNA-1
Gene Sequence

>Msa0803960

ATGCAGATCACTGGTGGATACAGATGCGTAGAAAATGCTCTACGTAAAATCACTTCTATAATTAGGGATAATCCTTTACCCAATGAGGTGCTTGCTGAAGCAAGAGTCAAACCAAGTTTTCCTTTAAATAAAGATACTGTTAGGAGTAAGTTCATTACCCGCAAAAAACCTTCTTTTCCTTTTGCGAGGTTTCTACCACAGAATGCAGGGGTGTATCAAACTAAAAAGGTCACAGAAAATGTGGAACCACATAAAAATTTAATCGAGAATGTGGAACCTGGCAGAGGAAACATTGTTGCCACTGTGACAAACACTACCGTGGAGATTATAGTCTCAGAGCATGTCTTTGGTTCTGTTTATGGTGAAGATGGCGGCAATTTAGATCGAATTAGACAGATTTCAGGTGCAGATGTTACTGTATTTGATCCCAGCAGCACCGGTACAAGTGGAGGGAAGGTTGTGATATCTGGAACACCTGATCAAACATTTGCAGCTCAGAGTTTGCTTCAAGCTTTCATTCAAACTGCACAAGCAAGCTGA
Protein sequence

>Msa0803960

MQITGGYRCVENALRKITSIIRDNPLPNEVLAEARVKPSFPLNKDTVRSKFITRKKPSFPFARFLPQNAGVYQTKKVTENVEPHKNLIENVEPGRGNIVATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQAFIQTAQAS*