Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804880 | sp|P93218|GP3_SOLLC | 47.887 | 71 | 31 | 2 | 55 | 120 | 408 | 477 | 3.32e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0112750 | Msa0804880 | 0.807501 | 4.901831e-50 | -8.615850e-47 |
| Msa0741570 | Msa0804880 | 0.802701 | 4.952554e-49 | -8.615850e-47 |
| Msa0804880 | Msa0848030 | 0.938435 | 6.758816e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804880 | MtrunA17_Chr5g0413591 | 61.538 | 52 | 19 | 1 | 58 | 109 | 414 | 464 | 2.42e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGATTTCCCTTTCTT+TGG | 0.179340 | 5_3:-21257550 | None:intergenic |
| GGGAAATCAAAGATGCTAAA+AGG | 0.238157 | 5_3:+21257559 | Msa0804880:CDS |
| TTTGATTTCCCTTTCTTTGG+TGG | 0.371781 | 5_3:-21257547 | None:intergenic |
| TTCTCTTATGAAGCTGCAAC+AGG | 0.376028 | 5_3:+21257896 | Msa0804880:intron |
| GGAAATCAAAGATGCTAAAA+GGG | 0.453229 | 5_3:+21257560 | Msa0804880:CDS |
| TATGAAGCTGCAACAGGAGG+TGG | 0.455337 | 5_3:+21257902 | Msa0804880:intron |
| ATGAATGTTTGACGTTGAAA+AGG | 0.461949 | 5_3:-21259323 | None:intergenic |
| TTTCCCTTTCTTTGGTGGCA+TGG | 0.469190 | 5_3:-21257542 | None:intergenic |
| CAACCATGCCACCAAAGAAA+GGG | 0.490895 | 5_3:+21257539 | None:intergenic |
| ATGCTAAAAGGGAAGAACTT+AGG | 0.526270 | 5_3:+21257571 | Msa0804880:CDS |
| ACAACCATGCCACCAAAGAA+AGG | 0.529271 | 5_3:+21257538 | None:intergenic |
| AGAGAGAGAATGTTGACAGA+AGG | 0.549188 | 5_3:+21259217 | Msa0804880:CDS |
| TGAATGTTTGACGTTGAAAA+GGG | 0.551975 | 5_3:-21259322 | None:intergenic |
| GGAGTCTCTAGGAGAGTGTG+AGG | 0.574945 | 5_3:+21259409 | Msa0804880:CDS |
| GTGCATGGTTCAAAACTGCA+TGG | 0.588812 | 5_3:-21259145 | None:intergenic |
| AGAAGGTGTGGTGATGCAAA+TGG | 0.601023 | 5_3:+21259234 | Msa0804880:CDS |
| AATATGATGAGGGAGTCTCT+AGG | 0.602757 | 5_3:+21259398 | Msa0804880:CDS |
| TCTTATGAAGCTGCAACAGG+AGG | 0.628351 | 5_3:+21257899 | Msa0804880:intron |
| GTGGAATTACTATTGAAGCT+CGG | 0.640440 | 5_3:+21257921 | Msa0804880:CDS |
| GAGAATGTTGACAGAAGGTG+TGG | 0.641647 | 5_3:+21259222 | Msa0804880:CDS |
| GCTCGTGTTGAATATGATGA+GGG | 0.678381 | 5_3:+21259388 | Msa0804880:CDS |
| TGCTCGTGTTGAATATGATG+AGG | 0.679787 | 5_3:+21259387 | Msa0804880:CDS |
| GAGTCTCTAGGAGAGTGTGA+GGG | 0.719600 | 5_3:+21259410 | Msa0804880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAAAAAAATTAATTT+TGG | - | chr5_3:21258139-21258158 | None:intergenic | 0.0% |
| !!! | ATTTTTTTAAAATTAAATTT+TGG | + | chr5_3:21258145-21258164 | Msa0804880:intron | 0.0% |
| !!! | AATTTTAAAAAAATTAATTT+TGG | - | chr5_3:21258139-21258158 | None:intergenic | 0.0% |
| !!! | ATTTTTTTAAAATTAAATTT+TGG | + | chr5_3:21258145-21258164 | Msa0804880:intron | 0.0% |
| !! | AAAAATAAAAATTAATGTAG+AGG | - | chr5_3:21258222-21258241 | None:intergenic | 10.0% |
| !! | AATTAATAAGTTACAATTAT+CGG | + | chr5_3:21258376-21258395 | Msa0804880:intron | 10.0% |
| !!! | GTTTTTAATGTTAAATAATA+TGG | - | chr5_3:21259055-21259074 | None:intergenic | 10.0% |
| !! | AAAAATAAAAATTAATGTAG+AGG | - | chr5_3:21258222-21258241 | None:intergenic | 10.0% |
| !! | AATTAATAAGTTACAATTAT+CGG | + | chr5_3:21258376-21258395 | Msa0804880:intron | 10.0% |
| !!! | GTTTTTAATGTTAAATAATA+TGG | - | chr5_3:21259055-21259074 | None:intergenic | 10.0% |
| !!! | ATAATTTCTAGTTTTCTATA+AGG | - | chr5_3:21257762-21257781 | None:intergenic | 15.0% |
| !!! | AAACATAAGATTACTTTTTT+TGG | - | chr5_3:21257876-21257895 | None:intergenic | 15.0% |
| !!! | TCTAGTTTTTTTTTTTTTGT+TGG | + | chr5_3:21258005-21258024 | Msa0804880:intron | 15.0% |
| !!! | AAAAATGATCTAATATTTTG+TGG | - | chr5_3:21258520-21258539 | None:intergenic | 15.0% |
| !! | ATTATAAAGTACGTATTAAA+TGG | - | chr5_3:21258647-21258666 | None:intergenic | 15.0% |
| !!! | TAAAACCATTTTAACTTTAT+GGG | + | chr5_3:21258721-21258740 | Msa0804880:intron | 15.0% |
| !!! | TACATAATTTGTTTTTGTAA+AGG | + | chr5_3:21259000-21259019 | Msa0804880:intron | 15.0% |
| !!! | TACATGATTAGTTTTTTTAA+AGG | + | chr5_3:21259105-21259124 | Msa0804880:intron | 15.0% |
| !!! | ATAATTTCTAGTTTTCTATA+AGG | - | chr5_3:21257762-21257781 | None:intergenic | 15.0% |
| !!! | AAACATAAGATTACTTTTTT+TGG | - | chr5_3:21257876-21257895 | None:intergenic | 15.0% |
| !!! | TCTAGTTTTTTTTTTTTTGT+TGG | + | chr5_3:21258005-21258024 | Msa0804880:intron | 15.0% |
| !!! | AAAAATGATCTAATATTTTG+TGG | - | chr5_3:21258520-21258539 | None:intergenic | 15.0% |
| !! | ATTATAAAGTACGTATTAAA+TGG | - | chr5_3:21258647-21258666 | None:intergenic | 15.0% |
| !!! | TAAAACCATTTTAACTTTAT+GGG | + | chr5_3:21258721-21258740 | Msa0804880:intron | 15.0% |
| !!! | TACATAATTTGTTTTTGTAA+AGG | + | chr5_3:21259000-21259019 | Msa0804880:intron | 15.0% |
| !!! | TACATGATTAGTTTTTTTAA+AGG | + | chr5_3:21259105-21259124 | Msa0804880:intron | 15.0% |
| !!! | CTTTTTTTGGTCATTAATAT+TGG | - | chr5_3:21257863-21257882 | None:intergenic | 20.0% |
| !! | TGCATTGTTTGAATTAAAAT+TGG | - | chr5_3:21258049-21258068 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGAAAAGACCT+AGG | + | chr5_3:21258232-21258251 | Msa0804880:intron | 20.0% |
| !! | ATTTACTAAATAAGAACACA+CGG | + | chr5_3:21258349-21258368 | Msa0804880:intron | 20.0% |
| !!! | GTAAAACCATTTTAACTTTA+TGG | + | chr5_3:21258720-21258739 | Msa0804880:intron | 20.0% |
| !!! | CTTTTTTTGGTCATTAATAT+TGG | - | chr5_3:21257863-21257882 | None:intergenic | 20.0% |
| !! | TGCATTGTTTGAATTAAAAT+TGG | - | chr5_3:21258049-21258068 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGAAAAGACCT+AGG | + | chr5_3:21258232-21258251 | Msa0804880:intron | 20.0% |
| !! | ATTTACTAAATAAGAACACA+CGG | + | chr5_3:21258349-21258368 | Msa0804880:intron | 20.0% |
| !!! | GTAAAACCATTTTAACTTTA+TGG | + | chr5_3:21258720-21258739 | Msa0804880:intron | 20.0% |
| !! | TAGTCTTAGAAGTTAAAACA+TGG | - | chr5_3:21257671-21257690 | None:intergenic | 25.0% |
| !!! | CTATGTTATTTCTCTGAATT+TGG | + | chr5_3:21257725-21257744 | Msa0804880:intron | 25.0% |
| !!! | AGTCATTTTTCATTTAGTGA+TGG | + | chr5_3:21257818-21257837 | Msa0804880:intron | 25.0% |
| ! | ATAATGTGAAGTTCTCAAAA+TGG | + | chr5_3:21258293-21258312 | Msa0804880:intron | 25.0% |
| !! | GTGTGTTCTTATTTAGTAAA+TGG | - | chr5_3:21258350-21258369 | None:intergenic | 25.0% |
| ! | TCATTTGTAGGAAATAAAAC+TGG | + | chr5_3:21258399-21258418 | Msa0804880:intron | 25.0% |
| ! | GTTCAATAGAGATTAAAAGT+TGG | - | chr5_3:21258914-21258933 | None:intergenic | 25.0% |
| ! | AATAATATGGGTTTAGTGAT+GGG | - | chr5_3:21259042-21259061 | None:intergenic | 25.0% |
| ! | AAATAATATGGGTTTAGTGA+TGG | - | chr5_3:21259043-21259062 | None:intergenic | 25.0% |
| !! | TAGTCTTAGAAGTTAAAACA+TGG | - | chr5_3:21257671-21257690 | None:intergenic | 25.0% |
| !!! | CTATGTTATTTCTCTGAATT+TGG | + | chr5_3:21257725-21257744 | Msa0804880:intron | 25.0% |
| !!! | AGTCATTTTTCATTTAGTGA+TGG | + | chr5_3:21257818-21257837 | Msa0804880:intron | 25.0% |
| ! | ATAATGTGAAGTTCTCAAAA+TGG | + | chr5_3:21258293-21258312 | Msa0804880:intron | 25.0% |
| !! | GTGTGTTCTTATTTAGTAAA+TGG | - | chr5_3:21258350-21258369 | None:intergenic | 25.0% |
| ! | TCATTTGTAGGAAATAAAAC+TGG | + | chr5_3:21258399-21258418 | Msa0804880:intron | 25.0% |
| ! | GTTCAATAGAGATTAAAAGT+TGG | - | chr5_3:21258914-21258933 | None:intergenic | 25.0% |
| ! | AATAATATGGGTTTAGTGAT+GGG | - | chr5_3:21259042-21259061 | None:intergenic | 25.0% |
| ! | AAATAATATGGGTTTAGTGA+TGG | - | chr5_3:21259043-21259062 | None:intergenic | 25.0% |
| ! | ATCTTTGATTTCCCTTTCTT+TGG | - | chr5_3:21257553-21257572 | None:intergenic | 30.0% |
| GGAAATCAAAGATGCTAAAA+GGG | + | chr5_3:21257560-21257579 | Msa0804880:CDS | 30.0% | |
| CATTACATGGTTGTTAACTT+GGG | - | chr5_3:21257608-21257627 | None:intergenic | 30.0% | |
| ACATTACATGGTTGTTAACT+TGG | - | chr5_3:21257609-21257628 | None:intergenic | 30.0% | |
| GGATCAAAGTTTACATTACA+TGG | - | chr5_3:21257621-21257640 | None:intergenic | 30.0% | |
| !! | ATGGACCATAGAGTTTTAAT+TGG | + | chr5_3:21257837-21257856 | Msa0804880:intron | 30.0% |
| ATTGGCCAATTAAAACTCTA+TGG | - | chr5_3:21257845-21257864 | None:intergenic | 30.0% | |
| AAAAACTAGAGAAGCTAGTA+GGG | - | chr5_3:21257995-21258014 | None:intergenic | 30.0% | |
| AAAAAACTAGAGAAGCTAGT+AGG | - | chr5_3:21257996-21258015 | None:intergenic | 30.0% | |
| AAGAGTCAACATATTGTGTT+TGG | - | chr5_3:21258112-21258131 | None:intergenic | 30.0% | |
| TACATGTCATTGTCAAATGA+GGG | - | chr5_3:21258198-21258217 | None:intergenic | 30.0% | |
| TTACATGTCATTGTCAAATG+AGG | - | chr5_3:21258199-21258218 | None:intergenic | 30.0% | |
| TACAATTATCGGTCATTTGT+AGG | + | chr5_3:21258387-21258406 | Msa0804880:intron | 30.0% | |
| ATCAGCCCATAAAGTTAAAA+TGG | - | chr5_3:21258729-21258748 | None:intergenic | 30.0% | |
| CAATAGAGATTAAAAGTTGG+AGG | - | chr5_3:21258911-21258930 | None:intergenic | 30.0% | |
| CACAAAAAGTAATTAGTGCA+TGG | - | chr5_3:21259163-21259182 | None:intergenic | 30.0% | |
| !!! | CATGCACTAATTACTTTTTG+TGG | + | chr5_3:21259161-21259180 | Msa0804880:CDS | 30.0% |
| !! | TTTTTGTGGTTGATATTTGC+AGG | + | chr5_3:21259175-21259194 | Msa0804880:CDS | 30.0% |
| TTCTGTAAAAACGACATCTT+TGG | - | chr5_3:21259280-21259299 | None:intergenic | 30.0% | |
| TGAATGTTTGACGTTGAAAA+GGG | - | chr5_3:21259325-21259344 | None:intergenic | 30.0% | |
| ATGAATGTTTGACGTTGAAA+AGG | - | chr5_3:21259326-21259345 | None:intergenic | 30.0% | |
| ! | ATCTTTGATTTCCCTTTCTT+TGG | - | chr5_3:21257553-21257572 | None:intergenic | 30.0% |
| GGAAATCAAAGATGCTAAAA+GGG | + | chr5_3:21257560-21257579 | Msa0804880:CDS | 30.0% | |
| CATTACATGGTTGTTAACTT+GGG | - | chr5_3:21257608-21257627 | None:intergenic | 30.0% | |
| ACATTACATGGTTGTTAACT+TGG | - | chr5_3:21257609-21257628 | None:intergenic | 30.0% | |
| GGATCAAAGTTTACATTACA+TGG | - | chr5_3:21257621-21257640 | None:intergenic | 30.0% | |
| !! | ATGGACCATAGAGTTTTAAT+TGG | + | chr5_3:21257837-21257856 | Msa0804880:intron | 30.0% |
| ATTGGCCAATTAAAACTCTA+TGG | - | chr5_3:21257845-21257864 | None:intergenic | 30.0% | |
| AAAAACTAGAGAAGCTAGTA+GGG | - | chr5_3:21257995-21258014 | None:intergenic | 30.0% | |
| AAAAAACTAGAGAAGCTAGT+AGG | - | chr5_3:21257996-21258015 | None:intergenic | 30.0% | |
| AAGAGTCAACATATTGTGTT+TGG | - | chr5_3:21258112-21258131 | None:intergenic | 30.0% | |
| TACATGTCATTGTCAAATGA+GGG | - | chr5_3:21258198-21258217 | None:intergenic | 30.0% | |
| TTACATGTCATTGTCAAATG+AGG | - | chr5_3:21258199-21258218 | None:intergenic | 30.0% | |
| TACAATTATCGGTCATTTGT+AGG | + | chr5_3:21258387-21258406 | Msa0804880:intron | 30.0% | |
| ATCAGCCCATAAAGTTAAAA+TGG | - | chr5_3:21258729-21258748 | None:intergenic | 30.0% | |
| CAATAGAGATTAAAAGTTGG+AGG | - | chr5_3:21258911-21258930 | None:intergenic | 30.0% | |
| CACAAAAAGTAATTAGTGCA+TGG | - | chr5_3:21259163-21259182 | None:intergenic | 30.0% | |
| !!! | CATGCACTAATTACTTTTTG+TGG | + | chr5_3:21259161-21259180 | Msa0804880:CDS | 30.0% |
| !! | TTTTTGTGGTTGATATTTGC+AGG | + | chr5_3:21259175-21259194 | Msa0804880:CDS | 30.0% |
| TTCTGTAAAAACGACATCTT+TGG | - | chr5_3:21259280-21259299 | None:intergenic | 30.0% | |
| TGAATGTTTGACGTTGAAAA+GGG | - | chr5_3:21259325-21259344 | None:intergenic | 30.0% | |
| ATGAATGTTTGACGTTGAAA+AGG | - | chr5_3:21259326-21259345 | None:intergenic | 30.0% | |
| ! | TTTGATTTCCCTTTCTTTGG+TGG | - | chr5_3:21257550-21257569 | None:intergenic | 35.0% |
| GGGAAATCAAAGATGCTAAA+AGG | + | chr5_3:21257559-21257578 | Msa0804880:CDS | 35.0% | |
| ATGCTAAAAGGGAAGAACTT+AGG | + | chr5_3:21257571-21257590 | Msa0804880:CDS | 35.0% | |
| GTGGAATTACTATTGAAGCT+CGG | + | chr5_3:21257921-21257940 | Msa0804880:CDS | 35.0% | |
| AAGTAATGTAGTGTACTCCT+AGG | - | chr5_3:21258252-21258271 | None:intergenic | 35.0% | |
| ! | TTTGATTTCCCTTTCTTTGG+TGG | - | chr5_3:21257550-21257569 | None:intergenic | 35.0% |
| GGGAAATCAAAGATGCTAAA+AGG | + | chr5_3:21257559-21257578 | Msa0804880:CDS | 35.0% | |
| ATGCTAAAAGGGAAGAACTT+AGG | + | chr5_3:21257571-21257590 | Msa0804880:CDS | 35.0% | |
| GTGGAATTACTATTGAAGCT+CGG | + | chr5_3:21257921-21257940 | Msa0804880:CDS | 35.0% | |
| AAGTAATGTAGTGTACTCCT+AGG | - | chr5_3:21258252-21258271 | None:intergenic | 35.0% | |
| ! | TTACTGACTAGAAGAGAGAG+TGG | - | chr5_3:21257642-21257661 | None:intergenic | 40.0% |
| TTCTCTTATGAAGCTGCAAC+AGG | + | chr5_3:21257896-21257915 | Msa0804880:intron | 40.0% | |
| ! | ACGTTTGTTGACCAACCTTT+GGG | + | chr5_3:21257948-21257967 | Msa0804880:intron | 40.0% |
| ! | TTGTCAAATGAGGGTGTACA+TGG | - | chr5_3:21258189-21258208 | None:intergenic | 40.0% |
| CGTCATTAGAGTCACAAGTT+GGG | - | chr5_3:21258786-21258805 | None:intergenic | 40.0% | |
| ACGTCATTAGAGTCACAAGT+TGG | - | chr5_3:21258787-21258806 | None:intergenic | 40.0% | |
| AACTTGTGACTCTAATGACG+TGG | + | chr5_3:21258786-21258805 | Msa0804880:intron | 40.0% | |
| CGTGGCAATTGGATATTCAA+TGG | + | chr5_3:21258804-21258823 | Msa0804880:intron | 40.0% | |
| ! | AATATGGGTTTAGTGATGGG+AGG | - | chr5_3:21259039-21259058 | None:intergenic | 40.0% |
| AGAGAGAGAATGTTGACAGA+AGG | + | chr5_3:21259217-21259236 | Msa0804880:CDS | 40.0% | |
| TGCTCGTGTTGAATATGATG+AGG | + | chr5_3:21259387-21259406 | Msa0804880:CDS | 40.0% | |
| GCTCGTGTTGAATATGATGA+GGG | + | chr5_3:21259388-21259407 | Msa0804880:CDS | 40.0% | |
| AATATGATGAGGGAGTCTCT+AGG | + | chr5_3:21259398-21259417 | Msa0804880:CDS | 40.0% | |
| ! | TTACTGACTAGAAGAGAGAG+TGG | - | chr5_3:21257642-21257661 | None:intergenic | 40.0% |
| TTCTCTTATGAAGCTGCAAC+AGG | + | chr5_3:21257896-21257915 | Msa0804880:intron | 40.0% | |
| ! | ACGTTTGTTGACCAACCTTT+GGG | + | chr5_3:21257948-21257967 | Msa0804880:intron | 40.0% |
| ! | TTGTCAAATGAGGGTGTACA+TGG | - | chr5_3:21258189-21258208 | None:intergenic | 40.0% |
| CGTCATTAGAGTCACAAGTT+GGG | - | chr5_3:21258786-21258805 | None:intergenic | 40.0% | |
| ACGTCATTAGAGTCACAAGT+TGG | - | chr5_3:21258787-21258806 | None:intergenic | 40.0% | |
| AACTTGTGACTCTAATGACG+TGG | + | chr5_3:21258786-21258805 | Msa0804880:intron | 40.0% | |
| CGTGGCAATTGGATATTCAA+TGG | + | chr5_3:21258804-21258823 | Msa0804880:intron | 40.0% | |
| ! | AATATGGGTTTAGTGATGGG+AGG | - | chr5_3:21259039-21259058 | None:intergenic | 40.0% |
| AGAGAGAGAATGTTGACAGA+AGG | + | chr5_3:21259217-21259236 | Msa0804880:CDS | 40.0% | |
| TGCTCGTGTTGAATATGATG+AGG | + | chr5_3:21259387-21259406 | Msa0804880:CDS | 40.0% | |
| GCTCGTGTTGAATATGATGA+GGG | + | chr5_3:21259388-21259407 | Msa0804880:CDS | 40.0% | |
| AATATGATGAGGGAGTCTCT+AGG | + | chr5_3:21259398-21259417 | Msa0804880:CDS | 40.0% | |
| TCTTATGAAGCTGCAACAGG+AGG | + | chr5_3:21257899-21257918 | Msa0804880:intron | 45.0% | |
| ! | CACGTTTGTTGACCAACCTT+TGG | + | chr5_3:21257947-21257966 | Msa0804880:intron | 45.0% |
| ! | ATGAGGGTGTACATGGACTT+TGG | - | chr5_3:21258182-21258201 | None:intergenic | 45.0% |
| GACTCTAATGACGTGGCAAT+TGG | + | chr5_3:21258793-21258812 | Msa0804880:intron | 45.0% | |
| GTGCATGGTTCAAAACTGCA+TGG | - | chr5_3:21259148-21259167 | None:intergenic | 45.0% | |
| GAGAATGTTGACAGAAGGTG+TGG | + | chr5_3:21259222-21259241 | Msa0804880:CDS | 45.0% | |
| ! | AGAAGGTGTGGTGATGCAAA+TGG | + | chr5_3:21259234-21259253 | Msa0804880:CDS | 45.0% |
| TCTTATGAAGCTGCAACAGG+AGG | + | chr5_3:21257899-21257918 | Msa0804880:intron | 45.0% | |
| ! | CACGTTTGTTGACCAACCTT+TGG | + | chr5_3:21257947-21257966 | Msa0804880:intron | 45.0% |
| ! | ATGAGGGTGTACATGGACTT+TGG | - | chr5_3:21258182-21258201 | None:intergenic | 45.0% |
| GACTCTAATGACGTGGCAAT+TGG | + | chr5_3:21258793-21258812 | Msa0804880:intron | 45.0% | |
| GTGCATGGTTCAAAACTGCA+TGG | - | chr5_3:21259148-21259167 | None:intergenic | 45.0% | |
| GAGAATGTTGACAGAAGGTG+TGG | + | chr5_3:21259222-21259241 | Msa0804880:CDS | 45.0% | |
| ! | AGAAGGTGTGGTGATGCAAA+TGG | + | chr5_3:21259234-21259253 | Msa0804880:CDS | 45.0% |
| !!! | TTTTTAATGTTAAATAATAT+GGG | - | chr5_3:21259054-21259073 | None:intergenic | 5.0% |
| !!! | TTTTTAATGTTAAATAATAT+GGG | - | chr5_3:21259054-21259073 | None:intergenic | 5.0% |
| TATGAAGCTGCAACAGGAGG+TGG | + | chr5_3:21257902-21257921 | Msa0804880:intron | 50.0% | |
| TGTTGACCAACCTTTGGGCA+TGG | + | chr5_3:21257953-21257972 | Msa0804880:intron | 50.0% | |
| GTTGACCAACCTTTGGGCAT+GGG | + | chr5_3:21257954-21257973 | Msa0804880:intron | 50.0% | |
| TATGAAGCTGCAACAGGAGG+TGG | + | chr5_3:21257902-21257921 | Msa0804880:intron | 50.0% | |
| TGTTGACCAACCTTTGGGCA+TGG | + | chr5_3:21257953-21257972 | Msa0804880:intron | 50.0% | |
| GTTGACCAACCTTTGGGCAT+GGG | + | chr5_3:21257954-21257973 | Msa0804880:intron | 50.0% | |
| TTCCACCCATGCCCAAAGGT+TGG | - | chr5_3:21257962-21257981 | None:intergenic | 55.0% | |
| CCAATTCCACCCATGCCCAA+AGG | - | chr5_3:21257966-21257985 | None:intergenic | 55.0% | |
| CCTTTGGGCATGGGTGGAAT+TGG | + | chr5_3:21257963-21257982 | Msa0804880:intron | 55.0% | |
| TTCCACCCATGCCCAAAGGT+TGG | - | chr5_3:21257962-21257981 | None:intergenic | 55.0% | |
| CCAATTCCACCCATGCCCAA+AGG | - | chr5_3:21257966-21257985 | None:intergenic | 55.0% | |
| CCTTTGGGCATGGGTGGAAT+TGG | + | chr5_3:21257963-21257982 | Msa0804880:intron | 55.0% | |
| GACCAACCTTTGGGCATGGG+TGG | + | chr5_3:21257957-21257976 | Msa0804880:intron | 60.0% | |
| GACCAACCTTTGGGCATGGG+TGG | + | chr5_3:21257957-21257976 | Msa0804880:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 21257544 | 21259429 | 21257544 | ID=Msa0804880;Name=Msa0804880 |
| chr5_3 | mRNA | 21257544 | 21259429 | 21257544 | ID=Msa0804880-mRNA-1;Parent=Msa0804880;Name=Msa0804880-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|0.33|0|0.33|3|0|130 |
| chr5_3 | exon | 21257544 | 21257592 | 21257544 | ID=Msa0804880-mRNA-1:exon:8444;Parent=Msa0804880-mRNA-1 |
| chr5_3 | exon | 21257909 | 21257949 | 21257909 | ID=Msa0804880-mRNA-1:exon:8445;Parent=Msa0804880-mRNA-1 |
| chr5_3 | exon | 21259127 | 21259429 | 21259127 | ID=Msa0804880-mRNA-1:exon:8446;Parent=Msa0804880-mRNA-1 |
| chr5_3 | CDS | 21257544 | 21257592 | 21257544 | ID=Msa0804880-mRNA-1:cds;Parent=Msa0804880-mRNA-1 |
| chr5_3 | CDS | 21257909 | 21257949 | 21257909 | ID=Msa0804880-mRNA-1:cds;Parent=Msa0804880-mRNA-1 |
| chr5_3 | CDS | 21259127 | 21259429 | 21259127 | ID=Msa0804880-mRNA-1:cds;Parent=Msa0804880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
