Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015400 | Msa0848030 | 0.801031 | 1.090924e-48 | -8.615850e-47 |
| Msa0112750 | Msa0848030 | 0.819895 | 9.135369e-53 | -8.615850e-47 |
| Msa0693380 | Msa0848030 | 0.803889 | 2.809644e-49 | -8.615850e-47 |
| Msa0804880 | Msa0848030 | 0.938435 | 6.758816e-99 | -8.615850e-47 |
| Msa0805080 | Msa0848030 | 0.816583 | 5.130839e-52 | -8.615850e-47 |
| Msa0131770 | Msa0848030 | 0.818178 | 2.244718e-52 | -8.615850e-47 |
| Msa0276920 | Msa0848030 | 0.810189 | 1.304257e-50 | -8.615850e-47 |
| Msa0316800 | Msa0848030 | 0.800748 | 1.245768e-48 | -8.615850e-47 |
| Msa0848030 | Msa0969450 | 0.800090 | 1.696710e-48 | -8.615850e-47 |
| Msa0848030 | Msa0969520 | 0.816334 | 5.835208e-52 | -8.615850e-47 |
| Msa0848030 | Msa1353470 | 0.827142 | 1.842107e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848030 | MtrunA17_Chr5g0413591 | 61.538 | 52 | 19 | 1 | 56 | 107 | 414 | 464 | 1.44e-12 | 63.2 |
| Msa0848030 | MtrunA17_Chr8g0365381 | 53.846 | 52 | 23 | 1 | 56 | 107 | 428 | 478 | 9.47e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGATTTCCCTTTCTT+TGG | 0.179340 | 5_4:-32319767 | None:intergenic |
| GGGAAATCAAAGATGCTAAA+AGG | 0.238157 | 5_4:+32319776 | Msa0848030:CDS |
| CACGTTTGTTGACCAACCTT+TGG | 0.299699 | 5_4:+32320164 | Msa0848030:CDS |
| ACATTACATGGTTGTTAACT+TGG | 0.324331 | 5_4:-32319823 | None:intergenic |
| CCTTTGGGCATGGGTGGAAT+TGG | 0.332720 | 5_4:+32320180 | Msa0848030:CDS |
| TTTGATTTCCCTTTCTTTGG+TGG | 0.371781 | 5_4:-32319764 | None:intergenic |
| TTCTCTTATGAAGCTGCAAC+AGG | 0.376028 | 5_4:+32320113 | Msa0848030:intron |
| ACGTTTGTTGACCAACCTTT+GGG | 0.400334 | 5_4:+32320165 | Msa0848030:CDS |
| GGAAATCAAAGATGCTAAAA+GGG | 0.453229 | 5_4:+32319777 | Msa0848030:CDS |
| GTTGACCAACCTTTGGGCAT+GGG | 0.454037 | 5_4:+32320171 | Msa0848030:CDS |
| TATGAAGCTGCAACAGGAGG+TGG | 0.455337 | 5_4:+32320119 | Msa0848030:intron |
| ATGAATGTTTGACGTTGAAA+AGG | 0.461949 | 5_4:-32321544 | None:intergenic |
| TTTCCCTTTCTTTGGTGGCA+TGG | 0.469190 | 5_4:-32319759 | None:intergenic |
| CAACCATGCCACCAAAGAAA+GGG | 0.490895 | 5_4:+32319756 | None:intergenic |
| CATTACATGGTTGTTAACTT+GGG | 0.492563 | 5_4:-32319822 | None:intergenic |
| TGTTGACCAACCTTTGGGCA+TGG | 0.505165 | 5_4:+32320170 | Msa0848030:CDS |
| ATGCTAAAAGGGAAGAACTT+AGG | 0.526270 | 5_4:+32319788 | Msa0848030:CDS |
| ACAACCATGCCACCAAAGAA+AGG | 0.529271 | 5_4:+32319755 | None:intergenic |
| AGAGAGAGAATGTTGACAGA+AGG | 0.549188 | 5_4:+32321438 | Msa0848030:CDS |
| TGAATGTTTGACGTTGAAAA+GGG | 0.551975 | 5_4:-32321543 | None:intergenic |
| GGAGTCTCTAGGAGAGTGTG+AGG | 0.574945 | 5_4:+32321630 | Msa0848030:CDS |
| TTCCACCCATGCCCAAAGGT+TGG | 0.575889 | 5_4:-32320176 | None:intergenic |
| GACCAACCTTTGGGCATGGG+TGG | 0.584681 | 5_4:+32320174 | Msa0848030:CDS |
| AGAAGGTGTGGTGATGCAAA+TGG | 0.601023 | 5_4:+32321455 | Msa0848030:CDS |
| AATATGATGAGGGAGTCTCT+AGG | 0.602757 | 5_4:+32321619 | Msa0848030:CDS |
| CCAATTCCACCCATGCCCAA+AGG | 0.613086 | 5_4:-32320180 | None:intergenic |
| TCTTATGAAGCTGCAACAGG+AGG | 0.628351 | 5_4:+32320116 | Msa0848030:intron |
| GTGGAATTACTATTGAAGCT+CGG | 0.640440 | 5_4:+32320138 | Msa0848030:CDS |
| GAGAATGTTGACAGAAGGTG+TGG | 0.641647 | 5_4:+32321443 | Msa0848030:CDS |
| GCTCGTGTTGAATATGATGA+GGG | 0.678381 | 5_4:+32321609 | Msa0848030:CDS |
| TGCTCGTGTTGAATATGATG+AGG | 0.679787 | 5_4:+32321608 | Msa0848030:CDS |
| GAGTCTCTAGGAGAGTGTGA+GGG | 0.719600 | 5_4:+32321631 | Msa0848030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAAAAAAATTAATTT+TGG | - | chr5_4:32320360-32320379 | None:intergenic | 0.0% |
| !!! | ATTTTTTTAAAATTAAATTT+TGG | + | chr5_4:32320366-32320385 | Msa0848030:intron | 0.0% |
| !!! | AATTTTAAAAAAATTAATTT+TGG | - | chr5_4:32320360-32320379 | None:intergenic | 0.0% |
| !!! | ATTTTTTTAAAATTAAATTT+TGG | + | chr5_4:32320366-32320385 | Msa0848030:intron | 0.0% |
| !!! | AGTTTTTTTTTTTTTTTTGT+TGG | + | chr5_4:32320225-32320244 | Msa0848030:intron | 10.0% |
| !! | AAAAATAAAAATTAATGTAG+AGG | - | chr5_4:32320443-32320462 | None:intergenic | 10.0% |
| !! | AATTAATAAGTTACAATTAT+CGG | + | chr5_4:32320597-32320616 | Msa0848030:intron | 10.0% |
| !!! | GTTTTTAATGTTAAATAATA+TGG | - | chr5_4:32321276-32321295 | None:intergenic | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTTGT+TGG | + | chr5_4:32320225-32320244 | Msa0848030:intron | 10.0% |
| !! | AAAAATAAAAATTAATGTAG+AGG | - | chr5_4:32320443-32320462 | None:intergenic | 10.0% |
| !! | AATTAATAAGTTACAATTAT+CGG | + | chr5_4:32320597-32320616 | Msa0848030:intron | 10.0% |
| !!! | GTTTTTAATGTTAAATAATA+TGG | - | chr5_4:32321276-32321295 | None:intergenic | 10.0% |
| !!! | ATAATTTCTAGTTTTCTATA+AGG | - | chr5_4:32319979-32319998 | None:intergenic | 15.0% |
| !!! | AAACATAAGATTACTTTTTT+TGG | - | chr5_4:32320093-32320112 | None:intergenic | 15.0% |
| !!! | AAAAATGATCTAATATTTTG+TGG | - | chr5_4:32320741-32320760 | None:intergenic | 15.0% |
| !! | ATTATAAAGTACGTATTAAA+TGG | - | chr5_4:32320868-32320887 | None:intergenic | 15.0% |
| !!! | TAAAACCATTTTAACTTTAT+GGG | + | chr5_4:32320942-32320961 | Msa0848030:intron | 15.0% |
| !!! | TACATAATTTGTTTTTGTAA+AGG | + | chr5_4:32321221-32321240 | Msa0848030:intron | 15.0% |
| !!! | TACATGATTAGTTTTTTTAA+AGG | + | chr5_4:32321326-32321345 | Msa0848030:intron | 15.0% |
| !!! | ATAATTTCTAGTTTTCTATA+AGG | - | chr5_4:32319979-32319998 | None:intergenic | 15.0% |
| !!! | AAACATAAGATTACTTTTTT+TGG | - | chr5_4:32320093-32320112 | None:intergenic | 15.0% |
| !!! | AAAAATGATCTAATATTTTG+TGG | - | chr5_4:32320741-32320760 | None:intergenic | 15.0% |
| !! | ATTATAAAGTACGTATTAAA+TGG | - | chr5_4:32320868-32320887 | None:intergenic | 15.0% |
| !!! | TAAAACCATTTTAACTTTAT+GGG | + | chr5_4:32320942-32320961 | Msa0848030:intron | 15.0% |
| !!! | TACATAATTTGTTTTTGTAA+AGG | + | chr5_4:32321221-32321240 | Msa0848030:intron | 15.0% |
| !!! | TACATGATTAGTTTTTTTAA+AGG | + | chr5_4:32321326-32321345 | Msa0848030:intron | 15.0% |
| !!! | CTTTTTTTGGTCATTAATAT+TGG | - | chr5_4:32320080-32320099 | None:intergenic | 20.0% |
| !! | TGCATTGTTTGAATTAAAAT+TGG | - | chr5_4:32320269-32320288 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGAAAAGACCT+AGG | + | chr5_4:32320453-32320472 | Msa0848030:intron | 20.0% |
| !! | ATTTACTAAATAAGAACACA+CGG | + | chr5_4:32320570-32320589 | Msa0848030:intron | 20.0% |
| !!! | GTAAAACCATTTTAACTTTA+TGG | + | chr5_4:32320941-32320960 | Msa0848030:intron | 20.0% |
| !!! | CTTTTTTTGGTCATTAATAT+TGG | - | chr5_4:32320080-32320099 | None:intergenic | 20.0% |
| !! | TGCATTGTTTGAATTAAAAT+TGG | - | chr5_4:32320269-32320288 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGAAAAGACCT+AGG | + | chr5_4:32320453-32320472 | Msa0848030:intron | 20.0% |
| !! | ATTTACTAAATAAGAACACA+CGG | + | chr5_4:32320570-32320589 | Msa0848030:intron | 20.0% |
| !!! | GTAAAACCATTTTAACTTTA+TGG | + | chr5_4:32320941-32320960 | Msa0848030:intron | 20.0% |
| !! | TAGTCTTAGAAGTTAAAACA+TGG | - | chr5_4:32319888-32319907 | None:intergenic | 25.0% |
| !!! | CTATGTTATTTCTCTGAATT+TGG | + | chr5_4:32319942-32319961 | Msa0848030:intron | 25.0% |
| !!! | AGTCATTTTTCATTTAGTGA+TGG | + | chr5_4:32320035-32320054 | Msa0848030:intron | 25.0% |
| ! | ATAATGTGAAGTTCTCAAAA+TGG | + | chr5_4:32320514-32320533 | Msa0848030:intron | 25.0% |
| !! | GTGTGTTCTTATTTAGTAAA+TGG | - | chr5_4:32320571-32320590 | None:intergenic | 25.0% |
| ! | TCATTTGTAGGAAATAAAAC+TGG | + | chr5_4:32320620-32320639 | Msa0848030:intron | 25.0% |
| ! | GTTCAATAGAGATTAAAAGT+TGG | - | chr5_4:32321135-32321154 | None:intergenic | 25.0% |
| ! | AATAATATGGGTTTAGTGAT+GGG | - | chr5_4:32321263-32321282 | None:intergenic | 25.0% |
| ! | AAATAATATGGGTTTAGTGA+TGG | - | chr5_4:32321264-32321283 | None:intergenic | 25.0% |
| ! | CACAAAAAATAATTAGTGCA+TGG | - | chr5_4:32321384-32321403 | None:intergenic | 25.0% |
| !!! | CATGCACTAATTATTTTTTG+TGG | + | chr5_4:32321382-32321401 | Msa0848030:intron | 25.0% |
| !! | TAGTCTTAGAAGTTAAAACA+TGG | - | chr5_4:32319888-32319907 | None:intergenic | 25.0% |
| !!! | CTATGTTATTTCTCTGAATT+TGG | + | chr5_4:32319942-32319961 | Msa0848030:intron | 25.0% |
| !!! | AGTCATTTTTCATTTAGTGA+TGG | + | chr5_4:32320035-32320054 | Msa0848030:intron | 25.0% |
| ! | ATAATGTGAAGTTCTCAAAA+TGG | + | chr5_4:32320514-32320533 | Msa0848030:intron | 25.0% |
| !! | GTGTGTTCTTATTTAGTAAA+TGG | - | chr5_4:32320571-32320590 | None:intergenic | 25.0% |
| ! | TCATTTGTAGGAAATAAAAC+TGG | + | chr5_4:32320620-32320639 | Msa0848030:intron | 25.0% |
| ! | GTTCAATAGAGATTAAAAGT+TGG | - | chr5_4:32321135-32321154 | None:intergenic | 25.0% |
| ! | AATAATATGGGTTTAGTGAT+GGG | - | chr5_4:32321263-32321282 | None:intergenic | 25.0% |
| ! | AAATAATATGGGTTTAGTGA+TGG | - | chr5_4:32321264-32321283 | None:intergenic | 25.0% |
| ! | CACAAAAAATAATTAGTGCA+TGG | - | chr5_4:32321384-32321403 | None:intergenic | 25.0% |
| !!! | CATGCACTAATTATTTTTTG+TGG | + | chr5_4:32321382-32321401 | Msa0848030:intron | 25.0% |
| ! | ATCTTTGATTTCCCTTTCTT+TGG | - | chr5_4:32319770-32319789 | None:intergenic | 30.0% |
| GGAAATCAAAGATGCTAAAA+GGG | + | chr5_4:32319777-32319796 | Msa0848030:CDS | 30.0% | |
| CATTACATGGTTGTTAACTT+GGG | - | chr5_4:32319825-32319844 | None:intergenic | 30.0% | |
| ACATTACATGGTTGTTAACT+TGG | - | chr5_4:32319826-32319845 | None:intergenic | 30.0% | |
| GGATCAAAGTTTACATTACA+TGG | - | chr5_4:32319838-32319857 | None:intergenic | 30.0% | |
| !! | ATGGACCATAGAGTTTTAAT+TGG | + | chr5_4:32320054-32320073 | Msa0848030:intron | 30.0% |
| ATTGGCCAATTAAAACTCTA+TGG | - | chr5_4:32320062-32320081 | None:intergenic | 30.0% | |
| AAGAGTCAACATATTGTGTT+TGG | - | chr5_4:32320333-32320352 | None:intergenic | 30.0% | |
| TACATGTCATTGTCAAATGA+GGG | - | chr5_4:32320419-32320438 | None:intergenic | 30.0% | |
| TTACATGTCATTGTCAAATG+AGG | - | chr5_4:32320420-32320439 | None:intergenic | 30.0% | |
| TACAATTATCGGTCATTTGT+AGG | + | chr5_4:32320608-32320627 | Msa0848030:intron | 30.0% | |
| ATCAGCCCATAAAGTTAAAA+TGG | - | chr5_4:32320950-32320969 | None:intergenic | 30.0% | |
| CAATAGAGATTAAAAGTTGG+AGG | - | chr5_4:32321132-32321151 | None:intergenic | 30.0% | |
| !! | TTTTTGTGGTTGATATTTGC+AGG | + | chr5_4:32321396-32321415 | Msa0848030:intron | 30.0% |
| TTCTGTAAAAACGACATCTT+TGG | - | chr5_4:32321501-32321520 | None:intergenic | 30.0% | |
| TGAATGTTTGACGTTGAAAA+GGG | - | chr5_4:32321546-32321565 | None:intergenic | 30.0% | |
| ATGAATGTTTGACGTTGAAA+AGG | - | chr5_4:32321547-32321566 | None:intergenic | 30.0% | |
| ! | ATCTTTGATTTCCCTTTCTT+TGG | - | chr5_4:32319770-32319789 | None:intergenic | 30.0% |
| GGAAATCAAAGATGCTAAAA+GGG | + | chr5_4:32319777-32319796 | Msa0848030:CDS | 30.0% | |
| CATTACATGGTTGTTAACTT+GGG | - | chr5_4:32319825-32319844 | None:intergenic | 30.0% | |
| ACATTACATGGTTGTTAACT+TGG | - | chr5_4:32319826-32319845 | None:intergenic | 30.0% | |
| GGATCAAAGTTTACATTACA+TGG | - | chr5_4:32319838-32319857 | None:intergenic | 30.0% | |
| !! | ATGGACCATAGAGTTTTAAT+TGG | + | chr5_4:32320054-32320073 | Msa0848030:intron | 30.0% |
| ATTGGCCAATTAAAACTCTA+TGG | - | chr5_4:32320062-32320081 | None:intergenic | 30.0% | |
| AAGAGTCAACATATTGTGTT+TGG | - | chr5_4:32320333-32320352 | None:intergenic | 30.0% | |
| TACATGTCATTGTCAAATGA+GGG | - | chr5_4:32320419-32320438 | None:intergenic | 30.0% | |
| TTACATGTCATTGTCAAATG+AGG | - | chr5_4:32320420-32320439 | None:intergenic | 30.0% | |
| TACAATTATCGGTCATTTGT+AGG | + | chr5_4:32320608-32320627 | Msa0848030:intron | 30.0% | |
| ATCAGCCCATAAAGTTAAAA+TGG | - | chr5_4:32320950-32320969 | None:intergenic | 30.0% | |
| CAATAGAGATTAAAAGTTGG+AGG | - | chr5_4:32321132-32321151 | None:intergenic | 30.0% | |
| !! | TTTTTGTGGTTGATATTTGC+AGG | + | chr5_4:32321396-32321415 | Msa0848030:intron | 30.0% |
| TTCTGTAAAAACGACATCTT+TGG | - | chr5_4:32321501-32321520 | None:intergenic | 30.0% | |
| TGAATGTTTGACGTTGAAAA+GGG | - | chr5_4:32321546-32321565 | None:intergenic | 30.0% | |
| ATGAATGTTTGACGTTGAAA+AGG | - | chr5_4:32321547-32321566 | None:intergenic | 30.0% | |
| ! | TTTGATTTCCCTTTCTTTGG+TGG | - | chr5_4:32319767-32319786 | None:intergenic | 35.0% |
| GGGAAATCAAAGATGCTAAA+AGG | + | chr5_4:32319776-32319795 | Msa0848030:CDS | 35.0% | |
| ATGCTAAAAGGGAAGAACTT+AGG | + | chr5_4:32319788-32319807 | Msa0848030:CDS | 35.0% | |
| GTGGAATTACTATTGAAGCT+CGG | + | chr5_4:32320138-32320157 | Msa0848030:CDS | 35.0% | |
| AAAAACTAGAGACGCTAGTA+GGG | - | chr5_4:32320212-32320231 | None:intergenic | 35.0% | |
| AAAAAACTAGAGACGCTAGT+AGG | - | chr5_4:32320213-32320232 | None:intergenic | 35.0% | |
| AAGTAATGTAGTGTACTCCT+AGG | - | chr5_4:32320473-32320492 | None:intergenic | 35.0% | |
| !! | GTTATTCTAGCTTTCTCACT+CGG | - | chr5_4:32320543-32320562 | None:intergenic | 35.0% |
| ! | TTTGATTTCCCTTTCTTTGG+TGG | - | chr5_4:32319767-32319786 | None:intergenic | 35.0% |
| GGGAAATCAAAGATGCTAAA+AGG | + | chr5_4:32319776-32319795 | Msa0848030:CDS | 35.0% | |
| ATGCTAAAAGGGAAGAACTT+AGG | + | chr5_4:32319788-32319807 | Msa0848030:CDS | 35.0% | |
| GTGGAATTACTATTGAAGCT+CGG | + | chr5_4:32320138-32320157 | Msa0848030:CDS | 35.0% | |
| AAAAACTAGAGACGCTAGTA+GGG | - | chr5_4:32320212-32320231 | None:intergenic | 35.0% | |
| AAAAAACTAGAGACGCTAGT+AGG | - | chr5_4:32320213-32320232 | None:intergenic | 35.0% | |
| AAGTAATGTAGTGTACTCCT+AGG | - | chr5_4:32320473-32320492 | None:intergenic | 35.0% | |
| !! | GTTATTCTAGCTTTCTCACT+CGG | - | chr5_4:32320543-32320562 | None:intergenic | 35.0% |
| ! | TTACTGACTAGAAGAGAGAG+TGG | - | chr5_4:32319859-32319878 | None:intergenic | 40.0% |
| TTCTCTTATGAAGCTGCAAC+AGG | + | chr5_4:32320113-32320132 | Msa0848030:intron | 40.0% | |
| ! | ACGTTTGTTGACCAACCTTT+GGG | + | chr5_4:32320165-32320184 | Msa0848030:CDS | 40.0% |
| ! | TTGTCAAATGAGGGTGTACA+TGG | - | chr5_4:32320410-32320429 | None:intergenic | 40.0% |
| CGTCATTAGAGTCACAAGTT+GGG | - | chr5_4:32321007-32321026 | None:intergenic | 40.0% | |
| ACGTCATTAGAGTCACAAGT+TGG | - | chr5_4:32321008-32321027 | None:intergenic | 40.0% | |
| AACTTGTGACTCTAATGACG+TGG | + | chr5_4:32321007-32321026 | Msa0848030:intron | 40.0% | |
| CGTGGCAATTGGATATTCAA+TGG | + | chr5_4:32321025-32321044 | Msa0848030:intron | 40.0% | |
| ! | AATATGGGTTTAGTGATGGG+AGG | - | chr5_4:32321260-32321279 | None:intergenic | 40.0% |
| AGAGAGAGAATGTTGACAGA+AGG | + | chr5_4:32321438-32321457 | Msa0848030:CDS | 40.0% | |
| TGCTCGTGTTGAATATGATG+AGG | + | chr5_4:32321608-32321627 | Msa0848030:CDS | 40.0% | |
| GCTCGTGTTGAATATGATGA+GGG | + | chr5_4:32321609-32321628 | Msa0848030:CDS | 40.0% | |
| AATATGATGAGGGAGTCTCT+AGG | + | chr5_4:32321619-32321638 | Msa0848030:CDS | 40.0% | |
| ! | TTACTGACTAGAAGAGAGAG+TGG | - | chr5_4:32319859-32319878 | None:intergenic | 40.0% |
| TTCTCTTATGAAGCTGCAAC+AGG | + | chr5_4:32320113-32320132 | Msa0848030:intron | 40.0% | |
| ! | ACGTTTGTTGACCAACCTTT+GGG | + | chr5_4:32320165-32320184 | Msa0848030:CDS | 40.0% |
| ! | TTGTCAAATGAGGGTGTACA+TGG | - | chr5_4:32320410-32320429 | None:intergenic | 40.0% |
| CGTCATTAGAGTCACAAGTT+GGG | - | chr5_4:32321007-32321026 | None:intergenic | 40.0% | |
| ACGTCATTAGAGTCACAAGT+TGG | - | chr5_4:32321008-32321027 | None:intergenic | 40.0% | |
| AACTTGTGACTCTAATGACG+TGG | + | chr5_4:32321007-32321026 | Msa0848030:intron | 40.0% | |
| CGTGGCAATTGGATATTCAA+TGG | + | chr5_4:32321025-32321044 | Msa0848030:intron | 40.0% | |
| ! | AATATGGGTTTAGTGATGGG+AGG | - | chr5_4:32321260-32321279 | None:intergenic | 40.0% |
| AGAGAGAGAATGTTGACAGA+AGG | + | chr5_4:32321438-32321457 | Msa0848030:CDS | 40.0% | |
| TGCTCGTGTTGAATATGATG+AGG | + | chr5_4:32321608-32321627 | Msa0848030:CDS | 40.0% | |
| GCTCGTGTTGAATATGATGA+GGG | + | chr5_4:32321609-32321628 | Msa0848030:CDS | 40.0% | |
| AATATGATGAGGGAGTCTCT+AGG | + | chr5_4:32321619-32321638 | Msa0848030:CDS | 40.0% | |
| TCTTATGAAGCTGCAACAGG+AGG | + | chr5_4:32320116-32320135 | Msa0848030:intron | 45.0% | |
| ! | CACGTTTGTTGACCAACCTT+TGG | + | chr5_4:32320164-32320183 | Msa0848030:CDS | 45.0% |
| ! | ATGAGGGTGTACATGGACTT+TGG | - | chr5_4:32320403-32320422 | None:intergenic | 45.0% |
| GACTCTAATGACGTGGCAAT+TGG | + | chr5_4:32321014-32321033 | Msa0848030:intron | 45.0% | |
| GTGCATGGTTCAAAACTGCA+TGG | - | chr5_4:32321369-32321388 | None:intergenic | 45.0% | |
| GAGAATGTTGACAGAAGGTG+TGG | + | chr5_4:32321443-32321462 | Msa0848030:CDS | 45.0% | |
| ! | AGAAGGTGTGGTGATGCAAA+TGG | + | chr5_4:32321455-32321474 | Msa0848030:CDS | 45.0% |
| TCTTATGAAGCTGCAACAGG+AGG | + | chr5_4:32320116-32320135 | Msa0848030:intron | 45.0% | |
| ! | CACGTTTGTTGACCAACCTT+TGG | + | chr5_4:32320164-32320183 | Msa0848030:CDS | 45.0% |
| ! | ATGAGGGTGTACATGGACTT+TGG | - | chr5_4:32320403-32320422 | None:intergenic | 45.0% |
| GACTCTAATGACGTGGCAAT+TGG | + | chr5_4:32321014-32321033 | Msa0848030:intron | 45.0% | |
| GTGCATGGTTCAAAACTGCA+TGG | - | chr5_4:32321369-32321388 | None:intergenic | 45.0% | |
| GAGAATGTTGACAGAAGGTG+TGG | + | chr5_4:32321443-32321462 | Msa0848030:CDS | 45.0% | |
| ! | AGAAGGTGTGGTGATGCAAA+TGG | + | chr5_4:32321455-32321474 | Msa0848030:CDS | 45.0% |
| !!! | TTTTTAATGTTAAATAATAT+GGG | - | chr5_4:32321275-32321294 | None:intergenic | 5.0% |
| !!! | TTTTTAATGTTAAATAATAT+GGG | - | chr5_4:32321275-32321294 | None:intergenic | 5.0% |
| TATGAAGCTGCAACAGGAGG+TGG | + | chr5_4:32320119-32320138 | Msa0848030:intron | 50.0% | |
| TGTTGACCAACCTTTGGGCA+TGG | + | chr5_4:32320170-32320189 | Msa0848030:CDS | 50.0% | |
| GTTGACCAACCTTTGGGCAT+GGG | + | chr5_4:32320171-32320190 | Msa0848030:CDS | 50.0% | |
| TATGAAGCTGCAACAGGAGG+TGG | + | chr5_4:32320119-32320138 | Msa0848030:intron | 50.0% | |
| TGTTGACCAACCTTTGGGCA+TGG | + | chr5_4:32320170-32320189 | Msa0848030:CDS | 50.0% | |
| GTTGACCAACCTTTGGGCAT+GGG | + | chr5_4:32320171-32320190 | Msa0848030:CDS | 50.0% | |
| TTCCACCCATGCCCAAAGGT+TGG | - | chr5_4:32320179-32320198 | None:intergenic | 55.0% | |
| CCAATTCCACCCATGCCCAA+AGG | - | chr5_4:32320183-32320202 | None:intergenic | 55.0% | |
| CCTTTGGGCATGGGTGGAAT+TGG | + | chr5_4:32320180-32320199 | Msa0848030:CDS | 55.0% | |
| TTCCACCCATGCCCAAAGGT+TGG | - | chr5_4:32320179-32320198 | None:intergenic | 55.0% | |
| CCAATTCCACCCATGCCCAA+AGG | - | chr5_4:32320183-32320202 | None:intergenic | 55.0% | |
| CCTTTGGGCATGGGTGGAAT+TGG | + | chr5_4:32320180-32320199 | Msa0848030:CDS | 55.0% | |
| GACCAACCTTTGGGCATGGG+TGG | + | chr5_4:32320174-32320193 | Msa0848030:CDS | 60.0% | |
| GACCAACCTTTGGGCATGGG+TGG | + | chr5_4:32320174-32320193 | Msa0848030:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 32319761 | 32321650 | 32319761 | ID=Msa0848030;Name=Msa0848030 |
| chr5_4 | mRNA | 32319761 | 32321650 | 32319761 | ID=Msa0848030-mRNA-1;Parent=Msa0848030;Name=Msa0848030-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.33|0.5|0.66|3|0|128 |
| chr5_4 | exon | 32319761 | 32319838 | 32319761 | ID=Msa0848030-mRNA-1:exon:11269;Parent=Msa0848030-mRNA-1 |
| chr5_4 | exon | 32320126 | 32320201 | 32320126 | ID=Msa0848030-mRNA-1:exon:11270;Parent=Msa0848030-mRNA-1 |
| chr5_4 | exon | 32321418 | 32321650 | 32321418 | ID=Msa0848030-mRNA-1:exon:11271;Parent=Msa0848030-mRNA-1 |
| chr5_4 | CDS | 32319761 | 32319838 | 32319761 | ID=Msa0848030-mRNA-1:cds;Parent=Msa0848030-mRNA-1 |
| chr5_4 | CDS | 32320126 | 32320201 | 32320126 | ID=Msa0848030-mRNA-1:cds;Parent=Msa0848030-mRNA-1 |
| chr5_4 | CDS | 32321418 | 32321650 | 32321418 | ID=Msa0848030-mRNA-1:cds;Parent=Msa0848030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
