AlfalfaGEDB | Msa0112750

M. sativa cultivar zhongmu-4 / Msa0112750

KEGG: K14852
GO: GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112750	XP_003593202.2	63.415	123	6	2	1	84	209	331	4.03e-33	126

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112750	sp\|Q9SH88\|RRS1_ARATH	56.897	58	21	1	1	54	208	265	9.22e-12	62.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112750	G7INW4	63.415	123	6	2	1	84	209	331	1.93e-33	126

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0112750	-0.826260	2.991311e-54	-8.615850e-47
Msa0001790	Msa0112750	0.821190	4.606363e-53	-8.615850e-47
Msa0003890	Msa0112750	0.805302	1.425709e-49	-8.615850e-47
Msa0004640	Msa0112750	0.800673	1.290505e-48	-8.615850e-47
Msa0004880	Msa0112750	0.865412	6.015698e-65	-8.615850e-47
Msa0004920	Msa0112750	0.802531	5.367371e-49	-8.615850e-47
Msa0006070	Msa0112750	0.811137	8.136628e-51	-8.615850e-47
Msa0006110	Msa0112750	0.812953	3.270725e-51	-8.615850e-47
Msa0007080	Msa0112750	0.814225	1.717155e-51	-8.615850e-47
Msa0011170	Msa0112750	0.817243	3.647754e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112750	MtrunA17_Chr2g0279161	63.415	123	6	2	1	84	209	331	3.71e-37	126

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112750	AT2G37990.1	56.897	58	21	1	1	54	208	265	9.38e-13	62.0

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Find 14 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCAAAATTACTGTGCTTT+TGG	0.169446	1_3:-28264416	None:intergenic
ACATAAAGGAAAGAATCAAA+AGG	0.566037	1_3:+28263935	Msa0112750:CDS
ACCGCTAGCTGTAGCAGTTG+AGG	0.564063	1_3:-28263871	None:intergenic
CAACTGCTACAGCTAGCGGT+GGG	0.666293	1_3:+28263874	Msa0112750:CDS
CACAGTGACCAATGTGAAGA+AGG	0.507110	1_3:+28264295	Msa0112750:CDS
CCGAAGGAATGATAAATCGA+AGG	0.616796	1_3:+28264325	Msa0112750:CDS
CCTTCGATTTATCATTCCTT+CGG	0.409239	1_3:-28264325	None:intergenic
GAAAAGCCTCCAAAACATAA+AGG	0.470960	1_3:+28263921	Msa0112750:CDS
GATGAGTTAGGCAGTGTAGC+AGG	0.486950	1_3:+28263843	Msa0112750:CDS
GCCTCAACTGCTACAGCTAG+CGG	0.592484	1_3:+28263870	Msa0112750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGTATATCATGGTTATTCT+TGG	-	chr1_3:28264155-28264174	None:intergenic	30.0%
TGGGAAGTTTGACAAGAAAT+TGG	+	chr1_3:28263893-28263912	Msa0112750:CDS	35.0%
GAAAAGCCTCCAAAACATAA+AGG	+	chr1_3:28263921-28263940	Msa0112750:CDS	35.0%
ACTAGACGAAGAGATAACAA+AGG	-	chr1_3:28264056-28264075	None:intergenic	35.0%
AATTGTACTCTCTGCATTCT+AGG	+	chr1_3:28264268-28264287	Msa0112750:intron	35.0%
CCTTCGATTTATCATTCCTT+CGG	-	chr1_3:28264328-28264347	None:intergenic	35.0%
TGAAGAAGGAGAAAAACCGA+AGG	+	chr1_3:28264309-28264328	Msa0112750:CDS	40.0%
CCGAAGGAATGATAAATCGA+AGG	+	chr1_3:28264325-28264344	Msa0112750:CDS	40.0%
CACAGTGACCAATGTGAAGA+AGG	+	chr1_3:28264295-28264314	Msa0112750:CDS	45.0%
GATGAGTTAGGCAGTGTAGC+AGG	+	chr1_3:28263843-28263862	Msa0112750:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	28263843	28264430	28263843	ID=Msa0112750;Name=Msa0112750
chr1_3	mRNA	28263843	28264430	28263843	ID=Msa0112750-mRNA-1;Parent=Msa0112750;Name=Msa0112750-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|0\|0\|1\|1\|1\|2\|0\|84
chr1_3	exon	28263843	28263956	28263843	ID=Msa0112750-mRNA-1:exon:9303;Parent=Msa0112750-mRNA-1
chr1_3	exon	28264290	28264430	28264290	ID=Msa0112750-mRNA-1:exon:9304;Parent=Msa0112750-mRNA-1
chr1_3	CDS	28263843	28263956	28263843	ID=Msa0112750-mRNA-1:cds;Parent=Msa0112750-mRNA-1
chr1_3	CDS	28264290	28264430	28264290	ID=Msa0112750-mRNA-1:cds;Parent=Msa0112750-mRNA-1

Gene Sequence	>Msa0112750 GATGAGTTAGGCAGTGTAGCAGGATTTGCCTCAACTGCTACAGCTAGCGGTGGGAAGTTTGACAAGAAATTGGCCTGCGAAAAGCCTCCAAAACATAAAGGAAAGAATCAAAAGGCTGTCACAGTGACCAATGTGAAGAAGGAGAAAAACCGAAGGAATGATAAATCGAAGGCTTCAGCAACTAACAGCAAATTGAAAACTCAGAAGAAGCCTTTTAAAAAGGGTGCCAAGAAAGGCAACCCAAAAGCACAGTAA
Protein sequence	>Msa0112750 DELGSVAGFASTATASGGKFDKKLACEKPPKHKGKNQKAVTVTNVKKEKNRRNDKSKASATNSKLKTQKKPFKKGAKKGNPKAQ*