AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0811770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811770 MtrunA17_Chr5g0428331 88.172 186 15 3 1 185 1 180 3.91e-110 319
Msa0811770 MtrunA17_Chr5g0431811 55.652 115 49 2 166 278 629 743 6.03e-33 130
Msa0811770 MtrunA17_Chr7g0275531 40.299 134 71 2 200 332 111 236 8.04e-24 100
Msa0811770 MtrunA17_Chr3g0126391 52.688 93 42 2 176 266 100 192 2.81e-23 99.0
Msa0811770 MtrunA17_Chr8g0387981 58.108 74 31 0 203 276 128 201 7.40e-23 98.2
Msa0811770 MtrunA17_Chr8g0347251 59.091 66 27 0 207 272 136 201 7.00e-21 92.4
Msa0811770 MtrunA17_Chr7g0244981 41.667 108 57 2 164 266 75 181 8.00e-19 85.5
Msa0811770 MtrunA17_Chr7g0244971 37.963 108 62 1 164 266 75 182 3.31e-18 84.0
Msa0811770 MtrunA17_Chr8g0334541 41.584 101 54 2 202 299 98 196 4.86e-18 83.2
Msa0811770 MtrunA17_Chr3g0128671 36.975 119 60 3 163 273 82 193 1.14e-17 82.8
Msa0811770 MtrunA17_Chr2g0284321 43.373 83 45 1 182 264 10 90 1.84e-17 80.5
Msa0811770 MtrunA17_Chr8g0350621 49.231 65 33 0 202 266 106 170 4.53e-17 80.1
Msa0811770 MtrunA17_Chr5g0418781 42.857 105 53 4 172 275 90 188 7.11e-17 79.7
Msa0811770 MtrunA17_Chr1g0147881 44.318 88 43 3 180 264 233 317 2.23e-16 79.3
Msa0811770 MtrunA17_Chr2g0315361 55.556 63 28 0 207 269 148 210 2.40e-16 79.0
Msa0811770 MtrunA17_Chr7g0224801 56.897 58 22 1 207 264 93 147 3.16e-16 75.9
Msa0811770 MtrunA17_Chr4g0071521 48.235 85 40 3 181 264 219 300 3.66e-16 78.6
Msa0811770 MtrunA17_Chr2g0293481 40.404 99 53 2 170 264 226 322 5.17e-16 79.0
Msa0811770 MtrunA17_Chr3g0079691 53.030 66 25 3 199 264 274 333 5.30e-16 79.3
Msa0811770 MtrunA17_Chr7g0263531 50.725 69 28 3 197 264 179 242 1.39e-15 77.8
Msa0811770 MtrunA17_Chr7g0263531 50.877 57 25 1 208 264 362 415 1.62e-11 65.1
Msa0811770 MtrunA17_Chr2g0315381 45.122 82 44 1 189 270 127 207 3.17e-15 75.5
Msa0811770 MtrunA17_Chr5g0443131 55.738 61 24 1 207 267 157 214 3.65e-15 75.5
Msa0811770 MtrunA17_Chr8g0379461 49.231 65 31 1 200 264 69 131 3.68e-15 74.3
Msa0811770 MtrunA17_Chr7g0218081 50.000 62 27 2 203 264 224 281 4.63e-15 76.3
Msa0811770 MtrunA17_Chr7g0218081 46.552 58 28 1 207 264 410 464 4.69e-11 63.9
Msa0811770 MtrunA17_Chr2g0319961 41.509 106 50 4 176 276 47 145 9.18e-15 73.6
Msa0811770 MtrunA17_Chr8g0383351 50.847 59 26 1 207 265 160 215 9.50e-15 73.2
Msa0811770 MtrunA17_Chr4g0051881 56.897 58 22 1 207 264 178 232 9.51e-15 74.3
Msa0811770 MtrunA17_Chr5g0428351 45.588 68 37 0 208 275 184 251 1.03e-14 73.9
Msa0811770 MtrunA17_Chr8g0386241 50.847 59 26 1 207 265 103 158 1.42e-14 71.2
Msa0811770 MtrunA17_Chr5g0418191 47.059 68 32 2 197 264 141 204 1.53e-14 74.3
Msa0811770 MtrunA17_Chr5g0418191 48.276 58 27 1 207 264 320 374 9.51e-12 65.9
Msa0811770 MtrunA17_Chr4g0053281 44.706 85 43 3 180 264 241 321 2.68e-14 73.2
Msa0811770 MtrunA17_Chr2g0315371 50.794 63 31 0 207 269 141 203 2.82e-14 72.8
Msa0811770 MtrunA17_Chr7g0228941 52.542 59 26 1 206 264 51 107 2.90e-14 68.9
Msa0811770 MtrunA17_Chr7g0248721 54.688 64 23 3 207 268 141 200 4.65e-14 70.9
Msa0811770 MtrunA17_Chr1g0184691 43.902 82 41 3 196 275 281 359 4.92e-14 72.4
Msa0811770 MtrunA17_Chr7g0238921 52.542 59 25 1 207 265 124 179 6.29e-14 72.0
Msa0811770 MtrunA17_Chr3g0139021 52.542 59 26 1 206 264 313 369 7.62e-14 72.4
Msa0811770 MtrunA17_Chr7g0249311 51.724 58 24 2 207 264 179 232 1.11e-13 72.4
Msa0811770 MtrunA17_Chr3g0129361 51.724 58 25 1 207 264 144 198 1.18e-13 69.7
Msa0811770 MtrunA17_Chr7g0270191 40.404 99 49 3 207 298 145 240 2.01e-13 70.1
Msa0811770 MtrunA17_Chr5g0401821 41.176 85 46 3 181 264 173 254 2.81e-13 69.3
Msa0811770 MtrunA17_Chr1g0194481 51.724 58 25 1 207 264 158 212 4.74e-13 69.3
Msa0811770 MtrunA17_Chr8g0335811 51.724 58 25 1 207 264 154 208 5.70e-13 67.8
Msa0811770 MtrunA17_Chr4g0042831 35.106 94 50 2 201 294 139 221 7.73e-13 68.9
Msa0811770 MtrunA17_Chr4g0042831 50.000 58 26 1 207 264 278 332 3.09e-12 67.4
Msa0811770 MtrunA17_Chr5g0445311 48.276 58 27 1 207 264 364 418 1.51e-12 68.6
Msa0811770 MtrunA17_Chr5g0445311 47.368 57 26 2 208 264 201 253 3.80e-11 64.3
Msa0811770 MtrunA17_Chr2g0294231 44.737 76 33 2 207 282 203 269 1.70e-12 68.2
Msa0811770 MtrunA17_Chr3g0101131 48.276 58 27 1 207 264 415 469 1.95e-12 68.6
Msa0811770 MtrunA17_Chr3g0101131 46.552 58 27 2 207 264 243 296 9.37e-11 63.2
Msa0811770 MtrunA17_Chr2g0322391 53.448 58 25 1 208 265 350 405 2.06e-12 68.6
Msa0811770 MtrunA17_Chr8g0387501 54.386 57 24 1 208 264 130 184 2.10e-12 66.6
Msa0811770 MtrunA17_Chr3g0099641 50.877 57 26 1 208 264 252 306 3.64e-12 67.4
Msa0811770 MtrunA17_Chr8g0348311 54.386 57 24 1 208 264 156 210 3.65e-12 66.6
Msa0811770 MtrunA17_Chr4g0075201 46.575 73 27 2 208 280 268 328 3.91e-12 67.4
Msa0811770 MtrunA17_Chr3g0106491 46.377 69 31 3 197 264 188 251 4.04e-12 67.4
Msa0811770 MtrunA17_Chr5g0432161 48.276 58 26 2 207 264 244 297 4.95e-12 67.0
Msa0811770 MtrunA17_Chr5g0432161 48.276 58 27 1 207 264 421 475 1.38e-11 65.9
Msa0811770 MtrunA17_Chr2g0289181 47.458 59 29 1 206 264 13 69 5.10e-12 65.1
Msa0811770 MtrunA17_Chr7g0270831 52.632 57 25 1 208 264 217 271 5.14e-12 66.6
Msa0811770 MtrunA17_Chr2g0288871 52.632 57 25 1 208 264 306 360 5.19e-12 67.0
Msa0811770 MtrunA17_Chr1g0150281 49.123 57 27 1 208 264 141 195 7.73e-12 65.1
Msa0811770 MtrunA17_Chr7g0248691 42.529 87 41 3 178 264 132 209 1.05e-11 65.5
Msa0811770 MtrunA17_Chr1g0202461 50.877 57 26 1 208 264 262 316 1.22e-11 65.5
Msa0811770 MtrunA17_Chr4g0004911 44.828 58 29 1 207 264 184 238 1.38e-11 65.5
Msa0811770 MtrunA17_Chr7g0243891 44.928 69 34 2 196 264 205 269 1.46e-11 65.5
Msa0811770 MtrunA17_Chr6g0485431 51.724 58 24 2 208 264 155 209 1.46e-11 65.1
Msa0811770 MtrunA17_Chr7g0270051 49.153 59 28 1 206 264 52 108 1.48e-11 64.3
Msa0811770 MtrunA17_Chr3g0136961 44.615 65 34 1 200 264 131 193 1.96e-11 64.3
Msa0811770 MtrunA17_Chr4g0068541 45.763 59 29 1 207 265 208 263 2.42e-11 64.7
Msa0811770 MtrunA17_Chr7g0249301 46.552 58 27 2 207 264 62 115 4.96e-11 63.5
Msa0811770 MtrunA17_Chr4g0060271 52.632 57 25 1 208 264 256 310 5.38e-11 63.9
Msa0811770 MtrunA17_Chr5g0447701 47.368 57 27 1 208 264 253 306 8.93e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811770 AT2G40740.1 34.561 353 149 11 1 348 11 286 8.56e-52 174
Msa0811770 AT2G40740.3 34.561 353 149 11 1 348 20 295 1.71e-51 174
Msa0811770 AT4G11070.2 52.174 92 42 2 183 273 85 175 7.97e-23 97.1
Msa0811770 AT4G11070.1 52.174 92 42 2 183 273 117 207 1.21e-22 97.1
Msa0811770 AT4G23810.1 59.420 69 28 0 203 271 154 222 2.07e-22 96.7
Msa0811770 AT5G24110.1 45.918 98 52 1 180 277 87 183 5.75e-22 95.1
Msa0811770 AT2G40740.2 42.188 128 42 5 223 348 145 242 1.09e-20 90.5
Msa0811770 AT3G56400.1 52.174 69 33 0 207 275 120 188 7.81e-20 89.0
Msa0811770 AT2G46400.1 36.429 140 80 4 151 290 56 186 1.84e-19 87.8
Msa0811770 AT1G66560.1 45.055 91 43 1 176 266 79 162 2.05e-18 84.0
Msa0811770 AT1G66550.2 52.381 63 30 0 204 266 100 162 1.98e-17 81.3
Msa0811770 AT1G66550.1 52.381 63 30 0 204 266 105 167 2.44e-17 81.3
Msa0811770 AT5G01900.1 55.932 59 26 0 208 266 111 169 6.10e-17 80.1
Msa0811770 AT2G40750.1 53.333 60 28 0 207 266 152 211 7.41e-17 81.3
Msa0811770 AT2G30590.1 33.333 144 88 5 125 264 229 368 1.55e-16 80.5
Msa0811770 AT1G29280.1 45.161 93 40 4 178 264 42 129 2.09e-16 78.6
Msa0811770 AT2G46130.1 56.897 58 22 1 207 264 30 84 3.25e-16 74.3
Msa0811770 AT1G64000.1 55.172 58 23 1 207 264 114 168 5.21e-16 76.3
Msa0811770 AT1G69310.4 49.254 67 30 2 207 273 147 209 5.39e-16 77.8
Msa0811770 AT1G69310.2 49.254 67 30 2 207 273 147 209 5.39e-16 77.8
Msa0811770 AT1G69310.1 49.254 67 30 2 207 273 147 209 5.39e-16 77.8
Msa0811770 AT4G26440.1 49.351 77 26 3 205 281 176 239 7.39e-16 79.3
Msa0811770 AT4G18170.1 28.302 265 157 9 78 340 59 292 1.26e-15 77.4
Msa0811770 AT4G31550.2 42.857 84 45 2 181 264 220 300 1.98e-15 76.6
Msa0811770 AT5G41570.1 55.172 58 23 1 207 264 98 152 2.15e-15 73.9
Msa0811770 AT5G45260.1 31.343 134 88 1 135 264 1132 1265 2.21e-15 78.2
Msa0811770 AT4G31550.1 47.059 85 41 3 180 264 221 301 2.53e-15 76.6
Msa0811770 AT2G34830.2 44.186 86 42 2 183 264 196 279 3.07e-15 77.0
Msa0811770 AT2G34830.1 44.186 86 42 2 183 264 187 270 3.08e-15 77.0
Msa0811770 AT1G66600.1 36.975 119 54 3 148 266 65 162 4.20e-15 74.7
Msa0811770 AT2G24570.1 45.556 90 45 3 180 269 218 303 5.53e-15 75.5
Msa0811770 AT2G37260.1 44.860 107 52 3 175 281 321 420 7.42e-15 75.9
Msa0811770 AT2G37260.1 54.386 57 22 2 208 264 166 218 1.36e-13 72.0
Msa0811770 AT3G58710.1 44.565 92 42 4 178 264 39 126 8.14e-15 74.3
Msa0811770 AT2G37260.3 45.545 101 48 3 175 275 241 334 8.36e-15 75.1
Msa0811770 AT2G37260.3 54.386 57 22 2 208 264 86 138 1.53e-13 71.2
Msa0811770 AT2G37260.2 45.545 101 48 3 175 275 239 332 8.55e-15 75.1
Msa0811770 AT2G37260.2 54.386 57 22 2 208 264 84 136 1.54e-13 71.2
Msa0811770 AT2G23320.1 40.000 85 47 3 181 264 214 295 9.94e-15 74.7
Msa0811770 AT1G29860.1 56.897 58 22 1 207 264 136 190 1.08e-14 73.9
Msa0811770 AT3G01080.3 50.000 62 27 2 203 264 201 258 1.69e-14 73.9
Msa0811770 AT2G03340.1 48.529 68 29 3 198 264 241 303 1.71e-14 75.1
Msa0811770 AT2G03340.1 42.169 83 45 1 207 289 415 494 5.09e-12 67.4
Msa0811770 AT1G30650.1 43.023 86 43 2 183 264 189 272 1.91e-14 74.7
Msa0811770 AT3G58710.2 41.489 94 47 3 176 264 35 125 2.05e-14 73.2
Msa0811770 AT4G39410.1 41.667 84 39 2 207 283 223 303 4.66e-14 72.4
Msa0811770 AT3G01080.2 50.000 62 27 2 203 264 201 258 5.34e-14 73.6
Msa0811770 AT5G28650.1 44.706 85 43 3 181 264 236 317 5.66e-14 72.4
Msa0811770 AT3G01080.1 50.000 62 27 2 203 264 163 220 7.10e-14 72.8
Msa0811770 AT5G46350.1 53.448 58 24 1 207 264 183 237 8.04e-14 72.0
Msa0811770 AT5G13080.1 53.448 58 24 1 207 264 67 121 1.07e-13 68.2
Msa0811770 AT1G13960.1 45.833 72 33 3 194 264 216 282 1.08e-13 72.4
Msa0811770 AT1G13960.1 48.276 58 27 1 207 264 409 463 1.88e-11 65.9
Msa0811770 AT5G22570.1 47.458 59 31 0 208 266 111 169 1.34e-13 70.9
Msa0811770 AT3G04670.1 40.206 97 54 3 181 276 236 329 1.52e-13 71.2
Msa0811770 AT1G13960.2 45.833 72 33 3 194 264 63 129 1.82e-13 71.2
Msa0811770 AT1G13960.2 48.276 58 27 1 207 264 256 310 4.30e-11 63.9
Msa0811770 AT5G52830.1 50.000 82 33 3 183 264 147 220 2.27e-13 70.9
Msa0811770 AT2G44745.1 51.724 58 25 1 207 264 145 199 2.68e-13 68.9
Msa0811770 AT5G56270.1 46.753 77 28 3 205 281 271 334 3.69e-13 71.2
Msa0811770 AT5G49520.1 51.724 58 25 1 207 264 221 275 4.20e-13 70.5
Msa0811770 AT1G80590.1 49.153 59 30 0 208 266 86 144 5.07e-13 68.6
Msa0811770 AT4G23550.1 54.386 57 24 1 208 264 141 195 5.36e-13 69.3
Msa0811770 AT2G38470.1 43.182 88 40 4 183 264 154 237 1.01e-12 69.7
Msa0811770 AT4G04450.2 42.045 88 38 3 208 295 199 273 1.36e-12 68.9
Msa0811770 AT4G04450.1 42.045 88 38 3 208 295 293 367 1.69e-12 68.9
Msa0811770 AT4G01250.1 39.759 83 43 2 182 264 108 183 2.05e-12 67.4
Msa0811770 AT2G47260.1 37.500 96 53 2 177 272 148 236 2.13e-12 67.8
Msa0811770 AT4G31800.2 43.284 67 36 1 198 264 102 166 2.28e-12 66.6
Msa0811770 AT4G31800.1 43.284 67 36 1 198 264 167 231 3.31e-12 67.0
Msa0811770 AT4G26640.7 48.276 58 27 1 207 264 341 395 3.77e-12 67.8
Msa0811770 AT4G26640.2 48.276 58 27 1 207 264 381 435 3.81e-12 67.8
Msa0811770 AT4G26640.5 48.276 58 27 1 207 264 205 259 4.00e-12 67.4
Msa0811770 AT4G26640.6 48.276 58 27 1 207 264 205 259 4.00e-12 67.4
Msa0811770 AT4G26640.4 48.276 58 27 1 207 264 205 259 4.00e-12 67.4
Msa0811770 AT4G26640.3 48.276 58 27 1 207 264 205 259 4.00e-12 67.4
Msa0811770 AT4G24240.1 40.659 91 50 3 175 264 249 336 4.27e-12 67.0
Msa0811770 AT4G26640.1 48.276 58 27 1 207 264 309 363 4.33e-12 67.8
Msa0811770 AT2G04880.2 49.123 57 26 1 208 264 284 337 7.73e-12 66.6
Msa0811770 AT2G04880.2 51.724 58 24 2 207 264 111 164 1.99e-11 65.5
Msa0811770 AT5G26170.1 44.828 58 29 1 207 264 113 167 8.29e-12 63.5
Msa0811770 AT2G04880.1 49.123 57 26 1 208 264 308 361 8.54e-12 66.6
Msa0811770 AT2G04880.1 51.724 58 24 2 207 264 111 164 1.94e-11 65.5
Msa0811770 AT5G45050.2 43.529 85 41 2 180 264 1130 1207 1.08e-11 67.0
Msa0811770 AT5G45050.1 43.529 85 41 2 180 264 1158 1235 1.10e-11 67.0
Msa0811770 AT5G45050.4 43.529 85 41 2 180 264 1019 1096 1.13e-11 67.0
Msa0811770 AT1G62300.1 52.632 57 25 1 208 264 313 367 1.21e-11 66.2
Msa0811770 AT4G01720.1 52.632 57 25 1 208 264 240 294 1.51e-11 65.9
Msa0811770 AT4G30935.1 41.558 77 41 2 208 284 332 404 1.80e-11 65.5
Msa0811770 AT4G22070.4 52.632 57 25 1 208 264 298 352 3.21e-11 65.1
Msa0811770 AT4G22070.3 52.632 57 25 1 208 264 298 352 3.21e-11 65.1
Msa0811770 AT4G22070.2 52.632 57 25 1 208 264 298 352 3.21e-11 65.1
Msa0811770 AT4G22070.1 52.632 57 25 1 208 264 298 352 3.21e-11 65.1
Msa0811770 AT3G01970.1 48.276 58 27 1 207 264 65 119 3.89e-11 61.2
Msa0811770 AT1G18860.1 52.632 57 25 1 208 264 240 294 6.42e-11 63.9
Msa0811770 AT1G69310.3 43.284 67 30 3 207 273 147 205 7.25e-11 62.8
Msa0811770 AT2G30250.1 52.632 57 24 1 208 264 329 382 8.64e-11 63.2
Msa0811770 AT5G43290.1 49.153 59 27 1 207 265 114 169 8.94e-11 62.4
Msa0811770 AT2G25000.2 37.500 80 48 1 185 264 81 158 9.52e-11 61.6
Msa0811770 AT2G25000.4 37.500 80 48 1 185 264 81 158 9.52e-11 61.6

Find 94 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATGAGAATAGCATTTC+AGG 0.221599 5_3:-41147853 None:intergenic
AAGTCTTTGCACTTGCTTCT+TGG 0.236235 5_3:-41151302 None:intergenic
TATGTTACTTCAACTATGTT+AGG 0.240903 5_3:-41151334 None:intergenic
CATCATCATTACTCTTTCTT+TGG 0.259697 5_3:-41147905 None:intergenic
GATAGATCAAAAGGGTTAGA+AGG 0.266264 5_3:+41148240 Msa0811770:CDS
GGCTTTACTTGGAGAAAATA+TGG 0.298786 5_3:+41150379 Msa0811770:CDS
TGAAATGGGTGGGAGGGATA+TGG 0.320333 5_3:+41148209 Msa0811770:CDS
TGATTATCCGGTGGCCGATA+TGG 0.327197 5_3:+41151543 Msa0811770:CDS
AACTTTGAGGATTGGTGAAA+TGG 0.332908 5_3:+41148194 Msa0811770:CDS
AAAACTCAACATGCTCAAAT+TGG 0.341836 5_3:+41148021 Msa0811770:CDS
CTTTGCACTTGCTTCTTGGC+TGG 0.354716 5_3:-41151298 None:intergenic
TTCAGGGTGGTTGGCCATGT+TGG 0.368022 5_3:-41147836 None:intergenic
TAGTAGCAGTGGCAATAGTA+TGG 0.375087 5_3:+41151588 Msa0811770:CDS
CTCCAAGTAAAGCCATCTTC+TGG 0.382520 5_3:-41150370 None:intergenic
ATTAGAACACTCACATCAAA+AGG 0.383819 5_3:-41148108 None:intergenic
CATTTATCAGAAGTTACTAT+AGG 0.384161 5_3:+41151248 Msa0811770:intron
ACGTTCAGTTGTTAAGGTCT+AGG 0.384626 5_3:+41148169 Msa0811770:CDS
ATTTGAGCAAAGGAATTAGA+AGG 0.385061 5_3:-41147973 None:intergenic
GAAGGTTTAGATAGATCAAA+AGG 0.386309 5_3:+41148231 Msa0811770:CDS
TTCAATGCATGCACATTCAA+TGG 0.387023 5_3:+41148062 Msa0811770:CDS
TAGCAGCAGGAAGAATGATT+TGG 0.389860 5_3:+41150294 Msa0811770:intron
CACCAGAAGATGGCTTTACT+TGG 0.405190 5_3:+41150368 Msa0811770:CDS
TCAGGGTGGTTGGCCATGTT+GGG 0.411278 5_3:-41147835 None:intergenic
AAGATTCGGCATTGATTATC+CGG 0.412157 5_3:+41151531 Msa0811770:CDS
CTGCGGTGAACCACGACCTC+AGG 0.426028 5_3:+41151476 Msa0811770:CDS
GTGTTTCCAATCTGAGGTGC+TGG 0.434455 5_3:-41150337 None:intergenic
GGAAGAAATGGCAGTTTCAA+TGG 0.437250 5_3:-41151440 None:intergenic
ATGTTACTTCAACTATGTTA+GGG 0.440557 5_3:-41151333 None:intergenic
CATGCTCAAATTGGTGGAAG+TGG 0.441412 5_3:+41148030 Msa0811770:CDS
TGGCCACCCTTGGGAAGAAA+TGG 0.446834 5_3:-41151452 None:intergenic
CTAATGTTCACAAGTAGGTT+TGG 0.447789 5_3:-41151415 None:intergenic
GAACATTACATCGGCCATAT+CGG 0.452060 5_3:-41151557 None:intergenic
ACAAGTAGGTTTGGTGGTGG+TGG 0.452659 5_3:-41151406 None:intergenic
ACTTTGAGGATTGGTGAAAT+GGG 0.454574 5_3:+41148195 Msa0811770:CDS
ATATGATGATGGTGCTGTTA+AGG 0.457432 5_3:-41151383 None:intergenic
TCACCGCAGATGGCCACCCT+TGG 0.458735 5_3:-41151462 None:intergenic
GAAATTCATGACTTCTTCCA+TGG 0.461625 5_3:-41147767 None:intergenic
CACCGCAGATGGCCACCCTT+GGG 0.480588 5_3:-41151461 None:intergenic
GGTGGTGGTGGATATGATGA+TGG 0.483740 5_3:-41151394 None:intergenic
TAAGGTCTAGGGAAACTTTG+AGG 0.489231 5_3:+41148181 Msa0811770:CDS
CGTTCAGTTGTTAAGGTCTA+GGG 0.489911 5_3:+41148170 Msa0811770:CDS
GGACCCTCTACTTCAAGATT+CGG 0.492644 5_3:+41151517 Msa0811770:CDS
CGTCTCCGCCCCTGAGGTCG+TGG 0.495381 5_3:-41151486 None:intergenic
CTCAGGGGCGGAGACGGTAC+TGG 0.503754 5_3:+41151493 Msa0811770:CDS
TCTAGGGAAACTTTGAGGAT+TGG 0.504126 5_3:+41148186 Msa0811770:CDS
AGGTCGTGGTTCACCGCAGA+TGG 0.504613 5_3:-41151472 None:intergenic
ATGCATCCAGCACCTCAGAT+TGG 0.509798 5_3:+41150331 Msa0811770:CDS
GCGGTGACGTTCAGTTGTTA+AGG 0.512945 5_3:+41148163 Msa0811770:CDS
CACGACCTCAGGGGCGGAGA+CGG 0.513045 5_3:+41151487 Msa0811770:CDS
TGGATGAGAATAGCATTTCA+GGG 0.524108 5_3:-41147852 None:intergenic
ATAGTTGAAGTAACATATAG+AGG 0.529154 5_3:+41151340 Msa0811770:CDS
ATCTCAGTGTTTCCAATCTG+AGG 0.531039 5_3:-41150343 None:intergenic
ACTCAACATGCTCAAATTGG+TGG 0.531204 5_3:+41148024 Msa0811770:CDS
ACTGAGATGCCACCAGAAGA+TGG 0.534882 5_3:+41150358 Msa0811770:CDS
GAATAGCATTTCAGGGTGGT+TGG 0.535922 5_3:-41147845 None:intergenic
ATGATAAGTGGCGGTGGTGA+TGG 0.538282 5_3:+41148141 Msa0811770:CDS
TTCCCAAGGGTGGCCATCTG+CGG 0.540270 5_3:+41151459 Msa0811770:CDS
AAGGTTTAGATAGATCAAAA+GGG 0.540645 5_3:+41148232 Msa0811770:CDS
ATTGAGAATAAGATGATAAG+TGG 0.540967 5_3:+41148129 Msa0811770:CDS
GAAACTGCCATTTCTTCCCA+AGG 0.545394 5_3:+41151445 Msa0811770:CDS
TGGTACTAATGTTCACAAGT+AGG 0.547624 5_3:-41151420 None:intergenic
TGCGGTGAACCACGACCTCA+GGG 0.552440 5_3:+41151477 Msa0811770:CDS
ATGTTCACAAGTAGGTTTGG+TGG 0.557977 5_3:-41151412 None:intergenic
TTGAGGATTGGTGAAATGGG+TGG 0.562645 5_3:+41148198 Msa0811770:CDS
AGGGGCGGAGACGGTACTGG+TGG 0.562847 5_3:+41151496 Msa0811770:CDS
TGAGGATTGGTGAAATGGGT+GGG 0.564470 5_3:+41148199 Msa0811770:CDS
TAATTTACCTTGGGTACTTG+CGG 0.567600 5_3:-41150420 None:intergenic
GGCCGATGTAATGTTCAACT+CGG 0.582893 5_3:+41151564 Msa0811770:CDS
AAACTGCCATTTCTTCCCAA+GGG 0.586934 5_3:+41151446 Msa0811770:CDS
GGATTGGTGAAATGGGTGGG+AGG 0.593788 5_3:+41148202 Msa0811770:CDS
ATGCCGAATCTTGAAGTAGA+GGG 0.595101 5_3:-41151520 None:intergenic
TTAGAACACTCACATCAAAA+GGG 0.595617 5_3:-41148107 None:intergenic
TACTTGGCCGCAAGTACCCA+AGG 0.596156 5_3:+41150413 Msa0811770:CDS
CTGCCATTTCTTCCCAAGGG+TGG 0.604947 5_3:+41151449 Msa0811770:CDS
TTCAACTCGGGTAGTAGCAG+TGG 0.607187 5_3:+41151577 Msa0811770:CDS
GATTGGTGAAATGGGTGGGA+GGG 0.607995 5_3:+41148203 Msa0811770:CDS
ATGAGACAGAATTTGAGCAA+AGG 0.616039 5_3:-41147983 None:intergenic
AGATAAAGGTGAACCTGATG+AGG 0.619424 5_3:+41151633 Msa0811770:CDS
TTCACAAGTAGGTTTGGTGG+TGG 0.620288 5_3:-41151409 None:intergenic
GCCGATGTAATGTTCAACTC+GGG 0.623899 5_3:+41151565 Msa0811770:CDS
AATGCCGAATCTTGAAGTAG+AGG 0.627530 5_3:-41151521 None:intergenic
CAAGTAAAGCCATCTTCTGG+TGG 0.629125 5_3:-41150367 None:intergenic
GAGAATAAGATGATAAGTGG+CGG 0.650628 5_3:+41148132 Msa0811770:CDS
AATAAGATGATAAGTGGCGG+TGG 0.651861 5_3:+41148135 Msa0811770:CDS
ACATCGGCCATATCGGCCAC+CGG 0.656162 5_3:-41151550 None:intergenic
GTGAACCACGACCTCAGGGG+CGG 0.657610 5_3:+41151481 Msa0811770:CDS
ATAAGTGGCGGTGGTGATGG+CGG 0.661391 5_3:+41148144 Msa0811770:CDS
TGAACTAGAACTACCCAACA+TGG 0.663075 5_3:+41147822 Msa0811770:CDS
ATTCGGCATTGATTATCCGG+TGG 0.666772 5_3:+41151534 Msa0811770:CDS
ATGGGTGGGAGGGATATGGA+AGG 0.678067 5_3:+41148213 Msa0811770:CDS
CAGTACCGTCTCCGCCCCTG+AGG 0.681574 5_3:-41151492 None:intergenic
ACCCGAGTTGAACATTACAT+CGG 0.690614 5_3:-41151566 None:intergenic
GCGGTGAACCACGACCTCAG+GGG 0.741552 5_3:+41151478 Msa0811770:CDS
ATGAGAATAGCATTTCAGGG+TGG 0.763743 5_3:-41147849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAGTTTTTTTTTTTTTTA+TGG - chr5_3:41149826-41149845 None:intergenic 10.0%
!!! TAAAGTGAATTTTTTTTTTA+TGG - chr5_3:41150106-41150125 None:intergenic 10.0%
!!! TTTTACATAAAATTATAAGT+AGG + chr5_3:41150195-41150214 Msa0811770:intron 10.0%
!! TAATTGTACTTTATAAATAT+AGG + chr5_3:41150455-41150474 Msa0811770:intron 10.0%
!! AATTGTACTTTATAAATATA+GGG + chr5_3:41150456-41150475 Msa0811770:intron 10.0%
!!! TTTCAATAATTTTTTTTTGA+AGG + chr5_3:41150884-41150903 Msa0811770:intron 10.0%
!!! TTTCTAAATCATTTTTTTTA+AGG + chr5_3:41151011-41151030 Msa0811770:intron 10.0%
!!! TTATATACATACCATTTTTT+TGG - chr5_3:41148303-41148322 None:intergenic 15.0%
!! TCAAAGTTTCATATATTAAA+TGG + chr5_3:41148385-41148404 Msa0811770:intron 15.0%
!! AAGTTATTAACATTACAATT+GGG - chr5_3:41149539-41149558 None:intergenic 15.0%
!! TAAGTTATTAACATTACAAT+TGG - chr5_3:41149540-41149559 None:intergenic 15.0%
!! ATTGTAATGTTAATAACTTA+TGG + chr5_3:41149540-41149559 Msa0811770:intron 15.0%
!! TTGTAATGTTAATAACTTAT+GGG + chr5_3:41149541-41149560 Msa0811770:intron 15.0%
!!! TCACTAGTTAATTATTTTAA+TGG + chr5_3:41150005-41150024 Msa0811770:intron 15.0%
!!! CGCTTTATTATATAATAATT+TGG + chr5_3:41151062-41151081 Msa0811770:intron 15.0%
!!! ATTTCTAAGGTATTGAATTT+AGG + chr5_3:41148494-41148513 Msa0811770:intron 20.0%
!! TTCCAACAAATTTACATATT+TGG + chr5_3:41148554-41148573 Msa0811770:intron 20.0%
!! TCCAACAAATTTACATATTT+GGG + chr5_3:41148555-41148574 Msa0811770:intron 20.0%
!! AAAAATCTTATGGAAATGAT+TGG - chr5_3:41148889-41148908 None:intergenic 20.0%
!! TTTCTTTCAATTATTGTTGT+TGG - chr5_3:41149109-41149128 None:intergenic 20.0%
!!! CAAAATGTAAGATAGAATTT+TGG + chr5_3:41149225-41149244 Msa0811770:intron 20.0%
!!! TTTTGGCTTAATTAATGATT+TGG + chr5_3:41149242-41149261 Msa0811770:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr5_3:41149601-41149620 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr5_3:41149600-41149619 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr5_3:41149302-41149321 Msa0811770:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr5_3:41149601-41149620 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr5_3:41149600-41149619 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr5_3:41149302-41149321 Msa0811770:intron 20.0%
!! CTTTATGTTATTAGAGTTAA+GGG - chr5_3:41149451-41149470 None:intergenic 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG + chr5_3:41149512-41149531 Msa0811770:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr5_3:41149302-41149321 None:intergenic 20.0%
!! TTGTAACGTTAATAACTTAT+AGG + chr5_3:41149601-41149620 Msa0811770:intron 20.0%
!!! AAACTGATTCGATTTTTTTT+TGG + chr5_3:41149838-41149857 Msa0811770:intron 20.0%
!!! AGTGAATTTTTTTTTTATGG+TGG - chr5_3:41150103-41150122 None:intergenic 20.0%
!! AATAGTTTGACACAATTATT+AGG + chr5_3:41150132-41150151 Msa0811770:intron 20.0%
!! CAATTATTAGGAAGTTAATA+TGG + chr5_3:41150144-41150163 Msa0811770:intron 20.0%
!! AATTAGTGTTAATTTACCTT+GGG - chr5_3:41150432-41150451 None:intergenic 20.0%
!! TAATTAGTGTTAATTTACCT+TGG - chr5_3:41150433-41150452 None:intergenic 20.0%
!! AAGAAATATTCTTAGAAGAA+AGG - chr5_3:41150563-41150582 None:intergenic 20.0%
!!! TTTCTTCTAAGAATATTTCT+TGG + chr5_3:41150562-41150581 Msa0811770:intron 20.0%
!! AAGTATTTAACAAGTAATCA+AGG - chr5_3:41150767-41150786 None:intergenic 20.0%
!! AAGAAAAAAAAAATTGTTGG+TGG - chr5_3:41151170-41151189 None:intergenic 20.0%
!!! ACCAACAATTTTTTTTTTCT+TGG + chr5_3:41151169-41151188 Msa0811770:intron 20.0%
!! ACCAAGAAAAAAAAAATTGT+TGG - chr5_3:41151173-41151192 None:intergenic 20.0%
!!! TTTTATCTAACTGAAGATAA+AGG + chr5_3:41151619-41151638 Msa0811770:CDS 20.0%
! ATTGAGAATAAGATGATAAG+TGG + chr5_3:41148129-41148148 Msa0811770:CDS 25.0%
! AAGGTTTAGATAGATCAAAA+GGG + chr5_3:41148232-41148251 Msa0811770:CDS 25.0%
! ATTCAATAACATAGATTGTG+AGG - chr5_3:41148423-41148442 None:intergenic 25.0%
! ATGTTATTGAATCAAAGTCT+TGG + chr5_3:41148431-41148450 Msa0811770:intron 25.0%
!!! CAACACAAAGATTATTTCTA+AGG + chr5_3:41148481-41148500 Msa0811770:intron 25.0%
! ACCCAAATATGTAAATTTGT+TGG - chr5_3:41148559-41148578 None:intergenic 25.0%
!!! CATATTTGGGTTTTAGTTTA+TGG + chr5_3:41148568-41148587 Msa0811770:intron 25.0%
! TTGCAATTCAACTGAAATTA+AGG - chr5_3:41148658-41148677 None:intergenic 25.0%
! ATACATCAAAGTTGAAAGTT+AGG - chr5_3:41148730-41148749 None:intergenic 25.0%
!! TAGGGTGAAAATTTTCATTA+TGG - chr5_3:41148826-41148845 None:intergenic 25.0%
! TAATGTGAAAATCCTAAGTA+GGG - chr5_3:41148844-41148863 None:intergenic 25.0%
! ATAATGTGAAAATCCTAAGT+AGG - chr5_3:41148845-41148864 None:intergenic 25.0%
!! TTCCATAAGATTTTTACTAG+AGG + chr5_3:41148894-41148913 Msa0811770:intron 25.0%
!! TCCATAAGATTTTTACTAGA+GGG + chr5_3:41148895-41148914 Msa0811770:intron 25.0%
! TAAAAGTAGAGATTGAAATG+AGG + chr5_3:41148951-41148970 Msa0811770:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr5_3:41149572-41149591 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr5_3:41149571-41149590 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG + chr5_3:41149273-41149292 Msa0811770:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr5_3:41149572-41149591 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr5_3:41149571-41149590 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG + chr5_3:41149273-41149292 Msa0811770:intron 25.0%
! GAAACCAAAAAGTAAGTTAA+TGG - chr5_3:41149389-41149408 None:intergenic 25.0%
! CCTTTATGTTATTAGAGTTA+AGG - chr5_3:41149452-41149471 None:intergenic 25.0%
! CCTTAACTCTAATAACATAA+AGG + chr5_3:41149449-41149468 Msa0811770:intron 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG - chr5_3:41149508-41149527 None:intergenic 25.0%
! CGAAACCAAAAAATAAGTTA+AGG + chr5_3:41149511-41149530 Msa0811770:intron 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr5_3:41149273-41149292 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr5_3:41149571-41149590 Msa0811770:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr5_3:41149572-41149591 Msa0811770:intron 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr5_3:41149273-41149292 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr5_3:41149571-41149590 Msa0811770:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr5_3:41149572-41149591 Msa0811770:intron 25.0%
! TCTAGGCTTAATTAATGATT+TGG - chr5_3:41149659-41149678 None:intergenic 25.0%
!!! TTTTTTGGTGTTTGCTATTT+TGG + chr5_3:41149853-41149872 Msa0811770:intron 25.0%
! AAATTTACAAATGCAAGATC+CGG + chr5_3:41150056-41150075 Msa0811770:intron 25.0%
!!! AATTTTTTTTTTATGGTGGC+CGG - chr5_3:41150099-41150118 None:intergenic 25.0%
! GTATAATTCAGTTGTTAGAT+TGG + chr5_3:41150166-41150185 Msa0811770:intron 25.0%
!! ATTCTTAGAAGAAAGGTATA+AGG - chr5_3:41150556-41150575 None:intergenic 25.0%
! ATTCATATTATCTCCTTTGT+TGG + chr5_3:41151205-41151224 Msa0811770:intron 25.0%
! TATTTCAAATTAGCCAACAA+AGG - chr5_3:41151221-41151240 None:intergenic 25.0%
! CATTTATCAGAAGTTACTAT+AGG + chr5_3:41151248-41151267 Msa0811770:intron 25.0%
!! CTGGACACAAATATAATTTT+TGG - chr5_3:41151282-41151301 None:intergenic 25.0%
!! ATGTTACTTCAACTATGTTA+GGG - chr5_3:41151336-41151355 None:intergenic 25.0%
!! TATGTTACTTCAACTATGTT+AGG - chr5_3:41151337-41151356 None:intergenic 25.0%
! ATAGTTGAAGTAACATATAG+AGG + chr5_3:41151340-41151359 Msa0811770:CDS 25.0%
!!! TGCTTTTTCTACATCATCAA+TGG - chr5_3:41147875-41147894 None:intergenic 30.0%
CATCATCATTACTCTTTCTT+TGG - chr5_3:41147908-41147927 None:intergenic 30.0%
ATTTGAGCAAAGGAATTAGA+AGG - chr5_3:41147976-41147995 None:intergenic 30.0%
AAAACTCAACATGCTCAAAT+TGG + chr5_3:41148021-41148040 Msa0811770:CDS 30.0%
TTAGAACACTCACATCAAAA+GGG - chr5_3:41148110-41148129 None:intergenic 30.0%
ATTAGAACACTCACATCAAA+AGG - chr5_3:41148111-41148130 None:intergenic 30.0%
GAAGGTTTAGATAGATCAAA+AGG + chr5_3:41148231-41148250 Msa0811770:CDS 30.0%
!!! TACCATTTTTTTGGTCTTGA+AGG - chr5_3:41148294-41148313 None:intergenic 30.0%
!!! GGGTTTTAGTTTATGGTTAT+AGG + chr5_3:41148575-41148594 Msa0811770:intron 30.0%
! TTCTGTAAGATTTTCACTAG+AGG + chr5_3:41148796-41148815 Msa0811770:intron 30.0%
! TCTGTAAGATTTTCACTAGA+GGG + chr5_3:41148797-41148816 Msa0811770:intron 30.0%
! TGAAAATTTTCACCCTACTT+AGG + chr5_3:41148829-41148848 Msa0811770:intron 30.0%
TCCCTCTAGTAAAAATCTTA+TGG - chr5_3:41148899-41148918 None:intergenic 30.0%
GATTACTCAATGTTTGTACT+AGG - chr5_3:41148931-41148950 None:intergenic 30.0%
AGATTGAAATGAGGTTAACT+TGG + chr5_3:41148960-41148979 Msa0811770:intron 30.0%
TCTACAATTGTGACAAAAAC+AGG - chr5_3:41149068-41149087 None:intergenic 30.0%
! CTTTCAATTATTGTTGTTGG+CGG - chr5_3:41149106-41149125 None:intergenic 30.0%
! ACAAAAGTGAAATGCTTTTG+AGG + chr5_3:41149133-41149152 Msa0811770:intron 30.0%
! GGTATTGAAAGCTTTAGTTT+AGG + chr5_3:41149154-41149173 Msa0811770:intron 30.0%
AACACACCAATAATAACCTA+CGG - chr5_3:41149182-41149201 None:intergenic 30.0%
!! TGGTCCATTAACTTACTTTT+TGG + chr5_3:41149382-41149401 Msa0811770:intron 30.0%
!!! CTTACTTTTTGGTTTCGTTT+TGG + chr5_3:41149393-41149412 Msa0811770:intron 30.0%
! TGGTCTCTTAACTTATTTCT+TGG + chr5_3:41149413-41149432 Msa0811770:intron 30.0%
AATAACATAAAGGACCAAAG+TGG + chr5_3:41149459-41149478 Msa0811770:intron 30.0%
! ATTAAGCCTAGAATTTTCCA+TGG + chr5_3:41149667-41149686 Msa0811770:intron 30.0%
CTAATTACTAAGAAAGACCA+TGG - chr5_3:41149687-41149706 None:intergenic 30.0%
CATGGTCTTTCTTAGTAATT+AGG + chr5_3:41149685-41149704 Msa0811770:intron 30.0%
TAGTTTACATGACCAAAACA+AGG + chr5_3:41149758-41149777 Msa0811770:intron 30.0%
!!! TATTTTGGTGCGTATGTATT+TGG + chr5_3:41149868-41149887 Msa0811770:intron 30.0%
AATTTACAAATGCAAGATCC+GGG + chr5_3:41150057-41150076 Msa0811770:intron 30.0%
!!! ATTTTTTTTTTATGGTGGCC+GGG - chr5_3:41150098-41150117 None:intergenic 30.0%
TATGGCCAAAAAGAAATACT+TGG + chr5_3:41150397-41150416 Msa0811770:CDS 30.0%
!! AAGAAAGGTATAAGGTTTTC+TGG - chr5_3:41150548-41150567 None:intergenic 30.0%
TGTGAATGAGTCAATTCATA+GGG - chr5_3:41150621-41150640 None:intergenic 30.0%
GTACTAGTTGTGATGAAAAA+GGG - chr5_3:41150697-41150716 None:intergenic 30.0%
AGTACTAGTTGTGATGAAAA+AGG - chr5_3:41150698-41150717 None:intergenic 30.0%
AACAATGCATAATATACGCA+AGG + chr5_3:41151125-41151144 Msa0811770:intron 30.0%
!! AAAAAAAATTGTTGGTGGCT+GGG - chr5_3:41151165-41151184 None:intergenic 30.0%
!! AAAAAAAAATTGTTGGTGGC+TGG - chr5_3:41151166-41151185 None:intergenic 30.0%
TGGATGAGAATAGCATTTCA+GGG - chr5_3:41147855-41147874 None:intergenic 35.0%
ATGGATGAGAATAGCATTTC+AGG - chr5_3:41147856-41147875 None:intergenic 35.0%
ATGAGACAGAATTTGAGCAA+AGG - chr5_3:41147986-41148005 None:intergenic 35.0%
TTCAATGCATGCACATTCAA+TGG + chr5_3:41148062-41148081 Msa0811770:CDS 35.0%
GAGAATAAGATGATAAGTGG+CGG + chr5_3:41148132-41148151 Msa0811770:CDS 35.0%
! AACTTTGAGGATTGGTGAAA+TGG + chr5_3:41148194-41148213 Msa0811770:CDS 35.0%
! ACTTTGAGGATTGGTGAAAT+GGG + chr5_3:41148195-41148214 Msa0811770:CDS 35.0%
GATAGATCAAAAGGGTTAGA+AGG + chr5_3:41148240-41148259 Msa0811770:CDS 35.0%
!!! CATTTTTTTGGTCTTGAAGG+TGG - chr5_3:41148291-41148310 None:intergenic 35.0%
CACCTTCAAGACCAAAAAAA+TGG + chr5_3:41148289-41148308 Msa0811770:CDS 35.0%
! GGTATTGAATTTAGGTGTTG+AGG + chr5_3:41148502-41148521 Msa0811770:intron 35.0%
TTATAGGTGCCTTGCTAATT+GGG + chr5_3:41148591-41148610 Msa0811770:intron 35.0%
TTGCGTTAAGATGTGACATA+TGG + chr5_3:41148630-41148649 Msa0811770:intron 35.0%
TGCGTTAAGATGTGACATAT+GGG + chr5_3:41148631-41148650 Msa0811770:intron 35.0%
ATGTGTGTGTGATTGAATCT+AGG + chr5_3:41148990-41149009 Msa0811770:intron 35.0%
! GGGTCACTAGTTTATGAAAA+TGG + chr5_3:41149026-41149045 Msa0811770:intron 35.0%
TAGGATCCGTAGGTTATTAT+TGG + chr5_3:41149173-41149192 Msa0811770:intron 35.0%
TGGTGTGTTTGTAAACAGAA+AGG + chr5_3:41149193-41149212 Msa0811770:intron 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr5_3:41149262-41149281 Msa0811770:intron 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr5_3:41149262-41149281 Msa0811770:intron 35.0%
!!! GGGTCCCTTAACTTATTTTT+TGG - chr5_3:41149519-41149538 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr5_3:41149262-41149281 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr5_3:41149262-41149281 None:intergenic 35.0%
GAAAGACCATGGAAAATTCT+AGG - chr5_3:41149676-41149695 None:intergenic 35.0%
AATTAGGCAACAAGTCATCA+TGG + chr5_3:41149701-41149720 Msa0811770:intron 35.0%
!! CTATAGCAAAGACCTTGTTT+TGG - chr5_3:41149773-41149792 None:intergenic 35.0%
ATTTACAAATGCAAGATCCG+GGG + chr5_3:41150058-41150077 Msa0811770:intron 35.0%
!!! TTTTTTTTTTATGGTGGCCG+GGG - chr5_3:41150097-41150116 None:intergenic 35.0%
TCACACACAAACACACATAT+AGG - chr5_3:41150236-41150255 None:intergenic 35.0%
! ATGTGAAGGCACAACAAATT+AGG - chr5_3:41150267-41150286 None:intergenic 35.0%
GGCTTTACTTGGAGAAAATA+TGG + chr5_3:41150379-41150398 Msa0811770:CDS 35.0%
TAATTTACCTTGGGTACTTG+CGG - chr5_3:41150423-41150442 None:intergenic 35.0%
! AAGGTATAAGGTTTTCTGGA+TGG - chr5_3:41150544-41150563 None:intergenic 35.0%
GTGTGAATGAGTCAATTCAT+AGG - chr5_3:41150622-41150641 None:intergenic 35.0%
CATAATATACGCAAGGTTTG+AGG + chr5_3:41151132-41151151 Msa0811770:intron 35.0%
!! AAAAAAATTGTTGGTGGCTG+GGG - chr5_3:41151164-41151183 None:intergenic 35.0%
!! ATATGATGATGGTGCTGTTA+AGG - chr5_3:41151386-41151405 None:intergenic 35.0%
CTAATGTTCACAAGTAGGTT+TGG - chr5_3:41151418-41151437 None:intergenic 35.0%
TGGTACTAATGTTCACAAGT+AGG - chr5_3:41151423-41151442 None:intergenic 35.0%
!! AAGATTCGGCATTGATTATC+CGG + chr5_3:41151531-41151550 Msa0811770:CDS 35.0%
TGAACTAGAACTACCCAACA+TGG + chr5_3:41147822-41147841 Msa0811770:CDS 40.0%
ATGAGAATAGCATTTCAGGG+TGG - chr5_3:41147852-41147871 None:intergenic 40.0%
ACTCAACATGCTCAAATTGG+TGG + chr5_3:41148024-41148043 Msa0811770:CDS 40.0%
AATAAGATGATAAGTGGCGG+TGG + chr5_3:41148135-41148154 Msa0811770:CDS 40.0%
ACGTTCAGTTGTTAAGGTCT+AGG + chr5_3:41148169-41148188 Msa0811770:CDS 40.0%
CGTTCAGTTGTTAAGGTCTA+GGG + chr5_3:41148170-41148189 Msa0811770:CDS 40.0%
TAAGGTCTAGGGAAACTTTG+AGG + chr5_3:41148181-41148200 Msa0811770:CDS 40.0%
! TCTAGGGAAACTTTGAGGAT+TGG + chr5_3:41148186-41148205 Msa0811770:CDS 40.0%
GTTATAGGTGCCTTGCTAAT+TGG + chr5_3:41148590-41148609 Msa0811770:intron 40.0%
ATCTAGTTGCCCAATTAGCA+AGG - chr5_3:41148603-41148622 None:intergenic 40.0%
CAAAGTTGAAAGTTAGGTCG+TGG - chr5_3:41148724-41148743 None:intergenic 40.0%
TCAATCACACACACATTGTG+AGG - chr5_3:41148986-41149005 None:intergenic 40.0%
AATCTAGGTGCCTTGCTAAT+TGG + chr5_3:41149005-41149024 Msa0811770:intron 40.0%
ATCTAGGTGCCTTGCTAATT+GGG + chr5_3:41149006-41149025 Msa0811770:intron 40.0%
AACTAGTGACCCAATTAGCA+AGG - chr5_3:41149018-41149037 None:intergenic 40.0%
! AGCTTTAGTTTAGGATCCGT+AGG + chr5_3:41149163-41149182 Msa0811770:intron 40.0%
TAAAGGACCAAAGTGGTTGA+CGG + chr5_3:41149466-41149485 Msa0811770:intron 40.0%
TAGCAGCAGGAAGAATGATT+TGG + chr5_3:41150294-41150313 Msa0811770:intron 40.0%
ATCTCAGTGTTTCCAATCTG+AGG - chr5_3:41150346-41150365 None:intergenic 40.0%
! TGCGGCCAAGTATTTCTTTT+TGG - chr5_3:41150405-41150424 None:intergenic 40.0%
GGTCATGTTGAAAACTCAGT+AGG + chr5_3:41150583-41150602 Msa0811770:intron 40.0%
AGTTGTGATGAAAAAGGGAC+TGG - chr5_3:41150692-41150711 None:intergenic 40.0%
AAGTCTTTGCACTTGCTTCT+TGG - chr5_3:41151305-41151324 None:intergenic 40.0%
ATGTTCACAAGTAGGTTTGG+TGG - chr5_3:41151415-41151434 None:intergenic 40.0%
GGAAGAAATGGCAGTTTCAA+TGG - chr5_3:41151443-41151462 None:intergenic 40.0%
! AAACTGCCATTTCTTCCCAA+GGG + chr5_3:41151446-41151465 Msa0811770:CDS 40.0%
ATGCCGAATCTTGAAGTAGA+GGG - chr5_3:41151523-41151542 None:intergenic 40.0%
AATGCCGAATCTTGAAGTAG+AGG - chr5_3:41151524-41151543 None:intergenic 40.0%
GAACATTACATCGGCCATAT+CGG - chr5_3:41151560-41151579 None:intergenic 40.0%
! ACCCGAGTTGAACATTACAT+CGG - chr5_3:41151569-41151588 None:intergenic 40.0%
TAGTAGCAGTGGCAATAGTA+TGG + chr5_3:41151588-41151607 Msa0811770:CDS 40.0%
AGATAAAGGTGAACCTGATG+AGG + chr5_3:41151633-41151652 Msa0811770:CDS 40.0%
GAATAGCATTTCAGGGTGGT+TGG - chr5_3:41147848-41147867 None:intergenic 45.0%
CATGCTCAAATTGGTGGAAG+TGG + chr5_3:41148030-41148049 Msa0811770:CDS 45.0%
! TTGAGGATTGGTGAAATGGG+TGG + chr5_3:41148198-41148217 Msa0811770:CDS 45.0%
! TGAGGATTGGTGAAATGGGT+GGG + chr5_3:41148199-41148218 Msa0811770:CDS 45.0%
GCTGTCTTGTGTGAATGATG+AGG - chr5_3:41149733-41149752 None:intergenic 45.0%
TGTTGTGCCTTCACATGCAT+TGG + chr5_3:41150271-41150290 Msa0811770:intron 45.0%
CAAGTAAAGCCATCTTCTGG+TGG - chr5_3:41150370-41150389 None:intergenic 45.0%
! CACCAGAAGATGGCTTTACT+TGG + chr5_3:41150368-41150387 Msa0811770:CDS 45.0%
CTCCAAGTAAAGCCATCTTC+TGG - chr5_3:41150373-41150392 None:intergenic 45.0%
GTGAACTTAGCTCAGTTGGT+AGG + chr5_3:41151102-41151121 Msa0811770:intron 45.0%
!! TTCACAAGTAGGTTTGGTGG+TGG - chr5_3:41151412-41151431 None:intergenic 45.0%
! GAAACTGCCATTTCTTCCCA+AGG + chr5_3:41151445-41151464 Msa0811770:CDS 45.0%
GGACCCTCTACTTCAAGATT+CGG + chr5_3:41151517-41151536 Msa0811770:CDS 45.0%
!! ATTCGGCATTGATTATCCGG+TGG + chr5_3:41151534-41151553 Msa0811770:CDS 45.0%
GGCCGATGTAATGTTCAACT+CGG + chr5_3:41151564-41151583 Msa0811770:CDS 45.0%
GCCGATGTAATGTTCAACTC+GGG + chr5_3:41151565-41151584 Msa0811770:CDS 45.0%
ATGATAAGTGGCGGTGGTGA+TGG + chr5_3:41148141-41148160 Msa0811770:CDS 50.0%
GCGGTGACGTTCAGTTGTTA+AGG + chr5_3:41148163-41148182 Msa0811770:CDS 50.0%
GATTGGTGAAATGGGTGGGA+GGG + chr5_3:41148203-41148222 Msa0811770:CDS 50.0%
TGAAATGGGTGGGAGGGATA+TGG + chr5_3:41148209-41148228 Msa0811770:CDS 50.0%
TCTTCCTCCGTCAACCACTT+TGG - chr5_3:41149476-41149495 None:intergenic 50.0%
GGTTGACGGAGGAAGAGTTA+AGG + chr5_3:41149480-41149499 Msa0811770:intron 50.0%
GCTGCTACCAATGCATGTGA+AGG - chr5_3:41150281-41150300 None:intergenic 50.0%
! TCACATGCATTGGTAGCAGC+AGG + chr5_3:41150281-41150300 Msa0811770:intron 50.0%
ATGCATCCAGCACCTCAGAT+TGG + chr5_3:41150331-41150350 Msa0811770:CDS 50.0%
! GTGTTTCCAATCTGAGGTGC+TGG - chr5_3:41150340-41150359 None:intergenic 50.0%
ACTGAGATGCCACCAGAAGA+TGG + chr5_3:41150358-41150377 Msa0811770:CDS 50.0%
CCAACTGAGCTAAGTTCACG+AGG - chr5_3:41151101-41151120 None:intergenic 50.0%
CCTCGTGAACTTAGCTCAGT+TGG + chr5_3:41151098-41151117 Msa0811770:intron 50.0%
CTTTGCACTTGCTTCTTGGC+TGG - chr5_3:41151301-41151320 None:intergenic 50.0%
!! GGTGGTGGTGGATATGATGA+TGG - chr5_3:41151397-41151416 None:intergenic 50.0%
!! ACAAGTAGGTTTGGTGGTGG+TGG - chr5_3:41151409-41151428 None:intergenic 50.0%
TGATTATCCGGTGGCCGATA+TGG + chr5_3:41151543-41151562 Msa0811770:CDS 50.0%
TTCAACTCGGGTAGTAGCAG+TGG + chr5_3:41151577-41151596 Msa0811770:CDS 50.0%
! TCAGGGTGGTTGGCCATGTT+GGG - chr5_3:41147838-41147857 None:intergenic 55.0%
! TTCAGGGTGGTTGGCCATGT+TGG - chr5_3:41147839-41147858 None:intergenic 55.0%
!! ATAAGTGGCGGTGGTGATGG+CGG + chr5_3:41148144-41148163 Msa0811770:CDS 55.0%
! GGATTGGTGAAATGGGTGGG+AGG + chr5_3:41148202-41148221 Msa0811770:CDS 55.0%
ATGGGTGGGAGGGATATGGA+AGG + chr5_3:41148213-41148232 Msa0811770:CDS 55.0%
AGGACCAAAGTGGTTGACGG+AGG + chr5_3:41149469-41149488 Msa0811770:intron 55.0%
TACTTGGCCGCAAGTACCCA+AGG + chr5_3:41150413-41150432 Msa0811770:CDS 55.0%
! CTGCCATTTCTTCCCAAGGG+TGG + chr5_3:41151449-41151468 Msa0811770:CDS 55.0%
TGGCCACCCTTGGGAAGAAA+TGG - chr5_3:41151455-41151474 None:intergenic 55.0%
GGGGTTCGAGGTTTGAACCC+CGG - chr5_3:41150078-41150097 None:intergenic 60.0%
GGGGTTCAAACCTCGAACCC+CGG + chr5_3:41150077-41150096 Msa0811770:intron 60.0%
TTTATGGTGGCCGGGGTTCG+AGG - chr5_3:41150090-41150109 None:intergenic 60.0%
TTCCCAAGGGTGGCCATCTG+CGG + chr5_3:41151459-41151478 Msa0811770:CDS 60.0%
AGGTCGTGGTTCACCGCAGA+TGG - chr5_3:41151475-41151494 None:intergenic 60.0%
TGCGGTGAACCACGACCTCA+GGG + chr5_3:41151477-41151496 Msa0811770:CDS 60.0%
ACATCGGCCATATCGGCCAC+CGG - chr5_3:41151553-41151572 None:intergenic 60.0%
CACCGCAGATGGCCACCCTT+GGG - chr5_3:41151464-41151483 None:intergenic 65.0%
TCACCGCAGATGGCCACCCT+TGG - chr5_3:41151465-41151484 None:intergenic 65.0%
CTGCGGTGAACCACGACCTC+AGG + chr5_3:41151476-41151495 Msa0811770:CDS 65.0%
GCGGTGAACCACGACCTCAG+GGG + chr5_3:41151478-41151497 Msa0811770:CDS 65.0%
GTGAACCACGACCTCAGGGG+CGG + chr5_3:41151481-41151500 Msa0811770:CDS 65.0%
CACGACCTCAGGGGCGGAGA+CGG + chr5_3:41151487-41151506 Msa0811770:CDS 70.0%
CAGTACCGTCTCCGCCCCTG+AGG - chr5_3:41151495-41151514 None:intergenic 70.0%
CTCAGGGGCGGAGACGGTAC+TGG + chr5_3:41151493-41151512 Msa0811770:CDS 70.0%
! AGGGGCGGAGACGGTACTGG+TGG + chr5_3:41151496-41151515 Msa0811770:CDS 70.0%
CGTCTCCGCCCCTGAGGTCG+TGG - chr5_3:41151489-41151508 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 41147769 41151666 41147769 ID=Msa0811770;Name=Msa0811770
chr5_3 mRNA 41147769 41151666 41147769 ID=Msa0811770-mRNA-1;Parent=Msa0811770;Name=Msa0811770-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|362
chr5_3 exon 41147769 41148310 41147769 ID=Msa0811770-mRNA-1:exon:12666;Parent=Msa0811770-mRNA-1
chr5_3 exon 41150297 41150434 41150297 ID=Msa0811770-mRNA-1:exon:12667;Parent=Msa0811770-mRNA-1
chr5_3 exon 41151258 41151666 41151258 ID=Msa0811770-mRNA-1:exon:12668;Parent=Msa0811770-mRNA-1
chr5_3 CDS 41147769 41148310 41147769 ID=Msa0811770-mRNA-1:cds;Parent=Msa0811770-mRNA-1
chr5_3 CDS 41150297 41150434 41150297 ID=Msa0811770-mRNA-1:cds;Parent=Msa0811770-mRNA-1
chr5_3 CDS 41151258 41151666 41151258 ID=Msa0811770-mRNA-1:cds;Parent=Msa0811770-mRNA-1
Gene Sequence

>Msa0811770

ATGGAAGAAGTCATGAATTTCATCATGCGTGCTTTTGAATTAGCAAAAAATCTTGAACTAGAACTACCCAACATGGCCAACCACCCTGAAATGCTATTCTCATCCATTGATGATGTAGAAAAAGCATTTAATGCTGCCAAAGAAAGAGTAATGATGATGTTGTCATCACAACATGACACAACAACAACAACAACAACAACAAAACCTTCTAATTCCTTTGCTCAAATTCTGTCTCATGATGTTTTCATGCAAAAAACTCAACATGCTCAAATTGGTGGAAGTGGAAGTGCAATTTCAATGCATGCACATTCAATGGATCAATTGCTTCTAATGCAACACCCTTTTGATGTGAGTGTTCTAATTGAGAATAAGATGATAAGTGGCGGTGGTGATGGCGGTGACGTTCAGTTGTTAAGGTCTAGGGAAACTTTGAGGATTGGTGAAATGGGTGGGAGGGATATGGAAGGTTTAGATAGATCAAAAGGGTTAGAAGGAGATCAAATGCAAGCAATAGAAACACCACCTTCAAGACCAAAAAAATGCAGCAGGAAGAATGATTTGGAGAAGAGAACAGAGATGCATCCAGCACCTCAGATTGGAAACACTGAGATGCCACCAGAAGATGGCTTTACTTGGAGAAAATATGGCCAAAAAGAAATACTTGGCCGCAAGTACCCAAGAAGTTACTATAGGTGCACACACCAAAAATTATATTTGTGTCCAGCCAAGAAGCAAGTGCAAAGACTTGATGAAAACCCTAACATAGTTGAAGTAACATATAGAGGTGAACACATTTGTCACAAATCCTTAACAGCACCATCATCATATCCACCACCACCAAACCTACTTGTGAACATTAGTACCATTGAAACTGCCATTTCTTCCCAAGGGTGGCCATCTGCGGTGAACCACGACCTCAGGGGCGGAGACGGTACTGGTGGACCCTCTACTTCAAGATTCGGCATTGATTATCCGGTGGCCGATATGGCCGATGTAATGTTCAACTCGGGTAGTAGCAGTGGCAATAGTATGGAATCACTCTTTTATCTAACTGAAGATAAAGGTGAACCTGATGAGGAGAAAAACTGA
Protein sequence

>Msa0811770

MEEVMNFIMRAFELAKNLELELPNMANHPEMLFSSIDDVEKAFNAAKERVMMMLSSQHDTTTTTTTTKPSNSFAQILSHDVFMQKTQHAQIGGSGSAISMHAHSMDQLLLMQHPFDVSVLIENKMISGGGDGGDVQLLRSRETLRIGEMGGRDMEGLDRSKGLEGDQMQAIETPPSRPKKCSRKNDLEKRTEMHPAPQIGNTEMPPEDGFTWRKYGQKEILGRKYPRSYYRCTHQKLYLCPAKKQVQRLDENPNIVEVTYRGEHICHKSLTAPSSYPPPPNLLVNISTIETAISSQGWPSAVNHDLRGGDGTGGPSTSRFGIDYPVADMADVMFNSGSSSGNSMESLFYLTEDKGEPDEEKN*