AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0815330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815330 MtrunA17_Chr5g0433481 94.000 150 9 0 1 150 1 150 5.97e-103 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815330 AT1G65820.1 66.667 144 48 0 1 144 1 144 8.42e-68 202
Msa0815330 AT1G65820.2 60.000 160 48 1 1 144 1 160 1.72e-63 192
Msa0815330 AT1G65820.3 70.492 122 36 0 1 122 1 122 8.35e-61 186

Find 73 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTCATGTTGATGATTT+TGG 0.072271 5_3:+48875593 Msa0815330:CDS
TTGGCCAAATATGTTGTTTC+TGG 0.148618 5_3:-48876593 None:intergenic
AATCATCAACATGAAGAAAA+TGG 0.174934 5_3:-48875589 None:intergenic
ATACGGTTTGGATACGTTTA+TGG 0.180137 5_3:-48876454 None:intergenic
TTACCCAGAAACAACATATT+TGG 0.195988 5_3:+48876589 Msa0815330:three_prime_UTR
GAGTATTAGCCTTTCTTATT+TGG 0.212862 5_3:+48876381 Msa0815330:three_prime_UTR
CGCAGCATATATCCCAAGTA+TGG 0.286186 5_3:-48876483 None:intergenic
GCACAAACCAAACTTGGATT+TGG 0.295085 5_3:-48876556 None:intergenic
CCCGAGTTTCAGACGGTTCT+CGG 0.306867 5_3:-48875709 None:intergenic
AGTTCAAATCACTGGTTTGC+AGG 0.309105 5_3:-48875893 None:intergenic
CATTATTCATTTGCAGTCCT+TGG 0.316092 5_3:-48875969 None:intergenic
AGCCTTTGTATGTTACAATA+AGG 0.341454 5_3:+48876027 Msa0815330:three_prime_UTR
TTTCAGATTCAGAAGCATAA+AGG 0.349675 5_3:-48873228 None:intergenic
ACCGTATTTGCACCCATACT+TGG 0.354211 5_3:+48876470 Msa0815330:three_prime_UTR
GCATCGTTTCCAGAGAGTTT+TGG 0.363401 5_3:-48875566 None:intergenic
ATGGTGTCTACACTTTCATT+TGG 0.365189 5_3:+48875851 Msa0815330:CDS
CCTATCATTTGTGCTGTCCT+TGG 0.365216 5_3:+48875630 Msa0815330:CDS
GAATTGTTACCAAAGGAATA+TGG 0.366678 5_3:+48873014 Msa0815330:CDS
GCCGGCACTACTGGGGCTTA+TGG 0.381706 5_3:+48875832 Msa0815330:CDS
CCCAAGTATGGGTGCAAATA+CGG 0.388717 5_3:-48876471 None:intergenic
CACAAACCAAACTTGGATTT+GGG 0.393070 5_3:-48876555 None:intergenic
AAGGCTAATACTCCAAAATC+TGG 0.398880 5_3:-48876371 None:intergenic
CAAAATGCACAAACCAAACT+TGG 0.399719 5_3:-48876562 None:intergenic
TGGCCAAATATGTTGTTTCT+GGG 0.400903 5_3:-48876592 None:intergenic
GTATCTCCCAAATCCAAGTT+TGG 0.402590 5_3:+48876549 Msa0815330:three_prime_UTR
CAAGCTCTTCAATTGCGTTC+AGG 0.403771 5_3:+48873261 Msa0815330:CDS
TTCAGATTCAGAAGCATAAA+GGG 0.404409 5_3:-48873227 None:intergenic
GCCACAAAGCCATATTCCTT+TGG 0.406868 5_3:-48873023 None:intergenic
TTGGCCTTGTTTAACAGTAA+AGG 0.430630 5_3:+48876400 Msa0815330:three_prime_UTR
ATCATCAACATGAAGAAAAT+GGG 0.438900 5_3:-48875588 None:intergenic
CAGATGTCTCATTGCAGACT+TGG 0.440102 5_3:+48876228 Msa0815330:three_prime_UTR
CCAAGGACAGCACAAATGAT+AGG 0.451302 5_3:-48875630 None:intergenic
GAGATAAAAGTTCAAATCAC+TGG 0.454575 5_3:-48875901 None:intergenic
AACTGTAATATCTAAAATAC+AGG 0.460383 5_3:-48876525 None:intergenic
CCGAGAACCGTCTGAAACTC+GGG 0.463273 5_3:+48875709 Msa0815330:CDS
GAGAGGGCACCAAAACTCTC+TGG 0.465785 5_3:+48875557 Msa0815330:intron
CCGAGTTTCAGACGGTTCTC+GGG 0.472239 5_3:-48875708 None:intergenic
TGTCTACACTTTCATTTGGA+TGG 0.477493 5_3:+48875855 Msa0815330:CDS
GTATGGGTGCAAATACGGTT+TGG 0.478873 5_3:-48876466 None:intergenic
CAATGAGATGAGTAATGTAC+TGG 0.484454 5_3:-48872929 None:intergenic
CCCGAGAACCGTCTGAAACT+CGG 0.487007 5_3:+48875708 Msa0815330:CDS
GCGAGCTTTGCCAACTTGAA+AGG 0.489911 5_3:-48873087 None:intergenic
ACCAAAGGAATATGGCTTTG+TGG 0.496319 5_3:+48873022 Msa0815330:CDS
ACCATAAGCCCCAGTAGTGC+CGG 0.497715 5_3:-48875833 None:intergenic
GAAAGGTCATGAAGAAATTG+AGG 0.509106 5_3:-48873070 None:intergenic
GATTCAGAAGCATAAAGGGT+TGG 0.509643 5_3:-48873223 None:intergenic
TGCTAAAAGTATTTAAGTTG+TGG 0.514267 5_3:+48876257 Msa0815330:three_prime_UTR
TTACTTTGACCACTAGTACA+TGG 0.520685 5_3:-48876291 None:intergenic
TTCTTCATGACCTTTCAAGT+TGG 0.523551 5_3:+48873077 Msa0815330:CDS
ACCTCATCATCAAGAGGCTA+TGG 0.525062 5_3:-48875929 None:intergenic
TTTAAGTTGTGGTAGAACCT+TGG 0.531795 5_3:+48876268 Msa0815330:three_prime_UTR
CCGTATTTGCACCCATACTT+GGG 0.532717 5_3:+48876471 Msa0815330:three_prime_UTR
CTGAACGCAATTGAAGAGCT+TGG 0.540036 5_3:-48873260 None:intergenic
TAAACAAGGCCAAATAAGAA+AGG 0.541354 5_3:-48876390 None:intergenic
AATTGACGACTACACTCTGC+AGG 0.557869 5_3:-48876175 None:intergenic
GAGTGTAGTCGTCAATTCAC+AGG 0.564595 5_3:+48876181 Msa0815330:three_prime_UTR
TGAGTAATGTACTGGTTTCG+TGG 0.568507 5_3:-48872921 None:intergenic
TTAATAACCTCATCATCAAG+AGG 0.568571 5_3:-48875935 None:intergenic
ACCATAGCCTCTTGATGATG+AGG 0.570853 5_3:+48875928 Msa0815330:three_prime_UTR
ACGGTTCTCGGGTTTGCCTG+TGG 0.592329 5_3:-48875697 None:intergenic
GGTCATGAAGAAATTGAGGA+AGG 0.595983 5_3:-48873066 None:intergenic
GCTAGATACTTCTACTTCGT+AGG 0.595990 5_3:+48875669 Msa0815330:CDS
GCAGCATATATCCCAAGTAT+GGG 0.604149 5_3:-48876482 None:intergenic
GAACCTTGGCCATGTACTAG+TGG 0.609927 5_3:+48876282 Msa0815330:three_prime_UTR
ACATGTTTAGAGTTTCAACA+TGG 0.610280 5_3:+48876050 Msa0815330:three_prime_UTR
GTCCTTATTGTAACATACAA+AGG 0.616409 5_3:-48876029 None:intergenic
TACTTCGTAGGCTATGCCAC+AGG 0.617511 5_3:+48875681 Msa0815330:CDS
TTAATCACCCGAGTTTCAGA+CGG 0.625019 5_3:-48875716 None:intergenic
TGACCACTAGTACATGGCCA+AGG 0.640168 5_3:-48876285 None:intergenic
CAACAGTGTAAAGTACTCCA+AGG 0.641397 5_3:-48875647 None:intergenic
ACTGGTAGAATTGTTACCAA+AGG 0.651792 5_3:+48873007 Msa0815330:CDS
CATGTTTAGAGTTTCAACAT+GGG 0.654346 5_3:+48876051 Msa0815330:three_prime_UTR
TATTAAATAATATAAGACCA+AGG 0.701183 5_3:+48875952 Msa0815330:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATGATATGATTAA+AGG + chr5_3:48874966-48874985 Msa0815330:intron 10.0%
!!! TTTTTAATGATATGATTAAA+GGG + chr5_3:48874967-48874986 Msa0815330:intron 10.0%
!! AAAGTAAAATAAATCATGTT+CGG - chr5_3:48873374-48873393 None:intergenic 15.0%
!! ATATTTGTAACATATCAATA+TGG - chr5_3:48873605-48873624 None:intergenic 15.0%
!! TACAAATATATATATCCTAA+AGG + chr5_3:48873616-48873635 Msa0815330:intron 15.0%
!! ACAAATATATATATCCTAAA+GGG + chr5_3:48873617-48873636 Msa0815330:intron 15.0%
!! CAATAAATTGTTAAAAAGAT+AGG - chr5_3:48874458-48874477 None:intergenic 15.0%
!!! CTATCTTTTTAACAATTTAT+TGG + chr5_3:48874456-48874475 Msa0815330:intron 15.0%
!!! TTTTAATGATATGATTAAAG+GGG + chr5_3:48874968-48874987 Msa0815330:intron 15.0%
!! TATTAAATAATATAAGACCA+AGG + chr5_3:48875952-48875971 Msa0815330:three_prime_UTR 15.0%
!!! ATTTGTTTCTTGTTTTTTCT+GGG - chr5_3:48872966-48872985 None:intergenic 20.0%
!!! ATTTTACAAAATAAACTGAC+TGG + chr5_3:48873417-48873436 Msa0815330:intron 20.0%
!! ATTTAGTATTAACAATTCCA+TGG + chr5_3:48873646-48873665 Msa0815330:intron 20.0%
!! AATTATTTCGACTAATCAAT+TGG + chr5_3:48873834-48873853 Msa0815330:intron 20.0%
!! TAAAATCAAACAATCTTTAC+TGG - chr5_3:48873925-48873944 None:intergenic 20.0%
!!! TTTGTTATAGAGAAAATTCT+TGG - chr5_3:48874351-48874370 None:intergenic 20.0%
!! TAACAATTTATTGGAAGATT+TGG + chr5_3:48874465-48874484 Msa0815330:intron 20.0%
!!! TTATTTTTTTGAATCAGCAA+AGG - chr5_3:48875455-48875474 None:intergenic 20.0%
!! TTGTTATAATATTCTGTGTT+TGG + chr5_3:48875526-48875545 Msa0815330:intron 20.0%
!! AATTACAGATATAACACTTA+TGG - chr5_3:48875755-48875774 None:intergenic 20.0%
!! AGTTACATATTAATCAATCA+TGG - chr5_3:48875782-48875801 None:intergenic 20.0%
!! AAATATAAAACCAAAAACAG+GGG - chr5_3:48876350-48876369 None:intergenic 20.0%
!! CAAATATAAAACCAAAAACA+GGG - chr5_3:48876351-48876370 None:intergenic 20.0%
!!! AACTGTAATATCTAAAATAC+AGG - chr5_3:48876528-48876547 None:intergenic 20.0%
!!! GATTTGTTTCTTGTTTTTTC+TGG - chr5_3:48872967-48872986 None:intergenic 25.0%
!!! GTTTTGTGATTTTGTTTACA+AGG + chr5_3:48873162-48873181 Msa0815330:intron 25.0%
! GGATAAATGTTGAATAATCT+AGG + chr5_3:48873438-48873457 Msa0815330:intron 25.0%
! AAATGTTGAATAATCTAGGA+TGG + chr5_3:48873442-48873461 Msa0815330:intron 25.0%
! TACTAAATATCATACCCTTT+AGG - chr5_3:48873634-48873653 None:intergenic 25.0%
!!! TTTAAAAGTCGATTTTGAGA+AGG + chr5_3:48873941-48873960 Msa0815330:intron 25.0%
! GGAAATTAATTTCTTCTGTT+GGG - chr5_3:48874081-48874100 None:intergenic 25.0%
! TGGAAATTAATTTCTTCTGT+TGG - chr5_3:48874082-48874101 None:intergenic 25.0%
! ACAGAAGAAATTAATTTCCA+AGG + chr5_3:48874082-48874101 Msa0815330:intron 25.0%
! AATTTATTGGAAGATTTGGA+AGG + chr5_3:48874469-48874488 Msa0815330:intron 25.0%
! AAAATCTATGTATGTGAAGT+TGG + chr5_3:48874558-48874577 Msa0815330:intron 25.0%
!! AAAGTGTTATTACTTGTGTT+TGG + chr5_3:48874711-48874730 Msa0815330:intron 25.0%
! CATTCGTAATATAAACACAA+CGG - chr5_3:48875047-48875066 None:intergenic 25.0%
! GATAGACAAAAAAAGAATCT+AGG - chr5_3:48875495-48875514 None:intergenic 25.0%
! ATCATCAACATGAAGAAAAT+GGG - chr5_3:48875591-48875610 None:intergenic 25.0%
! AATCATCAACATGAAGAAAA+TGG - chr5_3:48875592-48875611 None:intergenic 25.0%
!!! TTTCTTCATGTTGATGATTT+TGG + chr5_3:48875593-48875612 Msa0815330:CDS 25.0%
!!! TTCTTCATGTTGATGATTTT+GGG + chr5_3:48875594-48875613 Msa0815330:CDS 25.0%
! AACTGAATTTATATGCTAAC+AGG + chr5_3:48875798-48875817 Msa0815330:intron 25.0%
! ACTGAATTTATATGCTAACA+GGG + chr5_3:48875799-48875818 Msa0815330:intron 25.0%
!!! TGCTAAAAGTATTTAAGTTG+TGG + chr5_3:48876257-48876276 Msa0815330:three_prime_UTR 25.0%
! GCAAATATAAAACCAAAAAC+AGG - chr5_3:48876352-48876371 None:intergenic 25.0%
!! GTTTTATATTTGCCAGATTT+TGG + chr5_3:48876359-48876378 Msa0815330:three_prime_UTR 25.0%
!! TTTTCCTTTACTGTTAAACA+AGG - chr5_3:48876407-48876426 None:intergenic 25.0%
ACAAATCCATCATCCAAAAA+TGG + chr5_3:48872980-48872999 Msa0815330:exon 30.0%
GAATTGTTACCAAAGGAATA+TGG + chr5_3:48873014-48873033 Msa0815330:CDS 30.0%
TAAAAAACTTTGTACCTGTG+AGG - chr5_3:48873202-48873221 None:intergenic 30.0%
! TTCAGATTCAGAAGCATAAA+GGG - chr5_3:48873230-48873249 None:intergenic 30.0%
! TTTCAGATTCAGAAGCATAA+AGG - chr5_3:48873231-48873250 None:intergenic 30.0%
!! GAATAATCTAGGATGGATTT+TGG + chr5_3:48873449-48873468 Msa0815330:intron 30.0%
ATACTACCTAACAAGAAAAG+AGG - chr5_3:48873760-48873779 None:intergenic 30.0%
!! AATCAATTGGCCTTTCTAAA+AGG + chr5_3:48873847-48873866 Msa0815330:intron 30.0%
!! CAACGTTATACCTTTTAGAA+AGG - chr5_3:48873860-48873879 None:intergenic 30.0%
! CTTTCTAAAAGGTATAACGT+TGG + chr5_3:48873858-48873877 Msa0815330:intron 30.0%
!! GAGGTTTTTGGATATATCAA+TGG + chr5_3:48873983-48874002 Msa0815330:intron 30.0%
! TCAAAATTGGTTTAACACAG+AGG + chr5_3:48874242-48874261 Msa0815330:intron 30.0%
CAAAAGAAATGTGATACCAA+TGG + chr5_3:48874688-48874707 Msa0815330:intron 30.0%
CAAGTAATAACACTTTCCAT+TGG - chr5_3:48874707-48874726 None:intergenic 30.0%
ACAATGTAAAAGAAGGTGAT+TGG - chr5_3:48874759-48874778 None:intergenic 30.0%
CCAAAGAACAATGTAAAAGA+AGG - chr5_3:48874766-48874785 None:intergenic 30.0%
! CCTTCTTTTACATTGTTCTT+TGG + chr5_3:48874763-48874782 Msa0815330:intron 30.0%
! TTTTACATTGTTCTTTGGCA+AGG + chr5_3:48874768-48874787 Msa0815330:intron 30.0%
TGAATAAGGAAATCCGAAAA+AGG + chr5_3:48874885-48874904 Msa0815330:intron 30.0%
! AATCAACCTCAAACCTTTTT+CGG - chr5_3:48874901-48874920 None:intergenic 30.0%
! AAAAAGGTTTGAGGTTGATT+TGG + chr5_3:48874901-48874920 Msa0815330:intron 30.0%
TAATGATATGATTAAAGGGG+TGG + chr5_3:48874971-48874990 Msa0815330:intron 30.0%
CGTTGTGTTTATATTACGAA+TGG + chr5_3:48875045-48875064 Msa0815330:intron 30.0%
! GTTTATATTACGAATGGACT+TGG + chr5_3:48875051-48875070 Msa0815330:intron 30.0%
AAAGGAAGAAACAAGTACAA+AGG - chr5_3:48875388-48875407 None:intergenic 30.0%
! CTTCCTTTATGCAAACTTTT+TGG + chr5_3:48875400-48875419 Msa0815330:intron 30.0%
CTGAATTTATATGCTAACAG+GGG + chr5_3:48875800-48875819 Msa0815330:intron 30.0%
GAGATAAAAGTTCAAATCAC+TGG - chr5_3:48875904-48875923 None:intergenic 30.0%
TTAATAACCTCATCATCAAG+AGG - chr5_3:48875938-48875957 None:intergenic 30.0%
AGCCTTTGTATGTTACAATA+AGG + chr5_3:48876027-48876046 Msa0815330:three_prime_UTR 30.0%
GTCCTTATTGTAACATACAA+AGG - chr5_3:48876032-48876051 None:intergenic 30.0%
! ACATGTTTAGAGTTTCAACA+TGG + chr5_3:48876050-48876069 Msa0815330:three_prime_UTR 30.0%
! CATGTTTAGAGTTTCAACAT+GGG + chr5_3:48876051-48876070 Msa0815330:three_prime_UTR 30.0%
!! GAGTATTAGCCTTTCTTATT+TGG + chr5_3:48876381-48876400 Msa0815330:three_prime_UTR 30.0%
TAAACAAGGCCAAATAAGAA+AGG - chr5_3:48876393-48876412 None:intergenic 30.0%
TTACCCAGAAACAACATATT+TGG + chr5_3:48876589-48876608 Msa0815330:three_prime_UTR 30.0%
CAATGAGATGAGTAATGTAC+TGG - chr5_3:48872932-48872951 None:intergenic 35.0%
ACTGGTAGAATTGTTACCAA+AGG + chr5_3:48873007-48873026 Msa0815330:CDS 35.0%
GAAAGGTCATGAAGAAATTG+AGG - chr5_3:48873073-48873092 None:intergenic 35.0%
! TTCTTCATGACCTTTCAAGT+TGG + chr5_3:48873077-48873096 Msa0815330:CDS 35.0%
! TGTTTGTTGAAATTCCTCAC+AGG + chr5_3:48873185-48873204 Msa0815330:intron 35.0%
TGATTCCTATGTTCCTTGTT+GGG + chr5_3:48873550-48873569 Msa0815330:intron 35.0%
TTAACAATTCCATGGCAATG+AGG + chr5_3:48873654-48873673 Msa0815330:intron 35.0%
CGATAATCTTTCAACTCCAA+AGG - chr5_3:48873736-48873755 None:intergenic 35.0%
! TATCGTCCTCTTTTCTTGTT+AGG + chr5_3:48873751-48873770 Msa0815330:intron 35.0%
!! TTTTGAGAAGGCTTTTGACT+CGG + chr5_3:48873953-48873972 Msa0815330:intron 35.0%
GATATATCAATGGTGAGAGT+TGG + chr5_3:48873993-48874012 Msa0815330:intron 35.0%
ATGTCGATACTTGTGAATGA+TGG + chr5_3:48874055-48874074 Msa0815330:intron 35.0%
! AAGGATTTTGTGAACCTAGA+GGG + chr5_3:48874210-48874229 Msa0815330:intron 35.0%
!! TACAAGTATGGGTTTTTGGA+GGG + chr5_3:48874287-48874306 Msa0815330:intron 35.0%
AAATAACCAAGACAGAGATG+TGG + chr5_3:48874368-48874387 Msa0815330:intron 35.0%
ATGTGGATAGATGGTTCAAA+TGG + chr5_3:48874385-48874404 Msa0815330:intron 35.0%
TGTGGATAGATGGTTCAAAT+GGG + chr5_3:48874386-48874405 Msa0815330:intron 35.0%
AAGATTTGGAAGGCTATACA+AGG + chr5_3:48874479-48874498 Msa0815330:intron 35.0%
! CAAGGCATCAAGAATATGAT+AGG + chr5_3:48874497-48874516 Msa0815330:intron 35.0%
! AAGAATATGATAGGTGGACT+TGG + chr5_3:48874506-48874525 Msa0815330:intron 35.0%
TCTATGTATGTGAAGTTGGA+AGG + chr5_3:48874562-48874581 Msa0815330:intron 35.0%
AGAGGATGTTTCGTCAAATT+TGG + chr5_3:48874630-48874649 Msa0815330:intron 35.0%
TTCGTCAAATTTGGAAGTCT+AGG + chr5_3:48874639-48874658 Msa0815330:intron 35.0%
TCGTCAAATTTGGAAGTCTA+GGG + chr5_3:48874640-48874659 Msa0815330:intron 35.0%
!! TACTTGTGTTTGGTGTATGA+CGG + chr5_3:48874721-48874740 Msa0815330:intron 35.0%
GTTCTTTGGCAAGGAATATT+TGG + chr5_3:48874777-48874796 Msa0815330:intron 35.0%
TTTGGCAAGGAATATTTGGT+TGG + chr5_3:48874781-48874800 Msa0815330:intron 35.0%
ATATTTGGTTGGAACTGATG+TGG + chr5_3:48874792-48874811 Msa0815330:intron 35.0%
! TCCAAACTTGTTTGTCCATT+GGG + chr5_3:48874841-48874860 Msa0815330:intron 35.0%
!! ACAAAGGTGCTGTAAATATG+TGG - chr5_3:48875372-48875391 None:intergenic 35.0%
GCACCAAAAAGTTTGCATAA+AGG - chr5_3:48875406-48875425 None:intergenic 35.0%
!!! TTCATGTTGATGATTTTGGG+AGG + chr5_3:48875597-48875616 Msa0815330:CDS 35.0%
!!! TCATGTTGATGATTTTGGGA+GGG + chr5_3:48875598-48875617 Msa0815330:CDS 35.0%
!!! TAACAGGGGATTTTTTATGC+CGG + chr5_3:48875814-48875833 Msa0815330:intron 35.0%
ATGGTGTCTACACTTTCATT+TGG + chr5_3:48875851-48875870 Msa0815330:CDS 35.0%
TGTCTACACTTTCATTTGGA+TGG + chr5_3:48875855-48875874 Msa0815330:CDS 35.0%
CATTATTCATTTGCAGTCCT+TGG - chr5_3:48875972-48875991 None:intergenic 35.0%
!! TTTAAGTTGTGGTAGAACCT+TGG + chr5_3:48876268-48876287 Msa0815330:three_prime_UTR 35.0%
TTACTTTGACCACTAGTACA+TGG - chr5_3:48876294-48876313 None:intergenic 35.0%
! TACACTATTTCCCCTGTTTT+TGG + chr5_3:48876337-48876356 Msa0815330:three_prime_UTR 35.0%
AAGGCTAATACTCCAAAATC+TGG - chr5_3:48876374-48876393 None:intergenic 35.0%
!! TTGGCCTTGTTTAACAGTAA+AGG + chr5_3:48876400-48876419 Msa0815330:three_prime_UTR 35.0%
! ATACGGTTTGGATACGTTTA+TGG - chr5_3:48876457-48876476 None:intergenic 35.0%
CACAAACCAAACTTGGATTT+GGG - chr5_3:48876558-48876577 None:intergenic 35.0%
CAAAATGCACAAACCAAACT+TGG - chr5_3:48876565-48876584 None:intergenic 35.0%
!! TGAGTAATGTACTGGTTTCG+TGG - chr5_3:48872924-48872943 None:intergenic 40.0%
! ACCAAAGGAATATGGCTTTG+TGG + chr5_3:48873022-48873041 Msa0815330:CDS 40.0%
GGTCATGAAGAAATTGAGGA+AGG - chr5_3:48873069-48873088 None:intergenic 40.0%
! GATTCAGAAGCATAAAGGGT+TGG - chr5_3:48873226-48873245 None:intergenic 40.0%
!! GTGGAAGTGTCAATGAGTAA+TGG - chr5_3:48873313-48873332 None:intergenic 40.0%
ATCTTATGCCCTGTTTGGTT+TGG - chr5_3:48873338-48873357 None:intergenic 40.0%
TACGAATCTTATGCCCTGTT+TGG - chr5_3:48873343-48873362 None:intergenic 40.0%
GTGATTCCTATGTTCCTTGT+TGG + chr5_3:48873549-48873568 Msa0815330:intron 40.0%
GATTCCTATGTTCCTTGTTG+GGG + chr5_3:48873551-48873570 Msa0815330:intron 40.0%
TATACCCCAACAAGGAACAT+AGG - chr5_3:48873558-48873577 None:intergenic 40.0%
TCATCAACTATACCCCAACA+AGG - chr5_3:48873566-48873585 None:intergenic 40.0%
AAATACGCCAACAAGGCTAT+GGG - chr5_3:48873685-48873704 None:intergenic 40.0%
AAAATACGCCAACAAGGCTA+TGG - chr5_3:48873686-48873705 None:intergenic 40.0%
!!! AGCCTTGTTGGCGTATTTTT+TGG + chr5_3:48873687-48873706 Msa0815330:intron 40.0%
CACCAAAAAATACGCCAACA+AGG - chr5_3:48873692-48873711 None:intergenic 40.0%
!! CCAAAGGTGAGTTGACTTTT+GGG - chr5_3:48873720-48873739 None:intergenic 40.0%
!! TCCAAAGGTGAGTTGACTTT+TGG - chr5_3:48873721-48873740 None:intergenic 40.0%
! AAAGGTATAACGTTGGTCGA+TGG + chr5_3:48873865-48873884 Msa0815330:intron 40.0%
AAGGTATAACGTTGGTCGAT+GGG + chr5_3:48873866-48873885 Msa0815330:intron 40.0%
!! TTCCAAGGTTACCGATTTGT+TGG + chr5_3:48874097-48874116 Msa0815330:intron 40.0%
TTCCAACAAATCGGTAACCT+TGG - chr5_3:48874102-48874121 None:intergenic 40.0%
!! AAGGTTACCGATTTGTTGGA+AGG + chr5_3:48874101-48874120 Msa0815330:intron 40.0%
AACACCTCCTTCCAACAAAT+CGG - chr5_3:48874111-48874130 None:intergenic 40.0%
GGTGGAGAAATATGGTCAAA+AGG + chr5_3:48874131-48874150 Msa0815330:intron 40.0%
!! TCAAAAGGCTACCGATTTGT+TGG + chr5_3:48874146-48874165 Msa0815330:intron 40.0%
ACTACCACTCACCAACAAAT+CGG - chr5_3:48874160-48874179 None:intergenic 40.0%
CACCATCTAGAAGCAAAATG+CGG - chr5_3:48874189-48874208 None:intergenic 40.0%
!!! TTTTGCTTCTAGATGGTGGA+AGG + chr5_3:48874191-48874210 Msa0815330:intron 40.0%
! GAAGGATTTTGTGAACCTAG+AGG + chr5_3:48874209-48874228 Msa0815330:intron 40.0%
! ATTTTGTGAACCTAGAGGGA+TGG + chr5_3:48874214-48874233 Msa0815330:intron 40.0%
!! GTAGTGAGGAAAGTTGGTAA+CGG + chr5_3:48874264-48874283 Msa0815330:intron 40.0%
!! AGTTGGTAACGGTACAAGTA+TGG + chr5_3:48874275-48874294 Msa0815330:intron 40.0%
!! GTTGGTAACGGTACAAGTAT+GGG + chr5_3:48874276-48874295 Msa0815330:intron 40.0%
! ACGGTACAAGTATGGGTTTT+TGG + chr5_3:48874283-48874302 Msa0815330:intron 40.0%
!! GTACAAGTATGGGTTTTTGG+AGG + chr5_3:48874286-48874305 Msa0815330:intron 40.0%
ATCTATCCACATCTCTGTCT+TGG - chr5_3:48874377-48874396 None:intergenic 40.0%
AAGACAGAGATGTGGATAGA+TGG + chr5_3:48874376-48874395 Msa0815330:intron 40.0%
GTGGATAGATGGTTCAAATG+GGG + chr5_3:48874387-48874406 Msa0815330:intron 40.0%
TGGATAGATGGTTCAAATGG+GGG + chr5_3:48874388-48874407 Msa0815330:intron 40.0%
GGCATCAAGAATATGATAGG+TGG + chr5_3:48874500-48874519 Msa0815330:intron 40.0%
ATCGTACGAAGGATGAAAAG+AGG + chr5_3:48874612-48874631 Msa0815330:intron 40.0%
CAATGGACAAACAAGTTTGG+AGG - chr5_3:48874842-48874861 None:intergenic 40.0%
! CTCCAAACTTGTTTGTCCAT+TGG + chr5_3:48874840-48874859 Msa0815330:intron 40.0%
TCCCAATGGACAAACAAGTT+TGG - chr5_3:48874845-48874864 None:intergenic 40.0%
GGAAATCCGAAAAAGGTTTG+AGG + chr5_3:48874892-48874911 Msa0815330:intron 40.0%
!! TTTGAGGTTGATTTGGTACG+CGG + chr5_3:48874908-48874927 Msa0815330:intron 40.0%
TGATATGATTAAAGGGGTGG+AGG + chr5_3:48874974-48874993 Msa0815330:intron 40.0%
! AGGAGGTGAAAGTTATTTCG+CGG + chr5_3:48874994-48875013 Msa0815330:intron 40.0%
!!! GAGTTTGGTGTTTTGCTAAG+AGG + chr5_3:48875098-48875117 Msa0815330:intron 40.0%
!! TTGGTGTTTTGCTAAGAGGT+TGG + chr5_3:48875102-48875121 Msa0815330:intron 40.0%
! TGGTGTTTTGCTAAGAGGTT+GGG + chr5_3:48875103-48875122 Msa0815330:intron 40.0%
! CAACAGTGTAAAGTACTCCA+AGG - chr5_3:48875650-48875669 None:intergenic 40.0%
GCTAGATACTTCTACTTCGT+AGG + chr5_3:48875669-48875688 Msa0815330:CDS 40.0%
TTAATCACCCGAGTTTCAGA+CGG - chr5_3:48875719-48875738 None:intergenic 40.0%
!!! ATTTTTTATGCCGGCACTAC+TGG + chr5_3:48875823-48875842 Msa0815330:CDS 40.0%
!!! TTTTTTATGCCGGCACTACT+GGG + chr5_3:48875824-48875843 Msa0815330:CDS 40.0%
!! AGTTCAAATCACTGGTTTGC+AGG - chr5_3:48875896-48875915 None:intergenic 40.0%
GCAGCATATATCCCAAGTAT+GGG - chr5_3:48876485-48876504 None:intergenic 40.0%
GTATCTCCCAAATCCAAGTT+TGG + chr5_3:48876549-48876568 Msa0815330:three_prime_UTR 40.0%
GCACAAACCAAACTTGGATT+TGG - chr5_3:48876559-48876578 None:intergenic 40.0%
!!! GTGTCGCCATTTTTGGATGA+TGG - chr5_3:48872989-48873008 None:intergenic 45.0%
TCATCCAAAAATGGCGACAC+TGG + chr5_3:48872989-48873008 Msa0815330:exon 45.0%
!! TCTACCAGTGTCGCCATTTT+TGG - chr5_3:48872996-48873015 None:intergenic 45.0%
GCCACAAAGCCATATTCCTT+TGG - chr5_3:48873026-48873045 None:intergenic 45.0%
CTGAACGCAATTGAAGAGCT+TGG - chr5_3:48873263-48873282 None:intergenic 45.0%
CAAGCTCTTCAATTGCGTTC+AGG + chr5_3:48873261-48873280 Msa0815330:CDS 45.0%
TTCCACAGCCAAACCAAACA+GGG + chr5_3:48873327-48873346 Msa0815330:intron 45.0%
AATACGCCAACAAGGCTATG+GGG - chr5_3:48873684-48873703 None:intergenic 45.0%
CCCAAAAGTCAACTCACCTT+TGG + chr5_3:48873717-48873736 Msa0815330:intron 45.0%
TATTGACCAACCTCCTAGCT+AGG + chr5_3:48873788-48873807 Msa0815330:intron 45.0%
AGGTATAACGTTGGTCGATG+GGG + chr5_3:48873867-48873886 Msa0815330:intron 45.0%
!! ATGGTGAGAGTTGGTATGTG+CGG + chr5_3:48874002-48874021 Msa0815330:intron 45.0%
!! GTTACCGATTTGTTGGAAGG+AGG + chr5_3:48874104-48874123 Msa0815330:intron 45.0%
!! GATTTGTTGGAAGGAGGTGT+TGG + chr5_3:48874110-48874129 Msa0815330:intron 45.0%
!! GAGGTGTTGGTGGAGAAATA+TGG + chr5_3:48874123-48874142 Msa0815330:intron 45.0%
! TGCCGCATTTTGCTTCTAGA+TGG + chr5_3:48874184-48874203 Msa0815330:intron 45.0%
! CGCATTTTGCTTCTAGATGG+TGG + chr5_3:48874187-48874206 Msa0815330:intron 45.0%
! AGGGATGGCTAGCTCAAAAT+TGG + chr5_3:48874229-48874248 Msa0815330:intron 45.0%
GGTTTAACACAGAGGTAGTG+AGG + chr5_3:48874250-48874269 Msa0815330:intron 45.0%
ACAGAGGTAGTGAGGAAAGT+TGG + chr5_3:48874258-48874277 Msa0815330:intron 45.0%
!! AAGTATGGGTTTTTGGAGGG+TGG + chr5_3:48874290-48874309 Msa0815330:intron 45.0%
!! GAGAGGAATGGTGTCATTCA+TGG + chr5_3:48874317-48874336 Msa0815330:intron 45.0%
ATAGATGGTTCAAATGGGGG+AGG + chr5_3:48874391-48874410 Msa0815330:intron 45.0%
TAGATGGTTCAAATGGGGGA+GGG + chr5_3:48874392-48874411 Msa0815330:intron 45.0%
GAGGCGAGATTTCTTCGTAT+GGG + chr5_3:48874429-48874448 Msa0815330:intron 45.0%
! TGATAGGTGGACTTGGAAGT+TGG + chr5_3:48874513-48874532 Msa0815330:intron 45.0%
ACTTGGAAGTTGGAGGAAGT+AGG + chr5_3:48874523-48874542 Msa0815330:intron 45.0%
CTTGGAAGTTGGAGGAAGTA+GGG + chr5_3:48874524-48874543 Msa0815330:intron 45.0%
! TGGAGGAAGTAGGGAGTTTT+TGG + chr5_3:48874533-48874552 Msa0815330:intron 45.0%
! GGAGGAAGTAGGGAGTTTTT+GGG + chr5_3:48874534-48874553 Msa0815330:intron 45.0%
TGTGAAGTTGGAAGGCTTGA+TGG + chr5_3:48874570-48874589 Msa0815330:intron 45.0%
! TTGGAAGGCTTGATGGTAAC+TGG + chr5_3:48874577-48874596 Msa0815330:intron 45.0%
! AGGCTTGATGGTAACTGGTA+AGG + chr5_3:48874582-48874601 Msa0815330:intron 45.0%
! GGCTTGATGGTAACTGGTAA+GGG + chr5_3:48874583-48874602 Msa0815330:intron 45.0%
! TTGATGGTAACTGGTAAGGG+AGG + chr5_3:48874586-48874605 Msa0815330:intron 45.0%
!! GTTTGGTGTATGACGGAGAT+TGG + chr5_3:48874728-48874747 Msa0815330:intron 45.0%
TTTGGTTGGAACTGATGTGG+TGG + chr5_3:48874795-48874814 Msa0815330:intron 45.0%
! TGTTTGTCCATTGGGAGTGT+TGG + chr5_3:48874849-48874868 Msa0815330:intron 45.0%
!! GTTTGTCCATTGGGAGTGTT+GGG + chr5_3:48874850-48874869 Msa0815330:intron 45.0%
!! TTTGTCCATTGGGAGTGTTG+GGG + chr5_3:48874851-48874870 Msa0815330:intron 45.0%
! ACGCGGCGATTTGGAAAATT+TGG + chr5_3:48874925-48874944 Msa0815330:intron 45.0%
GAAAATTTGGCAAGCTCGCA+AGG + chr5_3:48874938-48874957 Msa0815330:intron 45.0%
TATGATTAAAGGGGTGGAGG+AGG + chr5_3:48874977-48874996 Msa0815330:intron 45.0%
! TGAAAGTTATTTCGCGGCGT+TGG + chr5_3:48875000-48875019 Msa0815330:intron 45.0%
!! TATTTCGCGGCGTTGGATTT+TGG + chr5_3:48875007-48875026 Msa0815330:intron 45.0%
!! ATTTCGCGGCGTTGGATTTT+GGG + chr5_3:48875008-48875027 Msa0815330:intron 45.0%
!!! TGGTTTTTTGGATTGCGCAC+AGG + chr5_3:48875163-48875182 Msa0815330:intron 45.0%
! TGCTGGTCTGGTTTGAGTTT+CGG + chr5_3:48875192-48875211 Msa0815330:intron 45.0%
CAAAAACTGCCAGAAACACG+CGG - chr5_3:48875258-48875277 None:intergenic 45.0%
!!! TTCTGGCAGTTTTTGGCCAT+TGG + chr5_3:48875263-48875282 Msa0815330:intron 45.0%
!! TTTTTGGCCATTGGCTGTTG+CGG + chr5_3:48875272-48875291 Msa0815330:intron 45.0%
TGTTGCGGTTTCCTTTCCTT+CGG + chr5_3:48875287-48875306 Msa0815330:intron 45.0%
! GCATCGTTTCCAGAGAGTTT+TGG - chr5_3:48875569-48875588 None:intergenic 45.0%
CCAAGGACAGCACAAATGAT+AGG - chr5_3:48875633-48875652 None:intergenic 45.0%
CCTATCATTTGTGCTGTCCT+TGG + chr5_3:48875630-48875649 Msa0815330:CDS 45.0%
! TTTTTATGCCGGCACTACTG+GGG + chr5_3:48875825-48875844 Msa0815330:CDS 45.0%
!! ACCATAGCCTCTTGATGATG+AGG + chr5_3:48875928-48875947 Msa0815330:three_prime_UTR 45.0%
ACCTCATCATCAAGAGGCTA+TGG - chr5_3:48875932-48875951 None:intergenic 45.0%
AATTGACGACTACACTCTGC+AGG - chr5_3:48876178-48876197 None:intergenic 45.0%
GAGTGTAGTCGTCAATTCAC+AGG + chr5_3:48876181-48876200 Msa0815330:three_prime_UTR 45.0%
CAGATGTCTCATTGCAGACT+TGG + chr5_3:48876228-48876247 Msa0815330:three_prime_UTR 45.0%
GTATGGGTGCAAATACGGTT+TGG - chr5_3:48876469-48876488 None:intergenic 45.0%
ACCGTATTTGCACCCATACT+TGG + chr5_3:48876470-48876489 Msa0815330:three_prime_UTR 45.0%
CCCAAGTATGGGTGCAAATA+CGG - chr5_3:48876474-48876493 None:intergenic 45.0%
CCGTATTTGCACCCATACTT+GGG + chr5_3:48876471-48876490 Msa0815330:three_prime_UTR 45.0%
CGCAGCATATATCCCAAGTA+TGG - chr5_3:48876486-48876505 None:intergenic 45.0%
!! ATATGTTAAAAATAATTAAT+TGG + chr5_3:48873511-48873530 Msa0815330:intron 5.0%
GCGAGCTTTGCCAACTTGAA+AGG - chr5_3:48873090-48873109 None:intergenic 50.0%
CTTCCACAGCCAAACCAAAC+AGG + chr5_3:48873326-48873345 Msa0815330:intron 50.0%
!!! TGAGAAGGCTTTTGACTCGG+TGG + chr5_3:48873956-48873975 Msa0815330:intron 50.0%
!!! GAGAAGGCTTTTGACTCGGT+GGG + chr5_3:48873957-48873976 Msa0815330:intron 50.0%
!! TTGTTGGAAGGAGGTGTTGG+TGG + chr5_3:48874113-48874132 Msa0815330:intron 50.0%
!! GCTACCGATTTGTTGGTGAG+TGG + chr5_3:48874153-48874172 Msa0815330:intron 50.0%
TTTGAGCTAGCCATCCCTCT+AGG - chr5_3:48874227-48874246 None:intergenic 50.0%
GGAGGCGAGATTTCTTCGTA+TGG + chr5_3:48874428-48874447 Msa0815330:intron 50.0%
! TAGGTGGACTTGGAAGTTGG+AGG + chr5_3:48874516-48874535 Msa0815330:intron 50.0%
AAGGGAGGACAATCGTACGA+AGG + chr5_3:48874601-48874620 Msa0815330:intron 50.0%
GGGAGGAGGGTCAATGAATA+AGG + chr5_3:48874871-48874890 Msa0815330:intron 50.0%
!! TGATTTGGTACGCGGCGATT+TGG + chr5_3:48874916-48874935 Msa0815330:intron 50.0%
! ACGAATGGACTTGGAACCCA+AGG + chr5_3:48875060-48875079 Msa0815330:intron 50.0%
! CGAATGGACTTGGAACCCAA+GGG + chr5_3:48875061-48875080 Msa0815330:intron 50.0%
AGCAGACAACACTGAACCGA+AGG - chr5_3:48875136-48875155 None:intergenic 50.0%
!!! CTGCTGTGCTGCTGGTTTTT+TGG + chr5_3:48875151-48875170 Msa0815330:intron 50.0%
! GCTGGTCTGGTTTGAGTTTC+GGG + chr5_3:48875193-48875212 Msa0815330:intron 50.0%
! CTGGTCTGGTTTGAGTTTCG+GGG + chr5_3:48875194-48875213 Msa0815330:intron 50.0%
! TGGTCTGGTTTGAGTTTCGG+GGG + chr5_3:48875195-48875214 Msa0815330:intron 50.0%
CATTACTGACCGCGTGTTTC+TGG + chr5_3:48875246-48875265 Msa0815330:intron 50.0%
!!! CGCGTGTTTCTGGCAGTTTT+TGG + chr5_3:48875256-48875275 Msa0815330:intron 50.0%
AAGGAAACCGCAACAGCCAA+TGG - chr5_3:48875282-48875301 None:intergenic 50.0%
GTTGCGGTTTCCTTTCCTTC+GGG + chr5_3:48875288-48875307 Msa0815330:intron 50.0%
TTGCGGTTTCCTTTCCTTCG+GGG + chr5_3:48875289-48875308 Msa0815330:intron 50.0%
! CTCTGAGTTCTAGCGGTTGT+GGG + chr5_3:48875315-48875334 Msa0815330:intron 50.0%
! TCTGAGTTCTAGCGGTTGTG+GGG + chr5_3:48875316-48875335 Msa0815330:intron 50.0%
! TGTGTTTGGTGAGTGCAGAG+AGG + chr5_3:48875540-48875559 Msa0815330:intron 50.0%
! GTGTTTGGTGAGTGCAGAGA+GGG + chr5_3:48875541-48875560 Msa0815330:intron 50.0%
TACTTCGTAGGCTATGCCAC+AGG + chr5_3:48875681-48875700 Msa0815330:CDS 50.0%
GAACCTTGGCCATGTACTAG+TGG + chr5_3:48876282-48876301 Msa0815330:three_prime_UTR 50.0%
TGACCACTAGTACATGGCCA+AGG - chr5_3:48876288-48876307 None:intergenic 50.0%
!! TGCCCTGTTTGGTTTGGCTG+TGG - chr5_3:48873332-48873351 None:intergenic 55.0%
TGACCAACCTCCTAGCTAGG+AGG + chr5_3:48873791-48873810 Msa0815330:intron 55.0%
CAACCTCCTAGCTAGGAGGT+TGG - chr5_3:48873795-48873814 None:intergenic 55.0%
CAACCTCCTAGCTAGGAGGT+TGG + chr5_3:48873795-48873814 Msa0815330:intron 55.0%
TTGCCAACCTCCTAGCTAGG+AGG - chr5_3:48873801-48873820 None:intergenic 55.0%
CACTTGCCAACCTCCTAGCT+AGG - chr5_3:48873804-48873823 None:intergenic 55.0%
AGCTAGGAGGTTGGCAAGTG+TGG + chr5_3:48873804-48873823 Msa0815330:intron 55.0%
AACGTTGGTCGATGGGGTGA+TGG + chr5_3:48873873-48873892 Msa0815330:intron 55.0%
!!! AGGCTTTTGACTCGGTGGGT+TGG + chr5_3:48873961-48873980 Msa0815330:intron 55.0%
!!! CTTTTGACTCGGTGGGTTGG+AGG + chr5_3:48873964-48873983 Msa0815330:intron 55.0%
!!! CTCGGTGGGTTGGAGGTTTT+TGG + chr5_3:48873971-48873990 Msa0815330:intron 55.0%
TGCGGTTGAGTGTGTGTGTG+TGG + chr5_3:48874020-48874039 Msa0815330:intron 55.0%
GCGGTTGAGTGTGTGTGTGT+GGG + chr5_3:48874021-48874040 Msa0815330:intron 55.0%
CGGTTGAGTGTGTGTGTGTG+GGG + chr5_3:48874022-48874041 Msa0815330:intron 55.0%
TTGAGTGTGTGTGTGTGGGG+AGG + chr5_3:48874025-48874044 Msa0815330:intron 55.0%
TGAGTGTGTGTGTGTGGGGA+GGG + chr5_3:48874026-48874045 Msa0815330:intron 55.0%
ATGGTTCAAATGGGGGAGGG+TGG + chr5_3:48874395-48874414 Msa0815330:intron 55.0%
TGGTTCAAATGGGGGAGGGT+GGG + chr5_3:48874396-48874415 Msa0815330:intron 55.0%
!! ATTGGGAGTGTTGGGGAGGA+GGG + chr5_3:48874858-48874877 Msa0815330:intron 55.0%
GATTGCGCGCTAAGGGAGTT+TGG + chr5_3:48875083-48875102 Msa0815330:intron 55.0%
AACACTGAACCGAAGGCAGC+AGG - chr5_3:48875129-48875148 None:intergenic 55.0%
AGTGTTGTCTGCTGTGCTGC+TGG + chr5_3:48875143-48875162 Msa0815330:intron 55.0%
! GGTCTGGTTTGAGTTTCGGG+GGG + chr5_3:48875196-48875215 Msa0815330:intron 55.0%
! GCTCTGAGTTCTAGCGGTTG+TGG + chr5_3:48875314-48875333 Msa0815330:intron 55.0%
! CTGAGTTCTAGCGGTTGTGG+GGG + chr5_3:48875317-48875336 Msa0815330:intron 55.0%
!! GAGAGGGCACCAAAACTCTC+TGG + chr5_3:48875557-48875576 Msa0815330:intron 55.0%
CCGAGTTTCAGACGGTTCTC+GGG - chr5_3:48875711-48875730 None:intergenic 55.0%
! CCCGAGAACCGTCTGAAACT+CGG + chr5_3:48875708-48875727 Msa0815330:CDS 55.0%
CCCGAGTTTCAGACGGTTCT+CGG - chr5_3:48875712-48875731 None:intergenic 55.0%
! CCGAGAACCGTCTGAAACTC+GGG + chr5_3:48875709-48875728 Msa0815330:CDS 55.0%
ACCATAAGCCCCAGTAGTGC+CGG - chr5_3:48875836-48875855 None:intergenic 55.0%
TGGGGACAGCCTCATTGCCA+TGG - chr5_3:48873666-48873685 None:intergenic 60.0%
!! GGCTGTCCCCATAGCCTTGT+TGG + chr5_3:48873675-48873694 Msa0815330:intron 60.0%
GAGTGTGTGTGTGTGGGGAG+GGG + chr5_3:48874027-48874046 Msa0815330:intron 60.0%
AGTGTGTGTGTGTGGGGAGG+GGG + chr5_3:48874028-48874047 Msa0815330:intron 60.0%
!! TGGGTTTTTGGAGGGTGGCG+TGG + chr5_3:48874295-48874314 Msa0815330:intron 60.0%
!! TTTTGGAGGGTGGCGTGGAG+AGG + chr5_3:48874300-48874319 Msa0815330:intron 60.0%
GGTTCAAATGGGGGAGGGTG+GGG + chr5_3:48874397-48874416 Msa0815330:intron 60.0%
GTTCAAATGGGGGAGGGTGG+GGG + chr5_3:48874398-48874417 Msa0815330:intron 60.0%
! GAGGGTGGGGGTTTTCTTGG+AGG + chr5_3:48874410-48874429 Msa0815330:intron 60.0%
!! GTCCATTGGGAGTGTTGGGG+AGG + chr5_3:48874854-48874873 Msa0815330:intron 60.0%
CTCCTCCCCAACACTCCCAA+TGG - chr5_3:48874859-48874878 None:intergenic 60.0%
!! CATTGGGAGTGTTGGGGAGG+AGG + chr5_3:48874857-48874876 Msa0815330:intron 60.0%
!! CGCGGCGTTGGATTTTGGGA+AGG + chr5_3:48875012-48875031 Msa0815330:intron 60.0%
ACCCAAGGGATTGCGCGCTA+AGG + chr5_3:48875075-48875094 Msa0815330:intron 60.0%
CCCTTAGCGCGCAATCCCTT+GGG - chr5_3:48875079-48875098 None:intergenic 60.0%
CCCAAGGGATTGCGCGCTAA+GGG + chr5_3:48875076-48875095 Msa0815330:intron 60.0%
TCCCTTAGCGCGCAATCCCT+TGG - chr5_3:48875080-48875099 None:intergenic 60.0%
! GGTTTGAGTTTCGGGGGGAC+TGG + chr5_3:48875201-48875220 Msa0815330:intron 60.0%
TCAGAGCTGCCCCGAAGGAA+AGG - chr5_3:48875301-48875320 None:intergenic 60.0%
AGAACTCAGAGCTGCCCCGA+AGG - chr5_3:48875306-48875325 None:intergenic 60.0%
!! GGGGCAGCTCTGAGTTCTAG+CGG + chr5_3:48875308-48875327 Msa0815330:intron 60.0%
! AGTTCTAGCGGTTGTGGGGG+TGG + chr5_3:48875320-48875339 Msa0815330:intron 60.0%
GTTCTAGCGGTTGTGGGGGT+GGG + chr5_3:48875321-48875340 Msa0815330:intron 60.0%
!! CGGTTGTGGGGGTGGGTTTT+TGG + chr5_3:48875328-48875347 Msa0815330:intron 60.0%
ACGGTTCTCGGGTTTGCCTG+TGG - chr5_3:48875700-48875719 None:intergenic 60.0%
GTGTGTGTGTGTGGGGAGGG+GGG + chr5_3:48874029-48874048 Msa0815330:intron 65.0%
GAGGGTGGCGTGGAGAGGAA+TGG + chr5_3:48874305-48874324 Msa0815330:intron 65.0%
! GGGGAGGGTGGGGGTTTTCT+TGG + chr5_3:48874407-48874426 Msa0815330:intron 65.0%
GAGGTTGGGCCTGCTGCCTT+CGG + chr5_3:48875117-48875136 Msa0815330:intron 65.0%
TTGCGCACAGGCTGTGCTGC+TGG + chr5_3:48875175-48875194 Msa0815330:intron 65.0%
! CACAGGCTGTGCTGCTGGTC+TGG + chr5_3:48875180-48875199 Msa0815330:intron 65.0%
GCCGGCACTACTGGGGCTTA+TGG + chr5_3:48875832-48875851 Msa0815330:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 48872890 48876612 48872890 ID=Msa0815330;Name=Msa0815330
chr5_3 mRNA 48872890 48876612 48872890 ID=Msa0815330-mRNA-1;Parent=Msa0815330;Name=Msa0815330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=109|1|1|1|1|1|4|705|150
chr5_3 exon 48872890 48873114 48872890 ID=Msa0815330-mRNA-1:exon:14650;Parent=Msa0815330-mRNA-1
chr5_3 exon 48873207 48873282 48873207 ID=Msa0815330-mRNA-1:exon:14651;Parent=Msa0815330-mRNA-1
chr5_3 exon 48875558 48875730 48875558 ID=Msa0815330-mRNA-1:exon:14652;Parent=Msa0815330-mRNA-1
chr5_3 exon 48875820 48876612 48875820 ID=Msa0815330-mRNA-1:exon:14653;Parent=Msa0815330-mRNA-1
chr5_3 five_prime_UTR 48872890 48872998 48872890 ID=Msa0815330-mRNA-1:five_prime_utr;Parent=Msa0815330-mRNA-1
chr5_3 CDS 48872999 48873114 48872999 ID=Msa0815330-mRNA-1:cds;Parent=Msa0815330-mRNA-1
chr5_3 CDS 48873207 48873282 48873207 ID=Msa0815330-mRNA-1:cds;Parent=Msa0815330-mRNA-1
chr5_3 CDS 48875558 48875730 48875558 ID=Msa0815330-mRNA-1:cds;Parent=Msa0815330-mRNA-1
chr5_3 CDS 48875820 48875907 48875820 ID=Msa0815330-mRNA-1:cds;Parent=Msa0815330-mRNA-1
chr5_3 three_prime_UTR 48875908 48876612 48875908 ID=Msa0815330-mRNA-1:three_prime_utr;Parent=Msa0815330-mRNA-1
Gene Sequence

>Msa0815330

ATGGCGACACTGGTAGAATTGTTACCAAAGGAATATGGCTTTGTGGCAATCGTTCTCGTTCTCTACACCTTCCTCAATTTCTTCATGACCTTTCAAGTTGGCAAAGCTCGCAAGAAGTACAAAGTTTTTTATCCAACCCTTTATGCTTCTGAATCTGAAAACAAAGATGCCAAGCTCTTCAATTGCGTTCAGAGAGGGCACCAAAACTCTCTGGAAACGATGCCCATTTTCTTCATGTTGATGATTTTGGGAGGGCTGAAGCATCCTATCATTTGTGCTGTCCTTGGAGTACTTTACACTGTTGCTAGATACTTCTACTTCGTAGGCTATGCCACAGGCAAACCCGAGAACCGTCTGAAACTCGGGGGATTTTTTATGCCGGCACTACTGGGGCTTATGGTGTCTACACTTTCATTTGGATGGAGTCTTGTCAATCAGCCTGCAAACCAGTGA
Protein sequence

>Msa0815330

MATLVELLPKEYGFVAIVLVLYTFLNFFMTFQVGKARKKYKVFYPTLYASESENKDAKLFNCVQRGHQNSLETMPIFFMLMILGGLKHPIICAVLGVLYTVARYFYFVGYATGKPENRLKLGGFFMPALLGLMVSTLSFGWSLVNQPANQ*