AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0777990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777990 MtrunA17_Chr5g0433481 94.000 150 9 0 1 150 1 150 8.03e-103 290
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777990 AT1G65820.1 65.972 144 49 0 1 144 1 144 4.70e-67 200
Msa0777990 AT1G65820.2 59.375 160 49 1 1 144 1 160 9.71e-63 190
Msa0777990 AT1G65820.3 69.672 122 37 0 1 122 1 122 7.34e-60 184

Find 73 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTCATGTTGATGATTT+TGG 0.072271 5_2:+57778048 Msa0777990:CDS
TTGGCCAAATATGTTGTTTC+TGG 0.148618 5_2:-57779048 None:intergenic
AATCATCAACATGAAGAAAA+TGG 0.174934 5_2:-57778044 None:intergenic
ATACGGTTTGGATACGTTTA+TGG 0.180137 5_2:-57778909 None:intergenic
TTACCCAGAAACAACATATT+TGG 0.195988 5_2:+57779044 Msa0777990:three_prime_UTR
CGCAGCATATATCCCAAGTA+TGG 0.286186 5_2:-57778938 None:intergenic
GCACAAACCAAACTTGGATT+TGG 0.295085 5_2:-57779011 None:intergenic
CCCGAGTTTCAGACGGTTCT+CGG 0.306867 5_2:-57778164 None:intergenic
AGTTCAAATCACTGGTTTGC+AGG 0.309105 5_2:-57778348 None:intergenic
CATTATTCATTTGCAGTCCT+TGG 0.316092 5_2:-57778424 None:intergenic
AGCCTTTGTATGTTACAATA+AGG 0.341454 5_2:+57778482 Msa0777990:three_prime_UTR
TTTCAGATTCAGAAGCATAA+AGG 0.349675 5_2:-57775678 None:intergenic
ACCGTATTTGCACCCATACT+TGG 0.354211 5_2:+57778925 Msa0777990:three_prime_UTR
CAGATGTCTCATTGCGGACT+TGG 0.362574 5_2:+57778683 Msa0777990:three_prime_UTR
GCATCGTTTCCAGAGAGTTT+TGG 0.363401 5_2:-57778021 None:intergenic
ATGGTGTCTACACTTTCATT+TGG 0.365189 5_2:+57778306 Msa0777990:CDS
CCTATCATTTGTGCTGTCCT+TGG 0.365216 5_2:+57778085 Msa0777990:CDS
GAATTGTTACCAAAGGAATA+TGG 0.366678 5_2:+57775467 Msa0777990:CDS
GCCGGCACTACTGGGGCTTA+TGG 0.381706 5_2:+57778287 Msa0777990:CDS
CCCAAGTATGGGTGCAAATA+CGG 0.388717 5_2:-57778926 None:intergenic
CACAAACCAAACTTGGATTT+GGG 0.393070 5_2:-57779010 None:intergenic
CAATCTCTTCAATTGCGTTC+AGG 0.393605 5_2:+57775711 Msa0777990:CDS
CAAAATGCACAAACCAAACT+TGG 0.399719 5_2:-57779017 None:intergenic
TGGCCAAATATGTTGTTTCT+GGG 0.400903 5_2:-57779047 None:intergenic
GTATCTCCCAAATCCAAGTT+TGG 0.402590 5_2:+57779004 Msa0777990:three_prime_UTR
TTCAGATTCAGAAGCATAAA+GGG 0.404409 5_2:-57775677 None:intergenic
GCCACAAAGCCATATTCCTT+TGG 0.406868 5_2:-57775476 None:intergenic
AAGGCTAAAACTCCAAAATC+TGG 0.416056 5_2:-57778826 None:intergenic
TTGGCCTTGTTTAACAGTAA+AGG 0.430630 5_2:+57778855 Msa0777990:three_prime_UTR
ATCATCAACATGAAGAAAAT+GGG 0.438900 5_2:-57778043 None:intergenic
CCAAGGACAGCACAAATGAT+AGG 0.451302 5_2:-57778085 None:intergenic
GAGATAAAAGTTCAAATCAC+TGG 0.454575 5_2:-57778356 None:intergenic
AACTGTAATATCTAAAATAC+AGG 0.460383 5_2:-57778980 None:intergenic
CCGAGAACCGTCTGAAACTC+GGG 0.463273 5_2:+57778164 Msa0777990:CDS
GAGAGGGCACCAAAACTCTC+TGG 0.465785 5_2:+57778012 Msa0777990:intron
CCGAGTTTCAGACGGTTCTC+GGG 0.472239 5_2:-57778163 None:intergenic
TGTCTACACTTTCATTTGGA+TGG 0.477493 5_2:+57778310 Msa0777990:CDS
GTATGGGTGCAAATACGGTT+TGG 0.478873 5_2:-57778921 None:intergenic
CTGAACGCAATTGAAGAGAT+TGG 0.483897 5_2:-57775710 None:intergenic
CCCGAGAACCGTCTGAAACT+CGG 0.487007 5_2:+57778163 Msa0777990:CDS
GCGAGCTTTGCCAACTTGAA+AGG 0.489911 5_2:-57775540 None:intergenic
ACCAAAGGAATATGGCTTTG+TGG 0.496319 5_2:+57775475 Msa0777990:CDS
ACCATAAGCCCCAGTAGTGC+CGG 0.497715 5_2:-57778288 None:intergenic
AGATTCAATGAGTAATGTAC+TGG 0.506970 5_2:-57775385 None:intergenic
GAAAGGTCATGAAGAAATTG+AGG 0.509106 5_2:-57775523 None:intergenic
GATTCAGAAGCATAAAGGGT+TGG 0.509643 5_2:-57775673 None:intergenic
TGCTAAAAGTATTTAAGTTG+TGG 0.514267 5_2:+57778712 Msa0777990:three_prime_UTR
TTACTTTGACCACTAGTACA+TGG 0.520685 5_2:-57778746 None:intergenic
TTCTTCATGACCTTTCAAGT+TGG 0.523551 5_2:+57775530 Msa0777990:CDS
ACCTCATCATCAAGAGGCTA+TGG 0.525062 5_2:-57778384 None:intergenic
TTTAAGTTGTGGTAGAACCT+TGG 0.531795 5_2:+57778723 Msa0777990:three_prime_UTR
CCGTATTTGCACCCATACTT+GGG 0.532717 5_2:+57778926 Msa0777990:three_prime_UTR
TAAACAAGGCCAAATAAGAA+AGG 0.541354 5_2:-57778845 None:intergenic
AATTGACGACTACACTCTGC+AGG 0.557869 5_2:-57778630 None:intergenic
GAGTGTAGTCGTCAATTCAC+AGG 0.564595 5_2:+57778636 Msa0777990:three_prime_UTR
TTAATAACCTCATCATCAAG+AGG 0.568571 5_2:-57778390 None:intergenic
ACCATAGCCTCTTGATGATG+AGG 0.570853 5_2:+57778383 Msa0777990:three_prime_UTR
TGAGTAATGTACTGGTTTCG+TGG 0.570970 5_2:-57775377 None:intergenic
ACGGTTCTCGGGTTTGCCTG+TGG 0.592329 5_2:-57778152 None:intergenic
GGTCATGAAGAAATTGAGGA+AGG 0.595983 5_2:-57775519 None:intergenic
GCTAGATACTTCTACTTCGT+AGG 0.595990 5_2:+57778124 Msa0777990:CDS
GCAGCATATATCCCAAGTAT+GGG 0.604149 5_2:-57778937 None:intergenic
GAACCTTGGCCATGTACTAG+TGG 0.609927 5_2:+57778737 Msa0777990:three_prime_UTR
ACATGTTTAGAGTTTCAACA+TGG 0.610280 5_2:+57778505 Msa0777990:three_prime_UTR
GTCCTTATTGTAACATACAA+AGG 0.616409 5_2:-57778484 None:intergenic
TACTTCGTAGGCTATGCCAC+AGG 0.617511 5_2:+57778136 Msa0777990:CDS
TTAATCACCCGAGTTTCAGA+CGG 0.625019 5_2:-57778171 None:intergenic
TGACCACTAGTACATGGCCA+AGG 0.640168 5_2:-57778740 None:intergenic
CAACAGTGTAAAGTACTCCA+AGG 0.641397 5_2:-57778102 None:intergenic
ACTGGTAGAATTGTTACCAA+AGG 0.651792 5_2:+57775460 Msa0777990:CDS
CATGTTTAGAGTTTCAACAT+GGG 0.654346 5_2:+57778506 Msa0777990:three_prime_UTR
TATTAAATAATATAAGACCA+AGG 0.701183 5_2:+57778407 Msa0777990:three_prime_UTR
CTAAATCAGATGTCTCATTG+CGG 0.727194 5_2:+57778677 Msa0777990:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATATATATGCTAAA+GGG + chr5_2:57776065-57776084 Msa0777990:intron 10.0%
!!! ATTTTTAATGATATGATTAA+AGG + chr5_2:57777407-57777426 Msa0777990:intron 10.0%
!!! TTTTTAATGATATGATTAAA+GGG + chr5_2:57777408-57777427 Msa0777990:intron 10.0%
!! AAAGTAAAATAAATCATGTT+CGG - chr5_2:57775820-57775839 None:intergenic 15.0%
!! ATATTTGTAACATATCAATA+TGG - chr5_2:57776051-57776070 None:intergenic 15.0%
!! CAAATATATATATATGCTAA+AGG + chr5_2:57776064-57776083 Msa0777990:intron 15.0%
!! CAATAAATTGTTAAAAAGAT+AGG - chr5_2:57776906-57776925 None:intergenic 15.0%
!!! CTATCTTTTTAACAATTTAT+TGG + chr5_2:57776904-57776923 Msa0777990:intron 15.0%
!!! TTTTAATGATATGATTAAAG+GGG + chr5_2:57777409-57777428 Msa0777990:intron 15.0%
!! TATTAAATAATATAAGACCA+AGG + chr5_2:57778407-57778426 Msa0777990:three_prime_UTR 15.0%
!! CATCTATATAAACAAATTGA+AGG - chr5_2:57775589-57775608 None:intergenic 20.0%
!!! ATTTTACAAAATAAACTGAC+TGG + chr5_2:57775863-57775882 Msa0777990:intron 20.0%
!! ATTTAGTATTAACAATTCCA+TGG + chr5_2:57776094-57776113 Msa0777990:intron 20.0%
!! AATTATTTCGACTAATCAAT+TGG + chr5_2:57776282-57776301 Msa0777990:intron 20.0%
!! TAAAATCAAACAATCTTTAC+TGG - chr5_2:57776373-57776392 None:intergenic 20.0%
!!! TTTGTTATAGAGAAAATTCT+TGG - chr5_2:57776799-57776818 None:intergenic 20.0%
!! TAACAATTTATTGGAAGATT+TGG + chr5_2:57776913-57776932 Msa0777990:intron 20.0%
!! TGAATAAGAAAATCCAAAAA+AGG + chr5_2:57777326-57777345 Msa0777990:intron 20.0%
!!! TTATTTTTTTGAATCAGCAA+AGG - chr5_2:57777910-57777929 None:intergenic 20.0%
!! TTGTTATAATATTCTGTGTT+TGG + chr5_2:57777981-57778000 Msa0777990:intron 20.0%
!! AATTACAGATATAACACTTA+TGG - chr5_2:57778210-57778229 None:intergenic 20.0%
!! AGTTACATATTAATCAATCA+TGG - chr5_2:57778237-57778256 None:intergenic 20.0%
!! AAATATAAAACCAAAAACAG+GGG - chr5_2:57778805-57778824 None:intergenic 20.0%
!! CAAATATAAAACCAAAAACA+GGG - chr5_2:57778806-57778825 None:intergenic 20.0%
!!! AACTGTAATATCTAAAATAC+AGG - chr5_2:57778983-57779002 None:intergenic 20.0%
!!! GATTTGTTTCTTGTTTTTTC+TGG - chr5_2:57775420-57775439 None:intergenic 25.0%
!!! GTTTTGTGATTTTGTTTACA+AGG + chr5_2:57775612-57775631 Msa0777990:intron 25.0%
! AAGTTACGAATCTTATTGTT+TGG - chr5_2:57775793-57775812 None:intergenic 25.0%
! GGATAAATGTTGAATAATCT+AGG + chr5_2:57775884-57775903 Msa0777990:intron 25.0%
! AAATGTTGAATAATCTAGGA+TGG + chr5_2:57775888-57775907 Msa0777990:intron 25.0%
!!! TTTAAAAGTCGATTTTGAGA+AGG + chr5_2:57776389-57776408 Msa0777990:intron 25.0%
!! AATTTATTGGAAGATTTGGT+AGG + chr5_2:57776917-57776936 Msa0777990:intron 25.0%
! AAAATCTATGTATGTGAAGT+TGG + chr5_2:57777006-57777025 Msa0777990:intron 25.0%
!! AAAGTGTTATTACTTGTGTT+TGG + chr5_2:57777152-57777171 Msa0777990:intron 25.0%
! CATTCGTAATATAAACACAA+CGG - chr5_2:57777488-57777507 None:intergenic 25.0%
! GATAGACAAAAAAAGAATCT+AGG - chr5_2:57777950-57777969 None:intergenic 25.0%
! ATCATCAACATGAAGAAAAT+GGG - chr5_2:57778046-57778065 None:intergenic 25.0%
! AATCATCAACATGAAGAAAA+TGG - chr5_2:57778047-57778066 None:intergenic 25.0%
!!! TTTCTTCATGTTGATGATTT+TGG + chr5_2:57778048-57778067 Msa0777990:CDS 25.0%
!!! TTCTTCATGTTGATGATTTT+GGG + chr5_2:57778049-57778068 Msa0777990:CDS 25.0%
! AACTGAATTTATATGCTAAC+AGG + chr5_2:57778253-57778272 Msa0777990:intron 25.0%
! ACTGAATTTATATGCTAACA+GGG + chr5_2:57778254-57778273 Msa0777990:intron 25.0%
!!! TGCTAAAAGTATTTAAGTTG+TGG + chr5_2:57778712-57778731 Msa0777990:three_prime_UTR 25.0%
! GCAAATATAAAACCAAAAAC+AGG - chr5_2:57778807-57778826 None:intergenic 25.0%
!! GTTTTATATTTGCCAGATTT+TGG + chr5_2:57778814-57778833 Msa0777990:three_prime_UTR 25.0%
!! TTTTCCTTTACTGTTAAACA+AGG - chr5_2:57778862-57778881 None:intergenic 25.0%
AGATTCAATGAGTAATGTAC+TGG - chr5_2:57775388-57775407 None:intergenic 30.0%
ACAAATCCATCATCCAAAAA+TGG + chr5_2:57775433-57775452 Msa0777990:exon 30.0%
GAATTGTTACCAAAGGAATA+TGG + chr5_2:57775467-57775486 Msa0777990:CDS 30.0%
TAAAAAACTTTGTACCTGTG+AGG - chr5_2:57775652-57775671 None:intergenic 30.0%
! TTCAGATTCAGAAGCATAAA+GGG - chr5_2:57775680-57775699 None:intergenic 30.0%
! TTTCAGATTCAGAAGCATAA+AGG - chr5_2:57775681-57775700 None:intergenic 30.0%
ACGAATCTTATTGTTTGGTT+TGG - chr5_2:57775788-57775807 None:intergenic 30.0%
!! GAATAATCTAGGATGGATTT+TGG + chr5_2:57775895-57775914 Msa0777990:intron 30.0%
ATACTACCTAACAAGAAAAG+AGG - chr5_2:57776208-57776227 None:intergenic 30.0%
!! AATCAATTGGCCTTTCTAAA+AGG + chr5_2:57776295-57776314 Msa0777990:intron 30.0%
!! CAACGTTATACCTTTTAGAA+AGG - chr5_2:57776308-57776327 None:intergenic 30.0%
! CTTTCTAAAAGGTATAACGT+TGG + chr5_2:57776306-57776325 Msa0777990:intron 30.0%
!! GAGGTTTTTGGATATATCAA+TGG + chr5_2:57776431-57776450 Msa0777990:intron 30.0%
GGAAATTAATTTCTTCCGTT+GGG - chr5_2:57776529-57776548 None:intergenic 30.0%
TGGAAATTAATTTCTTCCGT+TGG - chr5_2:57776530-57776549 None:intergenic 30.0%
ACGGAAGAAATTAATTTCCA+AGG + chr5_2:57776530-57776549 Msa0777990:intron 30.0%
! TCAAAATTGGTTTAACACAG+AGG + chr5_2:57776690-57776709 Msa0777990:intron 30.0%
CAAAAGAAATGTGATACCAA+TGG + chr5_2:57777129-57777148 Msa0777990:intron 30.0%
CAAGTAATAACACTTTCCAT+TGG - chr5_2:57777148-57777167 None:intergenic 30.0%
ACTATGTAAAAGAAGGTGAT+TGG - chr5_2:57777200-57777219 None:intergenic 30.0%
CCAAAGAACTATGTAAAAGA+AGG - chr5_2:57777207-57777226 None:intergenic 30.0%
! CCTTCTTTTACATAGTTCTT+TGG + chr5_2:57777204-57777223 Msa0777990:intron 30.0%
! TTTTACATAGTTCTTTGGCA+AGG + chr5_2:57777209-57777228 Msa0777990:intron 30.0%
GAAAATCCAAAAAAGGTTTG+AGG + chr5_2:57777333-57777352 Msa0777990:intron 30.0%
!!! AATCAACCTCAAACCTTTTT+TGG - chr5_2:57777342-57777361 None:intergenic 30.0%
! AAAAAGGTTTGAGGTTGATT+TGG + chr5_2:57777342-57777361 Msa0777990:intron 30.0%
TAATGATATGATTAAAGGGG+TGG + chr5_2:57777412-57777431 Msa0777990:intron 30.0%
CGTTGTGTTTATATTACGAA+TGG + chr5_2:57777486-57777505 Msa0777990:intron 30.0%
! GTTTATATTACGAATGGACT+TGG + chr5_2:57777492-57777511 Msa0777990:intron 30.0%
AAAGGAAGAAACAAGTACAA+AGG - chr5_2:57777843-57777862 None:intergenic 30.0%
! CTTCCTTTATGCAAACTTTT+TGG + chr5_2:57777855-57777874 Msa0777990:intron 30.0%
CTGAATTTATATGCTAACAG+GGG + chr5_2:57778255-57778274 Msa0777990:intron 30.0%
GAGATAAAAGTTCAAATCAC+TGG - chr5_2:57778359-57778378 None:intergenic 30.0%
TTAATAACCTCATCATCAAG+AGG - chr5_2:57778393-57778412 None:intergenic 30.0%
AGCCTTTGTATGTTACAATA+AGG + chr5_2:57778482-57778501 Msa0777990:three_prime_UTR 30.0%
GTCCTTATTGTAACATACAA+AGG - chr5_2:57778487-57778506 None:intergenic 30.0%
! ACATGTTTAGAGTTTCAACA+TGG + chr5_2:57778505-57778524 Msa0777990:three_prime_UTR 30.0%
! CATGTTTAGAGTTTCAACAT+GGG + chr5_2:57778506-57778525 Msa0777990:three_prime_UTR 30.0%
!! GAGTTTTAGCCTTTCTTATT+TGG + chr5_2:57778836-57778855 Msa0777990:three_prime_UTR 30.0%
TAAACAAGGCCAAATAAGAA+AGG - chr5_2:57778848-57778867 None:intergenic 30.0%
TTACCCAGAAACAACATATT+TGG + chr5_2:57779044-57779063 Msa0777990:three_prime_UTR 30.0%
ACTGGTAGAATTGTTACCAA+AGG + chr5_2:57775460-57775479 Msa0777990:CDS 35.0%
GAAAGGTCATGAAGAAATTG+AGG - chr5_2:57775526-57775545 None:intergenic 35.0%
! TTCTTCATGACCTTTCAAGT+TGG + chr5_2:57775530-57775549 Msa0777990:CDS 35.0%
! TGTTTGTTGAAATTCCTCAC+AGG + chr5_2:57775635-57775654 Msa0777990:intron 35.0%
TGATTCCTATGTTCCTTGTT+GGG + chr5_2:57775996-57776015 Msa0777990:intron 35.0%
TTAACAATTCCATGGCAATG+AGG + chr5_2:57776102-57776121 Msa0777990:intron 35.0%
CGATAATCTTTCAACTCCAA+AGG - chr5_2:57776184-57776203 None:intergenic 35.0%
! TATCGTCCTCTTTTCTTGTT+AGG + chr5_2:57776199-57776218 Msa0777990:intron 35.0%
!! TTTTGAGAAGGCTTTTGACT+CGG + chr5_2:57776401-57776420 Msa0777990:intron 35.0%
GATATATCAATGGTGAGAGT+TGG + chr5_2:57776441-57776460 Msa0777990:intron 35.0%
ATGTCGATACTTGTGAATGA+TGG + chr5_2:57776503-57776522 Msa0777990:intron 35.0%
! AAGGATTTTGTGAACCTAGA+GGG + chr5_2:57776658-57776677 Msa0777990:intron 35.0%
AAATAACCAAGACAGAGATG+TGG + chr5_2:57776816-57776835 Msa0777990:intron 35.0%
ATGTGGATAGATGGTTCAAA+TGG + chr5_2:57776833-57776852 Msa0777990:intron 35.0%
TGTGGATAGATGGTTCAAAT+GGG + chr5_2:57776834-57776853 Msa0777990:intron 35.0%
! AAGATTTGGTAGGCTATACA+AGG + chr5_2:57776927-57776946 Msa0777990:intron 35.0%
! CAAGGCATCAAGAATATGAT+AGG + chr5_2:57776945-57776964 Msa0777990:intron 35.0%
! AAGAATATGATAGGTGGACT+TGG + chr5_2:57776954-57776973 Msa0777990:intron 35.0%
TCTATGTATGTGAAGTTGGA+AGG + chr5_2:57777010-57777029 Msa0777990:intron 35.0%
AGAGGATGTTTCGTCAAATT+TGG + chr5_2:57777071-57777090 Msa0777990:intron 35.0%
TTCGTCAAATTTGGAAGTCT+AGG + chr5_2:57777080-57777099 Msa0777990:intron 35.0%
TCGTCAAATTTGGAAGTCTA+GGG + chr5_2:57777081-57777100 Msa0777990:intron 35.0%
!! TACTTGTGTTTGGTGTATGA+CGG + chr5_2:57777162-57777181 Msa0777990:intron 35.0%
GTTCTTTGGCAAGGAATATT+TGG + chr5_2:57777218-57777237 Msa0777990:intron 35.0%
TTTGGCAAGGAATATTTGGT+TGG + chr5_2:57777222-57777241 Msa0777990:intron 35.0%
ATATTTGGTTGGAACTGATG+TGG + chr5_2:57777233-57777252 Msa0777990:intron 35.0%
! TCCAAACTTGTTTGTCCATT+GGG + chr5_2:57777282-57777301 Msa0777990:intron 35.0%
!! ACAAAGGTGCTGTAAATATG+TGG - chr5_2:57777827-57777846 None:intergenic 35.0%
GCACCAAAAAGTTTGCATAA+AGG - chr5_2:57777861-57777880 None:intergenic 35.0%
!!! TTCATGTTGATGATTTTGGG+AGG + chr5_2:57778052-57778071 Msa0777990:CDS 35.0%
!!! TCATGTTGATGATTTTGGGA+GGG + chr5_2:57778053-57778072 Msa0777990:CDS 35.0%
!!! TAACAGGGGATTTTTTATGC+CGG + chr5_2:57778269-57778288 Msa0777990:intron 35.0%
ATGGTGTCTACACTTTCATT+TGG + chr5_2:57778306-57778325 Msa0777990:CDS 35.0%
TGTCTACACTTTCATTTGGA+TGG + chr5_2:57778310-57778329 Msa0777990:CDS 35.0%
CATTATTCATTTGCAGTCCT+TGG - chr5_2:57778427-57778446 None:intergenic 35.0%
CTAAATCAGATGTCTCATTG+CGG + chr5_2:57778677-57778696 Msa0777990:three_prime_UTR 35.0%
!! TTTAAGTTGTGGTAGAACCT+TGG + chr5_2:57778723-57778742 Msa0777990:three_prime_UTR 35.0%
TTACTTTGACCACTAGTACA+TGG - chr5_2:57778749-57778768 None:intergenic 35.0%
! TACACTATTTCCCCTGTTTT+TGG + chr5_2:57778792-57778811 Msa0777990:three_prime_UTR 35.0%
AAGGCTAAAACTCCAAAATC+TGG - chr5_2:57778829-57778848 None:intergenic 35.0%
!! TTGGCCTTGTTTAACAGTAA+AGG + chr5_2:57778855-57778874 Msa0777990:three_prime_UTR 35.0%
! ATACGGTTTGGATACGTTTA+TGG - chr5_2:57778912-57778931 None:intergenic 35.0%
CACAAACCAAACTTGGATTT+GGG - chr5_2:57779013-57779032 None:intergenic 35.0%
CAAAATGCACAAACCAAACT+TGG - chr5_2:57779020-57779039 None:intergenic 35.0%
!! TGAGTAATGTACTGGTTTCG+TGG - chr5_2:57775380-57775399 None:intergenic 40.0%
! ACCAAAGGAATATGGCTTTG+TGG + chr5_2:57775475-57775494 Msa0777990:CDS 40.0%
GGTCATGAAGAAATTGAGGA+AGG - chr5_2:57775522-57775541 None:intergenic 40.0%
! GATTCAGAAGCATAAAGGGT+TGG - chr5_2:57775676-57775695 None:intergenic 40.0%
CTGAACGCAATTGAAGAGAT+TGG - chr5_2:57775713-57775732 None:intergenic 40.0%
CAATCTCTTCAATTGCGTTC+AGG + chr5_2:57775711-57775730 Msa0777990:CDS 40.0%
!! GTGGAAGTGTCAATGAGTAA+TGG - chr5_2:57775763-57775782 None:intergenic 40.0%
!! CTTATTGTTTGGTTTGGCTG+TGG - chr5_2:57775782-57775801 None:intergenic 40.0%
GTGATTCCTATGTTCCTTGT+TGG + chr5_2:57775995-57776014 Msa0777990:intron 40.0%
GATTCCTATGTTCCTTGTTG+GGG + chr5_2:57775997-57776016 Msa0777990:intron 40.0%
TATACCCCAACAAGGAACAT+AGG - chr5_2:57776004-57776023 None:intergenic 40.0%
TCATCAACTATACCCCAACA+AGG - chr5_2:57776012-57776031 None:intergenic 40.0%
AAATACGCCAACAAGGCTAT+GGG - chr5_2:57776133-57776152 None:intergenic 40.0%
AAAATACGCCAACAAGGCTA+TGG - chr5_2:57776134-57776153 None:intergenic 40.0%
!!! AGCCTTGTTGGCGTATTTTT+TGG + chr5_2:57776135-57776154 Msa0777990:intron 40.0%
CACCAAAAAATACGCCAACA+AGG - chr5_2:57776140-57776159 None:intergenic 40.0%
!! CCAAAGGTGAGTTGACTTTT+GGG - chr5_2:57776168-57776187 None:intergenic 40.0%
!! TCCAAAGGTGAGTTGACTTT+TGG - chr5_2:57776169-57776188 None:intergenic 40.0%
! AAAGGTATAACGTTGGTCGA+TGG + chr5_2:57776313-57776332 Msa0777990:intron 40.0%
AAGGTATAACGTTGGTCGAT+GGG + chr5_2:57776314-57776333 Msa0777990:intron 40.0%
!! TTCCAAGGTTACCGATTTGT+TGG + chr5_2:57776545-57776564 Msa0777990:intron 40.0%
TTCCAACAAATCGGTAACCT+TGG - chr5_2:57776550-57776569 None:intergenic 40.0%
!! AAGGTTACCGATTTGTTGGA+AGG + chr5_2:57776549-57776568 Msa0777990:intron 40.0%
AACACCTCCTTCCAACAAAT+CGG - chr5_2:57776559-57776578 None:intergenic 40.0%
GGTGGAGAAATATGGTCAAA+AGG + chr5_2:57776579-57776598 Msa0777990:intron 40.0%
!! TCAAAAGGCTACCGATTTGT+TGG + chr5_2:57776594-57776613 Msa0777990:intron 40.0%
ACTACCACTCACCAACAAAT+CGG - chr5_2:57776608-57776627 None:intergenic 40.0%
CACCATCTAGAAGCAAAATG+CGG - chr5_2:57776637-57776656 None:intergenic 40.0%
!!! TTTTGCTTCTAGATGGTGGA+AGG + chr5_2:57776639-57776658 Msa0777990:intron 40.0%
! GAAGGATTTTGTGAACCTAG+AGG + chr5_2:57776657-57776676 Msa0777990:intron 40.0%
! ATTTTGTGAACCTAGAGGGA+TGG + chr5_2:57776662-57776681 Msa0777990:intron 40.0%
!! GTAGTGAGGAAAGTTGGTAA+CGG + chr5_2:57776712-57776731 Msa0777990:intron 40.0%
!! AGTTGGTAACGGTACAAGTA+CGG + chr5_2:57776723-57776742 Msa0777990:intron 40.0%
!! TACAAGTACGGGTTTTTGGA+GGG + chr5_2:57776735-57776754 Msa0777990:intron 40.0%
ATCTATCCACATCTCTGTCT+TGG - chr5_2:57776825-57776844 None:intergenic 40.0%
AAGACAGAGATGTGGATAGA+TGG + chr5_2:57776824-57776843 Msa0777990:intron 40.0%
GTGGATAGATGGTTCAAATG+GGG + chr5_2:57776835-57776854 Msa0777990:intron 40.0%
TGGATAGATGGTTCAAATGG+GGG + chr5_2:57776836-57776855 Msa0777990:intron 40.0%
GGCATCAAGAATATGATAGG+TGG + chr5_2:57776948-57776967 Msa0777990:intron 40.0%
ATCGTACGAAGGATGAAAAG+AGG + chr5_2:57777053-57777072 Msa0777990:intron 40.0%
CAATGGACAAACAAGTTTGG+AGG - chr5_2:57777283-57777302 None:intergenic 40.0%
! CTCCAAACTTGTTTGTCCAT+TGG + chr5_2:57777281-57777300 Msa0777990:intron 40.0%
TCCCAATGGACAAACAAGTT+TGG - chr5_2:57777286-57777305 None:intergenic 40.0%
TGATATGATTAAAGGGGTGG+AGG + chr5_2:57777415-57777434 Msa0777990:intron 40.0%
! AGGAGGTGAAAGTTATTTCG+CGG + chr5_2:57777435-57777454 Msa0777990:intron 40.0%
!!! GAGTTTGGTGTTTTGCTAAG+AGG + chr5_2:57777539-57777558 Msa0777990:intron 40.0%
!! TTGGTGTTTTGCTAAGAGGT+TGG + chr5_2:57777543-57777562 Msa0777990:intron 40.0%
! TGGTGTTTTGCTAAGAGGTT+GGG + chr5_2:57777544-57777563 Msa0777990:intron 40.0%
!!! AGTTTTTGGCTGGCAGTTTT+TGG + chr5_2:57777711-57777730 Msa0777990:intron 40.0%
! CAACAGTGTAAAGTACTCCA+AGG - chr5_2:57778105-57778124 None:intergenic 40.0%
GCTAGATACTTCTACTTCGT+AGG + chr5_2:57778124-57778143 Msa0777990:CDS 40.0%
TTAATCACCCGAGTTTCAGA+CGG - chr5_2:57778174-57778193 None:intergenic 40.0%
!!! ATTTTTTATGCCGGCACTAC+TGG + chr5_2:57778278-57778297 Msa0777990:CDS 40.0%
!!! TTTTTTATGCCGGCACTACT+GGG + chr5_2:57778279-57778298 Msa0777990:CDS 40.0%
!! AGTTCAAATCACTGGTTTGC+AGG - chr5_2:57778351-57778370 None:intergenic 40.0%
GCAGCATATATCCCAAGTAT+GGG - chr5_2:57778940-57778959 None:intergenic 40.0%
GTATCTCCCAAATCCAAGTT+TGG + chr5_2:57779004-57779023 Msa0777990:three_prime_UTR 40.0%
GCACAAACCAAACTTGGATT+TGG - chr5_2:57779014-57779033 None:intergenic 40.0%
!!! GTGTCGCCATTTTTGGATGA+TGG - chr5_2:57775442-57775461 None:intergenic 45.0%
TCATCCAAAAATGGCGACAC+TGG + chr5_2:57775442-57775461 Msa0777990:exon 45.0%
!! TCTACCAGTGTCGCCATTTT+TGG - chr5_2:57775449-57775468 None:intergenic 45.0%
GCCACAAAGCCATATTCCTT+TGG - chr5_2:57775479-57775498 None:intergenic 45.0%
AATACGCCAACAAGGCTATG+GGG - chr5_2:57776132-57776151 None:intergenic 45.0%
CCCAAAAGTCAACTCACCTT+TGG + chr5_2:57776165-57776184 Msa0777990:intron 45.0%
TATTGACCAACCTCGTAGCT+AGG + chr5_2:57776236-57776255 Msa0777990:intron 45.0%
AGGTATAACGTTGGTCGATG+GGG + chr5_2:57776315-57776334 Msa0777990:intron 45.0%
!! ATGGTGAGAGTTGGTATGTG+CGG + chr5_2:57776450-57776469 Msa0777990:intron 45.0%
ACTTGTGAATGATGGCCCAA+CGG + chr5_2:57776511-57776530 Msa0777990:intron 45.0%
!! GTTACCGATTTGTTGGAAGG+AGG + chr5_2:57776552-57776571 Msa0777990:intron 45.0%
!! GATTTGTTGGAAGGAGGTGT+TGG + chr5_2:57776558-57776577 Msa0777990:intron 45.0%
!! GAGGTGTTGGTGGAGAAATA+TGG + chr5_2:57776571-57776590 Msa0777990:intron 45.0%
! TGCCGCATTTTGCTTCTAGA+TGG + chr5_2:57776632-57776651 Msa0777990:intron 45.0%
! CGCATTTTGCTTCTAGATGG+TGG + chr5_2:57776635-57776654 Msa0777990:intron 45.0%
! AGGGATGGCTAGCTCAAAAT+TGG + chr5_2:57776677-57776696 Msa0777990:intron 45.0%
GGTTTAACACAGAGGTAGTG+AGG + chr5_2:57776698-57776717 Msa0777990:intron 45.0%
ACAGAGGTAGTGAGGAAAGT+TGG + chr5_2:57776706-57776725 Msa0777990:intron 45.0%
!! GTTGGTAACGGTACAAGTAC+GGG + chr5_2:57776724-57776743 Msa0777990:intron 45.0%
! ACGGTACAAGTACGGGTTTT+TGG + chr5_2:57776731-57776750 Msa0777990:intron 45.0%
!! GTACAAGTACGGGTTTTTGG+AGG + chr5_2:57776734-57776753 Msa0777990:intron 45.0%
!! GAGAGGAATGGTGTCATTCA+TGG + chr5_2:57776765-57776784 Msa0777990:intron 45.0%
ATAGATGGTTCAAATGGGGG+AGG + chr5_2:57776839-57776858 Msa0777990:intron 45.0%
TAGATGGTTCAAATGGGGGA+GGG + chr5_2:57776840-57776859 Msa0777990:intron 45.0%
GAGGCGAGATTTCTTCGTAT+GGG + chr5_2:57776877-57776896 Msa0777990:intron 45.0%
! TGATAGGTGGACTTGGAAGT+TGG + chr5_2:57776961-57776980 Msa0777990:intron 45.0%
ACTTGGAAGTTGGAGGAAGT+AGG + chr5_2:57776971-57776990 Msa0777990:intron 45.0%
CTTGGAAGTTGGAGGAAGTA+GGG + chr5_2:57776972-57776991 Msa0777990:intron 45.0%
! TGGAGGAAGTAGGGAGTTTT+TGG + chr5_2:57776981-57777000 Msa0777990:intron 45.0%
! GGAGGAAGTAGGGAGTTTTT+GGG + chr5_2:57776982-57777001 Msa0777990:intron 45.0%
TGTGAAGTTGGAAGGCTTGA+TGG + chr5_2:57777018-57777037 Msa0777990:intron 45.0%
! AGTTGGAAGGCTTGATGGTA+AGG + chr5_2:57777023-57777042 Msa0777990:intron 45.0%
! GTTGGAAGGCTTGATGGTAA+GGG + chr5_2:57777024-57777043 Msa0777990:intron 45.0%
!! GTTTGGTGTATGACGGAGAT+TGG + chr5_2:57777169-57777188 Msa0777990:intron 45.0%
TTTGGTTGGAACTGATGTGG+TGG + chr5_2:57777236-57777255 Msa0777990:intron 45.0%
! TGTTTGTCCATTGGGAGTGT+TGG + chr5_2:57777290-57777309 Msa0777990:intron 45.0%
!! GTTTGTCCATTGGGAGTGTT+GGG + chr5_2:57777291-57777310 Msa0777990:intron 45.0%
!! TTTGTCCATTGGGAGTGTTG+GGG + chr5_2:57777292-57777311 Msa0777990:intron 45.0%
!! TTTGAGGTTGATTTGGCACG+CGG + chr5_2:57777349-57777368 Msa0777990:intron 45.0%
! ACGCGGCGATTTGGAAAATT+TGG + chr5_2:57777366-57777385 Msa0777990:intron 45.0%
GAAAATTTGGCAAGCTCGCA+AGG + chr5_2:57777379-57777398 Msa0777990:intron 45.0%
TATGATTAAAGGGGTGGAGG+AGG + chr5_2:57777418-57777437 Msa0777990:intron 45.0%
! TGAAAGTTATTTCGCGGCGT+TGG + chr5_2:57777441-57777460 Msa0777990:intron 45.0%
!! TATTTCGCGGCGTTGGATTT+TGG + chr5_2:57777448-57777467 Msa0777990:intron 45.0%
!! ATTTCGCGGCGTTGGATTTT+GGG + chr5_2:57777449-57777468 Msa0777990:intron 45.0%
!!! TGGTTTTTTGGATTGCGCAC+AGG + chr5_2:57777604-57777623 Msa0777990:intron 45.0%
!! TGCTGGTCTGGTTTGAGTTT+TGG + chr5_2:57777633-57777652 Msa0777990:intron 45.0%
!! GCTGGTCTGGTTTGAGTTTT+GGG + chr5_2:57777634-57777653 Msa0777990:intron 45.0%
!! CTGGTCTGGTTTGAGTTTTG+GGG + chr5_2:57777635-57777654 Msa0777990:intron 45.0%
!! TGGTCTGGTTTGAGTTTTGG+GGG + chr5_2:57777636-57777655 Msa0777990:intron 45.0%
CAAAAACTGCCAGAAACACG+CGG - chr5_2:57777699-57777718 None:intergenic 45.0%
!!! TGTTTCTGGCAGTTTTTGGC+TGG + chr5_2:57777701-57777720 Msa0777990:intron 45.0%
!! TTTTTGGCCATTGGCTGTTG+CGG + chr5_2:57777727-57777746 Msa0777990:intron 45.0%
TGTTGCGGTTTCCTTTCCTT+CGG + chr5_2:57777742-57777761 Msa0777990:intron 45.0%
! GCATCGTTTCCAGAGAGTTT+TGG - chr5_2:57778024-57778043 None:intergenic 45.0%
CCAAGGACAGCACAAATGAT+AGG - chr5_2:57778088-57778107 None:intergenic 45.0%
CCTATCATTTGTGCTGTCCT+TGG + chr5_2:57778085-57778104 Msa0777990:CDS 45.0%
! TTTTTATGCCGGCACTACTG+GGG + chr5_2:57778280-57778299 Msa0777990:CDS 45.0%
!! ACCATAGCCTCTTGATGATG+AGG + chr5_2:57778383-57778402 Msa0777990:three_prime_UTR 45.0%
ACCTCATCATCAAGAGGCTA+TGG - chr5_2:57778387-57778406 None:intergenic 45.0%
AATTGACGACTACACTCTGC+AGG - chr5_2:57778633-57778652 None:intergenic 45.0%
GAGTGTAGTCGTCAATTCAC+AGG + chr5_2:57778636-57778655 Msa0777990:three_prime_UTR 45.0%
GTATGGGTGCAAATACGGTT+TGG - chr5_2:57778924-57778943 None:intergenic 45.0%
ACCGTATTTGCACCCATACT+TGG + chr5_2:57778925-57778944 Msa0777990:three_prime_UTR 45.0%
CCCAAGTATGGGTGCAAATA+CGG - chr5_2:57778929-57778948 None:intergenic 45.0%
CCGTATTTGCACCCATACTT+GGG + chr5_2:57778926-57778945 Msa0777990:three_prime_UTR 45.0%
CGCAGCATATATCCCAAGTA+TGG - chr5_2:57778941-57778960 None:intergenic 45.0%
!! ATATGTTAAAAATAATTAAT+TGG + chr5_2:57775957-57775976 Msa0777990:intron 5.0%
GCGAGCTTTGCCAACTTGAA+AGG - chr5_2:57775543-57775562 None:intergenic 50.0%
!!! TGAGAAGGCTTTTGACTCGG+TGG + chr5_2:57776404-57776423 Msa0777990:intron 50.0%
!!! GAGAAGGCTTTTGACTCGGT+GGG + chr5_2:57776405-57776424 Msa0777990:intron 50.0%
!! TTGTTGGAAGGAGGTGTTGG+TGG + chr5_2:57776561-57776580 Msa0777990:intron 50.0%
!! GCTACCGATTTGTTGGTGAG+TGG + chr5_2:57776601-57776620 Msa0777990:intron 50.0%
TTTGAGCTAGCCATCCCTCT+AGG - chr5_2:57776675-57776694 None:intergenic 50.0%
!! AAGTACGGGTTTTTGGAGGG+TGG + chr5_2:57776738-57776757 Msa0777990:intron 50.0%
GGAGGCGAGATTTCTTCGTA+TGG + chr5_2:57776876-57776895 Msa0777990:intron 50.0%
! TAGGTGGACTTGGAAGTTGG+AGG + chr5_2:57776964-57776983 Msa0777990:intron 50.0%
AAGGGAGGACAATCGTACGA+AGG + chr5_2:57777042-57777061 Msa0777990:intron 50.0%
AGCAGACAACACTGAACCGA+AGG - chr5_2:57777577-57777596 None:intergenic 50.0%
!!! CTGCTGTGCTGCTGGTTTTT+TGG + chr5_2:57777592-57777611 Msa0777990:intron 50.0%
!!! GGTCTGGTTTGAGTTTTGGG+GGG + chr5_2:57777637-57777656 Msa0777990:intron 50.0%
CATTACTGACCGCGTGTTTC+TGG + chr5_2:57777687-57777706 Msa0777990:intron 50.0%
!!! CGCGTGTTTCTGGCAGTTTT+TGG + chr5_2:57777697-57777716 Msa0777990:intron 50.0%
AAGGAAACCGCAACAGCCAA+TGG - chr5_2:57777737-57777756 None:intergenic 50.0%
GTTGCGGTTTCCTTTCCTTC+GGG + chr5_2:57777743-57777762 Msa0777990:intron 50.0%
TTGCGGTTTCCTTTCCTTCG+GGG + chr5_2:57777744-57777763 Msa0777990:intron 50.0%
! CTCTGAGTTCTAGCGGTTGT+GGG + chr5_2:57777770-57777789 Msa0777990:intron 50.0%
! TCTGAGTTCTAGCGGTTGTG+GGG + chr5_2:57777771-57777790 Msa0777990:intron 50.0%
! TGTGTTTGGTGAGTGCAGAG+AGG + chr5_2:57777995-57778014 Msa0777990:intron 50.0%
! GTGTTTGGTGAGTGCAGAGA+GGG + chr5_2:57777996-57778015 Msa0777990:intron 50.0%
TACTTCGTAGGCTATGCCAC+AGG + chr5_2:57778136-57778155 Msa0777990:CDS 50.0%
CAGATGTCTCATTGCGGACT+TGG + chr5_2:57778683-57778702 Msa0777990:three_prime_UTR 50.0%
GAACCTTGGCCATGTACTAG+TGG + chr5_2:57778737-57778756 Msa0777990:three_prime_UTR 50.0%
TGACCACTAGTACATGGCCA+AGG - chr5_2:57778743-57778762 None:intergenic 50.0%
TGACCAACCTCGTAGCTAGG+AGG + chr5_2:57776239-57776258 Msa0777990:intron 55.0%
CAACCTCCTAGCTACGAGGT+TGG - chr5_2:57776245-57776264 None:intergenic 55.0%
CAACCTCGTAGCTAGGAGGT+TGG + chr5_2:57776243-57776262 Msa0777990:intron 55.0%
TTGCCAACCTCCTAGCTACG+AGG - chr5_2:57776249-57776268 None:intergenic 55.0%
AGCTAGGAGGTTGGCAAGTG+TGG + chr5_2:57776252-57776271 Msa0777990:intron 55.0%
AACGTTGGTCGATGGGGTGA+TGG + chr5_2:57776321-57776340 Msa0777990:intron 55.0%
!!! AGGCTTTTGACTCGGTGGGT+TGG + chr5_2:57776409-57776428 Msa0777990:intron 55.0%
!!! CTTTTGACTCGGTGGGTTGG+AGG + chr5_2:57776412-57776431 Msa0777990:intron 55.0%
!!! CTCGGTGGGTTGGAGGTTTT+TGG + chr5_2:57776419-57776438 Msa0777990:intron 55.0%
TGCGGTTGAGTGTGTGTGTG+TGG + chr5_2:57776468-57776487 Msa0777990:intron 55.0%
GCGGTTGAGTGTGTGTGTGT+GGG + chr5_2:57776469-57776488 Msa0777990:intron 55.0%
CGGTTGAGTGTGTGTGTGTG+GGG + chr5_2:57776470-57776489 Msa0777990:intron 55.0%
TTGAGTGTGTGTGTGTGGGG+AGG + chr5_2:57776473-57776492 Msa0777990:intron 55.0%
TGAGTGTGTGTGTGTGGGGA+GGG + chr5_2:57776474-57776493 Msa0777990:intron 55.0%
ATGGTTCAAATGGGGGAGGG+TGG + chr5_2:57776843-57776862 Msa0777990:intron 55.0%
TGGTTCAAATGGGGGAGGGT+GGG + chr5_2:57776844-57776863 Msa0777990:intron 55.0%
! GGAAGGCTTGATGGTAAGGG+AGG + chr5_2:57777027-57777046 Msa0777990:intron 55.0%
!! ATTGGGAGTGTTGGGGAGGA+GGG + chr5_2:57777299-57777318 Msa0777990:intron 55.0%
! TGATTTGGCACGCGGCGATT+TGG + chr5_2:57777357-57777376 Msa0777990:intron 55.0%
! ACGAATGGACTTGGAACCCG+AGG + chr5_2:57777501-57777520 Msa0777990:intron 55.0%
! CGAATGGACTTGGAACCCGA+GGG + chr5_2:57777502-57777521 Msa0777990:intron 55.0%
GATTGCGCGCTAAGGGAGTT+TGG + chr5_2:57777524-57777543 Msa0777990:intron 55.0%
AACACTGAACCGAAGGCAGC+AGG - chr5_2:57777570-57777589 None:intergenic 55.0%
AGTGTTGTCTGCTGTGCTGC+TGG + chr5_2:57777584-57777603 Msa0777990:intron 55.0%
!!! GGTTTGAGTTTTGGGGGGAC+TGG + chr5_2:57777642-57777661 Msa0777990:intron 55.0%
!!! GGCTGGCAGTTTTTGGCCAT+TGG + chr5_2:57777718-57777737 Msa0777990:intron 55.0%
! GCTCTGAGTTCTAGCGGTTG+TGG + chr5_2:57777769-57777788 Msa0777990:intron 55.0%
! AGTTCTAGCGGTTGTGGGGA+TGG + chr5_2:57777775-57777794 Msa0777990:intron 55.0%
GTTCTAGCGGTTGTGGGGAT+GGG + chr5_2:57777776-57777795 Msa0777990:intron 55.0%
!! CGGTTGTGGGGATGGGTTTT+TGG + chr5_2:57777783-57777802 Msa0777990:intron 55.0%
!! GAGAGGGCACCAAAACTCTC+TGG + chr5_2:57778012-57778031 Msa0777990:intron 55.0%
CCGAGTTTCAGACGGTTCTC+GGG - chr5_2:57778166-57778185 None:intergenic 55.0%
! CCCGAGAACCGTCTGAAACT+CGG + chr5_2:57778163-57778182 Msa0777990:CDS 55.0%
CCCGAGTTTCAGACGGTTCT+CGG - chr5_2:57778167-57778186 None:intergenic 55.0%
! CCGAGAACCGTCTGAAACTC+GGG + chr5_2:57778164-57778183 Msa0777990:CDS 55.0%
ACCATAAGCCCCAGTAGTGC+CGG - chr5_2:57778291-57778310 None:intergenic 55.0%
TGGGGACAGCCTCATTGCCA+TGG - chr5_2:57776114-57776133 None:intergenic 60.0%
!! GGCTGTCCCCATAGCCTTGT+TGG + chr5_2:57776123-57776142 Msa0777990:intron 60.0%
GAGTGTGTGTGTGTGGGGAG+GGG + chr5_2:57776475-57776494 Msa0777990:intron 60.0%
AGTGTGTGTGTGTGGGGAGG+GGG + chr5_2:57776476-57776495 Msa0777990:intron 60.0%
!! TTTTGGAGGGTGGCGTGGAG+AGG + chr5_2:57776748-57776767 Msa0777990:intron 60.0%
GGTTCAAATGGGGGAGGGTG+GGG + chr5_2:57776845-57776864 Msa0777990:intron 60.0%
GTTCAAATGGGGGAGGGTGG+GGG + chr5_2:57776846-57776865 Msa0777990:intron 60.0%
! GAGGGTGGGGGTTTTCTTGG+AGG + chr5_2:57776858-57776877 Msa0777990:intron 60.0%
!! GTCCATTGGGAGTGTTGGGG+AGG + chr5_2:57777295-57777314 Msa0777990:intron 60.0%
CTCCTCCCCAACACTCCCAA+TGG - chr5_2:57777300-57777319 None:intergenic 60.0%
!! CATTGGGAGTGTTGGGGAGG+AGG + chr5_2:57777298-57777317 Msa0777990:intron 60.0%
!! CGCGGCGTTGGATTTTGGGA+AGG + chr5_2:57777453-57777472 Msa0777990:intron 60.0%
TCCCTTAGCGCGCAATCCCT+CGG - chr5_2:57777521-57777540 None:intergenic 60.0%
TCAGAGCTGCCCCGAAGGAA+AGG - chr5_2:57777756-57777775 None:intergenic 60.0%
AGAACTCAGAGCTGCCCCGA+AGG - chr5_2:57777761-57777780 None:intergenic 60.0%
!! GGGGCAGCTCTGAGTTCTAG+CGG + chr5_2:57777763-57777782 Msa0777990:intron 60.0%
ACGGTTCTCGGGTTTGCCTG+TGG - chr5_2:57778155-57778174 None:intergenic 60.0%
GTGTGTGTGTGTGGGGAGGG+GGG + chr5_2:57776477-57776496 Msa0777990:intron 65.0%
!! CGGGTTTTTGGAGGGTGGCG+TGG + chr5_2:57776743-57776762 Msa0777990:intron 65.0%
GAGGGTGGCGTGGAGAGGAA+TGG + chr5_2:57776753-57776772 Msa0777990:intron 65.0%
! GGGGAGGGTGGGGGTTTTCT+TGG + chr5_2:57776855-57776874 Msa0777990:intron 65.0%
ACCCGAGGGATTGCGCGCTA+AGG + chr5_2:57777516-57777535 Msa0777990:intron 65.0%
CCCTTAGCGCGCAATCCCTC+GGG - chr5_2:57777520-57777539 None:intergenic 65.0%
CCCGAGGGATTGCGCGCTAA+GGG + chr5_2:57777517-57777536 Msa0777990:intron 65.0%
GAGGTTGGGCCTGCTGCCTT+CGG + chr5_2:57777558-57777577 Msa0777990:intron 65.0%
TTGCGCACAGGCTGTGCTGC+TGG + chr5_2:57777616-57777635 Msa0777990:intron 65.0%
! CACAGGCTGTGCTGCTGGTC+TGG + chr5_2:57777621-57777640 Msa0777990:intron 65.0%
GCCGGCACTACTGGGGCTTA+TGG + chr5_2:57778287-57778306 Msa0777990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 57775330 57779067 57775330 ID=Msa0777990;Name=Msa0777990
chr5_2 mRNA 57775330 57779067 57775330 ID=Msa0777990-mRNA-1;Parent=Msa0777990;Name=Msa0777990-mRNA-1;_AED=0.04;_eAED=0.04;_QI=122|1|1|1|1|1|4|705|150
chr5_2 exon 57775330 57775567 57775330 ID=Msa0777990-mRNA-1:exon:17049;Parent=Msa0777990-mRNA-1
chr5_2 exon 57775657 57775732 57775657 ID=Msa0777990-mRNA-1:exon:17050;Parent=Msa0777990-mRNA-1
chr5_2 exon 57778013 57778185 57778013 ID=Msa0777990-mRNA-1:exon:17051;Parent=Msa0777990-mRNA-1
chr5_2 exon 57778275 57779067 57778275 ID=Msa0777990-mRNA-1:exon:17052;Parent=Msa0777990-mRNA-1
chr5_2 five_prime_UTR 57775330 57775451 57775330 ID=Msa0777990-mRNA-1:five_prime_utr;Parent=Msa0777990-mRNA-1
chr5_2 CDS 57775452 57775567 57775452 ID=Msa0777990-mRNA-1:cds;Parent=Msa0777990-mRNA-1
chr5_2 CDS 57775657 57775732 57775657 ID=Msa0777990-mRNA-1:cds;Parent=Msa0777990-mRNA-1
chr5_2 CDS 57778013 57778185 57778013 ID=Msa0777990-mRNA-1:cds;Parent=Msa0777990-mRNA-1
chr5_2 CDS 57778275 57778362 57778275 ID=Msa0777990-mRNA-1:cds;Parent=Msa0777990-mRNA-1
chr5_2 three_prime_UTR 57778363 57779067 57778363 ID=Msa0777990-mRNA-1:three_prime_utr;Parent=Msa0777990-mRNA-1
Gene Sequence

>Msa0777990

ATGGCGACACTGGTAGAATTGTTACCAAAGGAATATGGCTTTGTGGCAATCGTTCTCGTTCTCTACACCTTCCTCAATTTCTTCATGACCTTTCAAGTTGGCAAAGCTCGCAAGAAGTACAAAGTTTTTTATCCAACCCTTTATGCTTCTGAATCTGAAAACAAAGATGCCAATCTCTTCAATTGCGTTCAGAGAGGGCACCAAAACTCTCTGGAAACGATGCCCATTTTCTTCATGTTGATGATTTTGGGAGGGCTGAAGCATCCTATCATTTGTGCTGTCCTTGGAGTACTTTACACTGTTGCTAGATACTTCTACTTCGTAGGCTATGCCACAGGCAAACCCGAGAACCGTCTGAAACTCGGGGGATTTTTTATGCCGGCACTACTGGGGCTTATGGTGTCTACACTTTCATTTGGATGGAGTCTTGTCAATCAGCCTGCAAACCAGTGA
Protein sequence

>Msa0777990

MATLVELLPKEYGFVAIVLVLYTFLNFFMTFQVGKARKKYKVFYPTLYASESENKDANLFNCVQRGHQNSLETMPIFFMLMILGGLKHPIICAVLGVLYTVARYFYFVGYATGKPENRLKLGGFFMPALLGLMVSTLSFGWSLVNQPANQ*