AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855570 MtrunA17_Chr5g0433481 84.431 167 9 1 1 167 1 150 5.56e-98 279
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855570 AT1G65820.2 60.248 161 63 1 1 161 1 160 6.36e-64 194
Msa0855570 AT1G65820.1 60.248 161 47 1 1 161 1 144 2.38e-63 192
Msa0855570 AT1G65820.3 62.590 139 35 1 1 139 1 122 2.93e-56 175

Find 74 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTCATGTTGATGATTT+TGG 0.072271 5_4:-48908998 Msa0855570:CDS
TTGGCCAAATATGTTGTTTC+TGG 0.148618 5_4:+48907998 None:intergenic
AATCATCAACATGAAGAAAA+TGG 0.174934 5_4:+48909002 None:intergenic
ATACGGTTTGGATACGTTTA+TGG 0.180137 5_4:+48908137 None:intergenic
TTACCCAGAAACAACATATT+TGG 0.195988 5_4:-48908002 Msa0855570:three_prime_UTR
GAGTATTAGCCTTTCTTATT+TGG 0.212862 5_4:-48908210 Msa0855570:three_prime_UTR
CGCAGCATATATCCCAAGTA+TGG 0.286186 5_4:+48908108 None:intergenic
GCACAAACCAAACTTGGATT+TGG 0.295085 5_4:+48908035 None:intergenic
CCCGAGTTTCAGACGGTTCT+CGG 0.306867 5_4:+48908882 None:intergenic
AGTTCAAATCACTGGTTTGC+AGG 0.309105 5_4:+48908698 None:intergenic
CATTATTCATTTGCAGTCCT+TGG 0.316092 5_4:+48908622 None:intergenic
AGCCTTTGTATGTTACAATA+AGG 0.341454 5_4:-48908564 Msa0855570:three_prime_UTR
TTTCAGATTCAGAAGCATAA+AGG 0.349675 5_4:+48911363 None:intergenic
ACCGTATTTGCACCCATACT+TGG 0.354211 5_4:-48908121 Msa0855570:three_prime_UTR
GCATCGTTTCCAGAGAGTTT+TGG 0.363401 5_4:+48909025 None:intergenic
ATGGTGTCTACACTTTCATT+TGG 0.365189 5_4:-48908740 Msa0855570:CDS
CCTATCATTTGTGCTGTCCT+TGG 0.365216 5_4:-48908961 Msa0855570:CDS
GAATTGTTACCAAAGGAATA+TGG 0.366678 5_4:-48911577 Msa0855570:CDS
GCCGGCACTACTGGGGCTTA+TGG 0.381706 5_4:-48908759 Msa0855570:CDS
CCCAAGTATGGGTGCAAATA+CGG 0.388717 5_4:+48908120 None:intergenic
CACAAACCAAACTTGGATTT+GGG 0.393070 5_4:+48908036 None:intergenic
AAGGCTAATACTCCAAAATC+TGG 0.398880 5_4:+48908220 None:intergenic
CAAAATGCACAAACCAAACT+TGG 0.399719 5_4:+48908029 None:intergenic
TGGCCAAATATGTTGTTTCT+GGG 0.400903 5_4:+48907999 None:intergenic
GTATCTCCCAAATCCAAGTT+TGG 0.402590 5_4:-48908042 Msa0855570:three_prime_UTR
CAAGCTCTTCAATTGCGTTC+AGG 0.403771 5_4:-48911330 Msa0855570:intron
TTCAGATTCAGAAGCATAAA+GGG 0.404409 5_4:+48911364 None:intergenic
GCCACAAAGCCATATTCCTT+TGG 0.406868 5_4:+48911568 None:intergenic
TTGGCCTTGTTTAACAGTAA+AGG 0.430630 5_4:-48908191 Msa0855570:three_prime_UTR
ATCATCAACATGAAGAAAAT+GGG 0.438900 5_4:+48909003 None:intergenic
CAGATGTCTCATTGCAGACT+TGG 0.440102 5_4:-48908363 Msa0855570:three_prime_UTR
CCAAGGACAGCACAAATGAT+AGG 0.451302 5_4:+48908961 None:intergenic
GAGATAAAAGTTCAAATCAC+TGG 0.454575 5_4:+48908690 None:intergenic
AACTGTAATATCTAAAATAC+AGG 0.460383 5_4:+48908066 None:intergenic
CCGAGAACCGTCTGAAACTC+GGG 0.463273 5_4:-48908882 Msa0855570:intron
GAGAGGGCACCAAAACTCTC+TGG 0.465785 5_4:-48909034 Msa0855570:CDS
CCGAGTTTCAGACGGTTCTC+GGG 0.472239 5_4:+48908883 None:intergenic
TGTCTACACTTTCATTTGGA+TGG 0.477493 5_4:-48908736 Msa0855570:CDS
GTATGGGTGCAAATACGGTT+TGG 0.478873 5_4:+48908125 None:intergenic
CAATGAGATGAGTAATGTAC+TGG 0.484454 5_4:+48911662 None:intergenic
CCCGAGAACCGTCTGAAACT+CGG 0.487007 5_4:-48908883 Msa0855570:CDS
GCGAGCTTTGCCAACTTGAA+AGG 0.489911 5_4:+48911504 None:intergenic
ACCAAAGGAATATGGCTTTG+TGG 0.496319 5_4:-48911569 Msa0855570:CDS
ACCATAAGCCCCAGTAGTGC+CGG 0.497715 5_4:+48908758 None:intergenic
GAAAGGTCATGAAGAAATTG+AGG 0.509106 5_4:+48911521 None:intergenic
GATTCAGAAGCATAAAGGGT+TGG 0.509643 5_4:+48911368 None:intergenic
TGCTAAAAGTATTTAAGTTG+TGG 0.514267 5_4:-48908334 Msa0855570:three_prime_UTR
TTACTTTGACCACTAGTACA+TGG 0.520685 5_4:+48908300 None:intergenic
TTCTTCATGACCTTTCAAGT+TGG 0.523551 5_4:-48911514 Msa0855570:CDS
ACCTCATCATCAAGAGGCTA+TGG 0.525062 5_4:+48908662 None:intergenic
TTTAAGTTGTGGTAGAACCT+TGG 0.531795 5_4:-48908323 Msa0855570:three_prime_UTR
CCGTATTTGCACCCATACTT+GGG 0.532717 5_4:-48908120 Msa0855570:three_prime_UTR
CTGAACGCAATTGAAGAGCT+TGG 0.540036 5_4:+48911331 None:intergenic
TAAACAAGGCCAAATAAGAA+AGG 0.541354 5_4:+48908201 None:intergenic
AATTGACGACTACACTCTGC+AGG 0.557869 5_4:+48908416 None:intergenic
GAGTGTAGTCGTCAATTCAC+AGG 0.564595 5_4:-48908410 Msa0855570:three_prime_UTR
TGAGTAATGTACTGGTTTCG+TGG 0.568507 5_4:+48911670 None:intergenic
TTAATAACCTCATCATCAAG+AGG 0.568571 5_4:+48908656 None:intergenic
ACCATAGCCTCTTGATGATG+AGG 0.570853 5_4:-48908663 Msa0855570:three_prime_UTR
ACGGTTCTCGGGTTTGCCTG+TGG 0.592329 5_4:+48908894 None:intergenic
GGTCATGAAGAAATTGAGGA+AGG 0.595983 5_4:+48911525 None:intergenic
GCTAGATACTTCTACTTCGT+AGG 0.595990 5_4:-48908922 Msa0855570:CDS
TGTTTGTTGAAATTCCTCAC+AGG 0.599570 5_4:-48911406 Msa0855570:CDS
GCAGCATATATCCCAAGTAT+GGG 0.604149 5_4:+48908109 None:intergenic
GAACCTTGGCCATGTACTAG+TGG 0.609927 5_4:-48908309 Msa0855570:three_prime_UTR
ACATGTTTAGAGTTTCAACA+TGG 0.610280 5_4:-48908541 Msa0855570:three_prime_UTR
GTCCTTATTGTAACATACAA+AGG 0.616409 5_4:+48908562 None:intergenic
TACTTCGTAGGCTATGCCAC+AGG 0.617511 5_4:-48908910 Msa0855570:CDS
TTAATCACCCGAGTTTCAGA+CGG 0.625019 5_4:+48908875 None:intergenic
TGACCACTAGTACATGGCCA+AGG 0.640168 5_4:+48908306 None:intergenic
CAACAGTGTAAAGTACTCCA+AGG 0.641397 5_4:+48908944 None:intergenic
ACTGGTAGAATTGTTACCAA+AGG 0.651792 5_4:-48911584 Msa0855570:CDS
CATGTTTAGAGTTTCAACAT+GGG 0.654346 5_4:-48908540 Msa0855570:three_prime_UTR
TATTAAATAATATAAGACCA+AGG 0.701183 5_4:-48908639 Msa0855570:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATGATATGATTAA+AGG - chr5_4:48910077-48910096 Msa0855570:intron 10.0%
!!! TTTTTAATGATATGATTAAA+GGG - chr5_4:48910078-48910097 Msa0855570:intron 10.0%
!! AAAGTAAAATAAATCATGTT+CGG + chr5_4:48908485-48908504 None:intergenic 15.0%
!! ATATTTGTAACATATCAATA+TGG + chr5_4:48908716-48908735 None:intergenic 15.0%
!! TACAAATATATATATCCTAA+AGG - chr5_4:48908727-48908746 Msa0855570:CDS 15.0%
!! ACAAATATATATATCCTAAA+GGG - chr5_4:48908728-48908747 Msa0855570:CDS 15.0%
!! CAATAAATTGTTAAAAAGAT+AGG + chr5_4:48909569-48909588 None:intergenic 15.0%
!!! CTATCTTTTTAACAATTTAT+TGG - chr5_4:48909567-48909586 Msa0855570:intron 15.0%
!!! TTTTAATGATATGATTAAAG+GGG - chr5_4:48910079-48910098 Msa0855570:intron 15.0%
!! TATTAAATAATATAAGACCA+AGG - chr5_4:48911063-48911082 Msa0855570:intron 15.0%
!!! ATTTGTTTCTTGTTTTTTCT+GGG + chr5_4:48908077-48908096 None:intergenic 20.0%
!!! ATTTTACAAAATAAACTGAC+TGG - chr5_4:48908528-48908547 Msa0855570:three_prime_UTR 20.0%
!! ATTTAGTATTAACAATTCCA+TGG - chr5_4:48908757-48908776 Msa0855570:CDS 20.0%
!! AATTATTTCGACTAATCAAT+TGG - chr5_4:48908945-48908964 Msa0855570:CDS 20.0%
!! TAAAATCAAACAATCTTTAC+TGG + chr5_4:48909036-48909055 None:intergenic 20.0%
!!! TTTGTTATAGAGAAAATTCT+TGG + chr5_4:48909462-48909481 None:intergenic 20.0%
!! TAACAATTTATTGGAAGATT+TGG - chr5_4:48909576-48909595 Msa0855570:intron 20.0%
!!! TTATTTTTTTGAATCAGCAA+AGG + chr5_4:48910566-48910585 None:intergenic 20.0%
!! TTGTTATAATATTCTGTGTT+TGG - chr5_4:48910637-48910656 Msa0855570:intron 20.0%
!! AATTACAGATATAACACTTA+TGG + chr5_4:48910866-48910885 None:intergenic 20.0%
!! AGTTACATATTAATCAATCA+TGG + chr5_4:48910893-48910912 None:intergenic 20.0%
!! AAATATAAAACCAAAAACAG+GGG + chr5_4:48911461-48911480 None:intergenic 20.0%
!! CAAATATAAAACCAAAAACA+GGG + chr5_4:48911462-48911481 None:intergenic 20.0%
!!! AACTGTAATATCTAAAATAC+AGG + chr5_4:48911639-48911658 None:intergenic 20.0%
!!! GATTTGTTTCTTGTTTTTTC+TGG + chr5_4:48908078-48908097 None:intergenic 25.0%
!!! GTTTTGTGATTTTGTTTACA+AGG - chr5_4:48908273-48908292 Msa0855570:three_prime_UTR 25.0%
! GGATAAATGTTGAATAATCT+AGG - chr5_4:48908549-48908568 Msa0855570:three_prime_UTR 25.0%
! AAATGTTGAATAATCTAGGA+TGG - chr5_4:48908553-48908572 Msa0855570:three_prime_UTR 25.0%
! TACTAAATATCATACCCTTT+AGG + chr5_4:48908745-48908764 None:intergenic 25.0%
!!! TTTAAAAGTCGATTTTGAGA+AGG - chr5_4:48909052-48909071 Msa0855570:intron 25.0%
! GGAAATTAATTTCTTCTGTT+GGG + chr5_4:48909192-48909211 None:intergenic 25.0%
! TGGAAATTAATTTCTTCTGT+TGG + chr5_4:48909193-48909212 None:intergenic 25.0%
! ACAGAAGAAATTAATTTCCA+AGG - chr5_4:48909193-48909212 Msa0855570:intron 25.0%
! AATTTATTGGAAGATTTGGA+AGG - chr5_4:48909580-48909599 Msa0855570:intron 25.0%
! AAAATCTATGTATGTGAAGT+TGG - chr5_4:48909669-48909688 Msa0855570:intron 25.0%
!! AAAGTGTTATTACTTGTGTT+TGG - chr5_4:48909822-48909841 Msa0855570:intron 25.0%
! CATTCGTAATATAAACACAA+CGG + chr5_4:48910158-48910177 None:intergenic 25.0%
! GATAGACAAAAAAAGAATCT+AGG + chr5_4:48910606-48910625 None:intergenic 25.0%
! ATCATCAACATGAAGAAAAT+GGG + chr5_4:48910702-48910721 None:intergenic 25.0%
! AATCATCAACATGAAGAAAA+TGG + chr5_4:48910703-48910722 None:intergenic 25.0%
!!! TTTCTTCATGTTGATGATTT+TGG - chr5_4:48910704-48910723 Msa0855570:intron 25.0%
!!! TTCTTCATGTTGATGATTTT+GGG - chr5_4:48910705-48910724 Msa0855570:intron 25.0%
! AACTGAATTTATATGCTAAC+AGG - chr5_4:48910909-48910928 Msa0855570:intron 25.0%
! ACTGAATTTATATGCTAACA+GGG - chr5_4:48910910-48910929 Msa0855570:intron 25.0%
!!! TGCTAAAAGTATTTAAGTTG+TGG - chr5_4:48911368-48911387 Msa0855570:CDS 25.0%
! GCAAATATAAAACCAAAAAC+AGG + chr5_4:48911463-48911482 None:intergenic 25.0%
!! GTTTTATATTTGCCAGATTT+TGG - chr5_4:48911470-48911489 Msa0855570:intron 25.0%
!! TTTTCCTTTACTGTTAAACA+AGG + chr5_4:48911518-48911537 None:intergenic 25.0%
ACAAATCCATCATCCAAAAA+TGG - chr5_4:48908091-48908110 Msa0855570:three_prime_UTR 30.0%
GAATTGTTACCAAAGGAATA+TGG - chr5_4:48908125-48908144 Msa0855570:three_prime_UTR 30.0%
TAAAAAACTTTGTACCTGTG+AGG + chr5_4:48908313-48908332 None:intergenic 30.0%
! TTCAGATTCAGAAGCATAAA+GGG + chr5_4:48908341-48908360 None:intergenic 30.0%
! TTTCAGATTCAGAAGCATAA+AGG + chr5_4:48908342-48908361 None:intergenic 30.0%
!! GAATAATCTAGGATGGATTT+TGG - chr5_4:48908560-48908579 Msa0855570:three_prime_UTR 30.0%
ATACTACCTAACAAGAAAAG+AGG + chr5_4:48908871-48908890 None:intergenic 30.0%
!! AATCAATTGGCCTTTCTAAA+AGG - chr5_4:48908958-48908977 Msa0855570:CDS 30.0%
!! CAACGTTATACCTTTTAGAA+AGG + chr5_4:48908971-48908990 None:intergenic 30.0%
! CTTTCTAAAAGGTATAACGT+TGG - chr5_4:48908969-48908988 Msa0855570:CDS 30.0%
!! GAGGTTTTTGGATATATCAA+TGG - chr5_4:48909094-48909113 Msa0855570:intron 30.0%
! TCAAAATTGGTTTAACACAG+AGG - chr5_4:48909353-48909372 Msa0855570:intron 30.0%
CAAAAGAAATGTGATACCAA+TGG - chr5_4:48909799-48909818 Msa0855570:intron 30.0%
CAAGTAATAACACTTTCCAT+TGG + chr5_4:48909818-48909837 None:intergenic 30.0%
ACAATGTAAAAGAAGGTGAT+TGG + chr5_4:48909870-48909889 None:intergenic 30.0%
CCAAAGAACAATGTAAAAGA+AGG + chr5_4:48909877-48909896 None:intergenic 30.0%
! CCTTCTTTTACATTGTTCTT+TGG - chr5_4:48909874-48909893 Msa0855570:intron 30.0%
! TTTTACATTGTTCTTTGGCA+AGG - chr5_4:48909879-48909898 Msa0855570:intron 30.0%
TGAATAAGGAAATCCGAAAA+AGG - chr5_4:48909996-48910015 Msa0855570:intron 30.0%
! AATCAACCTCAAACCTTTTT+CGG + chr5_4:48910012-48910031 None:intergenic 30.0%
! AAAAAGGTTTGAGGTTGATT+TGG - chr5_4:48910012-48910031 Msa0855570:intron 30.0%
TAATGATATGATTAAAGGGG+TGG - chr5_4:48910082-48910101 Msa0855570:intron 30.0%
CGTTGTGTTTATATTACGAA+TGG - chr5_4:48910156-48910175 Msa0855570:intron 30.0%
! GTTTATATTACGAATGGACT+TGG - chr5_4:48910162-48910181 Msa0855570:intron 30.0%
AAAGGAAGAAACAAGTACAA+AGG + chr5_4:48910499-48910518 None:intergenic 30.0%
! CTTCCTTTATGCAAACTTTT+TGG - chr5_4:48910511-48910530 Msa0855570:intron 30.0%
CTGAATTTATATGCTAACAG+GGG - chr5_4:48910911-48910930 Msa0855570:intron 30.0%
GAGATAAAAGTTCAAATCAC+TGG + chr5_4:48911015-48911034 None:intergenic 30.0%
TTAATAACCTCATCATCAAG+AGG + chr5_4:48911049-48911068 None:intergenic 30.0%
AGCCTTTGTATGTTACAATA+AGG - chr5_4:48911138-48911157 Msa0855570:intron 30.0%
GTCCTTATTGTAACATACAA+AGG + chr5_4:48911143-48911162 None:intergenic 30.0%
! ACATGTTTAGAGTTTCAACA+TGG - chr5_4:48911161-48911180 Msa0855570:intron 30.0%
! CATGTTTAGAGTTTCAACAT+GGG - chr5_4:48911162-48911181 Msa0855570:intron 30.0%
!! GAGTATTAGCCTTTCTTATT+TGG - chr5_4:48911492-48911511 Msa0855570:intron 30.0%
TAAACAAGGCCAAATAAGAA+AGG + chr5_4:48911504-48911523 None:intergenic 30.0%
TTACCCAGAAACAACATATT+TGG - chr5_4:48911700-48911719 Msa0855570:five_prime_UTR 30.0%
CAATGAGATGAGTAATGTAC+TGG + chr5_4:48908043-48908062 None:intergenic 35.0%
ACTGGTAGAATTGTTACCAA+AGG - chr5_4:48908118-48908137 Msa0855570:three_prime_UTR 35.0%
GAAAGGTCATGAAGAAATTG+AGG + chr5_4:48908184-48908203 None:intergenic 35.0%
! TTCTTCATGACCTTTCAAGT+TGG - chr5_4:48908188-48908207 Msa0855570:three_prime_UTR 35.0%
! TGTTTGTTGAAATTCCTCAC+AGG - chr5_4:48908296-48908315 Msa0855570:three_prime_UTR 35.0%
TGATTCCTATGTTCCTTGTT+GGG - chr5_4:48908661-48908680 Msa0855570:three_prime_UTR 35.0%
TTAACAATTCCATGGCAATG+AGG - chr5_4:48908765-48908784 Msa0855570:CDS 35.0%
CGATAATCTTTCAACTCCAA+AGG + chr5_4:48908847-48908866 None:intergenic 35.0%
! TATCGTCCTCTTTTCTTGTT+AGG - chr5_4:48908862-48908881 Msa0855570:intron 35.0%
!! TTTTGAGAAGGCTTTTGACT+CGG - chr5_4:48909064-48909083 Msa0855570:intron 35.0%
GATATATCAATGGTGAGAGT+TGG - chr5_4:48909104-48909123 Msa0855570:intron 35.0%
ATGTCGATACTTGTGAATGA+TGG - chr5_4:48909166-48909185 Msa0855570:intron 35.0%
! AAGGATTTTGTGAACCTAGA+GGG - chr5_4:48909321-48909340 Msa0855570:intron 35.0%
!! TACAAGTATGGGTTTTTGGA+GGG - chr5_4:48909398-48909417 Msa0855570:intron 35.0%
AAATAACCAAGACAGAGATG+TGG - chr5_4:48909479-48909498 Msa0855570:intron 35.0%
ATGTGGATAGATGGTTCAAA+TGG - chr5_4:48909496-48909515 Msa0855570:intron 35.0%
TGTGGATAGATGGTTCAAAT+GGG - chr5_4:48909497-48909516 Msa0855570:intron 35.0%
AAGATTTGGAAGGCTATACA+AGG - chr5_4:48909590-48909609 Msa0855570:intron 35.0%
! CAAGGCATCAAGAATATGAT+AGG - chr5_4:48909608-48909627 Msa0855570:intron 35.0%
! AAGAATATGATAGGTGGACT+TGG - chr5_4:48909617-48909636 Msa0855570:intron 35.0%
TCTATGTATGTGAAGTTGGA+AGG - chr5_4:48909673-48909692 Msa0855570:intron 35.0%
AGAGGATGTTTCGTCAAATT+TGG - chr5_4:48909741-48909760 Msa0855570:intron 35.0%
TTCGTCAAATTTGGAAGTCT+AGG - chr5_4:48909750-48909769 Msa0855570:intron 35.0%
TCGTCAAATTTGGAAGTCTA+GGG - chr5_4:48909751-48909770 Msa0855570:intron 35.0%
!! TACTTGTGTTTGGTGTATGA+CGG - chr5_4:48909832-48909851 Msa0855570:intron 35.0%
GTTCTTTGGCAAGGAATATT+TGG - chr5_4:48909888-48909907 Msa0855570:intron 35.0%
TTTGGCAAGGAATATTTGGT+TGG - chr5_4:48909892-48909911 Msa0855570:intron 35.0%
ATATTTGGTTGGAACTGATG+TGG - chr5_4:48909903-48909922 Msa0855570:intron 35.0%
! TCCAAACTTGTTTGTCCATT+GGG - chr5_4:48909952-48909971 Msa0855570:intron 35.0%
!! ACAAAGGTGCTGTAAATATG+TGG + chr5_4:48910483-48910502 None:intergenic 35.0%
GCACCAAAAAGTTTGCATAA+AGG + chr5_4:48910517-48910536 None:intergenic 35.0%
!!! TTCATGTTGATGATTTTGGG+AGG - chr5_4:48910708-48910727 Msa0855570:intron 35.0%
!!! TCATGTTGATGATTTTGGGA+GGG - chr5_4:48910709-48910728 Msa0855570:intron 35.0%
!!! TAACAGGGGATTTTTTATGC+CGG - chr5_4:48910925-48910944 Msa0855570:intron 35.0%
ATGGTGTCTACACTTTCATT+TGG - chr5_4:48910962-48910981 Msa0855570:intron 35.0%
TGTCTACACTTTCATTTGGA+TGG - chr5_4:48910966-48910985 Msa0855570:intron 35.0%
CATTATTCATTTGCAGTCCT+TGG + chr5_4:48911083-48911102 None:intergenic 35.0%
!! TTTAAGTTGTGGTAGAACCT+TGG - chr5_4:48911379-48911398 Msa0855570:CDS 35.0%
TTACTTTGACCACTAGTACA+TGG + chr5_4:48911405-48911424 None:intergenic 35.0%
! TACACTATTTCCCCTGTTTT+TGG - chr5_4:48911448-48911467 Msa0855570:intron 35.0%
AAGGCTAATACTCCAAAATC+TGG + chr5_4:48911485-48911504 None:intergenic 35.0%
!! TTGGCCTTGTTTAACAGTAA+AGG - chr5_4:48911511-48911530 Msa0855570:CDS 35.0%
! ATACGGTTTGGATACGTTTA+TGG + chr5_4:48911568-48911587 None:intergenic 35.0%
CACAAACCAAACTTGGATTT+GGG + chr5_4:48911669-48911688 None:intergenic 35.0%
CAAAATGCACAAACCAAACT+TGG + chr5_4:48911676-48911695 None:intergenic 35.0%
!! TGAGTAATGTACTGGTTTCG+TGG + chr5_4:48908035-48908054 None:intergenic 40.0%
! ACCAAAGGAATATGGCTTTG+TGG - chr5_4:48908133-48908152 Msa0855570:three_prime_UTR 40.0%
GGTCATGAAGAAATTGAGGA+AGG + chr5_4:48908180-48908199 None:intergenic 40.0%
! GATTCAGAAGCATAAAGGGT+TGG + chr5_4:48908337-48908356 None:intergenic 40.0%
!! GTGGAAGTGTCAATGAGTAA+TGG + chr5_4:48908424-48908443 None:intergenic 40.0%
ATCTTATGCCCTGTTTGGTT+TGG + chr5_4:48908449-48908468 None:intergenic 40.0%
TACGAATCTTATGCCCTGTT+TGG + chr5_4:48908454-48908473 None:intergenic 40.0%
GTGATTCCTATGTTCCTTGT+TGG - chr5_4:48908660-48908679 Msa0855570:three_prime_UTR 40.0%
GATTCCTATGTTCCTTGTTG+GGG - chr5_4:48908662-48908681 Msa0855570:three_prime_UTR 40.0%
TATACCCCAACAAGGAACAT+AGG + chr5_4:48908669-48908688 None:intergenic 40.0%
TCATCAACTATACCCCAACA+AGG + chr5_4:48908677-48908696 None:intergenic 40.0%
AAATACGCCAACAAGGCTAT+GGG + chr5_4:48908796-48908815 None:intergenic 40.0%
AAAATACGCCAACAAGGCTA+TGG + chr5_4:48908797-48908816 None:intergenic 40.0%
!!! AGCCTTGTTGGCGTATTTTT+TGG - chr5_4:48908798-48908817 Msa0855570:intron 40.0%
CACCAAAAAATACGCCAACA+AGG + chr5_4:48908803-48908822 None:intergenic 40.0%
!! CCAAAGGTGAGTTGACTTTT+GGG + chr5_4:48908831-48908850 None:intergenic 40.0%
!! TCCAAAGGTGAGTTGACTTT+TGG + chr5_4:48908832-48908851 None:intergenic 40.0%
! AAAGGTATAACGTTGGTCGA+TGG - chr5_4:48908976-48908995 Msa0855570:CDS 40.0%
AAGGTATAACGTTGGTCGAT+GGG - chr5_4:48908977-48908996 Msa0855570:CDS 40.0%
!! TTCCAAGGTTACCGATTTGT+TGG - chr5_4:48909208-48909227 Msa0855570:intron 40.0%
TTCCAACAAATCGGTAACCT+TGG + chr5_4:48909213-48909232 None:intergenic 40.0%
!! AAGGTTACCGATTTGTTGGA+AGG - chr5_4:48909212-48909231 Msa0855570:intron 40.0%
AACACCTCCTTCCAACAAAT+CGG + chr5_4:48909222-48909241 None:intergenic 40.0%
GGTGGAGAAATATGGTCAAA+AGG - chr5_4:48909242-48909261 Msa0855570:intron 40.0%
!! TCAAAAGGCTACCGATTTGT+TGG - chr5_4:48909257-48909276 Msa0855570:intron 40.0%
ACTACCACTCACCAACAAAT+CGG + chr5_4:48909271-48909290 None:intergenic 40.0%
CACCATCTAGAAGCAAAATG+CGG + chr5_4:48909300-48909319 None:intergenic 40.0%
!!! TTTTGCTTCTAGATGGTGGA+AGG - chr5_4:48909302-48909321 Msa0855570:intron 40.0%
! GAAGGATTTTGTGAACCTAG+AGG - chr5_4:48909320-48909339 Msa0855570:intron 40.0%
! ATTTTGTGAACCTAGAGGGA+TGG - chr5_4:48909325-48909344 Msa0855570:intron 40.0%
!! GTAGTGAGGAAAGTTGGTAA+CGG - chr5_4:48909375-48909394 Msa0855570:intron 40.0%
!! AGTTGGTAACGGTACAAGTA+TGG - chr5_4:48909386-48909405 Msa0855570:intron 40.0%
!! GTTGGTAACGGTACAAGTAT+GGG - chr5_4:48909387-48909406 Msa0855570:intron 40.0%
! ACGGTACAAGTATGGGTTTT+TGG - chr5_4:48909394-48909413 Msa0855570:intron 40.0%
!! GTACAAGTATGGGTTTTTGG+AGG - chr5_4:48909397-48909416 Msa0855570:intron 40.0%
ATCTATCCACATCTCTGTCT+TGG + chr5_4:48909488-48909507 None:intergenic 40.0%
AAGACAGAGATGTGGATAGA+TGG - chr5_4:48909487-48909506 Msa0855570:intron 40.0%
GTGGATAGATGGTTCAAATG+GGG - chr5_4:48909498-48909517 Msa0855570:intron 40.0%
TGGATAGATGGTTCAAATGG+GGG - chr5_4:48909499-48909518 Msa0855570:intron 40.0%
GGCATCAAGAATATGATAGG+TGG - chr5_4:48909611-48909630 Msa0855570:intron 40.0%
ATCGTACGAAGGATGAAAAG+AGG - chr5_4:48909723-48909742 Msa0855570:intron 40.0%
CAATGGACAAACAAGTTTGG+AGG + chr5_4:48909953-48909972 None:intergenic 40.0%
! CTCCAAACTTGTTTGTCCAT+TGG - chr5_4:48909951-48909970 Msa0855570:intron 40.0%
TCCCAATGGACAAACAAGTT+TGG + chr5_4:48909956-48909975 None:intergenic 40.0%
GGAAATCCGAAAAAGGTTTG+AGG - chr5_4:48910003-48910022 Msa0855570:intron 40.0%
!! TTTGAGGTTGATTTGGTACG+CGG - chr5_4:48910019-48910038 Msa0855570:intron 40.0%
TGATATGATTAAAGGGGTGG+AGG - chr5_4:48910085-48910104 Msa0855570:intron 40.0%
! AGGAGGTGAAAGTTATTTCG+CGG - chr5_4:48910105-48910124 Msa0855570:intron 40.0%
!!! GAGTTTGGTGTTTTGCTAAG+AGG - chr5_4:48910209-48910228 Msa0855570:intron 40.0%
!! TTGGTGTTTTGCTAAGAGGT+TGG - chr5_4:48910213-48910232 Msa0855570:intron 40.0%
! TGGTGTTTTGCTAAGAGGTT+GGG - chr5_4:48910214-48910233 Msa0855570:intron 40.0%
! CAACAGTGTAAAGTACTCCA+AGG + chr5_4:48910761-48910780 None:intergenic 40.0%
GCTAGATACTTCTACTTCGT+AGG - chr5_4:48910780-48910799 Msa0855570:intron 40.0%
TTAATCACCCGAGTTTCAGA+CGG + chr5_4:48910830-48910849 None:intergenic 40.0%
!!! ATTTTTTATGCCGGCACTAC+TGG - chr5_4:48910934-48910953 Msa0855570:intron 40.0%
!!! TTTTTTATGCCGGCACTACT+GGG - chr5_4:48910935-48910954 Msa0855570:intron 40.0%
!! AGTTCAAATCACTGGTTTGC+AGG + chr5_4:48911007-48911026 None:intergenic 40.0%
GCAGCATATATCCCAAGTAT+GGG + chr5_4:48911596-48911615 None:intergenic 40.0%
GTATCTCCCAAATCCAAGTT+TGG - chr5_4:48911660-48911679 Msa0855570:five_prime_UTR 40.0%
GCACAAACCAAACTTGGATT+TGG + chr5_4:48911670-48911689 None:intergenic 40.0%
!!! GTGTCGCCATTTTTGGATGA+TGG + chr5_4:48908100-48908119 None:intergenic 45.0%
TCATCCAAAAATGGCGACAC+TGG - chr5_4:48908100-48908119 Msa0855570:three_prime_UTR 45.0%
!! TCTACCAGTGTCGCCATTTT+TGG + chr5_4:48908107-48908126 None:intergenic 45.0%
GCCACAAAGCCATATTCCTT+TGG + chr5_4:48908137-48908156 None:intergenic 45.0%
CTGAACGCAATTGAAGAGCT+TGG + chr5_4:48908374-48908393 None:intergenic 45.0%
CAAGCTCTTCAATTGCGTTC+AGG - chr5_4:48908372-48908391 Msa0855570:three_prime_UTR 45.0%
TTCCACAGCCAAACCAAACA+GGG - chr5_4:48908438-48908457 Msa0855570:three_prime_UTR 45.0%
AATACGCCAACAAGGCTATG+GGG + chr5_4:48908795-48908814 None:intergenic 45.0%
CCCAAAAGTCAACTCACCTT+TGG - chr5_4:48908828-48908847 Msa0855570:intron 45.0%
TATTGACCAACCTCCTAGCT+AGG - chr5_4:48908899-48908918 Msa0855570:CDS 45.0%
AGGTATAACGTTGGTCGATG+GGG - chr5_4:48908978-48908997 Msa0855570:CDS 45.0%
!! ATGGTGAGAGTTGGTATGTG+CGG - chr5_4:48909113-48909132 Msa0855570:intron 45.0%
!! GTTACCGATTTGTTGGAAGG+AGG - chr5_4:48909215-48909234 Msa0855570:intron 45.0%
!! GATTTGTTGGAAGGAGGTGT+TGG - chr5_4:48909221-48909240 Msa0855570:intron 45.0%
!! GAGGTGTTGGTGGAGAAATA+TGG - chr5_4:48909234-48909253 Msa0855570:intron 45.0%
! TGCCGCATTTTGCTTCTAGA+TGG - chr5_4:48909295-48909314 Msa0855570:intron 45.0%
! CGCATTTTGCTTCTAGATGG+TGG - chr5_4:48909298-48909317 Msa0855570:intron 45.0%
! AGGGATGGCTAGCTCAAAAT+TGG - chr5_4:48909340-48909359 Msa0855570:intron 45.0%
GGTTTAACACAGAGGTAGTG+AGG - chr5_4:48909361-48909380 Msa0855570:intron 45.0%
ACAGAGGTAGTGAGGAAAGT+TGG - chr5_4:48909369-48909388 Msa0855570:intron 45.0%
!! AAGTATGGGTTTTTGGAGGG+TGG - chr5_4:48909401-48909420 Msa0855570:intron 45.0%
!! GAGAGGAATGGTGTCATTCA+TGG - chr5_4:48909428-48909447 Msa0855570:intron 45.0%
ATAGATGGTTCAAATGGGGG+AGG - chr5_4:48909502-48909521 Msa0855570:intron 45.0%
TAGATGGTTCAAATGGGGGA+GGG - chr5_4:48909503-48909522 Msa0855570:intron 45.0%
GAGGCGAGATTTCTTCGTAT+GGG - chr5_4:48909540-48909559 Msa0855570:intron 45.0%
! TGATAGGTGGACTTGGAAGT+TGG - chr5_4:48909624-48909643 Msa0855570:intron 45.0%
ACTTGGAAGTTGGAGGAAGT+AGG - chr5_4:48909634-48909653 Msa0855570:intron 45.0%
CTTGGAAGTTGGAGGAAGTA+GGG - chr5_4:48909635-48909654 Msa0855570:intron 45.0%
! TGGAGGAAGTAGGGAGTTTT+TGG - chr5_4:48909644-48909663 Msa0855570:intron 45.0%
! GGAGGAAGTAGGGAGTTTTT+GGG - chr5_4:48909645-48909664 Msa0855570:intron 45.0%
TGTGAAGTTGGAAGGCTTGA+TGG - chr5_4:48909681-48909700 Msa0855570:intron 45.0%
! TTGGAAGGCTTGATGGTAAC+TGG - chr5_4:48909688-48909707 Msa0855570:intron 45.0%
! AGGCTTGATGGTAACTGGTA+AGG - chr5_4:48909693-48909712 Msa0855570:intron 45.0%
! GGCTTGATGGTAACTGGTAA+GGG - chr5_4:48909694-48909713 Msa0855570:intron 45.0%
! TTGATGGTAACTGGTAAGGG+AGG - chr5_4:48909697-48909716 Msa0855570:intron 45.0%
!! GTTTGGTGTATGACGGAGAT+TGG - chr5_4:48909839-48909858 Msa0855570:intron 45.0%
TTTGGTTGGAACTGATGTGG+TGG - chr5_4:48909906-48909925 Msa0855570:intron 45.0%
! TGTTTGTCCATTGGGAGTGT+TGG - chr5_4:48909960-48909979 Msa0855570:intron 45.0%
!! GTTTGTCCATTGGGAGTGTT+GGG - chr5_4:48909961-48909980 Msa0855570:intron 45.0%
!! TTTGTCCATTGGGAGTGTTG+GGG - chr5_4:48909962-48909981 Msa0855570:intron 45.0%
! ACGCGGCGATTTGGAAAATT+TGG - chr5_4:48910036-48910055 Msa0855570:intron 45.0%
GAAAATTTGGCAAGCTCGCA+AGG - chr5_4:48910049-48910068 Msa0855570:intron 45.0%
TATGATTAAAGGGGTGGAGG+AGG - chr5_4:48910088-48910107 Msa0855570:intron 45.0%
! TGAAAGTTATTTCGCGGCGT+TGG - chr5_4:48910111-48910130 Msa0855570:intron 45.0%
!! TATTTCGCGGCGTTGGATTT+TGG - chr5_4:48910118-48910137 Msa0855570:intron 45.0%
!! ATTTCGCGGCGTTGGATTTT+GGG - chr5_4:48910119-48910138 Msa0855570:intron 45.0%
!!! TGGTTTTTTGGATTGCGCAC+AGG - chr5_4:48910274-48910293 Msa0855570:intron 45.0%
! TGCTGGTCTGGTTTGAGTTT+CGG - chr5_4:48910303-48910322 Msa0855570:intron 45.0%
CAAAAACTGCCAGAAACACG+CGG + chr5_4:48910369-48910388 None:intergenic 45.0%
!!! TTCTGGCAGTTTTTGGCCAT+TGG - chr5_4:48910374-48910393 Msa0855570:intron 45.0%
!! TTTTTGGCCATTGGCTGTTG+CGG - chr5_4:48910383-48910402 Msa0855570:intron 45.0%
TGTTGCGGTTTCCTTTCCTT+CGG - chr5_4:48910398-48910417 Msa0855570:intron 45.0%
! GCATCGTTTCCAGAGAGTTT+TGG + chr5_4:48910680-48910699 None:intergenic 45.0%
CCAAGGACAGCACAAATGAT+AGG + chr5_4:48910744-48910763 None:intergenic 45.0%
CCTATCATTTGTGCTGTCCT+TGG - chr5_4:48910741-48910760 Msa0855570:intron 45.0%
! TTTTTATGCCGGCACTACTG+GGG - chr5_4:48910936-48910955 Msa0855570:intron 45.0%
!! ACCATAGCCTCTTGATGATG+AGG - chr5_4:48911039-48911058 Msa0855570:intron 45.0%
ACCTCATCATCAAGAGGCTA+TGG + chr5_4:48911043-48911062 None:intergenic 45.0%
AATTGACGACTACACTCTGC+AGG + chr5_4:48911289-48911308 None:intergenic 45.0%
GAGTGTAGTCGTCAATTCAC+AGG - chr5_4:48911292-48911311 Msa0855570:intron 45.0%
CAGATGTCTCATTGCAGACT+TGG - chr5_4:48911339-48911358 Msa0855570:CDS 45.0%
GTATGGGTGCAAATACGGTT+TGG + chr5_4:48911580-48911599 None:intergenic 45.0%
ACCGTATTTGCACCCATACT+TGG - chr5_4:48911581-48911600 Msa0855570:CDS 45.0%
CCCAAGTATGGGTGCAAATA+CGG + chr5_4:48911585-48911604 None:intergenic 45.0%
CCGTATTTGCACCCATACTT+GGG - chr5_4:48911582-48911601 Msa0855570:CDS 45.0%
CGCAGCATATATCCCAAGTA+TGG + chr5_4:48911597-48911616 None:intergenic 45.0%
!! ATATGTTAAAAATAATTAAT+TGG - chr5_4:48908622-48908641 Msa0855570:three_prime_UTR 5.0%
GCGAGCTTTGCCAACTTGAA+AGG + chr5_4:48908201-48908220 None:intergenic 50.0%
CTTCCACAGCCAAACCAAAC+AGG - chr5_4:48908437-48908456 Msa0855570:three_prime_UTR 50.0%
!!! TGAGAAGGCTTTTGACTCGG+TGG - chr5_4:48909067-48909086 Msa0855570:intron 50.0%
!!! GAGAAGGCTTTTGACTCGGT+GGG - chr5_4:48909068-48909087 Msa0855570:intron 50.0%
!! TTGTTGGAAGGAGGTGTTGG+TGG - chr5_4:48909224-48909243 Msa0855570:intron 50.0%
!! GCTACCGATTTGTTGGTGAG+TGG - chr5_4:48909264-48909283 Msa0855570:intron 50.0%
TTTGAGCTAGCCATCCCTCT+AGG + chr5_4:48909338-48909357 None:intergenic 50.0%
GGAGGCGAGATTTCTTCGTA+TGG - chr5_4:48909539-48909558 Msa0855570:intron 50.0%
! TAGGTGGACTTGGAAGTTGG+AGG - chr5_4:48909627-48909646 Msa0855570:intron 50.0%
AAGGGAGGACAATCGTACGA+AGG - chr5_4:48909712-48909731 Msa0855570:intron 50.0%
GGGAGGAGGGTCAATGAATA+AGG - chr5_4:48909982-48910001 Msa0855570:intron 50.0%
!! TGATTTGGTACGCGGCGATT+TGG - chr5_4:48910027-48910046 Msa0855570:intron 50.0%
! ACGAATGGACTTGGAACCCA+AGG - chr5_4:48910171-48910190 Msa0855570:intron 50.0%
! CGAATGGACTTGGAACCCAA+GGG - chr5_4:48910172-48910191 Msa0855570:intron 50.0%
AGCAGACAACACTGAACCGA+AGG + chr5_4:48910247-48910266 None:intergenic 50.0%
!!! CTGCTGTGCTGCTGGTTTTT+TGG - chr5_4:48910262-48910281 Msa0855570:intron 50.0%
! GCTGGTCTGGTTTGAGTTTC+GGG - chr5_4:48910304-48910323 Msa0855570:intron 50.0%
! CTGGTCTGGTTTGAGTTTCG+GGG - chr5_4:48910305-48910324 Msa0855570:intron 50.0%
! TGGTCTGGTTTGAGTTTCGG+GGG - chr5_4:48910306-48910325 Msa0855570:intron 50.0%
CATTACTGACCGCGTGTTTC+TGG - chr5_4:48910357-48910376 Msa0855570:intron 50.0%
!!! CGCGTGTTTCTGGCAGTTTT+TGG - chr5_4:48910367-48910386 Msa0855570:intron 50.0%
AAGGAAACCGCAACAGCCAA+TGG + chr5_4:48910393-48910412 None:intergenic 50.0%
GTTGCGGTTTCCTTTCCTTC+GGG - chr5_4:48910399-48910418 Msa0855570:intron 50.0%
TTGCGGTTTCCTTTCCTTCG+GGG - chr5_4:48910400-48910419 Msa0855570:intron 50.0%
! CTCTGAGTTCTAGCGGTTGT+GGG - chr5_4:48910426-48910445 Msa0855570:intron 50.0%
! TCTGAGTTCTAGCGGTTGTG+GGG - chr5_4:48910427-48910446 Msa0855570:intron 50.0%
! TGTGTTTGGTGAGTGCAGAG+AGG - chr5_4:48910651-48910670 Msa0855570:intron 50.0%
! GTGTTTGGTGAGTGCAGAGA+GGG - chr5_4:48910652-48910671 Msa0855570:intron 50.0%
TACTTCGTAGGCTATGCCAC+AGG - chr5_4:48910792-48910811 Msa0855570:intron 50.0%
GAACCTTGGCCATGTACTAG+TGG - chr5_4:48911393-48911412 Msa0855570:CDS 50.0%
TGACCACTAGTACATGGCCA+AGG + chr5_4:48911399-48911418 None:intergenic 50.0%
!! TGCCCTGTTTGGTTTGGCTG+TGG + chr5_4:48908443-48908462 None:intergenic 55.0%
TGACCAACCTCCTAGCTAGG+AGG - chr5_4:48908902-48908921 Msa0855570:CDS 55.0%
CAACCTCCTAGCTAGGAGGT+TGG + chr5_4:48908906-48908925 None:intergenic 55.0%
CAACCTCCTAGCTAGGAGGT+TGG - chr5_4:48908906-48908925 Msa0855570:CDS 55.0%
TTGCCAACCTCCTAGCTAGG+AGG + chr5_4:48908912-48908931 None:intergenic 55.0%
CACTTGCCAACCTCCTAGCT+AGG + chr5_4:48908915-48908934 None:intergenic 55.0%
AGCTAGGAGGTTGGCAAGTG+TGG - chr5_4:48908915-48908934 Msa0855570:CDS 55.0%
AACGTTGGTCGATGGGGTGA+TGG - chr5_4:48908984-48909003 Msa0855570:CDS 55.0%
!!! AGGCTTTTGACTCGGTGGGT+TGG - chr5_4:48909072-48909091 Msa0855570:intron 55.0%
!!! CTTTTGACTCGGTGGGTTGG+AGG - chr5_4:48909075-48909094 Msa0855570:intron 55.0%
!!! CTCGGTGGGTTGGAGGTTTT+TGG - chr5_4:48909082-48909101 Msa0855570:intron 55.0%
TGCGGTTGAGTGTGTGTGTG+TGG - chr5_4:48909131-48909150 Msa0855570:intron 55.0%
GCGGTTGAGTGTGTGTGTGT+GGG - chr5_4:48909132-48909151 Msa0855570:intron 55.0%
CGGTTGAGTGTGTGTGTGTG+GGG - chr5_4:48909133-48909152 Msa0855570:intron 55.0%
TTGAGTGTGTGTGTGTGGGG+AGG - chr5_4:48909136-48909155 Msa0855570:intron 55.0%
TGAGTGTGTGTGTGTGGGGA+GGG - chr5_4:48909137-48909156 Msa0855570:intron 55.0%
ATGGTTCAAATGGGGGAGGG+TGG - chr5_4:48909506-48909525 Msa0855570:intron 55.0%
TGGTTCAAATGGGGGAGGGT+GGG - chr5_4:48909507-48909526 Msa0855570:intron 55.0%
!! ATTGGGAGTGTTGGGGAGGA+GGG - chr5_4:48909969-48909988 Msa0855570:intron 55.0%
GATTGCGCGCTAAGGGAGTT+TGG - chr5_4:48910194-48910213 Msa0855570:intron 55.0%
AACACTGAACCGAAGGCAGC+AGG + chr5_4:48910240-48910259 None:intergenic 55.0%
AGTGTTGTCTGCTGTGCTGC+TGG - chr5_4:48910254-48910273 Msa0855570:intron 55.0%
! GGTCTGGTTTGAGTTTCGGG+GGG - chr5_4:48910307-48910326 Msa0855570:intron 55.0%
! GCTCTGAGTTCTAGCGGTTG+TGG - chr5_4:48910425-48910444 Msa0855570:intron 55.0%
! CTGAGTTCTAGCGGTTGTGG+GGG - chr5_4:48910428-48910447 Msa0855570:intron 55.0%
!! GAGAGGGCACCAAAACTCTC+TGG - chr5_4:48910668-48910687 Msa0855570:intron 55.0%
CCGAGTTTCAGACGGTTCTC+GGG + chr5_4:48910822-48910841 None:intergenic 55.0%
! CCCGAGAACCGTCTGAAACT+CGG - chr5_4:48910819-48910838 Msa0855570:intron 55.0%
CCCGAGTTTCAGACGGTTCT+CGG + chr5_4:48910823-48910842 None:intergenic 55.0%
! CCGAGAACCGTCTGAAACTC+GGG - chr5_4:48910820-48910839 Msa0855570:intron 55.0%
ACCATAAGCCCCAGTAGTGC+CGG + chr5_4:48910947-48910966 None:intergenic 55.0%
TGGGGACAGCCTCATTGCCA+TGG + chr5_4:48908777-48908796 None:intergenic 60.0%
!! GGCTGTCCCCATAGCCTTGT+TGG - chr5_4:48908786-48908805 Msa0855570:intron 60.0%
GAGTGTGTGTGTGTGGGGAG+GGG - chr5_4:48909138-48909157 Msa0855570:intron 60.0%
AGTGTGTGTGTGTGGGGAGG+GGG - chr5_4:48909139-48909158 Msa0855570:intron 60.0%
!! TGGGTTTTTGGAGGGTGGCG+TGG - chr5_4:48909406-48909425 Msa0855570:intron 60.0%
!! TTTTGGAGGGTGGCGTGGAG+AGG - chr5_4:48909411-48909430 Msa0855570:intron 60.0%
GGTTCAAATGGGGGAGGGTG+GGG - chr5_4:48909508-48909527 Msa0855570:intron 60.0%
GTTCAAATGGGGGAGGGTGG+GGG - chr5_4:48909509-48909528 Msa0855570:intron 60.0%
! GAGGGTGGGGGTTTTCTTGG+AGG - chr5_4:48909521-48909540 Msa0855570:intron 60.0%
!! GTCCATTGGGAGTGTTGGGG+AGG - chr5_4:48909965-48909984 Msa0855570:intron 60.0%
CTCCTCCCCAACACTCCCAA+TGG + chr5_4:48909970-48909989 None:intergenic 60.0%
!! CATTGGGAGTGTTGGGGAGG+AGG - chr5_4:48909968-48909987 Msa0855570:intron 60.0%
!! CGCGGCGTTGGATTTTGGGA+AGG - chr5_4:48910123-48910142 Msa0855570:intron 60.0%
ACCCAAGGGATTGCGCGCTA+AGG - chr5_4:48910186-48910205 Msa0855570:intron 60.0%
CCCTTAGCGCGCAATCCCTT+GGG + chr5_4:48910190-48910209 None:intergenic 60.0%
CCCAAGGGATTGCGCGCTAA+GGG - chr5_4:48910187-48910206 Msa0855570:intron 60.0%
TCCCTTAGCGCGCAATCCCT+TGG + chr5_4:48910191-48910210 None:intergenic 60.0%
! GGTTTGAGTTTCGGGGGGAC+TGG - chr5_4:48910312-48910331 Msa0855570:intron 60.0%
TCAGAGCTGCCCCGAAGGAA+AGG + chr5_4:48910412-48910431 None:intergenic 60.0%
AGAACTCAGAGCTGCCCCGA+AGG + chr5_4:48910417-48910436 None:intergenic 60.0%
!! GGGGCAGCTCTGAGTTCTAG+CGG - chr5_4:48910419-48910438 Msa0855570:intron 60.0%
! AGTTCTAGCGGTTGTGGGGG+TGG - chr5_4:48910431-48910450 Msa0855570:intron 60.0%
GTTCTAGCGGTTGTGGGGGT+GGG - chr5_4:48910432-48910451 Msa0855570:intron 60.0%
!! CGGTTGTGGGGGTGGGTTTT+TGG - chr5_4:48910439-48910458 Msa0855570:intron 60.0%
ACGGTTCTCGGGTTTGCCTG+TGG + chr5_4:48910811-48910830 None:intergenic 60.0%
GTGTGTGTGTGTGGGGAGGG+GGG - chr5_4:48909140-48909159 Msa0855570:intron 65.0%
GAGGGTGGCGTGGAGAGGAA+TGG - chr5_4:48909416-48909435 Msa0855570:intron 65.0%
! GGGGAGGGTGGGGGTTTTCT+TGG - chr5_4:48909518-48909537 Msa0855570:intron 65.0%
GAGGTTGGGCCTGCTGCCTT+CGG - chr5_4:48910228-48910247 Msa0855570:intron 65.0%
TTGCGCACAGGCTGTGCTGC+TGG - chr5_4:48910286-48910305 Msa0855570:intron 65.0%
! CACAGGCTGTGCTGCTGGTC+TGG - chr5_4:48910291-48910310 Msa0855570:intron 65.0%
GCCGGCACTACTGGGGCTTA+TGG - chr5_4:48910943-48910962 Msa0855570:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 48908001 48911723 48908001 ID=Msa0855570;Name=Msa0855570
chr5_4 mRNA 48908001 48911723 48908001 ID=Msa0855570-mRNA-1;Parent=Msa0855570;Name=Msa0855570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=109|0.66|0.75|1|1|1|4|705|167
chr5_4 exon 48908001 48908793 48908001 ID=Msa0855570-mRNA-1:exon:15483;Parent=Msa0855570-mRNA-1
chr5_4 exon 48908883 48909055 48908883 ID=Msa0855570-mRNA-1:exon:15482;Parent=Msa0855570-mRNA-1
chr5_4 exon 48911331 48911457 48911331 ID=Msa0855570-mRNA-1:exon:15481;Parent=Msa0855570-mRNA-1
chr5_4 exon 48911499 48911723 48911499 ID=Msa0855570-mRNA-1:exon:15480;Parent=Msa0855570-mRNA-1
chr5_4 five_prime_UTR 48911615 48911723 48911615 ID=Msa0855570-mRNA-1:five_prime_utr;Parent=Msa0855570-mRNA-1
chr5_4 CDS 48911499 48911614 48911499 ID=Msa0855570-mRNA-1:cds;Parent=Msa0855570-mRNA-1
chr5_4 CDS 48911331 48911457 48911331 ID=Msa0855570-mRNA-1:cds;Parent=Msa0855570-mRNA-1
chr5_4 CDS 48908883 48909055 48908883 ID=Msa0855570-mRNA-1:cds;Parent=Msa0855570-mRNA-1
chr5_4 CDS 48908706 48908793 48908706 ID=Msa0855570-mRNA-1:cds;Parent=Msa0855570-mRNA-1
chr5_4 three_prime_UTR 48908001 48908705 48908001 ID=Msa0855570-mRNA-1:three_prime_utr;Parent=Msa0855570-mRNA-1
Gene Sequence

>Msa0855570

ATGGCGACACTGGTAGAATTGTTACCAAAGGAATATGGCTTTGTGGCAATCGTTCTCGTTCTCTACACCTTCCTCAATTTCTTCATGACCTTTCAAGTTGGCAAAGCTCGCAAGAAATGTAAGTTTTGTGATTTTGTTTACAAGGTGTTTGTTGAAATTCCTCACAGGTACAAAGTTTTTTATCCAACCCTTTATGCTTCTGAATCTGAAAACAAAGATGCCAAGCTCTTCAATTGCGTTCAGAGAGGGCACCAAAACTCTCTGGAAACGATGCCCATTTTCTTCATGTTGATGATTTTGGGAGGGCTGAAGCATCCTATCATTTGTGCTGTCCTTGGAGTACTTTACACTGTTGCTAGATACTTCTACTTCGTAGGCTATGCCACAGGCAAACCCGAGAACCGTCTGAAACTCGGGGGATTTTTTATGCCGGCACTACTGGGGCTTATGGTGTCTACACTTTCATTTGGATGGAGTCTTGTCAATCAGCCTGCAAACCAGTGA
Protein sequence

>Msa0855570

MATLVELLPKEYGFVAIVLVLYTFLNFFMTFQVGKARKKCKFCDFVYKVFVEIPHRYKVFYPTLYASESENKDAKLFNCVQRGHQNSLETMPIFFMLMILGGLKHPIICAVLGVLYTVARYFYFVGYATGKPENRLKLGGFFMPALLGLMVSTLSFGWSLVNQPANQ*