AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0816270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816270 MtrunA17_Chr5g0434811 94.444 594 27 2 18 609 18 607 0.0 1118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816270 AT2G17250.1 57.986 576 229 6 12 581 8 576 0.0 668

Find 143 sgRNAs with CRISPR-Local

Find 527 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATTATTGTTACGTTTCT+TGG 0.096967 5_3:-50490230 None:intergenic
ACAAATTAGTAGTATTAATT+AGG 0.097140 5_3:-50496427 None:intergenic
AATGGTCAAGGCCTGATTTC+TGG 0.177335 5_3:-50494830 None:intergenic
CTTCATCTTCTTCGCAATTC+TGG 0.241906 5_3:-50490466 None:intergenic
TTGGAGGGAAAAGATGTTTC+AGG 0.244460 5_3:+50489095 Msa0816270:CDS
TTGCTTTCAGTTCCACCTTC+TGG 0.244476 5_3:+50493245 Msa0816270:CDS
AGAAAAGCTCACAAGAAATT+TGG 0.246404 5_3:+50489076 Msa0816270:CDS
CAAATTAGTAGTATTAATTA+GGG 0.252601 5_3:-50496426 None:intergenic
CTTGAGCAGGAAGCTCTCTT+TGG 0.255727 5_3:+50495310 Msa0816270:intron
TTTAGGTTTGCTTTGTCTCT+TGG 0.268396 5_3:+50495496 Msa0816270:intron
CAGATTCCTCAATGTTAAAA+TGG 0.289979 5_3:-50494848 None:intergenic
GAACGGGGCTAAAGATTTAT+TGG 0.290532 5_3:+50496129 Msa0816270:CDS
AAGCTTGGATTGCGTATCTT+AGG 0.300738 5_3:+50490502 Msa0816270:CDS
CCAATCCATGCTGGGTCATT+AGG 0.303403 5_3:-50492063 None:intergenic
TTAGGTTTGCTTTGTCTCTT+GGG 0.321498 5_3:+50495497 Msa0816270:intron
ATTAGTTCCATCTATCTTCA+TGG 0.328121 5_3:+50492120 Msa0816270:CDS
TGAGCTTAATTGACTTTCAT+TGG 0.332356 5_3:-50489284 None:intergenic
GGTTCTTATGCAACAATACT+TGG 0.336089 5_3:+50495577 Msa0816270:CDS
TGAATGCGATGAAACTATTA+AGG 0.339514 5_3:+50488209 Msa0816270:CDS
GAAGGGAGTTGAGGGAGGAG+AGG 0.348058 5_3:-50488063 None:intergenic
GTGGTGGTTGCGGTGGCGGA+AGG 0.353194 5_3:-50488081 None:intergenic
CTGCAGATACTTGAGATATA+TGG 0.357343 5_3:+50496332 Msa0816270:three_prime_UTR
ATGTGGTGAGGTGGAGAAGA+AGG 0.362280 5_3:-50488003 None:intergenic
GCTGGTGGTGGTTGCGGTGG+CGG 0.371522 5_3:-50488085 None:intergenic
TCAGTGATGCTGTGTTGTTT+TGG 0.385668 5_3:-50487901 None:intergenic
ACCCCTTCTTCCAGCTTACC+TGG 0.387473 5_3:+50493190 Msa0816270:CDS
TGCATTGGTTATTACAGCTC+TGG 0.389369 5_3:+50493268 Msa0816270:CDS
TATTAATTAGGGGTATGTTT+AGG 0.389918 5_3:-50496415 None:intergenic
GCTGGGTCATTAGGATATAA+AGG 0.391038 5_3:-50492054 None:intergenic
AAAACAAGCGAAGTTAATAT+TGG 0.391828 5_3:+50495541 Msa0816270:CDS
TTGAGCAGGAAGCTCTCTTT+GGG 0.394155 5_3:+50495311 Msa0816270:intron
CTGGAAGAAGGGGTGACTTT+AGG 0.399170 5_3:-50493181 None:intergenic
TGTGGTGAGGTGGAGAAGAA+GGG 0.400686 5_3:-50488002 None:intergenic
GAGTTTGTTAAGGTTGCTAA+TGG 0.401292 5_3:+50488255 Msa0816270:CDS
CGAAGAGACTGCTTCTAACT+TGG 0.405411 5_3:+50494779 Msa0816270:CDS
GAGATGAATGTGAGGAGGAG+AGG 0.410717 5_3:-50487979 None:intergenic
AGATGAATGTGAGGAGGAGA+GGG 0.412733 5_3:-50487978 None:intergenic
AAGGGAGTTGAGGGAGGAGA+GGG 0.413318 5_3:-50488062 None:intergenic
CGATCAACTGTTTGGTGCAC+CGG 0.416098 5_3:+50493318 Msa0816270:CDS
GCAAAGCTCTGCCAGAAATC+AGG 0.417403 5_3:+50494819 Msa0816270:CDS
TTAGAAATGTGGAGTGTATC+AGG 0.418848 5_3:+50489729 Msa0816270:CDS
CCACGTGAGGTAAATGAATT+CGG 0.420969 5_3:-50488130 None:intergenic
GGAGGAGCTGGTGGTGGTTG+CGG 0.422441 5_3:-50488091 None:intergenic
GTGAAATTAAAATGTTTGTT+TGG 0.426506 5_3:+50496223 Msa0816270:three_prime_UTR
TCATCGACAATAATGAGAAC+GGG 0.429049 5_3:+50496113 Msa0816270:CDS
TCTTAGGTTGCCACTTCCAT+TGG 0.431065 5_3:+50490518 Msa0816270:CDS
TACTTTGATGGAGTTTGTTA+AGG 0.432512 5_3:+50488245 Msa0816270:CDS
AGTTGTGCTTGATACTTTGA+TGG 0.436883 5_3:+50488233 Msa0816270:CDS
AGTTCCACCTTCTGGTGCAT+TGG 0.437968 5_3:+50493253 Msa0816270:CDS
ACATCCTTCGATCAACTGTT+TGG 0.439932 5_3:+50493310 Msa0816270:CDS
AGGGAGGAGAGGGAGGAAGA+AGG 0.440748 5_3:-50488052 None:intergenic
GGAGTTGAGGGAGGAGAGGG+AGG 0.440858 5_3:-50488059 None:intergenic
AGTTAAAATTTACTAAAGCT+TGG 0.442017 5_3:+50490487 Msa0816270:CDS
CTCATAGCGCCTGACTTCAT+AGG 0.448545 5_3:-50494873 None:intergenic
AATGAGGCAGCCAGGTAAGC+TGG 0.457951 5_3:-50493200 None:intergenic
TGGTGGTTGCGGTGGCGGAA+GGG 0.462845 5_3:-50488080 None:intergenic
CGGTGGCGGAAGGGAGTTGA+GGG 0.464726 5_3:-50488071 None:intergenic
ACCACCACCAGCTCCTCCTC+TGG 0.470797 5_3:+50488096 Msa0816270:CDS
TTTCTTCATTGCAGGTTCCA+TGG 0.470904 5_3:-50487854 None:intergenic
TTGGGTATTCCAATCCATGC+TGG 0.473646 5_3:-50492072 None:intergenic
GTTGTTGATGTGTGAGGCGG+AGG 0.482954 5_3:-50487953 None:intergenic
CCTAATGACCCAGCATGGAT+TGG 0.485238 5_3:+50492063 Msa0816270:CDS
CAGCCAGGTAAGCTGGAAGA+AGG 0.488496 5_3:-50493193 None:intergenic
AGCCAGGTAAGCTGGAAGAA+GGG 0.489279 5_3:-50493192 None:intergenic
ATTTCAAGTATATTGATGTT+CGG 0.489524 5_3:+50488494 Msa0816270:CDS
GGAGAGAAGTTCTTGACCTA+GGG 0.491411 5_3:-50487932 None:intergenic
ACTCAATTTCTTTGCAAATG+AGG 0.492729 5_3:-50493216 None:intergenic
CAAAACACTTACCGTGAGAC+AGG 0.494028 5_3:-50495366 None:intergenic
GAAGAGAGAGAATCGATTCG+AGG 0.495834 5_3:-50488026 None:intergenic
GTGGTGAGGTGGAGAAGAAG+GGG 0.502021 5_3:-50488001 None:intergenic
TGAATGTGAGGAGGAGAGGG+AGG 0.502763 5_3:-50487975 None:intergenic
GAATCTGATCCTATGAAGTC+AGG 0.505902 5_3:+50494864 Msa0816270:CDS
TTGACAAGGTCGTATGATGT+AGG 0.506754 5_3:+50492001 Msa0816270:CDS
TTCTCTGAAAAGAGAGAGGA+TGG 0.507254 5_3:-50496043 None:intergenic
GTAAATGAATTCGGATTGAT+CGG 0.509695 5_3:-50488121 None:intergenic
GATTACACGGAGGGTGAAGC+AGG 0.509973 5_3:+50495994 Msa0816270:intron
TCTTTGCAAATGAGGCAGCC+AGG 0.517329 5_3:-50493208 None:intergenic
ATCGGAACCAGAGGAGGAGC+TGG 0.519725 5_3:-50488103 None:intergenic
GGAGCTGGTGGTGGTTGCGG+TGG 0.521533 5_3:-50488088 None:intergenic
TGGGTATTCCAATCCATGCT+GGG 0.522547 5_3:-50492071 None:intergenic
AATAATAACTTACAATACTA+CGG 0.526362 5_3:-50488314 None:intergenic
AGGAGAGAAGTTCTTGACCT+AGG 0.526973 5_3:-50487933 None:intergenic
TTTGTTAAGGTTGCTAATGG+TGG 0.527835 5_3:+50488258 Msa0816270:CDS
AGAGAATCGATTCGAGGATG+TGG 0.533005 5_3:-50488020 None:intergenic
ACCAGAGGAGGAGCTGGTGG+TGG 0.535853 5_3:-50488097 None:intergenic
AAGAAGGGGAGATGAATGTG+AGG 0.536341 5_3:-50487987 None:intergenic
CCGAATTCATTTACCTCACG+TGG 0.537243 5_3:+50488130 Msa0816270:CDS
GCGGTGGCGGAAGGGAGTTG+AGG 0.538128 5_3:-50488072 None:intergenic
GATAAAACTGCAAGCGCAGA+TGG 0.542599 5_3:+50489259 Msa0816270:CDS
ATCACTTATCGATTGTCTTG+TGG 0.543229 5_3:+50488182 Msa0816270:CDS
ATGAAAGTCAATTAAGCTCA+AGG 0.545065 5_3:+50489287 Msa0816270:CDS
GAGGAATCACTGCTTGGTGA+AGG 0.547446 5_3:-50491865 None:intergenic
GGCTAAAGATTTATTGGACC+AGG 0.548798 5_3:+50496135 Msa0816270:CDS
ACCTCTTTGAACACATCCAA+TGG 0.549353 5_3:-50490534 None:intergenic
GATCAACTGTTTGGTGCACC+GGG 0.550891 5_3:+50493319 Msa0816270:CDS
AAAGCTCACAAGAAATTTGG+AGG 0.555352 5_3:+50489079 Msa0816270:CDS
TTGAACACATCCAATGGAAG+TGG 0.555934 5_3:-50490528 None:intergenic
GCCAGGTAAGCTGGAAGAAG+GGG 0.560855 5_3:-50493191 None:intergenic
TCCATTGGATGTGTTCAAAG+AGG 0.564996 5_3:+50490533 Msa0816270:CDS
GGTGTTTACCATAACATGAT+GGG 0.565453 5_3:-50491899 None:intergenic
ATATGGTGTAGTACATATTG+TGG 0.566500 5_3:-50489665 None:intergenic
AAGGGGAGATGAATGTGAGG+AGG 0.575380 5_3:-50487984 None:intergenic
AGGGAGGTTGTTGATGTGTG+AGG 0.576196 5_3:-50487959 None:intergenic
TTGCACCATTGCAGATTACA+CGG 0.577570 5_3:+50495981 Msa0816270:intron
TGGCGGAAGGGAGTTGAGGG+AGG 0.579360 5_3:-50488068 None:intergenic
CCTCAATGTTAAAATGGTCA+AGG 0.580409 5_3:-50494842 None:intergenic
AACTTGGATAATGCTCAGAA+TGG 0.586561 5_3:+50494795 Msa0816270:CDS
AGACAGGAGGACAGTAGTGG+TGG 0.591867 5_3:-50495350 None:intergenic
ACAGATGAGGAATCACTGCT+TGG 0.595439 5_3:-50491871 None:intergenic
GATTCGAGGATGTGGTGAGG+TGG 0.595441 5_3:-50488012 None:intergenic
TCATGGCAAAACATCGTGCA+AGG 0.595702 5_3:+50492137 Msa0816270:CDS
ACCATTGCAGATTACACGGA+GGG 0.596485 5_3:+50495985 Msa0816270:intron
TTATGCAACAATACTTGGAG+CGG 0.603488 5_3:+50495582 Msa0816270:CDS
TTCGGATTGATCGGAACCAG+AGG 0.606360 5_3:-50488112 None:intergenic
TATATCCTAATGACCCAGCA+TGG 0.606697 5_3:+50492058 Msa0816270:CDS
GAGGTTGTTGATGTGTGAGG+CGG 0.608742 5_3:-50487956 None:intergenic
TGCAACAATACTTGGAGCGG+AGG 0.610817 5_3:+50495585 Msa0816270:CDS
ACTTATCGATTGTCTTGTGG+CGG 0.611390 5_3:+50488185 Msa0816270:CDS
ATCATCGACAATAATGAGAA+CGG 0.612651 5_3:+50496112 Msa0816270:CDS
ATCATTCTCTGAAAAGAGAG+AGG 0.615510 5_3:-50496047 None:intergenic
ATAACCAATGCACCAGAAGG+TGG 0.616650 5_3:-50493257 None:intergenic
TGCACCAAACAGTTGATCGA+AGG 0.618010 5_3:-50493314 None:intergenic
CATATTGTGGATGATGCACT+CGG 0.624795 5_3:-50489652 None:intergenic
ATACATCTGATTTAGAAATG+TGG 0.629117 5_3:+50489718 Msa0816270:CDS
ACTACTGTCCTCCTGTCTCA+CGG 0.630327 5_3:+50495355 Msa0816270:CDS
ATCACTGAAATCAAAACCCT+AGG 0.631706 5_3:+50487916 Msa0816270:CDS
GTAATAACCAATGCACCAGA+AGG 0.635450 5_3:-50493260 None:intergenic
AAGCTCACAAGAAATTTGGA+GGG 0.638699 5_3:+50489080 Msa0816270:CDS
GGAACCAGAGGAGGAGCTGG+TGG 0.642590 5_3:-50488100 None:intergenic
ATCGATTCGAGGATGTGGTG+AGG 0.646651 5_3:-50488015 None:intergenic
GTGAGACAGGAGGACAGTAG+TGG 0.650028 5_3:-50495353 None:intergenic
CATTTGCAAAGAAATTGAGT+AGG 0.655411 5_3:+50493219 Msa0816270:CDS
GAAACTCGTCGAACTTCGAA+CGG 0.658319 5_3:-50488155 None:intergenic
ACTTCGAACGGAGCCACGTG+AGG 0.663920 5_3:-50488143 None:intergenic
TGTGCAGTGATTTCTTGACA+AGG 0.666059 5_3:+50491987 Msa0816270:intron
GGATTGATCGGAACCAGAGG+AGG 0.668743 5_3:-50488109 None:intergenic
AGGTGGTGTAGTCAGCGTGA+TGG 0.671351 5_3:+50492021 Msa0816270:CDS
AACACTTACCGTGAGACAGG+AGG 0.675774 5_3:-50495363 None:intergenic
CATCGACAATAATGAGAACG+GGG 0.677716 5_3:+50496114 Msa0816270:CDS
ACAAGGTCGTATGATGTAGG+TGG 0.691770 5_3:+50492004 Msa0816270:CDS
ATGATGGGATTAGACAGATG+AGG 0.697642 5_3:-50491884 None:intergenic
AAATTAGTAGTATTAATTAG+GGG 0.699771 5_3:-50496425 None:intergenic
CACCATTGCAGATTACACGG+AGG 0.732506 5_3:+50495984 Msa0816270:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATATTTCATAATCAAT+TGG + chr5_3:50489794-50489813 Msa0816270:intron 10.0%
!!! TACATTTATATTTTGTAATT+TGG + chr5_3:50490136-50490155 Msa0816270:intron 10.0%
!!! TTTTTTTTTTAATTACAAAG+AGG + chr5_3:50491576-50491595 Msa0816270:intron 10.0%
!!! TTTTTTTTTAATTACAAAGA+GGG + chr5_3:50491577-50491596 Msa0816270:intron 10.0%
!! TTATATAAAATTGAACTTAA+GGG - chr5_3:50491615-50491634 None:intergenic 10.0%
!! ATTATATAAAATTGAACTTA+AGG - chr5_3:50491616-50491635 None:intergenic 10.0%
!! AAAGATAAAAAATTTCTATT+TGG + chr5_3:50492692-50492711 Msa0816270:intron 10.0%
!! GTTTCTAATTTATATAAAAT+TGG + chr5_3:50495718-50495737 Msa0816270:intron 10.0%
!!! TATATTTTTTATTTTTCTGT+TGG + chr5_3:50496261-50496280 Msa0816270:three_prime_UTR 10.0%
!!! ATATTTTTTATTTTTCTGTT+GGG + chr5_3:50496262-50496281 Msa0816270:three_prime_UTR 10.0%
!! AATAATAACTTACAATACTA+CGG - chr5_3:50488317-50488336 None:intergenic 15.0%
!!! ATTTGTTAGTTTGATTTTAT+TGG + chr5_3:50488409-50488428 Msa0816270:intron 15.0%
!! AACTAAAAATACAAATTCTT+GGG - chr5_3:50488607-50488626 None:intergenic 15.0%
!!! TGCATTTATATTTTGTAATT+TGG + chr5_3:50490048-50490067 Msa0816270:intron 15.0%
!!! TTATTTTCAAAGATTTGTTT+AGG - chr5_3:50490818-50490837 None:intergenic 15.0%
!! AAAGATTGATTAAAAAATAC+AGG - chr5_3:50491425-50491444 None:intergenic 15.0%
!! TAAAAAAAAAATGAACTCAA+GGG - chr5_3:50491567-50491586 None:intergenic 15.0%
!! TTAAAAAAAAAATGAACTCA+AGG - chr5_3:50491568-50491587 None:intergenic 15.0%
!!! AGAGTTTTTCATAAAATTTT+GGG - chr5_3:50492093-50492112 None:intergenic 15.0%
!!! TAGAGTTTTTCATAAAATTT+TGG - chr5_3:50492094-50492113 None:intergenic 15.0%
!! AAAAATTTGCAATATAATTC+TGG + chr5_3:50494181-50494200 Msa0816270:intron 15.0%
!! TGTAAATTATATCTAAATGT+TGG - chr5_3:50494541-50494560 None:intergenic 15.0%
!!! ATATATGGTAAATTTTGTAA+GGG + chr5_3:50496347-50496366 Msa0816270:three_prime_UTR 15.0%
!! AAATTAGTAGTATTAATTAG+GGG - chr5_3:50496428-50496447 None:intergenic 15.0%
!! CAAATTAGTAGTATTAATTA+GGG - chr5_3:50496429-50496448 None:intergenic 15.0%
!! ACAAATTAGTAGTATTAATT+AGG - chr5_3:50496430-50496449 None:intergenic 15.0%
!!! ATTTCAAGTATATTGATGTT+CGG + chr5_3:50488494-50488513 Msa0816270:CDS 20.0%
!! GAACTAAAAATACAAATTCT+TGG - chr5_3:50488608-50488627 None:intergenic 20.0%
!!! TAAAAAGTGTTGTTAAATAG+AGG + chr5_3:50488831-50488850 Msa0816270:intron 20.0%
!! CACAAAACAAAACTAAAATA+GGG - chr5_3:50488959-50488978 None:intergenic 20.0%
!!! TCTTTTCAATTCCAAATATT+TGG + chr5_3:50489195-50489214 Msa0816270:intron 20.0%
!! AATGAGAATAACCAAATATT+TGG - chr5_3:50489209-50489228 None:intergenic 20.0%
!! CATAAAATATAGAACTCAAA+AGG - chr5_3:50489835-50489854 None:intergenic 20.0%
!!! CATTTTATGATCATTTTCTA+TGG - chr5_3:50490170-50490189 None:intergenic 20.0%
!! AGTTAAAATTTACTAAAGCT+TGG + chr5_3:50490487-50490506 Msa0816270:CDS 20.0%
!! TTTAGTAATATATGACACTA+TGG + chr5_3:50490653-50490672 Msa0816270:intron 20.0%
!! TAAAACAAAAAAGTCAAACT+GGG - chr5_3:50491122-50491141 None:intergenic 20.0%
!! TTAAAACAAAAAAGTCAAAC+TGG - chr5_3:50491123-50491142 None:intergenic 20.0%
!! AAGAAAGAAGAAAAGATAAA+TGG - chr5_3:50491284-50491303 None:intergenic 20.0%
!!! TTTTAATCAATCTTTATAGC+AGG + chr5_3:50491430-50491449 Msa0816270:intron 20.0%
!! ATAAAATGAATCTAGTCAAA+GGG - chr5_3:50491684-50491703 None:intergenic 20.0%
!!! AAAGTGAATTCTATTTGTTT+TGG + chr5_3:50491717-50491736 Msa0816270:intron 20.0%
!!! AAGTGAATTCTATTTGTTTT+GGG + chr5_3:50491718-50491737 Msa0816270:intron 20.0%
!! TATGTTCTGTTTAATATGAA+TGG + chr5_3:50491769-50491788 Msa0816270:intron 20.0%
!! AAGAAAATGCAAAATCAAAA+GGG - chr5_3:50491825-50491844 None:intergenic 20.0%
!! AAAGAAAATGCAAAATCAAA+AGG - chr5_3:50491826-50491845 None:intergenic 20.0%
!!! TTTGCATTTTCTTTTTTACT+AGG + chr5_3:50491832-50491851 Msa0816270:intron 20.0%
!!! CAGAAATTGACATTTTATTA+TGG + chr5_3:50491929-50491948 Msa0816270:intron 20.0%
!! ATGCTGCAAAATTAATTTAT+CGG + chr5_3:50492616-50492635 Msa0816270:intron 20.0%
!!! AGCATATATCATTTTCTAAA+TGG - chr5_3:50493506-50493525 None:intergenic 20.0%
!!! ACTTTTCTATTCATCTTATT+CGG + chr5_3:50493539-50493558 Msa0816270:intron 20.0%
!!! TTATATTGCAAATTTTTGTC+TGG - chr5_3:50494178-50494197 None:intergenic 20.0%
!!! GAAAGATTTGTTAACTTAAA+TGG + chr5_3:50494358-50494377 Msa0816270:intron 20.0%
!! ACAATACATGTAAAACTAAA+TGG - chr5_3:50495070-50495089 None:intergenic 20.0%
!! CATGTATTGTTAATGTTATA+TGG + chr5_3:50495080-50495099 Msa0816270:intron 20.0%
!! AAGATTAAATACAACAATGA+AGG - chr5_3:50495423-50495442 None:intergenic 20.0%
!!! GTAAAAGCATATAATGTTTA+AGG - chr5_3:50495469-50495488 None:intergenic 20.0%
!! ATTCTCTTATTATGCAAATT+TGG - chr5_3:50495661-50495680 None:intergenic 20.0%
!! AAATTTGCATAATAAGAGAA+TGG + chr5_3:50495660-50495679 Msa0816270:intron 20.0%
!!! CATTTTTGTATTTTGTATAC+TGG + chr5_3:50495831-50495850 Msa0816270:intron 20.0%
!!! AATTTTATTTTTGTCCTACA+AGG - chr5_3:50495872-50495891 None:intergenic 20.0%
!!! AACAAACATTTTAATTTCAC+AGG - chr5_3:50496223-50496242 None:intergenic 20.0%
!! GTGAAATTAAAATGTTTGTT+TGG + chr5_3:50496223-50496242 Msa0816270:three_prime_UTR 20.0%
!!! GATATATGGTAAATTTTGTA+AGG + chr5_3:50496346-50496365 Msa0816270:three_prime_UTR 20.0%
! GCACAAAACAAAACTAAAAT+AGG - chr5_3:50488960-50488979 None:intergenic 25.0%
! TCATCTTCTTCTCTTTATAA+AGG - chr5_3:50489357-50489376 None:intergenic 25.0%
!! ATACATCTAGTTTCAAAACT+AGG - chr5_3:50489569-50489588 None:intergenic 25.0%
! ATACATCTGATTTAGAAATG+TGG + chr5_3:50489718-50489737 Msa0816270:CDS 25.0%
! TACATTATTGTTACGTTTCT+TGG - chr5_3:50490233-50490252 None:intergenic 25.0%
! GAAAATTACAATGTAATCCA+AGG - chr5_3:50490319-50490338 None:intergenic 25.0%
! TATGCATAACAATGATGTAA+TGG - chr5_3:50490430-50490449 None:intergenic 25.0%
!! ATGTGTTTGAAATTTCAGTA+TGG + chr5_3:50490570-50490589 Msa0816270:intron 25.0%
! CATCAATTTCCAGAATATAA+TGG - chr5_3:50490599-50490618 None:intergenic 25.0%
!!! TTTACAGATATGCTATTTCT+AGG + chr5_3:50490688-50490707 Msa0816270:intron 25.0%
! TGTATATCTAAGTGTTTGTT+TGG + chr5_3:50490728-50490747 Msa0816270:intron 25.0%
! TAGGAAATGAAATGAAAACA+AGG - chr5_3:50490799-50490818 None:intergenic 25.0%
!! AGAGTCTTGATATAACATTT+TGG + chr5_3:50490970-50490989 Msa0816270:intron 25.0%
! AAAACAAAAAAGTCAAACTG+GGG - chr5_3:50491121-50491140 None:intergenic 25.0%
!! TATAATGAAGTATCTAGAGA+GGG - chr5_3:50491349-50491368 None:intergenic 25.0%
! TAAAATTGAACTTAAGGGAA+GGG - chr5_3:50491610-50491629 None:intergenic 25.0%
! ATAAAATTGAACTTAAGGGA+AGG - chr5_3:50491611-50491630 None:intergenic 25.0%
! CATAAAATGAATCTAGTCAA+AGG - chr5_3:50491685-50491704 None:intergenic 25.0%
!!! AGTGAATTCTATTTGTTTTG+GGG + chr5_3:50491719-50491738 Msa0816270:intron 25.0%
! AGAAAATGCAAAATCAAAAG+GGG - chr5_3:50491824-50491843 None:intergenic 25.0%
! ATACATGTAAAACTAACCAA+TGG + chr5_3:50492196-50492215 Msa0816270:intron 25.0%
! TACATGTAAAACTAACCAAT+GGG + chr5_3:50492197-50492216 Msa0816270:intron 25.0%
! TAAATGCAACATTAATATGC+CGG + chr5_3:50492295-50492314 Msa0816270:intron 25.0%
!! TTAAATCGTTTTATCCAAAC+CGG - chr5_3:50492317-50492336 None:intergenic 25.0%
!!! TTTTTTTTGCAACAATGATC+AGG + chr5_3:50492472-50492491 Msa0816270:intron 25.0%
!! CTAGATAACATTCAATGTTT+TGG - chr5_3:50493036-50493055 None:intergenic 25.0%
!!! CATTAGTAAATTTTGTTTCC+TGG + chr5_3:50493383-50493402 Msa0816270:intron 25.0%
! TACCAAACATAGATACAAAA+TGG - chr5_3:50493700-50493719 None:intergenic 25.0%
!!! TGGTTTTATATAGAACACTT+TGG + chr5_3:50493967-50493986 Msa0816270:intron 25.0%
! GTATCTATGTTTCTCAAATT+AGG + chr5_3:50494050-50494069 Msa0816270:intron 25.0%
! TTCTCAAATTAGGTTTCTAT+TGG + chr5_3:50494060-50494079 Msa0816270:intron 25.0%
! TGCAATTGAAAACTAAATAG+AGG + chr5_3:50494565-50494584 Msa0816270:intron 25.0%
! TTATTATCCCTAATCAAGTT+GGG + chr5_3:50494594-50494613 Msa0816270:intron 25.0%
!!! AATTTCAAAATTTGTTGCTC+TGG + chr5_3:50494634-50494653 Msa0816270:intron 25.0%
! CTAATTTCTGATATTTGAAC+AGG + chr5_3:50494722-50494741 Msa0816270:intron 25.0%
! TTGTTAATGTTATATGGTCA+AGG + chr5_3:50495086-50495105 Msa0816270:intron 25.0%
! AACAAATTAAGCATGACATT+AGG + chr5_3:50495192-50495211 Msa0816270:intron 25.0%
! TAAATACAACAATGAAGGAA+AGG - chr5_3:50495418-50495437 None:intergenic 25.0%
! AAAACAAGCGAAGTTAATAT+TGG + chr5_3:50495541-50495560 Msa0816270:CDS 25.0%
! ATAAAGGACGAAAAACAAAA+TGG - chr5_3:50495618-50495637 None:intergenic 25.0%
! TATAAGGCACATTACTATAA+AGG - chr5_3:50495634-50495653 None:intergenic 25.0%
!! ATGCAAATTTGGTGAATATA+AGG - chr5_3:50495650-50495669 None:intergenic 25.0%
! CATTATTTATGTCAAATGTG+TGG - chr5_3:50495768-50495787 None:intergenic 25.0%
!! TTGAAGATCAAAATTTTCAC+CGG - chr5_3:50496306-50496325 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr5_3:50496418-50496437 None:intergenic 25.0%
AGCTTAAGAAAAAAACACCA+TGG + chr5_3:50487837-50487856 Msa0816270:exon 30.0%
GTAAATGAATTCGGATTGAT+CGG - chr5_3:50488124-50488143 None:intergenic 30.0%
TGAATGCGATGAAACTATTA+AGG + chr5_3:50488209-50488228 Msa0816270:CDS 30.0%
!! TACTTTGATGGAGTTTGTTA+AGG + chr5_3:50488245-50488264 Msa0816270:CDS 30.0%
TCGTCAATGTTGTTAAATAG+CGG + chr5_3:50488724-50488743 Msa0816270:intron 30.0%
CAGTACTAAATAGCATATCA+CGG - chr5_3:50488811-50488830 None:intergenic 30.0%
! AATTTCTTGTGAGCTTTTCT+AGG - chr5_3:50489076-50489095 None:intergenic 30.0%
AGAAAAGCTCACAAGAAATT+TGG + chr5_3:50489076-50489095 Msa0816270:CDS 30.0%
AGATTAAGAAAAGCAAGCTA+AGG - chr5_3:50489131-50489150 None:intergenic 30.0%
! TGAGCTTAATTGACTTTCAT+TGG - chr5_3:50489287-50489306 None:intergenic 30.0%
ATGAAAGTCAATTAAGCTCA+AGG + chr5_3:50489287-50489306 Msa0816270:CDS 30.0%
GCAAGAATAAAATTAACCAC+TGG - chr5_3:50489328-50489347 None:intergenic 30.0%
! AAATCATTTAAGACCAGCTA+TGG - chr5_3:50489380-50489399 None:intergenic 30.0%
! ACATCTCTAATTTTTCTGCT+AGG + chr5_3:50489533-50489552 Msa0816270:intron 30.0%
ATATGGTGTAGTACATATTG+TGG - chr5_3:50489668-50489687 None:intergenic 30.0%
!!! TATCGTCTGATTTTTCAAGA+GGG - chr5_3:50489701-50489720 None:intergenic 30.0%
!! GATCAAGTAAGAAGTATCTT+TGG + chr5_3:50489923-50489942 Msa0816270:intron 30.0%
TTTAAGTGGGATCAGTTATA+TGG - chr5_3:50489984-50490003 None:intergenic 30.0%
! AACCAAAAGCTTGTTTAAGT+GGG - chr5_3:50489997-50490016 None:intergenic 30.0%
! TAACCAAAAGCTTGTTTAAG+TGG - chr5_3:50489998-50490017 None:intergenic 30.0%
!! TGGTTATTCTTGTTGTTCTA+AGG + chr5_3:50490012-50490031 Msa0816270:intron 30.0%
!! CTTGTTGTTCTAAGGAAAAA+TGG + chr5_3:50490020-50490039 Msa0816270:intron 30.0%
AACCAAAAGCCTATTTAAGT+GGG - chr5_3:50490085-50490104 None:intergenic 30.0%
TAACCAAAAGCCTATTTAAG+TGG - chr5_3:50490086-50490105 None:intergenic 30.0%
!! TGGTTATTCTTGTTGTTCTA+AGG + chr5_3:50490012-50490031 Msa0816270:intron 30.0%
TAAAATGCTTTCTGTAGATG+TGG + chr5_3:50490183-50490202 Msa0816270:intron 30.0%
ATAAAAGGTCCTCATTAATG+GGG - chr5_3:50490296-50490315 None:intergenic 30.0%
GATAAAAGGTCCTCATTAAT+GGG - chr5_3:50490297-50490316 None:intergenic 30.0%
CAATGTAATCCAAGGATAAA+AGG - chr5_3:50490311-50490330 None:intergenic 30.0%
TACATCATTGTTATGCATAC+AGG + chr5_3:50490431-50490450 Msa0816270:intron 30.0%
ATCTAAGTGTTTGTTTGGTT+TGG + chr5_3:50490733-50490752 Msa0816270:intron 30.0%
! TCTAAGTGTTTGTTTGGTTT+GGG + chr5_3:50490734-50490753 Msa0816270:intron 30.0%
GAAATGAAATGAAAACAAGG+TGG - chr5_3:50490796-50490815 None:intergenic 30.0%
GAAATCAAGTGAAATCAATG+TGG + chr5_3:50490838-50490857 Msa0816270:intron 30.0%
GTGTAAACATGAATGAATGT+AGG + chr5_3:50490878-50490897 Msa0816270:intron 30.0%
TGTACATACGTGTATATATG+TGG + chr5_3:50490936-50490955 Msa0816270:intron 30.0%
CAAAAAGATATCCACATTTC+AGG - chr5_3:50491003-50491022 None:intergenic 30.0%
! AAATACATGATGGGGATTTA+CGG - chr5_3:50491247-50491266 None:intergenic 30.0%
CTTAGACAAAATACATGATG+GGG - chr5_3:50491255-50491274 None:intergenic 30.0%
CCTTAGACAAAATACATGAT+GGG - chr5_3:50491256-50491275 None:intergenic 30.0%
TCCTTAGACAAAATACATGA+TGG - chr5_3:50491257-50491276 None:intergenic 30.0%
! GTATAATGAAGTATCTAGAG+AGG - chr5_3:50491350-50491369 None:intergenic 30.0%
!! ATCAATTTGGTGTTATGCAA+TGG - chr5_3:50491479-50491498 None:intergenic 30.0%
!!! GTGAATTCTATTTGTTTTGG+GGG + chr5_3:50491720-50491739 Msa0816270:intron 30.0%
AAAATGCAAAATCAAAAGGG+GGG - chr5_3:50491822-50491841 None:intergenic 30.0%
GAAAATGCAAAATCAAAAGG+GGG - chr5_3:50491823-50491842 None:intergenic 30.0%
ATTAGTTCCATCTATCTTCA+TGG + chr5_3:50492120-50492139 Msa0816270:CDS 30.0%
!! GTCATTTTATAAGCTTTACC+TGG - chr5_3:50492168-50492187 None:intergenic 30.0%
ACATGTAAAACTAACCAATG+GGG + chr5_3:50492198-50492217 Msa0816270:intron 30.0%
ATAAAACGATTTAAGCATGC+TGG + chr5_3:50492323-50492342 Msa0816270:intron 30.0%
ACAACATCGTTAATATGCAA+CGG + chr5_3:50492435-50492454 Msa0816270:intron 30.0%
!!! GAAAGTGTCATGTTTTTTGT+CGG + chr5_3:50492658-50492677 Msa0816270:intron 30.0%
!!! AAAGTGTCATGTTTTTTGTC+GGG + chr5_3:50492659-50492678 Msa0816270:intron 30.0%
! CTTTTTCTGTATAGCAATAG+AGG - chr5_3:50492751-50492770 None:intergenic 30.0%
! GAAAAGAGAGGTATAATATG+GGG - chr5_3:50492945-50492964 None:intergenic 30.0%
! CGAAAAGAGAGGTATAATAT+GGG - chr5_3:50492946-50492965 None:intergenic 30.0%
! TCGAAAAGAGAGGTATAATA+TGG - chr5_3:50492947-50492966 None:intergenic 30.0%
! CTAATTCACTATTTCTTTGG+GGG - chr5_3:50492984-50493003 None:intergenic 30.0%
! CCTAATTCACTATTTCTTTG+GGG - chr5_3:50492985-50493004 None:intergenic 30.0%
! GCCTAATTCACTATTTCTTT+GGG - chr5_3:50492986-50493005 None:intergenic 30.0%
! AGCCTAATTCACTATTTCTT+TGG - chr5_3:50492987-50493006 None:intergenic 30.0%
TAATTGAGTGGTTTCTGTAA+TGG + chr5_3:50493006-50493025 Msa0816270:intron 30.0%
! GTTATCTAGTGATGATGAAA+AGG + chr5_3:50493047-50493066 Msa0816270:intron 30.0%
TGCATATTGTCAGAAAATGA+AGG - chr5_3:50493132-50493151 None:intergenic 30.0%
ACTCAATTTCTTTGCAAATG+AGG - chr5_3:50493219-50493238 None:intergenic 30.0%
CATTTGCAAAGAAATTGAGT+AGG + chr5_3:50493219-50493238 Msa0816270:CDS 30.0%
TTTCCTGGATTACTATATCT+TGG + chr5_3:50493398-50493417 Msa0816270:intron 30.0%
AAATGATATATGCTGTGTTC+AGG + chr5_3:50493512-50493531 Msa0816270:intron 30.0%
ACATTTGCATGTTTGTGATA+TGG + chr5_3:50493656-50493675 Msa0816270:intron 30.0%
!!! TGCCATTTTGTATCTATGTT+TGG + chr5_3:50493695-50493714 Msa0816270:intron 30.0%
! TCTACCATCTTTTCTACTAT+AGG - chr5_3:50493777-50493796 None:intergenic 30.0%
AAGATGGTAGAAACTAGATT+TGG + chr5_3:50493786-50493805 Msa0816270:intron 30.0%
AGATGGTAGAAACTAGATTT+GGG + chr5_3:50493787-50493806 Msa0816270:intron 30.0%
TATAGGAGAAGCTATTAAGA+AGG + chr5_3:50493914-50493933 Msa0816270:intron 30.0%
TTGCAATATAATTCTGGCAT+AGG + chr5_3:50494187-50494206 Msa0816270:intron 30.0%
TACTATGATAAGAGAAATGC+AGG + chr5_3:50494327-50494346 Msa0816270:intron 30.0%
TGTCTTTCCATATAAGAGAT+CGG - chr5_3:50494402-50494421 None:intergenic 30.0%
ATATTGTCTGATGTCACTAT+TGG + chr5_3:50494473-50494492 Msa0816270:intron 30.0%
GTTATTATCCCTAATCAAGT+TGG + chr5_3:50494593-50494612 Msa0816270:intron 30.0%
AAAAACACCCAACTTGATTA+GGG - chr5_3:50494604-50494623 None:intergenic 30.0%
TCTCCAATTAAACAGAAAGA+AGG - chr5_3:50494701-50494720 None:intergenic 30.0%
CAGATTCCTCAATGTTAAAA+TGG - chr5_3:50494851-50494870 None:intergenic 30.0%
TAGGAAAAATAACACACTTC+AGG - chr5_3:50494935-50494954 None:intergenic 30.0%
ATATACATACATATTGCGTG+AGG + chr5_3:50495025-50495044 Msa0816270:intron 30.0%
CGTCTTATAGCTTACAATAT+TGG + chr5_3:50495225-50495244 Msa0816270:intron 30.0%
CTTCATCAGCAAAACAAATA+AGG - chr5_3:50495286-50495305 None:intergenic 30.0%
! ATGCTTTTACTTGTGCTTTT+AGG + chr5_3:50495479-50495498 Msa0816270:intron 30.0%
!! AATATTGGTGATTTTAGTGC+TGG + chr5_3:50495556-50495575 Msa0816270:CDS 30.0%
! CAAATAACTTTTCTCCTTGT+AGG + chr5_3:50495855-50495874 Msa0816270:intron 30.0%
! TTTTCAGAGAATGATTTTGC+TGG + chr5_3:50496055-50496074 Msa0816270:CDS 30.0%
ATCATCGACAATAATGAGAA+CGG + chr5_3:50496112-50496131 Msa0816270:CDS 30.0%
TTTCTGTTGGGAAAGAAAAA+AGG + chr5_3:50496274-50496293 Msa0816270:three_prime_UTR 30.0%
! TGAAGATCAAAATTTTCACC+GGG - chr5_3:50496305-50496324 None:intergenic 30.0%
! TTCTTCGTTTTCTTCATTGC+AGG - chr5_3:50487865-50487884 None:intergenic 35.0%
ATCACTGAAATCAAAACCCT+AGG + chr5_3:50487916-50487935 Msa0816270:CDS 35.0%
! ATCACTTATCGATTGTCTTG+TGG + chr5_3:50488182-50488201 Msa0816270:CDS 35.0%
AGTTGTGCTTGATACTTTGA+TGG + chr5_3:50488233-50488252 Msa0816270:CDS 35.0%
!! GAGTTTGTTAAGGTTGCTAA+TGG + chr5_3:50488255-50488274 Msa0816270:CDS 35.0%
TTTGTTAAGGTTGCTAATGG+TGG + chr5_3:50488258-50488277 Msa0816270:CDS 35.0%
CTAGCGTCTAGAAAAATCAA+AGG - chr5_3:50488536-50488555 None:intergenic 35.0%
!!! TTTTTTGCTTAGCGCCTTTA+TGG + chr5_3:50488673-50488692 Msa0816270:intron 35.0%
TAAGAACTTCCCTTCCATAA+AGG - chr5_3:50488690-50488709 None:intergenic 35.0%
TTTATGGAAGGGAAGTTCTT+AGG + chr5_3:50488689-50488708 Msa0816270:intron 35.0%
TTAGTAATGCTATAGCGTAG+CGG + chr5_3:50488754-50488773 Msa0816270:intron 35.0%
AAATAGCATATCACGGATAG+CGG - chr5_3:50488804-50488823 None:intergenic 35.0%
AAAGCTCACAAGAAATTTGG+AGG + chr5_3:50489079-50489098 Msa0816270:CDS 35.0%
AAGCTCACAAGAAATTTGGA+GGG + chr5_3:50489080-50489099 Msa0816270:CDS 35.0%
!!! ATCGTCTGATTTTTCAAGAG+GGG - chr5_3:50489700-50489719 None:intergenic 35.0%
!!! GTATCGTCTGATTTTTCAAG+AGG - chr5_3:50489702-50489721 None:intergenic 35.0%
TTAGAAATGTGGAGTGTATC+AGG + chr5_3:50489729-50489748 Msa0816270:CDS 35.0%
! GCTATAAAGCTGTCACTTAT+TGG - chr5_3:50489951-50489970 None:intergenic 35.0%
! ATCCCACTTAAACAAGCTTT+TGG + chr5_3:50489992-50490011 Msa0816270:intron 35.0%
ATAGCTGATCCCACTTAAAT+AGG + chr5_3:50490073-50490092 Msa0816270:intron 35.0%
! ATCCCACTTAAATAGGCTTT+TGG + chr5_3:50490080-50490099 Msa0816270:intron 35.0%
TCATTAATGGGGAAAAAAGG+GGG - chr5_3:50490285-50490304 None:intergenic 35.0%
CTCATTAATGGGGAAAAAAG+GGG - chr5_3:50490286-50490305 None:intergenic 35.0%
CCTCATTAATGGGGAAAAAA+GGG - chr5_3:50490287-50490306 None:intergenic 35.0%
TCCTCATTAATGGGGAAAAA+AGG - chr5_3:50490288-50490307 None:intergenic 35.0%
GGATAAAAGGTCCTCATTAA+TGG - chr5_3:50490298-50490317 None:intergenic 35.0%
! TAATGAGGACCTTTTATCCT+TGG + chr5_3:50490299-50490318 Msa0816270:intron 35.0%
GTATGGTTGCCATTATATTC+TGG + chr5_3:50490587-50490606 Msa0816270:intron 35.0%
TATGTACAGTTGTATTCAGG+TGG - chr5_3:50490924-50490943 None:intergenic 35.0%
ACGTATGTACAGTTGTATTC+AGG - chr5_3:50490927-50490946 None:intergenic 35.0%
GTCAAAGTCAAATCCATTGT+TGG + chr5_3:50491056-50491075 Msa0816270:intron 35.0%
! ATCCATTGTTGGTCTATAGT+AGG + chr5_3:50491067-50491086 Msa0816270:intron 35.0%
TTCCTACTATAGACCAACAA+TGG - chr5_3:50491072-50491091 None:intergenic 35.0%
TAACCAAACATTTCTCCACT+TGG + chr5_3:50491193-50491212 Msa0816270:intron 35.0%
! CCCATCATGTATTTTGTCTA+AGG + chr5_3:50491253-50491272 Msa0816270:intron 35.0%
! ATCTAGAGAGGGTTTGTTTA+AGG - chr5_3:50491338-50491357 None:intergenic 35.0%
CACATCGCAGAAAATCAATT+TGG - chr5_3:50491492-50491511 None:intergenic 35.0%
TCAAGGGATACAATGAATCT+GGG - chr5_3:50491551-50491570 None:intergenic 35.0%
! AGGGTTCTTTGTTAGTCTAT+TGG - chr5_3:50491665-50491684 None:intergenic 35.0%
AAATGCAAAATCAAAAGGGG+GGG - chr5_3:50491821-50491840 None:intergenic 35.0%
TGTCTAATCCCATCATGTTA+TGG + chr5_3:50491891-50491910 Msa0816270:intron 35.0%
GGTGTTTACCATAACATGAT+GGG - chr5_3:50491902-50491921 None:intergenic 35.0%
AGGTGTTTACCATAACATGA+TGG - chr5_3:50491903-50491922 None:intergenic 35.0%
AATGTCAATTTCTGTAGCAC+AGG - chr5_3:50491923-50491942 None:intergenic 35.0%
! TGTTTTGCCATGAAGATAGA+TGG - chr5_3:50492130-50492149 None:intergenic 35.0%
! TTTTGCTTGATATTCCCCAT+TGG - chr5_3:50492215-50492234 None:intergenic 35.0%
TCCAACAATGCAACAAGAAT+AGG + chr5_3:50492373-50492392 Msa0816270:intron 35.0%
TCCTATTCTTGTTGCATTGT+TGG - chr5_3:50492377-50492396 None:intergenic 35.0%
! TTATTCTAGTTGGACCTGAT+TGG - chr5_3:50492514-50492533 None:intergenic 35.0%
CACAGCAGATTTATTCTAGT+TGG - chr5_3:50492524-50492543 None:intergenic 35.0%
!!! AAGTGTCATGTTTTTTGTCG+GGG + chr5_3:50492660-50492679 Msa0816270:intron 35.0%
ATTTCTATTTGGCGCATAGA+TGG + chr5_3:50492703-50492722 Msa0816270:intron 35.0%
TTATACCTCTCTTTGCTAAG+TGG + chr5_3:50492777-50492796 Msa0816270:intron 35.0%
TAACCGAGTAGTTTCTGTAA+TGG + chr5_3:50492833-50492852 Msa0816270:intron 35.0%
AACCGAGTAGTTTCTGTAAT+GGG + chr5_3:50492834-50492853 Msa0816270:intron 35.0%
TTCCCATTACAGAAACTACT+CGG - chr5_3:50492839-50492858 None:intergenic 35.0%
! AACCAAAGCCTTGTATGTTA+TGG + chr5_3:50492859-50492878 Msa0816270:intron 35.0%
TCATCACTCCATAACATACA+AGG - chr5_3:50492870-50492889 None:intergenic 35.0%
! TTATACCTCTCTTTTCGAAG+TGG + chr5_3:50492949-50492968 Msa0816270:intron 35.0%
CCCCAAAGAAATAGTGAATT+AGG + chr5_3:50492982-50493001 Msa0816270:intron 35.0%
AGTGAATTAGGCTAATTGAG+TGG + chr5_3:50492994-50493013 Msa0816270:intron 35.0%
GAAACAAGACTATCTTTACC+CGG - chr5_3:50493340-50493359 None:intergenic 35.0%
TCTCCAAGATATAGTAATCC+AGG - chr5_3:50493404-50493423 None:intergenic 35.0%
ATTACAACATTAGCGAGAGT+TGG + chr5_3:50493744-50493763 Msa0816270:intron 35.0%
TTACAACATTAGCGAGAGTT+GGG + chr5_3:50493745-50493764 Msa0816270:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG + chr5_3:50493770-50493789 Msa0816270:intron 35.0%
AAACTAGATTTGGGTGGTTT+GGG + chr5_3:50493796-50493815 Msa0816270:intron 35.0%
GGAAGACCTAGAAAAACTAT+AGG + chr5_3:50493897-50493916 Msa0816270:intron 35.0%
! GCTTCTCCTATAGTTTTTCT+AGG - chr5_3:50493906-50493925 None:intergenic 35.0%
GGATCTAGAGATTAATGAGT+TGG + chr5_3:50493935-50493954 Msa0816270:intron 35.0%
! TAATGAGTTGGAGAAAGACA+TGG + chr5_3:50493947-50493966 Msa0816270:intron 35.0%
AAACTCCACTTATTGGGTTA+AGG + chr5_3:50494010-50494029 Msa0816270:intron 35.0%
CAATATAATTCTGGCATAGG+AGG + chr5_3:50494190-50494209 Msa0816270:intron 35.0%
AGTGACATCAGACAATATGA+CGG - chr5_3:50494471-50494490 None:intergenic 35.0%
TGTTGGATTAAGCAAGATGT+TGG - chr5_3:50494524-50494543 None:intergenic 35.0%
CAAAAACACCCAACTTGATT+AGG - chr5_3:50494605-50494624 None:intergenic 35.0%
CCAATTAAACAGAAAGAAGG+CGG - chr5_3:50494698-50494717 None:intergenic 35.0%
AACTTGGATAATGCTCAGAA+TGG + chr5_3:50494795-50494814 Msa0816270:CDS 35.0%
CCTCAATGTTAAAATGGTCA+AGG - chr5_3:50494845-50494864 None:intergenic 35.0%
!! CCTTGACCATTTTAACATTG+AGG + chr5_3:50494842-50494861 Msa0816270:CDS 35.0%
AACACACTTCAGGTCATATT+GGG - chr5_3:50494925-50494944 None:intergenic 35.0%
TAACACACTTCAGGTCATAT+TGG - chr5_3:50494926-50494945 None:intergenic 35.0%
! TATTTTTCCTAAACCAGACC+AGG + chr5_3:50494944-50494963 Msa0816270:intron 35.0%
! ACAGTTTTCCAATTTTCTCC+TGG - chr5_3:50494965-50494984 None:intergenic 35.0%
!!! ACGGTAAGTGTTTTGATCTT+TGG + chr5_3:50495374-50495393 Msa0816270:intron 35.0%
CAATGAAGGAAAGGAAAACA+AGG - chr5_3:50495409-50495428 None:intergenic 35.0%
! TTTAGGTTTGCTTTGTCTCT+TGG + chr5_3:50495496-50495515 Msa0816270:intron 35.0%
! TTAGGTTTGCTTTGTCTCTT+GGG + chr5_3:50495497-50495516 Msa0816270:intron 35.0%
GGTTCTTATGCAACAATACT+TGG + chr5_3:50495577-50495596 Msa0816270:CDS 35.0%
TTATGCAACAATACTTGGAG+CGG + chr5_3:50495582-50495601 Msa0816270:CDS 35.0%
!!! TGTTTTTAGTCGTTCATCAG+TGG + chr5_3:50495788-50495807 Msa0816270:intron 35.0%
ATACTCATCCTTGTATCTTC+TGG + chr5_3:50495951-50495970 Msa0816270:intron 35.0%
!! GTTGTTTTGTAGAATGCTAG+AGG - chr5_3:50496022-50496041 None:intergenic 35.0%
! ATCATTCTCTGAAAAGAGAG+AGG - chr5_3:50496050-50496069 None:intergenic 35.0%
TCATCGACAATAATGAGAAC+GGG + chr5_3:50496113-50496132 Msa0816270:CDS 35.0%
! TCAATTCGTTGTCTTTTAGC+GGG - chr5_3:50496169-50496188 None:intergenic 35.0%
! CTCAATTCGTTGTCTTTTAG+CGG - chr5_3:50496170-50496189 None:intergenic 35.0%
! GAAGATCAAAATTTTCACCG+GGG - chr5_3:50496304-50496323 None:intergenic 35.0%
CTGCAGATACTTGAGATATA+TGG + chr5_3:50496332-50496351 Msa0816270:three_prime_UTR 35.0%
TTTCTTCATTGCAGGTTCCA+TGG - chr5_3:50487857-50487876 None:intergenic 40.0%
!!! TCAGTGATGCTGTGTTGTTT+TGG - chr5_3:50487904-50487923 None:intergenic 40.0%
CCACGTGAGGTAAATGAATT+CGG - chr5_3:50488133-50488152 None:intergenic 40.0%
! ACTTATCGATTGTCTTGTGG+CGG + chr5_3:50488185-50488204 Msa0816270:CDS 40.0%
CACTATAGCACTGTTGCATA+GGG + chr5_3:50488854-50488873 Msa0816270:intron 40.0%
ACTATAGCACTGTTGCATAG+GGG + chr5_3:50488855-50488874 Msa0816270:intron 40.0%
TCATGAATCGTGTCATATGC+AGG + chr5_3:50488995-50489014 Msa0816270:intron 40.0%
CATGAATCGTGTCATATGCA+GGG + chr5_3:50488996-50489015 Msa0816270:intron 40.0%
TTGGAGGGAAAAGATGTTTC+AGG + chr5_3:50489095-50489114 Msa0816270:CDS 40.0%
CTAGTTTCAAAACTAGGACC+AGG - chr5_3:50489563-50489582 None:intergenic 40.0%
CATATTGTGGATGATGCACT+CGG - chr5_3:50489655-50489674 None:intergenic 40.0%
AAGAGGGGGAATATGTGATA+TGG - chr5_3:50489685-50489704 None:intergenic 40.0%
!!! TCGTCTGATTTTTCAAGAGG+GGG - chr5_3:50489699-50489718 None:intergenic 40.0%
!!! CCCTTTTTTCCCCATTAATG+AGG + chr5_3:50490284-50490303 Msa0816270:intron 40.0%
CTTCATCTTCTTCGCAATTC+TGG - chr5_3:50490469-50490488 None:intergenic 40.0%
AAGCTTGGATTGCGTATCTT+AGG + chr5_3:50490502-50490521 Msa0816270:CDS 40.0%
TTGAACACATCCAATGGAAG+TGG - chr5_3:50490531-50490550 None:intergenic 40.0%
TCCATTGGATGTGTTCAAAG+AGG + chr5_3:50490533-50490552 Msa0816270:CDS 40.0%
ACCTCTTTGAACACATCCAA+TGG - chr5_3:50490537-50490556 None:intergenic 40.0%
! TTGGTAGTAGTCCTGAAATG+TGG + chr5_3:50490989-50491008 Msa0816270:intron 40.0%
! AATGGATTTGACTTTGACCC+TGG - chr5_3:50491054-50491073 None:intergenic 40.0%
AAGGGATACAATGAATCTGG+GGG - chr5_3:50491549-50491568 None:intergenic 40.0%
CAAGGGATACAATGAATCTG+GGG - chr5_3:50491550-50491569 None:intergenic 40.0%
CTCAAGGGATACAATGAATC+TGG - chr5_3:50491552-50491571 None:intergenic 40.0%
! ATGATGGGATTAGACAGATG+AGG - chr5_3:50491887-50491906 None:intergenic 40.0%
TGTGCAGTGATTTCTTGACA+AGG + chr5_3:50491987-50492006 Msa0816270:intron 40.0%
TTGACAAGGTCGTATGATGT+AGG + chr5_3:50492001-50492020 Msa0816270:CDS 40.0%
GCTGGGTCATTAGGATATAA+AGG - chr5_3:50492057-50492076 None:intergenic 40.0%
TATATCCTAATGACCCAGCA+TGG + chr5_3:50492058-50492077 Msa0816270:CDS 40.0%
! GCAACATTAATATGCCGGTT+TGG + chr5_3:50492300-50492319 Msa0816270:intron 40.0%
! TGATCAGGTCCAATTAGTCT+AGG + chr5_3:50492487-50492506 Msa0816270:intron 40.0%
CTGATTGGACCTAGACTAAT+TGG - chr5_3:50492499-50492518 None:intergenic 40.0%
! CAATTAGTCTAGGTCCAATC+AGG + chr5_3:50492497-50492516 Msa0816270:intron 40.0%
ATTTGGCGCATAGATGGATA+TGG + chr5_3:50492709-50492728 Msa0816270:intron 40.0%
ATGGATATGGAATGCGATTG+AGG + chr5_3:50492722-50492741 Msa0816270:intron 40.0%
CTCCATAACATACAAGGCTT+TGG - chr5_3:50492864-50492883 None:intergenic 40.0%
ATTGTCCACTTCGAAAAGAG+AGG - chr5_3:50492957-50492976 None:intergenic 40.0%
GTAATAACCAATGCACCAGA+AGG - chr5_3:50493263-50493282 None:intergenic 40.0%
!! TGCATTGGTTATTACAGCTC+TGG + chr5_3:50493268-50493287 Msa0816270:CDS 40.0%
ACATCCTTCGATCAACTGTT+TGG + chr5_3:50493310-50493329 Msa0816270:CDS 40.0%
ATACGAAGTCAAGAGAACAG+AGG + chr5_3:50493438-50493457 Msa0816270:intron 40.0%
TACAACATTAGCGAGAGTTG+GGG + chr5_3:50493746-50493765 Msa0816270:intron 40.0%
TGGTAGAAACTAGATTTGGG+TGG + chr5_3:50493790-50493809 Msa0816270:intron 40.0%
GAAACTAGATTTGGGTGGTT+TGG + chr5_3:50493795-50493814 Msa0816270:intron 40.0%
GGTAAAGAGAGTAGATCTGA+TGG + chr5_3:50493848-50493867 Msa0816270:intron 40.0%
AAAGAGAGTAGATCTGATGG+AGG + chr5_3:50493851-50493870 Msa0816270:intron 40.0%
AAGAGAGTAGATCTGATGGA+GGG + chr5_3:50493852-50493871 Msa0816270:intron 40.0%
AGGTCAAATCACTAGAGGTA+GGG + chr5_3:50493875-50493894 Msa0816270:intron 40.0%
ATGCAGCAAACTCCACTTAT+TGG + chr5_3:50494003-50494022 Msa0816270:intron 40.0%
TGCAGCAAACTCCACTTATT+GGG + chr5_3:50494004-50494023 Msa0816270:intron 40.0%
!! TCACTTTGAAACTCAGCTGT+TGG + chr5_3:50494134-50494153 Msa0816270:intron 40.0%
GTTGGATTGCAGATTTGTGT+AGG + chr5_3:50494152-50494171 Msa0816270:intron 40.0%
GGAAACATGGAGGATGTAAT+AGG + chr5_3:50494211-50494230 Msa0816270:intron 40.0%
ATGTTGACAAATTGCAGCCA+TGG - chr5_3:50494306-50494325 None:intergenic 40.0%
GATAAGAGAAATGCAGGCAT+TGG + chr5_3:50494333-50494352 Msa0816270:intron 40.0%
CTACTGTCCGATCTCTTATA+TGG + chr5_3:50494392-50494411 Msa0816270:intron 40.0%
!! ATGTCACTATTGGTTCTGTC+TGG + chr5_3:50494483-50494502 Msa0816270:intron 40.0%
!! TGTCACTATTGGTTCTGTCT+GGG + chr5_3:50494484-50494503 Msa0816270:intron 40.0%
CCGCCTTCTTTCTGTTTAAT+TGG + chr5_3:50494695-50494714 Msa0816270:intron 40.0%
GAATCTGATCCTATGAAGTC+AGG + chr5_3:50494864-50494883 Msa0816270:CDS 40.0%
!! ATTTTCTCCTGGTCTGGTTT+AGG - chr5_3:50494954-50494973 None:intergenic 40.0%
AAACCAGACCAGGAGAAAAT+TGG + chr5_3:50494954-50494973 Msa0816270:intron 40.0%
! TTTCCAATTTTCTCCTGGTC+TGG - chr5_3:50494960-50494979 None:intergenic 40.0%
TACATATTGCGTGAGGTAAG+AGG + chr5_3:50495032-50495051 Msa0816270:intron 40.0%
GCAAGCATGCATTCATGTAA+GGG - chr5_3:50495140-50495159 None:intergenic 40.0%
AGCAAGCATGCATTCATGTA+AGG - chr5_3:50495141-50495160 None:intergenic 40.0%
CTGATGAAGATTTCTTGAGC+AGG + chr5_3:50495297-50495316 Msa0816270:intron 40.0%
CGTTCATCAGTGGCTTATTA+AGG + chr5_3:50495798-50495817 Msa0816270:intron 40.0%
TTGCACCATTGCAGATTACA+CGG + chr5_3:50495981-50496000 Msa0816270:intron 40.0%
! TTCTCTGAAAAGAGAGAGGA+TGG - chr5_3:50496046-50496065 None:intergenic 40.0%
! CAGAGAATGATTTTGCTGGT+TGG + chr5_3:50496059-50496078 Msa0816270:CDS 40.0%
CATCGACAATAATGAGAACG+GGG + chr5_3:50496114-50496133 Msa0816270:CDS 40.0%
GAACGGGGCTAAAGATTTAT+TGG + chr5_3:50496129-50496148 Msa0816270:CDS 40.0%
GGCTAAAGATTTATTGGACC+AGG + chr5_3:50496135-50496154 Msa0816270:CDS 40.0%
! CAATTCGTTGTCTTTTAGCG+GGG - chr5_3:50496168-50496187 None:intergenic 40.0%
GGAGAGAAGTTCTTGACCTA+GGG - chr5_3:50487935-50487954 None:intergenic 45.0%
AGGAGAGAAGTTCTTGACCT+AGG - chr5_3:50487936-50487955 None:intergenic 45.0%
AGATGAATGTGAGGAGGAGA+GGG - chr5_3:50487981-50488000 None:intergenic 45.0%
AAGAAGGGGAGATGAATGTG+AGG - chr5_3:50487990-50488009 None:intergenic 45.0%
!! AGAGAATCGATTCGAGGATG+TGG - chr5_3:50488023-50488042 None:intergenic 45.0%
!! GAAGAGAGAGAATCGATTCG+AGG - chr5_3:50488029-50488048 None:intergenic 45.0%
CCGAATTCATTTACCTCACG+TGG + chr5_3:50488130-50488149 Msa0816270:CDS 45.0%
GAAACTCGTCGAACTTCGAA+CGG - chr5_3:50488158-50488177 None:intergenic 45.0%
ATGACAATGTACAGCGTGTG+TGG + chr5_3:50488650-50488669 Msa0816270:intron 45.0%
TTGCTTAGCGCCTTTATGGA+AGG + chr5_3:50488677-50488696 Msa0816270:intron 45.0%
TGCTTAGCGCCTTTATGGAA+GGG + chr5_3:50488678-50488697 Msa0816270:intron 45.0%
GCACTATAGCACTGTTGCAT+AGG + chr5_3:50488853-50488872 Msa0816270:intron 45.0%
CAATCTGCGTTTGACAACAG+TGG + chr5_3:50488903-50488922 Msa0816270:intron 45.0%
! ACAGTGGTCAGCGTGTTATT+TGG + chr5_3:50488919-50488938 Msa0816270:intron 45.0%
GATAAAACTGCAAGCGCAGA+TGG + chr5_3:50489259-50489278 Msa0816270:CDS 45.0%
GTTAGTAAGACTCTAGCCAG+TGG + chr5_3:50489309-50489328 Msa0816270:intron 45.0%
GAGAAGAAGATGACCATAGC+TGG + chr5_3:50489364-50489383 Msa0816270:intron 45.0%
! ACATCACCTCCTTTTCTGCT+AGG + chr5_3:50489506-50489525 Msa0816270:intron 45.0%
GATGTTCTGCCTAGCAGAAA+AGG - chr5_3:50489518-50489537 None:intergenic 45.0%
! ATTTTTCTGCTAGGCAGACC+TGG + chr5_3:50489542-50489561 Msa0816270:intron 45.0%
GGGAGCAACATTAACGAGTA+CGG - chr5_3:50490265-50490284 None:intergenic 45.0%
! TCTTAGGTTGCCACTTCCAT+TGG + chr5_3:50490518-50490537 Msa0816270:CDS 45.0%
TGCTATTAAAGCCCCTGTCA+TGG + chr5_3:50491021-50491040 Msa0816270:intron 45.0%
CCAAACATTTCTCCACTTGG+CGG + chr5_3:50491196-50491215 Msa0816270:intron 45.0%
CAAACATTTCTCCACTTGGC+GGG + chr5_3:50491197-50491216 Msa0816270:intron 45.0%
AAACATTTCTCCACTTGGCG+GGG + chr5_3:50491198-50491217 Msa0816270:intron 45.0%
ACAGATGAGGAATCACTGCT+TGG - chr5_3:50491874-50491893 None:intergenic 45.0%
ACAAGGTCGTATGATGTAGG+TGG + chr5_3:50492004-50492023 Msa0816270:CDS 45.0%
TGGGTATTCCAATCCATGCT+GGG - chr5_3:50492074-50492093 None:intergenic 45.0%
TTGGGTATTCCAATCCATGC+TGG - chr5_3:50492075-50492094 None:intergenic 45.0%
TCATGGCAAAACATCGTGCA+AGG + chr5_3:50492137-50492156 Msa0816270:CDS 45.0%
! ACATCGTGCAAGGTTTTTCC+AGG + chr5_3:50492147-50492166 Msa0816270:CDS 45.0%
!!! TGTCATGTTTTTTGTCGGGG+AGG + chr5_3:50492663-50492682 Msa0816270:intron 45.0%
!!! GTCATGTTTTTTGTCGGGGA+GGG + chr5_3:50492664-50492683 Msa0816270:intron 45.0%
CTTGTCCACTTAGCAAAGAG+AGG - chr5_3:50492785-50492804 None:intergenic 45.0%
CTCTCTTTGCTAAGTGGACA+AGG + chr5_3:50492783-50492802 Msa0816270:intron 45.0%
TTGCTTTCAGTTCCACCTTC+TGG + chr5_3:50493245-50493264 Msa0816270:CDS 45.0%
ATAACCAATGCACCAGAAGG+TGG - chr5_3:50493260-50493279 None:intergenic 45.0%
TGCACCAAACAGTTGATCGA+AGG - chr5_3:50493317-50493336 None:intergenic 45.0%
CTCTTTACCACAGAATCCAC+AGG - chr5_3:50493837-50493856 None:intergenic 45.0%
GAGGTCAAATCACTAGAGGT+AGG + chr5_3:50493874-50493893 Msa0816270:intron 45.0%
GGTCAAATCACTAGAGGTAG+GGG + chr5_3:50493876-50493895 Msa0816270:intron 45.0%
CCAAGCCTTAACCCAATAAG+TGG - chr5_3:50494018-50494037 None:intergenic 45.0%
CCACTTATTGGGTTAAGGCT+TGG + chr5_3:50494015-50494034 Msa0816270:intron 45.0%
AGGTTTCTATTGGTAGAGCC+AGG + chr5_3:50494070-50494089 Msa0816270:intron 45.0%
TATTGGTAGAGCCAGGAGAT+TGG + chr5_3:50494077-50494096 Msa0816270:intron 45.0%
TTGGTTGGATTCCTGGTTCA+AGG + chr5_3:50494096-50494115 Msa0816270:intron 45.0%
TTGGATTCCTGGTTCAAGGA+TGG + chr5_3:50494100-50494119 Msa0816270:intron 45.0%
CCTTAAACCATCCTTGAACC+AGG - chr5_3:50494110-50494129 None:intergenic 45.0%
CCTGGTTCAAGGATGGTTTA+AGG + chr5_3:50494107-50494126 Msa0816270:intron 45.0%
GGTTCAAGGATGGTTTAAGG+TGG + chr5_3:50494110-50494129 Msa0816270:intron 45.0%
TTCTGGCATAGGAGGAAACA+TGG + chr5_3:50494198-50494217 Msa0816270:intron 45.0%
ATCAGCACTGCCATAATCCA+TGG + chr5_3:50494270-50494289 Msa0816270:intron 45.0%
TTGACAAATTGCAGCCATGG+TGG - chr5_3:50494303-50494322 None:intergenic 45.0%
CGAAGAGACTGCTTCTAACT+TGG + chr5_3:50494779-50494798 Msa0816270:CDS 45.0%
AATGGTCAAGGCCTGATTTC+TGG - chr5_3:50494833-50494852 None:intergenic 45.0%
TTGAGCAGGAAGCTCTCTTT+GGG + chr5_3:50495311-50495330 Msa0816270:intron 45.0%
CAAAACACTTACCGTGAGAC+AGG - chr5_3:50495369-50495388 None:intergenic 45.0%
AGTCGTCACCAGAAGATACA+AGG - chr5_3:50495962-50495981 None:intergenic 45.0%
ACCATTGCAGATTACACGGA+GGG + chr5_3:50495985-50496004 Msa0816270:intron 45.0%
! GAAAGAAAAAAGGCATGCCC+CGG + chr5_3:50496284-50496303 Msa0816270:three_prime_UTR 45.0%
GAGGTTGTTGATGTGTGAGG+CGG - chr5_3:50487959-50487978 None:intergenic 50.0%
AGGGAGGTTGTTGATGTGTG+AGG - chr5_3:50487962-50487981 None:intergenic 50.0%
GAGATGAATGTGAGGAGGAG+AGG - chr5_3:50487982-50488001 None:intergenic 50.0%
AAGGGGAGATGAATGTGAGG+AGG - chr5_3:50487987-50488006 None:intergenic 50.0%
TGTGGTGAGGTGGAGAAGAA+GGG - chr5_3:50488005-50488024 None:intergenic 50.0%
ATGTGGTGAGGTGGAGAAGA+AGG - chr5_3:50488006-50488025 None:intergenic 50.0%
!! ATCGATTCGAGGATGTGGTG+AGG - chr5_3:50488018-50488037 None:intergenic 50.0%
TTCGGATTGATCGGAACCAG+AGG - chr5_3:50488115-50488134 None:intergenic 50.0%
!! GTGGTCAGCGTGTTATTTGG+TGG + chr5_3:50488922-50488941 Msa0816270:intron 50.0%
GTTCTGCCTAGCAGAAAAGG+AGG - chr5_3:50489515-50489534 None:intergenic 50.0%
ATTAAAGCCCCTGTCATGGC+AGG + chr5_3:50491025-50491044 Msa0816270:intron 50.0%
TTAAAGCCCCTGTCATGGCA+GGG + chr5_3:50491026-50491045 Msa0816270:intron 50.0%
AGTAGGAACCTGTGACCTTC+TGG + chr5_3:50491084-50491103 Msa0816270:intron 50.0%
TTGTGTGACCAGAAGGTCAC+AGG - chr5_3:50491095-50491114 None:intergenic 50.0%
CCGCCAAGTGGAGAAATGTT+TGG - chr5_3:50491199-50491218 None:intergenic 50.0%
! GAGGAATCACTGCTTGGTGA+AGG - chr5_3:50491868-50491887 None:intergenic 50.0%
CCAATCCATGCTGGGTCATT+AGG - chr5_3:50492066-50492085 None:intergenic 50.0%
CCTAATGACCCAGCATGGAT+TGG + chr5_3:50492063-50492082 Msa0816270:CDS 50.0%
CTGGAAGAAGGGGTGACTTT+AGG - chr5_3:50493184-50493203 None:intergenic 50.0%
AGCCAGGTAAGCTGGAAGAA+GGG - chr5_3:50493195-50493214 None:intergenic 50.0%
TCTTTGCAAATGAGGCAGCC+AGG - chr5_3:50493211-50493230 None:intergenic 50.0%
AGTTCCACCTTCTGGTGCAT+TGG + chr5_3:50493253-50493272 Msa0816270:CDS 50.0%
!! CGATCAACTGTTTGGTGCAC+CGG + chr5_3:50493318-50493337 Msa0816270:CDS 50.0%
!! GATCAACTGTTTGGTGCACC+GGG + chr5_3:50493319-50493338 Msa0816270:CDS 50.0%
GCATGTAGAGAGAAGACCTG+TGG + chr5_3:50493818-50493837 Msa0816270:intron 50.0%
GAGAAGACCTGTGGATTCTG+TGG + chr5_3:50493827-50493846 Msa0816270:intron 50.0%
AGAGTAGATCTGATGGAGGG+AGG + chr5_3:50493855-50493874 Msa0816270:intron 50.0%
GAGGGAGGTCAAATCACTAG+AGG + chr5_3:50493870-50493889 Msa0816270:intron 50.0%
CAGGAATCCAACCAATCTCC+TGG - chr5_3:50494091-50494110 None:intergenic 50.0%
! CAGGAGATTGGTTGGATTCC+TGG + chr5_3:50494089-50494108 Msa0816270:intron 50.0%
TGGCATAGGAGGAAACATGG+AGG + chr5_3:50494201-50494220 Msa0816270:intron 50.0%
GGAGGATGTAATAGGCTCTG+TGG + chr5_3:50494219-50494238 Msa0816270:intron 50.0%
GTAATAGGCTCTGTGGCCTA+TGG + chr5_3:50494226-50494245 Msa0816270:intron 50.0%
! TGGCATGGCACCATGGATTA+TGG - chr5_3:50494283-50494302 None:intergenic 50.0%
AAATTGCAGCCATGGTGGCA+TGG - chr5_3:50494298-50494317 None:intergenic 50.0%
GCAAAGCTCTGCCAGAAATC+AGG + chr5_3:50494819-50494838 Msa0816270:CDS 50.0%
CTCATAGCGCCTGACTTCAT+AGG - chr5_3:50494876-50494895 None:intergenic 50.0%
CTTGAGCAGGAAGCTCTCTT+TGG + chr5_3:50495310-50495329 Msa0816270:intron 50.0%
ACTACTGTCCTCCTGTCTCA+CGG + chr5_3:50495355-50495374 Msa0816270:CDS 50.0%
AACACTTACCGTGAGACAGG+AGG - chr5_3:50495366-50495385 None:intergenic 50.0%
TGCAACAATACTTGGAGCGG+AGG + chr5_3:50495585-50495604 Msa0816270:CDS 50.0%
CACCATTGCAGATTACACGG+AGG + chr5_3:50495984-50496003 Msa0816270:intron 50.0%
ACCCTCCGTGTAATCTGCAA+TGG - chr5_3:50495989-50496008 None:intergenic 50.0%
GTTGTTGATGTGTGAGGCGG+AGG - chr5_3:50487956-50487975 None:intergenic 55.0%
TGAATGTGAGGAGGAGAGGG+AGG - chr5_3:50487978-50487997 None:intergenic 55.0%
GTGGTGAGGTGGAGAAGAAG+GGG - chr5_3:50488004-50488023 None:intergenic 55.0%
GATTCGAGGATGTGGTGAGG+TGG - chr5_3:50488015-50488034 None:intergenic 55.0%
AAGGGAGTTGAGGGAGGAGA+GGG - chr5_3:50488065-50488084 None:intergenic 55.0%
GGATTGATCGGAACCAGAGG+AGG - chr5_3:50488112-50488131 None:intergenic 55.0%
GGGGCTATTGTGTGACCAGA+AGG - chr5_3:50491102-50491121 None:intergenic 55.0%
ATTTCTCCACTTGGCGGGGT+TGG + chr5_3:50491202-50491221 Msa0816270:intron 55.0%
AGGTGGTGTAGTCAGCGTGA+TGG + chr5_3:50492021-50492040 Msa0816270:CDS 55.0%
ACCCCTTCTTCCAGCTTACC+TGG + chr5_3:50493190-50493209 Msa0816270:CDS 55.0%
GCCAGGTAAGCTGGAAGAAG+GGG - chr5_3:50493194-50493213 None:intergenic 55.0%
CAGCCAGGTAAGCTGGAAGA+AGG - chr5_3:50493196-50493215 None:intergenic 55.0%
AATGAGGCAGCCAGGTAAGC+TGG - chr5_3:50493203-50493222 None:intergenic 55.0%
GGTAGAGCCAGGAGATTGGT+TGG + chr5_3:50494081-50494100 Msa0816270:intron 55.0%
AGACAGGAGGACAGTAGTGG+TGG - chr5_3:50495353-50495372 None:intergenic 55.0%
GTGAGACAGGAGGACAGTAG+TGG - chr5_3:50495356-50495375 None:intergenic 55.0%
GATTACACGGAGGGTGAAGC+AGG + chr5_3:50495994-50496013 Msa0816270:intron 55.0%
! TTTTAGCGGGGCTGTGTTCC+TGG - chr5_3:50496156-50496175 None:intergenic 55.0%
AGGGAGGAGAGGGAGGAAGA+AGG - chr5_3:50488055-50488074 None:intergenic 60.0%
GAAGGGAGTTGAGGGAGGAG+AGG - chr5_3:50488066-50488085 None:intergenic 60.0%
ATCGGAACCAGAGGAGGAGC+TGG - chr5_3:50488106-50488125 None:intergenic 60.0%
ACTTCGAACGGAGCCACGTG+AGG - chr5_3:50488146-50488165 None:intergenic 60.0%
CTGGAACCCTGCCATGACAG+GGG - chr5_3:50491035-50491054 None:intergenic 60.0%
CCTGGAACCCTGCCATGACA+GGG - chr5_3:50491036-50491055 None:intergenic 60.0%
CCTGTCATGGCAGGGTTCCA+GGG + chr5_3:50491034-50491053 Msa0816270:intron 60.0%
ATGTAGCCAACCCCGCCAAG+TGG - chr5_3:50491211-50491230 None:intergenic 60.0%
!! ACTTGGCGGGGTTGGCTACA+TGG + chr5_3:50491210-50491229 Msa0816270:intron 60.0%
GCTCTGTGGCCTATGGAAGC+TGG + chr5_3:50494233-50494252 Msa0816270:intron 60.0%
GCCTATGGAAGCTGGAAGCC+TGG + chr5_3:50494241-50494260 Msa0816270:intron 60.0%
GCCAGGCTTCCAGCTTCCAT+AGG - chr5_3:50494245-50494264 None:intergenic 60.0%
!! GGCAGTGCTGATTCTGTGCC+AGG - chr5_3:50494262-50494281 None:intergenic 60.0%
!! TCCATGGTGCCATGCCACCA+TGG + chr5_3:50494286-50494305 Msa0816270:intron 60.0%
GGAGTTGAGGGAGGAGAGGG+AGG - chr5_3:50488062-50488081 None:intergenic 65.0%
TGGCGGAAGGGAGTTGAGGG+AGG - chr5_3:50488071-50488090 None:intergenic 65.0%
!! CGGTGGCGGAAGGGAGTTGA+GGG - chr5_3:50488074-50488093 None:intergenic 65.0%
!! TGGTGGTTGCGGTGGCGGAA+GGG - chr5_3:50488083-50488102 None:intergenic 65.0%
!! GGAGGAGCTGGTGGTGGTTG+CGG - chr5_3:50488094-50488113 None:intergenic 65.0%
ACCACCACCAGCTCCTCCTC+TGG + chr5_3:50488096-50488115 Msa0816270:CDS 65.0%
ACCAGAGGAGGAGCTGGTGG+TGG - chr5_3:50488100-50488119 None:intergenic 65.0%
GGAACCAGAGGAGGAGCTGG+TGG - chr5_3:50488103-50488122 None:intergenic 65.0%
CCCTGTCATGGCAGGGTTCC+AGG + chr5_3:50491033-50491052 Msa0816270:intron 65.0%
CCCTGGAACCCTGCCATGAC+AGG - chr5_3:50491037-50491056 None:intergenic 65.0%
GCCATGGTGGCATGGCACCA+TGG - chr5_3:50494290-50494309 None:intergenic 65.0%
!! GCGGTGGCGGAAGGGAGTTG+AGG - chr5_3:50488075-50488094 None:intergenic 70.0%
!! GTGGTGGTTGCGGTGGCGGA+AGG - chr5_3:50488084-50488103 None:intergenic 70.0%
!! GCTGGTGGTGGTTGCGGTGG+CGG - chr5_3:50488088-50488107 None:intergenic 70.0%
!! GGAGCTGGTGGTGGTTGCGG+TGG - chr5_3:50488091-50488110 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 50487832 50496455 50487832 ID=Msa0816270;Name=Msa0816270
chr5_3 mRNA 50487832 50496455 50487832 ID=Msa0816270-mRNA-1;Parent=Msa0816270;Name=Msa0816270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=24|0.92|0.92|1|0.84|0.85|14|257|609
chr5_3 exon 50487832 50488323 50487832 ID=Msa0816270-mRNA-1:exon:15153;Parent=Msa0816270-mRNA-1
chr5_3 exon 50488442 50488515 50488442 ID=Msa0816270-mRNA-1:exon:15154;Parent=Msa0816270-mRNA-1
chr5_3 exon 50489055 50489116 50489055 ID=Msa0816270-mRNA-1:exon:15155;Parent=Msa0816270-mRNA-1
chr5_3 exon 50489257 50489308 50489257 ID=Msa0816270-mRNA-1:exon:15156;Parent=Msa0816270-mRNA-1
chr5_3 exon 50489650 50489750 50489650 ID=Msa0816270-mRNA-1:exon:15157;Parent=Msa0816270-mRNA-1
chr5_3 exon 50490200 50490249 50490200 ID=Msa0816270-mRNA-1:exon:15158;Parent=Msa0816270-mRNA-1
chr5_3 exon 50490453 50490554 50490453 ID=Msa0816270-mRNA-1:exon:15159;Parent=Msa0816270-mRNA-1
chr5_3 exon 50491854 50491906 50491854 ID=Msa0816270-mRNA-1:exon:15160;Parent=Msa0816270-mRNA-1
chr5_3 exon 50491994 50492168 50491994 ID=Msa0816270-mRNA-1:exon:15161;Parent=Msa0816270-mRNA-1
chr5_3 exon 50493167 50493340 50493167 ID=Msa0816270-mRNA-1:exon:15162;Parent=Msa0816270-mRNA-1
chr5_3 exon 50494744 50494894 50494744 ID=Msa0816270-mRNA-1:exon:15163;Parent=Msa0816270-mRNA-1
chr5_3 exon 50495319 50495376 50495319 ID=Msa0816270-mRNA-1:exon:15164;Parent=Msa0816270-mRNA-1
chr5_3 exon 50495501 50495606 50495501 ID=Msa0816270-mRNA-1:exon:15165;Parent=Msa0816270-mRNA-1
chr5_3 exon 50495995 50496455 50495995 ID=Msa0816270-mRNA-1:exon:15166;Parent=Msa0816270-mRNA-1
chr5_3 five_prime_UTR 50487832 50487855 50487832 ID=Msa0816270-mRNA-1:five_prime_utr;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50487856 50488323 50487856 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50488442 50488515 50488442 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50489055 50489116 50489055 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50489257 50489308 50489257 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50489650 50489750 50489650 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50490200 50490249 50490200 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50490453 50490554 50490453 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50491854 50491906 50491854 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50491994 50492168 50491994 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50493167 50493340 50493167 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50494744 50494894 50494744 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50495319 50495376 50495319 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50495501 50495606 50495501 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 CDS 50495995 50496198 50495995 ID=Msa0816270-mRNA-1:cds;Parent=Msa0816270-mRNA-1
chr5_3 three_prime_UTR 50496199 50496455 50496199 ID=Msa0816270-mRNA-1:three_prime_utr;Parent=Msa0816270-mRNA-1
Gene Sequence

>Msa0816270

ATGGAACCTGCAATGAAGAAAACGAAGAAGATGAAGAAGAAAACACCAAAACAACACAGCATCACTGAAATCAAAACCCTAGGTCAAGAACTTCTCTCCTCCGCCTCACACATCAACAACCTCCCTCTCCTCCTCACATTCATCTCCCCTTCTTCTCCACCTCACCACATCCTCGAATCGATTCTCTCTCTTCACTCCTTCTTCCTCCCTCTCCTCCCTCAACTCCCTTCCGCCACCGCAACCACCACCAGCTCCTCCTCTGGTTCCGATCAATCCGAATTCATTTACCTCACGTGGCTCCGTTCGAAGTTCGACGAGTTTCTCAAATCACTTATCGATTGTCTTGTGGCGGATGAATGCGATGAAACTATTAAGGAAGTTGTGCTTGATACTTTGATGGAGTTTGTTAAGGTTGCTAATGGTGGAGCATTTCATTCTTCATTATATAACAGAATTCTCCGTAGTATTATTCACTCTACTAGTTCTGCTGAATTTTTGATTGATTTACTAATATCGAAGTATTTCAAGTATATTGATGTTCGTTATTTTACATTCATAAGCCTAGAAAAGCTCACAAGAAATTTGGAGGGAAAAGATGTTTCAGATGATAAAACTGCAAGCGCAGATGGCACCAATGAAAGTCAATTAAGCTCAAGTACCGAGTGCATCATCCACAATATGTACTACACCATATCACATATTCCCCCTCTTGAAAAATCAGACGATACATCTGATTTAGAAATGTGGAGTGTATCAGATGTGGATGCAGATGATAAGCAGCTTAAGTCCAAGAAACGTAACAATAATGTATTGTCTGCAGCCAGAATTGCGAAGAAGATGAAGTTAAAATTTACTAAAGCTTGGATTGCGTATCTTAGGTTGCCACTTCCATTGGATGTGTTCAAAGAGGTTCTTGTAAACCTTCACCAAGCAGTGATTCCTCATCTGTCTAATCCCATCATTGATTTCTTGACAAGGTCGTATGATGTAGGTGGTGTAGTCAGCGTGATGGCTCTTAATAGCCTTTATATCCTAATGACCCAGCATGGATTGGAATACCCAAAATTTTATGAAAAACTCTATGCACTATTAGTTCCATCTATCTTCATGGCAAAACATCGTGCAAGGTTTTTCCAGCTTCTTGATTCTTGCCTAAAGTCACCCCTTCTTCCAGCTTACCTGGCTGCCTCATTTGCAAAGAAATTGAGTAGGCTGTTGCTTTCAGTTCCACCTTCTGGTGCATTGGTTATTACAGCTCTGGTTCACAATATTTTGCGTAGACATCCTTCGATCAACTGTTTGGTGCACCGGGAAGAAGTTAATGAAGACACTGAACAAAGAACAGACGAAGAGACTGCTTCTAACTTGGATAATGCTCAGAATGGTGCAAAGCTCTGCCAGAAATCAGGCCTTGACCATTTTAACATTGAGGAATCTGATCCTATGAAGTCAGGCGCTATGAGAAGCTCTCTTTGGGAAATTGATACTGCTCTCCACCACTACTGTCCTCCTGTCTCACGGTTTGCTTTGTCTCTTGGGACTGATTTGACAGTCAGAGCAAAAACAAGCGAAGTTAATATTGGTGATTTTAGTGCTGGTTCTTATGCAACAATACTTGGAGCGGAGATTACACGGAGGGTGAAGCAGGTTCCTCTAGCATTCTACAAAACAACTCCATCCTCTCTCTTTTCAGAGAATGATTTTGCTGGTTGGACTTTCAAATGTGAAGAAAATTCTGAAACGATCATCGACAATAATGAGAACGGGGCTAAAGATTTATTGGACCAGGAACACAGCCCCGCTAAAAGACAACGAATTGAGTGTCAGTGA

Protein sequence

>Msa0816270

MEPAMKKTKKMKKKTPKQHSITEIKTLGQELLSSASHINNLPLLLTFISPSSPPHHILESILSLHSFFLPLLPQLPSATATTTSSSSGSDQSEFIYLTWLRSKFDEFLKSLIDCLVADECDETIKEVVLDTLMEFVKVANGGAFHSSLYNRILRSIIHSTSSAEFLIDLLISKYFKYIDVRYFTFISLEKLTRNLEGKDVSDDKTASADGTNESQLSSSTECIIHNMYYTISHIPPLEKSDDTSDLEMWSVSDVDADDKQLKSKKRNNNVLSAARIAKKMKLKFTKAWIAYLRLPLPLDVFKEVLVNLHQAVIPHLSNPIIDFLTRSYDVGGVVSVMALNSLYILMTQHGLEYPKFYEKLYALLVPSIFMAKHRARFFQLLDSCLKSPLLPAYLAASFAKKLSRLLLSVPPSGALVITALVHNILRRHPSINCLVHREEVNEDTEQRTDEETASNLDNAQNGAKLCQKSGLDHFNIEESDPMKSGAMRSSLWEIDTALHHYCPPVSRFALSLGTDLTVRAKTSEVNIGDFSAGSYATILGAEITRRVKQVPLAFYKTTPSSLFSENDFAGWTFKCEENSETIIDNNENGAKDLLDQEHSPAKRQRIECQ*