Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817410 | XP_003611115.1 | 78.947 | 76 | 13 | 2 | 2 | 74 | 27 | 102 | 5.27e-27 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817410 | G7KDD8 | 78.947 | 76 | 13 | 2 | 2 | 74 | 27 | 102 | 2.52e-27 | 118 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031340 | Msa0817410 | 0.813036 | 3.137064e-51 | -8.615850e-47 |
| Msa0171290 | Msa0817410 | 0.810114 | 1.353992e-50 | -8.615850e-47 |
| Msa0507680 | Msa0817410 | 0.806805 | 6.880412e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817410 | MtrunA17_Chr5g0397721 | 78.947 | 76 | 13 | 2 | 2 | 74 | 27 | 102 | 4.85e-31 | 118 |
| Msa0817410 | MtrunA17_Chr8g0386571 | 61.842 | 76 | 26 | 2 | 2 | 74 | 26 | 101 | 9.28e-24 | 97.4 |
| Msa0817410 | MtrunA17_Chr3g0139371 | 66.667 | 66 | 7 | 1 | 74 | 124 | 292 | 357 | 1.53e-19 | 84.7 |
| Msa0817410 | MtrunA17_Chr1g0203361 | 46.154 | 65 | 34 | 1 | 8 | 71 | 30 | 94 | 7.36e-15 | 72.0 |
| Msa0817410 | MtrunA17_Chr4g0070551 | 78.947 | 38 | 8 | 0 | 123 | 160 | 413 | 450 | 1.26e-12 | 65.5 |
| Msa0817410 | MtrunA17_Chr3g0123491 | 54.688 | 64 | 14 | 1 | 75 | 123 | 315 | 378 | 1.35e-12 | 65.1 |
| Msa0817410 | MtrunA17_Chr4g0058241 | 51.515 | 66 | 17 | 1 | 75 | 125 | 318 | 383 | 4.42e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817410 | AT1G63300.1 | 54.667 | 75 | 30 | 3 | 4 | 74 | 29 | 103 | 2.61e-17 | 79.3 |
| Msa0817410 | AT5G41140.1 | 46.835 | 79 | 41 | 1 | 2 | 79 | 28 | 106 | 3.00e-17 | 79.3 |
| Msa0817410 | AT5G41140.2 | 46.835 | 79 | 41 | 1 | 2 | 79 | 28 | 106 | 3.14e-17 | 79.0 |
| Msa0817410 | AT5G52280.1 | 46.875 | 64 | 33 | 1 | 9 | 71 | 32 | 95 | 1.34e-14 | 71.6 |
| Msa0817410 | AT4G32660.4 | 45.455 | 77 | 26 | 1 | 75 | 135 | 178 | 254 | 4.58e-12 | 63.5 |
| Msa0817410 | AT4G32660.3 | 45.455 | 77 | 26 | 1 | 75 | 135 | 282 | 358 | 1.10e-11 | 62.8 |
| Msa0817410 | AT4G32660.1 | 45.455 | 77 | 26 | 1 | 75 | 135 | 290 | 366 | 1.14e-11 | 62.8 |
| Msa0817410 | AT4G32660.2 | 50.000 | 66 | 17 | 1 | 75 | 124 | 290 | 355 | 1.93e-11 | 62.0 |
| Msa0817410 | AT3G53570.1 | 50.746 | 67 | 17 | 1 | 75 | 125 | 337 | 403 | 5.67e-11 | 60.8 |
| Msa0817410 | AT3G53570.4 | 50.746 | 67 | 17 | 1 | 75 | 125 | 337 | 403 | 5.67e-11 | 60.8 |
| Msa0817410 | AT3G53570.2 | 50.746 | 67 | 17 | 1 | 75 | 125 | 337 | 403 | 5.67e-11 | 60.8 |
| Msa0817410 | AT3G53570.3 | 50.746 | 67 | 17 | 1 | 75 | 125 | 323 | 389 | 5.78e-11 | 60.8 |
| Msa0817410 | AT3G53570.5 | 50.746 | 67 | 17 | 1 | 75 | 125 | 323 | 389 | 5.78e-11 | 60.8 |
Find 47 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAATGATGGAGAGAGTTT+TGG | 0.273580 | 5_3:-52612573 | Msa0817410:CDS |
| CTCCCTTGAAACACCTCCTT+CGG | 0.302889 | 5_3:+52612295 | None:intergenic |
| CAAGAAGCTTGGTGATCTTA+AGG | 0.315610 | 5_3:-52612258 | Msa0817410:intron |
| TACTTGACTGTTTCGTAAAC+CGG | 0.322285 | 5_3:+52612794 | None:intergenic |
| TATTATCAGTTTCCGAAGAC+TGG | 0.338353 | 5_3:-52612773 | Msa0817410:CDS |
| GAGAAAGCTATGGTTCAATA+TGG | 0.362696 | 5_3:-52612836 | Msa0817410:CDS |
| AACTTGTCGGTTGGAGAATC+CGG | 0.371913 | 5_3:-52612813 | Msa0817410:CDS |
| ACTTATACCTTTGAACCATA+TGG | 0.372568 | 5_3:+52612537 | None:intergenic |
| TAACTTCAGGTGTTACAATC+AGG | 0.384621 | 5_3:-52612917 | Msa0817410:intron |
| TCCCTTGAAACACCTCCTTC+GGG | 0.421634 | 5_3:+52612296 | None:intergenic |
| CTGCAGTCACAAGAAGATAA+AGG | 0.431383 | 5_3:-52608980 | Msa0817410:intron |
| GGGAACTCTACCAGACCATA+TGG | 0.433271 | 5_3:-52612552 | Msa0817410:CDS |
| ACCAAGTTCTCTTAGTAGTA+AGG | 0.441369 | 5_3:+52608855 | None:intergenic |
| TTTGGAGCACCGGGCAATGA+TGG | 0.443476 | 5_3:-52612585 | Msa0817410:CDS |
| CTCATTGAGTTATGCACGGT+TGG | 0.445803 | 5_3:-52612717 | Msa0817410:intron |
| TACCTTTGAACCATATGGTC+TGG | 0.462209 | 5_3:+52612542 | None:intergenic |
| TCCTTACTACTAAGAGAACT+TGG | 0.463783 | 5_3:-52608856 | Msa0817410:CDS |
| GGGACTGAAAGAAGATTGCT+TGG | 0.467736 | 5_3:-52608905 | Msa0817410:CDS |
| TGGTTCAATATGGAACTTGT+CGG | 0.484741 | 5_3:-52612826 | Msa0817410:CDS |
| CTCGCGAAAATTTGGAGCAC+CGG | 0.484797 | 5_3:-52612595 | Msa0817410:CDS |
| GGCCCGAAGGAGGTGTTTCA+AGG | 0.489761 | 5_3:-52612298 | Msa0817410:CDS |
| AGTAAAACCAAGTTAAATCC+TGG | 0.514388 | 5_3:+52608819 | None:intergenic |
| TCAATAGTTCCTGCTGACAT+TGG | 0.519198 | 5_3:-52612875 | Msa0817410:CDS |
| TGCTCTCATTGAGTTATGCA+CGG | 0.520407 | 5_3:-52612721 | Msa0817410:CDS |
| TCAATATGGAACTTGTCGGT+TGG | 0.521111 | 5_3:-52612822 | Msa0817410:CDS |
| ATAAATGAAGTCAAGAAGCT+TGG | 0.531624 | 5_3:-52612269 | Msa0817410:CDS |
| AAACTCTCTCCATCATTGCC+CGG | 0.533918 | 5_3:+52612576 | None:intergenic |
| TCACACACCAGGATTTAACT+TGG | 0.535841 | 5_3:-52608826 | Msa0817410:CDS |
| ATTATCAGTTTCCGAAGACT+GGG | 0.547461 | 5_3:-52612772 | Msa0817410:CDS |
| TCGCGAAAATTTGGAGCACC+GGG | 0.550481 | 5_3:-52612594 | Msa0817410:CDS |
| GTTGGTCTTCCAATGTCAGC+AGG | 0.563547 | 5_3:+52612866 | None:intergenic |
| ACAATCAGGGGTGGATGCAT+TGG | 0.564604 | 5_3:-52612903 | Msa0817410:CDS |
| AACTTCAGGTGTTACAATCA+GGG | 0.565741 | 5_3:-52612916 | Msa0817410:intron |
| AGACGGATGCGATATGAAGT+TGG | 0.565939 | 5_3:-52608953 | Msa0817410:CDS |
| ATAGCTTTCTCTAATCTCGT+TGG | 0.568988 | 5_3:+52612848 | None:intergenic |
| AGTTAAATCCTGGTGTGTGA+TGG | 0.574756 | 5_3:+52608829 | None:intergenic |
| TACCAGACCATATGGTTCAA+AGG | 0.581738 | 5_3:-52612544 | Msa0817410:intron |
| TGCGATATGAAGTTGGTCAC+CGG | 0.587379 | 5_3:-52608946 | Msa0817410:CDS |
| GCCCGAAGGAGGTGTTTCAA+GGG | 0.597517 | 5_3:-52612297 | Msa0817410:CDS |
| CGATTCAGATGGCCCGAAGG+AGG | 0.625565 | 5_3:-52612308 | Msa0817410:intron |
| ATATGAAGTTGGTCACCGGA+AGG | 0.637833 | 5_3:-52608942 | Msa0817410:CDS |
| AACGAGATTAGAGAAAGCTA+TGG | 0.638827 | 5_3:-52612846 | Msa0817410:CDS |
| TGGAGATTGTCCGTTAACTG+AGG | 0.644475 | 5_3:-52608885 | Msa0817410:CDS |
| ACTTCAGGTGTTACAATCAG+GGG | 0.644911 | 5_3:-52612915 | Msa0817410:intron |
| AAGAAGATAAAGGACTGAGA+CGG | 0.649602 | 5_3:-52608970 | Msa0817410:CDS |
| TCAGGTGTTACAATCAGGGG+TGG | 0.653709 | 5_3:-52612912 | Msa0817410:intron |
| TAACGATTCAGATGGCCCGA+AGG | 0.656250 | 5_3:-52612311 | Msa0817410:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATTATCAAATTTATT+AGG | - | chr5_3:52612597-52612616 | Msa0817410:CDS | 10.0% |
| !! | TTTGATTATCAAATTTATTA+GGG | - | chr5_3:52612598-52612617 | Msa0817410:CDS | 10.0% |
| !! | TGATTATTACAAGTTTAATT+TGG | - | chr5_3:52609651-52609670 | Msa0817410:intron | 15.0% |
| !! | GCAAAAAAAATTAAATATGA+GGG | - | chr5_3:52609895-52609914 | Msa0817410:intron | 15.0% |
| !! | CAAAAAAAATTAAATATGAG+GGG | - | chr5_3:52609896-52609915 | Msa0817410:intron | 15.0% |
| !! | ATATTAAAGTATAACAACTA+AGG | - | chr5_3:52612141-52612160 | Msa0817410:intron | 15.0% |
| !!! | ATAACATTTTTATTCTTATG+TGG | - | chr5_3:52612260-52612279 | Msa0817410:CDS | 15.0% |
| !! | TCAATAAAAATTTGATACAA+CGG | + | chr5_3:52612514-52612533 | None:intergenic | 15.0% |
| !!! | ATTTTTATTGAGTAAACTTT+CGG | - | chr5_3:52612523-52612542 | Msa0817410:intron | 15.0% |
| !!! | TAAATTTGATAATCAAAAGA+AGG | + | chr5_3:52612595-52612614 | None:intergenic | 15.0% |
| !! | AACAACAAAAAAACTTTATT+AGG | - | chr5_3:52612631-52612650 | Msa0817410:intron | 15.0% |
| !! | ACAACAAAAAAACTTTATTA+GGG | - | chr5_3:52612632-52612651 | Msa0817410:intron | 15.0% |
| !! | TTTCATTGAGTTAAATATGA+GGG | - | chr5_3:52609861-52609880 | Msa0817410:intron | 20.0% |
| !! | GGCAAAAAAAATTAAATATG+AGG | - | chr5_3:52609894-52609913 | Msa0817410:intron | 20.0% |
| !!! | ACTAATTTTTCATAGAATCT+AGG | - | chr5_3:52609992-52610011 | Msa0817410:intron | 20.0% |
| !!! | CTAATTTTTCATAGAATCTA+GGG | - | chr5_3:52609993-52610012 | Msa0817410:intron | 20.0% |
| !!! | TATTTTATCAAACAGTAATC+AGG | + | chr5_3:52610045-52610064 | None:intergenic | 20.0% |
| !! | TTAAACAAGGAAAAATTAGT+AGG | + | chr5_3:52610152-52610171 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTGTTTCTTAAA+AGG | - | chr5_3:52610187-52610206 | Msa0817410:intron | 20.0% |
| !! | TTAAATTGTAAAGATTGAAG+TGG | - | chr5_3:52610968-52610987 | Msa0817410:intron | 20.0% |
| !! | GATGATATTATGGTTAAATA+CGG | - | chr5_3:52611298-52611317 | Msa0817410:intron | 20.0% |
| !! | TTCTTACAAATCAAAGAAAT+TGG | + | chr5_3:52611331-52611350 | None:intergenic | 20.0% |
| !! | ATGTATTAATATCAACTCAA+AGG | + | chr5_3:52611483-52611502 | None:intergenic | 20.0% |
| !!! | TAAAGATCAATTTTAATCCT+CGG | - | chr5_3:52611528-52611547 | Msa0817410:intron | 20.0% |
| !! | TTGTTTACTTATCAAATTGA+TGG | - | chr5_3:52611583-52611602 | Msa0817410:intron | 20.0% |
| !! | TATACCTTTCTTAAATTCTA+TGG | + | chr5_3:52611718-52611737 | None:intergenic | 20.0% |
| !!! | TAGAATTTAAGAAAGGTATA+TGG | - | chr5_3:52611718-52611737 | Msa0817410:intron | 20.0% |
| !! | GATAAACTTGTAGTAATTAA+TGG | - | chr5_3:52611837-52611856 | Msa0817410:intron | 20.0% |
| !! | ATATACATTGTTAACCAAAA+TGG | - | chr5_3:52612176-52612195 | Msa0817410:intron | 20.0% |
| !!! | AATAGTATAATCTACCATTT+TGG | + | chr5_3:52612193-52612212 | None:intergenic | 20.0% |
| ! | ATGAGATGATAAATTGTGTT+TGG | - | chr5_3:52608858-52608877 | Msa0817410:CDS | 25.0% |
| !! | TCTTCTATATCAGTAGTTTT+TGG | - | chr5_3:52609579-52609598 | Msa0817410:intron | 25.0% |
| !! | CTTCTATATCAGTAGTTTTT+GGG | - | chr5_3:52609580-52609599 | Msa0817410:intron | 25.0% |
| ! | TGTAATAATCAGTGATTACA+AGG | + | chr5_3:52609642-52609661 | None:intergenic | 25.0% |
| ! | GAAATTTGAAAAAATTGCAG+AGG | + | chr5_3:52609836-52609855 | None:intergenic | 25.0% |
| !!! | GCAATTTTTTCAAATTTCCT+TGG | - | chr5_3:52609838-52609857 | Msa0817410:intron | 25.0% |
| ! | TATTTAACTCAATGAAACCA+AGG | + | chr5_3:52609858-52609877 | None:intergenic | 25.0% |
| ! | GTTTCATTGAGTTAAATATG+AGG | - | chr5_3:52609860-52609879 | Msa0817410:intron | 25.0% |
| ! | AAATATGAGGGATATATTGT+CGG | - | chr5_3:52609873-52609892 | Msa0817410:intron | 25.0% |
| !!! | ATTAGTAGGTTTTGTAGAAA+AGG | + | chr5_3:52610138-52610157 | None:intergenic | 25.0% |
| ! | AAAAGGATAATTCAACTCTT+AGG | - | chr5_3:52610204-52610223 | Msa0817410:intron | 25.0% |
| ! | ATCATCATTATACTTAACGA+AGG | + | chr5_3:52610399-52610418 | None:intergenic | 25.0% |
| !! | TTACAGATACAAATGTTTTC+AGG | + | chr5_3:52610567-52610586 | None:intergenic | 25.0% |
| ! | TTCTCAAGTATTCTATGTTT+CGG | + | chr5_3:52610594-52610613 | None:intergenic | 25.0% |
| !!! | AATTTTGTAGGATTTTGGTT+TGG | + | chr5_3:52610894-52610913 | None:intergenic | 25.0% |
| !! | ATGTGAATTTTGTAGGATTT+TGG | + | chr5_3:52610899-52610918 | None:intergenic | 25.0% |
| ! | TTAGGGTTTCAAATTGATAA+AGG | - | chr5_3:52611010-52611029 | Msa0817410:intron | 25.0% |
| ! | TAGGGTTTCAAATTGATAAA+GGG | - | chr5_3:52611011-52611030 | Msa0817410:intron | 25.0% |
| ! | GATTAAGGGTTTGAATAATT+GGG | - | chr5_3:52611159-52611178 | Msa0817410:intron | 25.0% |
| ! | ATTAAGGGTTTGAATAATTG+GGG | - | chr5_3:52611160-52611179 | Msa0817410:intron | 25.0% |
| !! | ATCATACATAAAGTACTCAA+AGG | + | chr5_3:52611268-52611287 | None:intergenic | 25.0% |
| !! | TGATGATGATGATGATATTA+TGG | - | chr5_3:52611288-52611307 | Msa0817410:intron | 25.0% |
| ! | AGAGAAAAGAAATGAATGTA+TGG | - | chr5_3:52611556-52611575 | Msa0817410:intron | 25.0% |
| ! | GAGAAAAGAAATGAATGTAT+GGG | - | chr5_3:52611557-52611576 | Msa0817410:intron | 25.0% |
| !!! | TGATGGATTTGTTCATTAAT+TGG | - | chr5_3:52611600-52611619 | Msa0817410:intron | 25.0% |
| !! | GATGGATTTGTTCATTAATT+GGG | - | chr5_3:52611601-52611620 | Msa0817410:intron | 25.0% |
| ! | GGTCAATATAAAAGACATAT+TGG | - | chr5_3:52611641-52611660 | Msa0817410:intron | 25.0% |
| ! | ATAAAAGACATATTGGTAAG+TGG | - | chr5_3:52611648-52611667 | Msa0817410:intron | 25.0% |
| ! | TATGGCTAACTTAAATTCTA+TGG | + | chr5_3:52611700-52611719 | None:intergenic | 25.0% |
| ! | TTAGCCATAGAATTTAAGAA+AGG | - | chr5_3:52611711-52611730 | Msa0817410:intron | 25.0% |
| ! | CTAGAATAGAATCTTAAATG+AGG | - | chr5_3:52611767-52611786 | Msa0817410:intron | 25.0% |
| !! | ATGTATGTTTTATCCCAATT+CGG | - | chr5_3:52612284-52612303 | Msa0817410:CDS | 25.0% |
| !! | ATAAGTCATTTGAAGTCAAT+CGG | - | chr5_3:52612360-52612379 | Msa0817410:intron | 25.0% |
| !! | ATTCTCTCTTTTGTAAAATG+TGG | - | chr5_3:52612433-52612452 | Msa0817410:intron | 25.0% |
| ! | TTTTCCATCTATCAAGATGT+AGG | - | chr5_3:52609109-52609128 | Msa0817410:intron | 30.0% |
| ACTTATACCTTTGAACCATA+TGG | + | chr5_3:52609269-52609288 | None:intergenic | 30.0% | |
| TAAGTAATGAACTTTCAGCA+TGG | - | chr5_3:52609284-52609303 | Msa0817410:intron | 30.0% | |
| !!! | TTTGACTTTTGAGATTCATC+TGG | - | chr5_3:52609340-52609359 | Msa0817410:intron | 30.0% |
| TAAGTTATGAATCATTGAGC+AGG | - | chr5_3:52609370-52609389 | Msa0817410:intron | 30.0% | |
| ATAAATGAAGTCAAGAAGCT+TGG | - | chr5_3:52609534-52609553 | Msa0817410:intron | 30.0% | |
| ! | TCTAGATTTTACTAGTCCAA+TGG | - | chr5_3:52609731-52609750 | Msa0817410:intron | 30.0% |
| ! | GATGTGTTGTAATGTTGATT+TGG | - | chr5_3:52609802-52609821 | Msa0817410:intron | 30.0% |
| AAAATTAAATATGAGGGGTG+TGG | - | chr5_3:52609901-52609920 | Msa0817410:intron | 30.0% | |
| TCTATCAAACATGCTATAAC+AGG | + | chr5_3:52609973-52609992 | None:intergenic | 30.0% | |
| CAATCAATTGCTATCATACT+TGG | - | chr5_3:52610071-52610090 | Msa0817410:intron | 30.0% | |
| AGCATAAACGTAGTTAAACA+AGG | + | chr5_3:52610165-52610184 | None:intergenic | 30.0% | |
| ! | TCTAAAATCTTGTCTCTTAG+TGG | - | chr5_3:52610246-52610265 | Msa0817410:intron | 30.0% |
| AGTTCATGGTTATGAGAAAA+AGG | - | chr5_3:52610352-52610371 | Msa0817410:intron | 30.0% | |
| GTAACAGAGAAACAAACAAA+AGG | - | chr5_3:52610462-52610481 | Msa0817410:intron | 30.0% | |
| ! | TAGTCAAATTTAGAATGGCT+CGG | + | chr5_3:52610524-52610543 | None:intergenic | 30.0% |
| GCCATTCTAAATTTGACTAA+AGG | - | chr5_3:52610525-52610544 | Msa0817410:intron | 30.0% | |
| GCCTTTAGTCAAATTTAGAA+TGG | + | chr5_3:52610529-52610548 | None:intergenic | 30.0% | |
| TCTCAAGTATTCTATGTTTC+GGG | + | chr5_3:52610593-52610612 | None:intergenic | 30.0% | |
| ! | AAAAACCACATCTTTTCACA+TGG | + | chr5_3:52610725-52610744 | None:intergenic | 30.0% |
| GCATGCTGAATTTACAAAAA+TGG | + | chr5_3:52610763-52610782 | None:intergenic | 30.0% | |
| AGGAGGAAATTGTAAAAATC+TGG | + | chr5_3:52610818-52610837 | None:intergenic | 30.0% | |
| ! | CAATTGCATGTGAATTTTGT+AGG | + | chr5_3:52610906-52610925 | None:intergenic | 30.0% |
| CAAAATTCACATGCAATTGA+AGG | - | chr5_3:52610907-52610926 | Msa0817410:intron | 30.0% | |
| ! | AATTGAAGGTTTAGAATGCT+TGG | - | chr5_3:52610921-52610940 | Msa0817410:intron | 30.0% |
| ! | AAGTGGAAGAAGAAGAATTT+TGG | - | chr5_3:52610985-52611004 | Msa0817410:intron | 30.0% |
| ! | AGTGGAAGAAGAAGAATTTT+GGG | - | chr5_3:52610986-52611005 | Msa0817410:intron | 30.0% |
| AGGGTTTCAAATTGATAAAG+GGG | - | chr5_3:52611012-52611031 | Msa0817410:intron | 30.0% | |
| AATTGATAAAGGGGAATTGA+AGG | - | chr5_3:52611021-52611040 | Msa0817410:intron | 30.0% | |
| TTCTATAGAGTCAAAGTTGA+AGG | - | chr5_3:52611055-52611074 | Msa0817410:intron | 30.0% | |
| AATTAATGAGGAATGAAGGA+GGG | + | chr5_3:52611136-52611155 | None:intergenic | 30.0% | |
| AAATTAATGAGGAATGAAGG+AGG | + | chr5_3:52611137-52611156 | None:intergenic | 30.0% | |
| TCCTTCATTCCTCATTAATT+TGG | - | chr5_3:52611136-52611155 | Msa0817410:intron | 30.0% | |
| CCTTCATTCCTCATTAATTT+GGG | - | chr5_3:52611137-52611156 | Msa0817410:intron | 30.0% | |
| ! | TCCTCATTAATTTGGGATTA+AGG | - | chr5_3:52611144-52611163 | Msa0817410:intron | 30.0% |
| ! | CCTCATTAATTTGGGATTAA+GGG | - | chr5_3:52611145-52611164 | Msa0817410:intron | 30.0% |
| GGATTAAGGGTTTGAATAAT+TGG | - | chr5_3:52611158-52611177 | Msa0817410:intron | 30.0% | |
| TTATGGTTAAATACGGATGT+TGG | - | chr5_3:52611305-52611324 | Msa0817410:intron | 30.0% | |
| TAGTGATCTCAAAACATCAT+AGG | - | chr5_3:52611360-52611379 | Msa0817410:intron | 30.0% | |
| AATTATGGACAGTACTACAA+AGG | + | chr5_3:52611448-52611467 | None:intergenic | 30.0% | |
| TTGTAGTACTGTCCATAATT+CGG | - | chr5_3:52611448-52611467 | Msa0817410:intron | 30.0% | |
| TATTGGTAAGTGGACATAAA+CGG | - | chr5_3:52611658-52611677 | Msa0817410:intron | 30.0% | |
| ! | TACATTACCTTTTCTACACA+AGG | + | chr5_3:52611813-52611832 | None:intergenic | 30.0% |
| AGGTTTATATACAAGTTGTG+TGG | - | chr5_3:52611925-52611944 | Msa0817410:intron | 30.0% | |
| GGTTTATATACAAGTTGTGT+GGG | - | chr5_3:52611926-52611945 | Msa0817410:intron | 30.0% | |
| TATAAACTAGCCATTGTAAG+TGG | + | chr5_3:52612034-52612053 | None:intergenic | 30.0% | |
| TAGTTTATAGCAGACTACAT+TGG | - | chr5_3:52612045-52612064 | Msa0817410:intron | 30.0% | |
| ! | TGTATGTTTTATCCCAATTC+GGG | - | chr5_3:52612285-52612304 | Msa0817410:CDS | 30.0% |
| TGAAAAAGAAACAACAGAGT+GGG | + | chr5_3:52612337-52612356 | None:intergenic | 30.0% | |
| TCTTTGTTACAGATATGAGA+AGG | - | chr5_3:52612781-52612800 | Msa0817410:CDS | 30.0% | |
| ! | CATTAATCTCTTTTTCCTTC+CGG | + | chr5_3:52612879-52612898 | None:intergenic | 30.0% |
| GGAAGGAAAAAGAGATTAAT+GGG | - | chr5_3:52612878-52612897 | Msa0817410:CDS | 30.0% | |
| AGTAAAACCAAGTTAAATCC+TGG | + | chr5_3:52612987-52613006 | None:intergenic | 30.0% | |
| ! | TAACTTCAGGTGTTACAATC+AGG | - | chr5_3:52608886-52608905 | Msa0817410:CDS | 35.0% |
| ! | AACTTCAGGTGTTACAATCA+GGG | - | chr5_3:52608887-52608906 | Msa0817410:CDS | 35.0% |
| ATAGCTTTCTCTAATCTCGT+TGG | + | chr5_3:52608958-52608977 | None:intergenic | 35.0% | |
| AACGAGATTAGAGAAAGCTA+TGG | - | chr5_3:52608957-52608976 | Msa0817410:CDS | 35.0% | |
| GAGAAAGCTATGGTTCAATA+TGG | - | chr5_3:52608967-52608986 | Msa0817410:CDS | 35.0% | |
| TGGTTCAATATGGAACTTGT+CGG | - | chr5_3:52608977-52608996 | Msa0817410:CDS | 35.0% | |
| TACTTGACTGTTTCGTAAAC+CGG | + | chr5_3:52609012-52609031 | None:intergenic | 35.0% | |
| TATTATCAGTTTCCGAAGAC+TGG | - | chr5_3:52609030-52609049 | Msa0817410:intron | 35.0% | |
| ATTATCAGTTTCCGAAGACT+GGG | - | chr5_3:52609031-52609050 | Msa0817410:intron | 35.0% | |
| !!! | TTGTTGATTTTCCCAGTCTT+CGG | + | chr5_3:52609045-52609064 | None:intergenic | 35.0% |
| ! | TTTTCAGACTCGCGAAAATT+TGG | - | chr5_3:52609200-52609219 | Msa0817410:intron | 35.0% |
| ATTTGCTTCACAGTACTAGA+AGG | - | chr5_3:52609447-52609466 | Msa0817410:intron | 35.0% | |
| TTTGCTTCACAGTACTAGAA+GGG | - | chr5_3:52609448-52609467 | Msa0817410:intron | 35.0% | |
| TCTCTGATCACAATTACCAT+TGG | + | chr5_3:52609750-52609769 | None:intergenic | 35.0% | |
| ACTCTTAGGAAGATGAACTA+TGG | - | chr5_3:52610218-52610237 | Msa0817410:intron | 35.0% | |
| AAAATCTTGTCTCTTAGTGG+AGG | - | chr5_3:52610249-52610268 | Msa0817410:intron | 35.0% | |
| GTGGAGGTAGAATTCATTTA+AGG | - | chr5_3:52610265-52610284 | Msa0817410:intron | 35.0% | |
| AAGGCTAAATGCAATTGTAG+TGG | - | chr5_3:52610371-52610390 | Msa0817410:intron | 35.0% | |
| GGCAAATTTCATCGTTTAAG+GGG | + | chr5_3:52610649-52610668 | None:intergenic | 35.0% | |
| GGGCAAATTTCATCGTTTAA+GGG | + | chr5_3:52610650-52610669 | None:intergenic | 35.0% | |
| TGGGCAAATTTCATCGTTTA+AGG | + | chr5_3:52610651-52610670 | None:intergenic | 35.0% | |
| !!! | ATGTGGTTTTTCGTTGACTT+TGG | - | chr5_3:52610734-52610753 | Msa0817410:intron | 35.0% |
| !!! | AAATCTGGTTTTCTCTCTCT+TGG | + | chr5_3:52610803-52610822 | None:intergenic | 35.0% |
| !!! | TGTAGGATTTTGGTTTGGAA+TGG | + | chr5_3:52610889-52610908 | None:intergenic | 35.0% |
| ! | GTGGAAGAAGAAGAATTTTG+GGG | - | chr5_3:52610987-52611006 | Msa0817410:intron | 35.0% |
| !!! | AGAAGAAGAATTTTGGGGTT+AGG | - | chr5_3:52610992-52611011 | Msa0817410:intron | 35.0% |
| !!! | GAAGAAGAATTTTGGGGTTA+GGG | - | chr5_3:52610993-52611012 | Msa0817410:intron | 35.0% |
| CAAAGTTGAAGGAAGACATT+AGG | - | chr5_3:52611066-52611085 | Msa0817410:intron | 35.0% | |
| ! | CATTAAAGCATCACTACCAT+AGG | - | chr5_3:52611093-52611112 | Msa0817410:intron | 35.0% |
| TCACTACCATAGGAAAACAA+AGG | - | chr5_3:52611103-52611122 | Msa0817410:intron | 35.0% | |
| TACCATAGGAAAACAAAGGT+GGG | - | chr5_3:52611107-52611126 | Msa0817410:intron | 35.0% | |
| ATTAATGAGGAATGAAGGAG+GGG | + | chr5_3:52611135-52611154 | None:intergenic | 35.0% | |
| CCCAAATTAATGAGGAATGA+AGG | + | chr5_3:52611140-52611159 | None:intergenic | 35.0% | |
| CCCTTAATCCCAAATTAATG+AGG | + | chr5_3:52611148-52611167 | None:intergenic | 35.0% | |
| GTTTGAATAATTGGGGCTTT+GGG | - | chr5_3:52611167-52611186 | Msa0817410:intron | 35.0% | |
| TTTGAATAATTGGGGCTTTG+GGG | - | chr5_3:52611168-52611187 | Msa0817410:intron | 35.0% | |
| ATCTCAAAACATCATAGGCA+TGG | - | chr5_3:52611365-52611384 | Msa0817410:intron | 35.0% | |
| AGGCATGGCATAATTATATG+TGG | - | chr5_3:52611380-52611399 | Msa0817410:intron | 35.0% | |
| AGGTATCATGAACCGAATTA+TGG | + | chr5_3:52611463-52611482 | None:intergenic | 35.0% | |
| ! | TTTCTTTTCTCTAATCACCG+AGG | + | chr5_3:52611548-52611567 | None:intergenic | 35.0% |
| TGGGACATTCAAATAGAAAC+AGG | - | chr5_3:52611620-52611639 | Msa0817410:intron | 35.0% | |
| TGGACATAAACGGTTCATTA+TGG | - | chr5_3:52611668-52611687 | Msa0817410:intron | 35.0% | |
| ! | TAGTGTCATTAACCAGTTTC+AGG | + | chr5_3:52611750-52611769 | None:intergenic | 35.0% |
| TAGTTGCGATATATGCAACT+AGG | - | chr5_3:52611905-52611924 | Msa0817410:intron | 35.0% | |
| TTCCAATGTATGTAGGTAAG+TGG | - | chr5_3:52612004-52612023 | Msa0817410:intron | 35.0% | |
| TCCAATGTATGTAGGTAAGT+GGG | - | chr5_3:52612005-52612024 | Msa0817410:intron | 35.0% | |
| CTGAAAAAGAAACAACAGAG+TGG | + | chr5_3:52612338-52612357 | None:intergenic | 35.0% | |
| !!! | CACTCTGTTGTTTCTTTTTC+AGG | - | chr5_3:52612336-52612355 | Msa0817410:intron | 35.0% |
| ! | ATTTGAAGTCAATCGGATAC+CGG | - | chr5_3:52612367-52612386 | Msa0817410:intron | 35.0% |
| !!! | ACTTTCGGTTTTAAGATCTC+TGG | - | chr5_3:52612538-52612557 | Msa0817410:intron | 35.0% |
| ! | GTCAAGATATGCCAGTTTTA+TGG | - | chr5_3:52612654-52612673 | Msa0817410:intron | 35.0% |
| AAGGATATTCTTGCGTTTAC+TGG | - | chr5_3:52612800-52612819 | Msa0817410:CDS | 35.0% | |
| AAGAAGATAAAGGACTGAGA+CGG | - | chr5_3:52612833-52612852 | Msa0817410:CDS | 35.0% | |
| CGGAAGGAAAAAGAGATTAA+TGG | - | chr5_3:52612877-52612896 | Msa0817410:CDS | 35.0% | |
| ! | AGGAAGTTTTCCTCAGTTAA+CGG | + | chr5_3:52612931-52612950 | None:intergenic | 35.0% |
| TCCTTACTACTAAGAGAACT+TGG | - | chr5_3:52612947-52612966 | Msa0817410:intron | 35.0% | |
| ACCAAGTTCTCTTAGTAGTA+AGG | + | chr5_3:52612951-52612970 | None:intergenic | 35.0% | |
| !! | GTGTTTGGTGATGTAACTTC+AGG | - | chr5_3:52608873-52608892 | Msa0817410:CDS | 40.0% |
| ! | ACTTCAGGTGTTACAATCAG+GGG | - | chr5_3:52608888-52608907 | Msa0817410:CDS | 40.0% |
| TCAATAGTTCCTGCTGACAT+TGG | - | chr5_3:52608928-52608947 | Msa0817410:CDS | 40.0% | |
| TCAATATGGAACTTGTCGGT+TGG | - | chr5_3:52608981-52609000 | Msa0817410:intron | 40.0% | |
| TGCTCTCATTGAGTTATGCA+CGG | - | chr5_3:52609082-52609101 | Msa0817410:intron | 40.0% | |
| CATGCCTACATCTTGATAGA+TGG | + | chr5_3:52609116-52609135 | None:intergenic | 40.0% | |
| CATCTATCAAGATGTAGGCA+TGG | - | chr5_3:52609114-52609133 | Msa0817410:intron | 40.0% | |
| ATGTAGGCATGGTTTGAATC+TGG | - | chr5_3:52609125-52609144 | Msa0817410:intron | 40.0% | |
| ! | TGGTTTGAATCTGGAACAAC+TGG | - | chr5_3:52609134-52609153 | Msa0817410:intron | 40.0% |
| ! | TGGTCTTAGCATTCTAACTG+TGG | - | chr5_3:52609154-52609173 | Msa0817410:intron | 40.0% |
| TCTGAAAAAATGCTCCTACC+TGG | + | chr5_3:52609188-52609207 | None:intergenic | 40.0% | |
| !! | GCAATGATGGAGAGAGTTTT+GGG | - | chr5_3:52609231-52609250 | Msa0817410:intron | 40.0% |
| TACCAGACCATATGGTTCAA+AGG | - | chr5_3:52609259-52609278 | Msa0817410:intron | 40.0% | |
| TACCTTTGAACCATATGGTC+TGG | + | chr5_3:52609264-52609283 | None:intergenic | 40.0% | |
| ! | CAAGAAGCTTGGTGATCTTA+AGG | - | chr5_3:52609545-52609564 | Msa0817410:intron | 40.0% |
| ! | TTCTCATGCCTACAGGATTT+TGG | + | chr5_3:52609774-52609793 | None:intergenic | 40.0% |
| CAGATCAGACATGCTATAAC+AGG | + | chr5_3:52610020-52610039 | None:intergenic | 40.0% | |
| AACCATGAACTAGAGTGAAG+TGG | + | chr5_3:52610343-52610362 | None:intergenic | 40.0% | |
| ! | ATGATGATGCAAGTGCAATG+AGG | - | chr5_3:52610411-52610430 | Msa0817410:intron | 40.0% |
| GCTTACTTGTCATTCTCTAG+TGG | + | chr5_3:52610495-52610514 | None:intergenic | 40.0% | |
| CGTTTCCATGTGAAAAGATG+TGG | - | chr5_3:52610717-52610736 | Msa0817410:intron | 40.0% | |
| !!! | TGGTTTTTCGTTGACTTTGG+TGG | - | chr5_3:52610737-52610756 | Msa0817410:intron | 40.0% |
| !!! | AGGATTTTGGTTTGGAATGG+TGG | + | chr5_3:52610886-52610905 | None:intergenic | 40.0% |
| ! | GGCTTGTTTCAAGACTTACA+AGG | - | chr5_3:52610942-52610961 | Msa0817410:intron | 40.0% |
| CTACCATAGGAAAACAAAGG+TGG | - | chr5_3:52611106-52611125 | Msa0817410:intron | 40.0% | |
| !!! | AACCCACCTTTGTTTTCCTA+TGG | + | chr5_3:52611112-52611131 | None:intergenic | 40.0% |
| GGTTTGAATAATTGGGGCTT+TGG | - | chr5_3:52611166-52611185 | Msa0817410:intron | 40.0% | |
| ATATGGTGTGAACCTGAAAC+TGG | - | chr5_3:52611735-52611754 | Msa0817410:intron | 40.0% | |
| TGTCTTGCCTTGTGTAGAAA+AGG | - | chr5_3:52611803-52611822 | Msa0817410:intron | 40.0% | |
| ACATTGGAACTGACACCTAA+GGG | + | chr5_3:52611993-52612012 | None:intergenic | 40.0% | |
| TACATTGGAACTGACACCTA+AGG | + | chr5_3:52611994-52612013 | None:intergenic | 40.0% | |
| GTGTCAGTTCCAATGTATGT+AGG | - | chr5_3:52611997-52612016 | Msa0817410:intron | 40.0% | |
| CCAATGTATGTAGGTAAGTG+GGG | - | chr5_3:52612006-52612025 | Msa0817410:intron | 40.0% | |
| TCTCAATGAGTTCCCGAATT+GGG | + | chr5_3:52612300-52612319 | None:intergenic | 40.0% | |
| CTGCAGTCACAAGAAGATAA+AGG | - | chr5_3:52612823-52612842 | Msa0817410:CDS | 40.0% | |
| AGTTAAATCCTGGTGTGTGA+TGG | + | chr5_3:52612977-52612996 | None:intergenic | 40.0% | |
| TCACACACCAGGATTTAACT+TGG | - | chr5_3:52612977-52612996 | Msa0817410:intron | 40.0% | |
| ! | AACTTGTCGGTTGGAGAATC+CGG | - | chr5_3:52608990-52609009 | Msa0817410:intron | 45.0% |
| CTCATTGAGTTATGCACGGT+TGG | - | chr5_3:52609086-52609105 | Msa0817410:intron | 45.0% | |
| ! | CTAACTGTGGAACTTTTGCC+AGG | - | chr5_3:52609167-52609186 | Msa0817410:intron | 45.0% |
| AAACTCTCTCCATCATTGCC+CGG | + | chr5_3:52609230-52609249 | None:intergenic | 45.0% | |
| !! | GGCAATGATGGAGAGAGTTT+TGG | - | chr5_3:52609230-52609249 | Msa0817410:intron | 45.0% |
| ! | GGGTACAGTTATTTCAAGCG+TGG | - | chr5_3:52609468-52609487 | Msa0817410:intron | 45.0% |
| AGCGTGGATAACGATTCAGA+TGG | - | chr5_3:52609484-52609503 | Msa0817410:intron | 45.0% | |
| GATTATGTGCCTCTTGCTTG+TGG | - | chr5_3:52609702-52609721 | Msa0817410:intron | 45.0% | |
| AGACTACATCCACAAGCAAG+AGG | + | chr5_3:52609714-52609733 | None:intergenic | 45.0% | |
| TCAGAGAGCCAAAATCCTGT+AGG | - | chr5_3:52609763-52609782 | Msa0817410:intron | 45.0% | |
| ! | AAGCTTGTTCTCATGCCTAC+AGG | + | chr5_3:52609781-52609800 | None:intergenic | 45.0% |
| TCTCCTATCTGCATTGGATG+AGG | + | chr5_3:52610300-52610319 | None:intergenic | 45.0% | |
| CCAACATCTCCTATCTGCAT+TGG | + | chr5_3:52610306-52610325 | None:intergenic | 45.0% | |
| CCAATGCAGATAGGAGATGT+TGG | - | chr5_3:52610303-52610322 | Msa0817410:intron | 45.0% | |
| ! | AGCCACTTCACTCTAGTTCA+TGG | - | chr5_3:52610338-52610357 | Msa0817410:intron | 45.0% |
| AGTGCAATGAGGACTCATCT+TGG | - | chr5_3:52610422-52610441 | Msa0817410:intron | 45.0% | |
| !!! | ATGTTTTCAGGTGTTGCGCT+CGG | + | chr5_3:52610555-52610574 | None:intergenic | 45.0% |
| ! | TCCTGCACTCTCGTGATTTT+GGG | + | chr5_3:52610670-52610689 | None:intergenic | 45.0% |
| ! | CTCTTCCTTCCATTAGCTCT+CGG | - | chr5_3:52610836-52610855 | Msa0817410:intron | 45.0% |
| ! | TTTGGAATGGTGGAGTATGG+TGG | + | chr5_3:52610876-52610895 | None:intergenic | 45.0% |
| ! | TGGTTTGGAATGGTGGAGTA+TGG | + | chr5_3:52610879-52610898 | None:intergenic | 45.0% |
| CCCCACTTACCTACATACAT+TGG | + | chr5_3:52612009-52612028 | None:intergenic | 45.0% | |
| CTAACCAATCACTCAGACGT+GGG | + | chr5_3:52612093-52612112 | None:intergenic | 45.0% | |
| TCTAACCAATCACTCAGACG+TGG | + | chr5_3:52612094-52612113 | None:intergenic | 45.0% | |
| GTCTCAATGAGTTCCCGAAT+TGG | + | chr5_3:52612301-52612320 | None:intergenic | 45.0% | |
| GACTCTAGACACTTGTGATC+CGG | + | chr5_3:52612389-52612408 | None:intergenic | 45.0% | |
| GCACAGCACATCCATAAAAC+TGG | + | chr5_3:52612668-52612687 | None:intergenic | 45.0% | |
| AGACGGATGCGATATGAAGT+TGG | - | chr5_3:52612850-52612869 | Msa0817410:CDS | 45.0% | |
| ! | TGCGATATGAAGTTGGTCAC+CGG | - | chr5_3:52612857-52612876 | Msa0817410:CDS | 45.0% |
| ! | ATATGAAGTTGGTCACCGGA+AGG | - | chr5_3:52612861-52612880 | Msa0817410:CDS | 45.0% |
| GGGACTGAAAGAAGATTGCT+TGG | - | chr5_3:52612898-52612917 | Msa0817410:CDS | 45.0% | |
| TGGAGATTGTCCGTTAACTG+AGG | - | chr5_3:52612918-52612937 | Msa0817410:intron | 45.0% | |
| !! | TTGGTTTTCCATCACACACC+AGG | - | chr5_3:52612966-52612985 | Msa0817410:intron | 45.0% |
| ! | TCAGGTGTTACAATCAGGGG+TGG | - | chr5_3:52608891-52608910 | Msa0817410:CDS | 50.0% |
| ACAATCAGGGGTGGATGCAT+TGG | - | chr5_3:52608900-52608919 | Msa0817410:CDS | 50.0% | |
| !! | GTTGGTCTTCCAATGTCAGC+AGG | + | chr5_3:52608940-52608959 | None:intergenic | 50.0% |
| ! | CTGTGGAACTTTTGCCAGGT+AGG | - | chr5_3:52609171-52609190 | Msa0817410:intron | 50.0% |
| ! | CTCGCGAAAATTTGGAGCAC+CGG | - | chr5_3:52609208-52609227 | Msa0817410:intron | 50.0% |
| ! | TCGCGAAAATTTGGAGCACC+GGG | - | chr5_3:52609209-52609228 | Msa0817410:intron | 50.0% |
| GGGAACTCTACCAGACCATA+TGG | - | chr5_3:52609251-52609270 | Msa0817410:intron | 50.0% | |
| TAACGATTCAGATGGCCCGA+AGG | - | chr5_3:52609492-52609511 | Msa0817410:intron | 50.0% | |
| TCCCTTGAAACACCTCCTTC+GGG | + | chr5_3:52609510-52609529 | None:intergenic | 50.0% | |
| CTCCCTTGAAACACCTCCTT+CGG | + | chr5_3:52609511-52609530 | None:intergenic | 50.0% | |
| CCTATCTGCATTGGATGAGG+TGG | + | chr5_3:52610297-52610316 | None:intergenic | 50.0% | |
| CCACCTCATCCAATGCAGAT+AGG | - | chr5_3:52610294-52610313 | Msa0817410:intron | 50.0% | |
| !! | GGAGATGTTGGTTCGTAGTG+TGG | - | chr5_3:52610315-52610334 | Msa0817410:intron | 50.0% |
| ! | GTCCTGCACTCTCGTGATTT+TGG | + | chr5_3:52610671-52610690 | None:intergenic | 50.0% |
| CGAGCTTCAAAACCAAACGC+AGG | + | chr5_3:52610699-52610718 | None:intergenic | 50.0% | |
| GAGCTAATGGAAGGAAGAGG+AGG | + | chr5_3:52610835-52610854 | None:intergenic | 50.0% | |
| CGAGAGCTAATGGAAGGAAG+AGG | + | chr5_3:52610838-52610857 | None:intergenic | 50.0% | |
| TTCAGCCGAGAGCTAATGGA+AGG | + | chr5_3:52610844-52610863 | None:intergenic | 50.0% | |
| GTGTTTCAGCCGAGAGCTAA+TGG | + | chr5_3:52610848-52610867 | None:intergenic | 50.0% | |
| GTGTGGGTAGAGTCAAGCTA+AGG | - | chr5_3:52611942-52611961 | Msa0817410:intron | 50.0% | |
| ATCTTTCCTCCGAGCACAGA+GGG | - | chr5_3:52611965-52611984 | Msa0817410:intron | 50.0% | |
| ATTGCCCACGTCTGAGTGAT+TGG | - | chr5_3:52612086-52612105 | Msa0817410:intron | 50.0% | |
| CAGAGTGGGATGAGACACTA+CGG | + | chr5_3:52612323-52612342 | None:intergenic | 50.0% | |
| !! | TTTGGAGCACCGGGCAATGA+TGG | - | chr5_3:52609218-52609237 | Msa0817410:intron | 55.0% |
| !! | GCCCGAAGGAGGTGTTTCAA+GGG | - | chr5_3:52609506-52609525 | Msa0817410:intron | 55.0% |
| ! | ACGGCGATGTCGTGGTTCTA+TGG | - | chr5_3:52609929-52609948 | Msa0817410:intron | 55.0% |
| ! | CGGCGATGTCGTGGTTCTAT+GGG | - | chr5_3:52609930-52609949 | Msa0817410:intron | 55.0% |
| ! | GCCCAAAATCACGAGAGTGC+AGG | - | chr5_3:52610666-52610685 | Msa0817410:intron | 55.0% |
| GCAGGACATAGTCCTGCGTT+TGG | - | chr5_3:52610684-52610703 | Msa0817410:intron | 55.0% | |
| GATCTTTCCTCCGAGCACAG+AGG | - | chr5_3:52611964-52611983 | Msa0817410:intron | 55.0% | |
| CTAAGGGTTCCCTCTGTGCT+CGG | + | chr5_3:52611977-52611996 | None:intergenic | 55.0% | |
| ! | AAGTGGGGCGCCACTTACAA+TGG | - | chr5_3:52612021-52612040 | Msa0817410:intron | 55.0% |
| CGATTCAGATGGCCCGAAGG+AGG | - | chr5_3:52609495-52609514 | Msa0817410:intron | 60.0% | |
| !! | GGCCCGAAGGAGGTGTTTCA+AGG | - | chr5_3:52609505-52609524 | Msa0817410:intron | 60.0% |
| ! | TATGAGGGGTGTGGCTGCGA+CGG | - | chr5_3:52609910-52609929 | Msa0817410:intron | 60.0% |
| CGAGCACAGAGGGAACCCTT+AGG | - | chr5_3:52611975-52611994 | Msa0817410:intron | 60.0% | |
| AGGGTTCCCTCTGTGCTCGG+AGG | + | chr5_3:52611974-52611993 | None:intergenic | 65.0% | |
| TGGCTGCGACGGCGATGTCG+TGG | - | chr5_3:52609921-52609940 | Msa0817410:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 52608817 | 52613008 | 52608817 | ID=Msa0817410;Name=Msa0817410 |
| chr5_3 | mRNA | 52608817 | 52613008 | 52608817 | ID=Msa0817410-mRNA-1;Parent=Msa0817410;Name=Msa0817410-mRNA-1;_AED=0.26;_eAED=0.50;_QI=0|0|0.2|0.8|1|1|5|0|183 |
| chr5_3 | exon | 52613006 | 52613008 | 52613006 | ID=Msa0817410-mRNA-1:exon:15847;Parent=Msa0817410-mRNA-1 |
| chr5_3 | exon | 52612718 | 52612930 | 52612718 | ID=Msa0817410-mRNA-1:exon:15846;Parent=Msa0817410-mRNA-1 |
| chr5_3 | exon | 52612545 | 52612636 | 52612545 | ID=Msa0817410-mRNA-1:exon:15845;Parent=Msa0817410-mRNA-1 |
| chr5_3 | exon | 52612259 | 52612322 | 52612259 | ID=Msa0817410-mRNA-1:exon:15844;Parent=Msa0817410-mRNA-1 |
| chr5_3 | exon | 52608817 | 52608996 | 52608817 | ID=Msa0817410-mRNA-1:exon:15843;Parent=Msa0817410-mRNA-1 |
| chr5_3 | CDS | 52613006 | 52613008 | 52613006 | ID=Msa0817410-mRNA-1:cds;Parent=Msa0817410-mRNA-1 |
| chr5_3 | CDS | 52612718 | 52612930 | 52612718 | ID=Msa0817410-mRNA-1:cds;Parent=Msa0817410-mRNA-1 |
| chr5_3 | CDS | 52612545 | 52612636 | 52612545 | ID=Msa0817410-mRNA-1:cds;Parent=Msa0817410-mRNA-1 |
| chr5_3 | CDS | 52612259 | 52612322 | 52612259 | ID=Msa0817410-mRNA-1:cds;Parent=Msa0817410-mRNA-1 |
| chr5_3 | CDS | 52608817 | 52608996 | 52608817 | ID=Msa0817410-mRNA-1:cds;Parent=Msa0817410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
